core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1521126	1521725	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	1	600	GCA_006742205_1_1_1392	GCA_006742205_1_1_1392	-	2422602	.	.	hypothetical protein	MFVKEEKPVNKIVEILRKTSSHLFKFHGEVAMHLFLNDDFILPSKIDICVERKKLLEIIRVIPEEFTIHYYDNQLYERLRESLSLSDVEHVKVFKNDTEVMTIFVYDVVNDEWLFRLDHHIRLPKNNIYFHSLSWNVDYIKPEIVLMYDLMSEQKYHQFSNYKAVIDSLSYYQFYILKLVVGEQRIKKAIVNSSTKKIS*	.	hypothetical_protein	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0001	persistent	direct	high	599	0.998	GCA_006742205.1_01472
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1522052	1522924	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	927	1799	GCA_006742205_1_1_1393	GCA_006742205_1_1_1393	+	2422602	.	.	hypothetical protein	MSLTIILSIIIIILIMAMVLNQKFMKDRVETEEYARNQLISKNSILSEENLSLKNQMLSTNNDVGQHAFKNAKRELRKILNRFKEEGRLRSYTIVPTSNLAVKHPLFEYARSFDFIIITDVGLINVDVKNWNQKTFYHFDVPDQHLEEGQPQYNTEKVVGHYISNRYHSQFKTTRSGVYTFIEILQDNRVIYEFYDHDPYDKAANNAKALKDKIENDYNFKIQSIGVIYFSDGSVNIIEGSDESDKYVDTVSTPISLEKVIEEAIDLSKHPLTDKQIEEISENFKQHMNN*	.	hypothetical_protein	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0002	persistent	direct	high	872	0.999	GCA_006742205.1_01473
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1523660	1524181	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	2535	3056	GCA_006742205_1_1_1394	GCA_006742205_1_1_1394	-	2422602	.	PDB:1RKN_A	Thermonuclease	MSSLLVVAMIGILVIIFQFVNHSGPFSGSESQHQSDNSNLNGKDKVYVKRVVDGDTFVAQKNGEEIKVRLIGVDTPETVKPNTPVQPYGKQASNYTKKYLTHQNVYLEYDKEKTDRYGRTLAYVWLKNGDMFNESLVKKGLAREKYFSPNGKYRDTFVNAQEEAKKRKLNIWS*	common_virus_hmm	common_virus	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0003	persistent	direct	high	521	0.998	GCA_006742205.1_01474
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1524340	1524549	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	3215	3424	GCA_006742205_1_1_1395	GCA_006742205_1_1_1395	+	2422602	.	.	hypothetical protein	MMLGVKEMDTSNENKITIIAVIVAIIVGVVLQIVFKLPLIVSLVGSVFLGMFVGFIVYLIQSFRRKKKN*	.	hypothetical_protein	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0004	persistent	direct	moderate	188	0.895	GCA_006742205.1_01475
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1524718	1525320	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	3593	4195	GCA_006742205_1_1_1396	GCA_006742205_1_1_1396	-	2422602	.	cd19930	phosphoacceptor receiver (REC) domain of DesR and similar proteins. This group is composed of Bacillus subtilis DesR, Streptococcus pneumoniae response regulator spr1814, and similar proteins, all containing an N-terminal REC domain and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. DesR is a response regulator that, together with its cognate sensor kinase DesK, comprises a two-component regulatory system that controls membrane fluidity. Phosphorylation of the REC domain of DesR is allosterically coupled to two distinct exposed surfaces of the protein, controlling noncanonical dimerization/tetramerization, cooperative activation, and DesK binding. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	MISLVITEDQLMLRKAMVQLIEMHEEMNVIKDFENGVEALEFIENNEPNVAILDIEIPGLTGLEILSYVRKKQLNTRIIIVTTFKRPGYFEKAVANDVDAYVLKERSIDDLIKTIYKVTKGEKEYSPSLMTSLFTESNPLTHKEQVVLREIGNGLSSKEIASKLYLSNGTVRNYTSTIIDKMNSDHRFEAWKKANEKGWI*	mmseqs_cdd	nonviral_gene	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0005	persistent	direct	high	602	0.998	GCA_006742205.1_01476
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1525317	1526411	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	4192	5286	GCA_006742205_1_1_1397	GCA_006742205_1_1_1397	-	2422602	.	COG4585	Signal transduction histidine kinase  [Signal transduction mechanisms]. 	MESRSWGVRIGELSTLIYLIFPILAIFVDKRGNFLTYLIVCTIFIISYVTMIIFYKYLSDSILYSLLVIHYLGIFYFVYSVNPMNSLFFFYSAFALPFIFNVRVVSKEFITFLIAMISCLILTYIFNPTFVVPLSAFYLVILIVAVGNFKNRDERIMKAKLEEKNKYINVLIAQQERNRISQDLHDTLGHVFASLTLKSELAVKLIDTNPKEAKNEMQAINQLSTEALNKVRLIIDDLKIQSFEDEISSLEHLLQNANLHFKFNNKSAAKSLNPAKQSILSMIFREAINNVIKHAHATEVIGELKVHEHQIILKIKDNGVGIENEDASNLKSIKERVDYLNGKLIVQSNNGTLIIVEIPRGDLL*	mmseqs_cdd	nonviral_gene	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0006	persistent	direct	high	1094	0.999	GCA_006742205.1_01477
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1526411	1527142	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	5286	6017	GCA_006742205_1_1_1398	GCA_006742205_1_1_1398	-	2422602	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MISTYFKIELKIIFRKKLYLVMSIFLPVVFYLLFTSILDMPEEAKLKFYKEYMYSMTVFSLMNFCLLSFPLDLIEERNQGWYKRLMVTPLSSFQYYLVKISKTMCQFLIAITIIFSVAHFYKDVHMTVFQWIFSALTLWIGVSLFLTLGLIIAQLNDIQKASSFANLLNITLAILGGLWFPVYTFPDWLQSISKHMPTYNLKLLAIDLAQNKGVNIEAFGYLVVYCIIFVSIALFMNKKGDVH*	mmseqs_cdd	nonviral_gene	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0007	persistent	direct	high	731	0.999	GCA_006742205.1_01478
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1527139	1528014	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	6014	6889	GCA_006742205_1_1_1399	GCA_006742205_1_1_1399	-	2422602	.	COG1131	ABC-type multidrug transport system, ATPase component [Defense mechanisms]. 	MIELRHISKSFKEHKVLEDISIDIKNNCCTALIGKNGAGKSTLIDIIVGNNHYDSGQIADKSNLLNRHKMGILFQKTEFPKYIKVCELLHLYQSFYQTFISFHQFKEITQFSDRQMNQFACNLSGGQQRILDFALALVGKPELLILDEPTSAMDVEMRQHFWNVIDKLKMNNTTILYTSHYIEEVERMADQVMMLDKGKIQLDDSPENIKRNQSYSVIRIPCKYQELINQLKHKYEIELIKNRYEIKTTDVSDVLQLLKQYHVNFNKIEILKKSLLEVMFSNDLSKGGNYQ*	mmseqs_cdd	nonviral_gene	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0008	persistent	direct	high	875	0.999	GCA_006742205.1_01479
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1528192	1529664	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	7067	8539	GCA_006742205_1_1_1400	GCA_006742205_1_1_1400	-	2422602	.	PDB:2ZE9_A	Phospholipase-D	MNFGFLGTILTILLVVGFITNVVLAFVIIFLERDRRTASSTWAWLFVLFVLPVIGFILYLFLGRTVSKKKMEKNNGDELHAFEDLVQDQIDSFDKHNYGYINDQVIKHRDLIRMLLMKQDAFLTENNKIDLFTDGHKLYEKVLEDIYNAQDYIHLEYYTFELDGLGKRILDALETKLKEGLEVKLLYDDVGSKKVRLSKFKHFRALGGEVEAFFPSKVPLINFRMNNRNHRKIIIIDGQIGYVGGFNVGDDYLGLGKLGYWRDTHTRVQGECIDALQLRFILDWNSQSHRPQFKFDQKYFPKKNGDKGNAAIQIASSGPAFDLHQIEYGYTKMIMSAKKSIYLQSPYFIPDQSYINALKMAANSGVEVNLMIPCKPDHPFVYWATFSNAADLLDSGVNIYTYQNGFIHSKILMIDDEISSIGSANMDFRSFELNFEVNAFIYDEDIAKQLRQAFEKDIEQSKLLTKEVYDKRPLSIKFKEGLAKLISPIL*	common_virus_hmm	common_virus	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0009	persistent	direct	high	1472	0.999	GCA_006742205.1_01480
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1529722	1529919	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	8597	8794	GCA_006742205_1_1_1401	GCA_006742205_1_1_1401	-	2422602	.	.	hypothetical protein	MQQIKFKTLTEETLESLEKSVNSFLKSQEGNGYKLLNITIKQIEERAFPHNDEDFNAILTLVTEA*	.	hypothetical_protein	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0010	persistent	direct	high	197	0.995	GCA_006742205.1_01481
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1530233	1531258	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	9108	10133	GCA_006742205_1_1_1402	GCA_006742205_1_1_1402	+	2422602	.	COG2008	Threonine aldolase [Amino acid transport and metabolism]. 	MISFENDYLEGAHEKVLNRLVETNRIQAAGYGFDDFSAQAADKIRQRIDCPDATIRFLVGGTQTNQVVINSMLDSYEGVISADTGHVAVHEGGAIEFSGHKVLTIPSQEGKITAQDVENYIETFESDFKKEHMVYPGMVYISHPTEYGTLYTKEELQSLSRVCRRHQIPLFMDGARLGYGLMSNQTNVTIEDVAKYCDVFYIGGTKIGALCGEAIVFTKQNEPKNFTTIIKHHGALLAKGRLTGVQFLELFTDDLYFDISRHAIKMAEKVKKGFIDKGYQVYFDSPTNQQFFILSNDKIEELKQKVKFAVWEKYDNQHRVVRFATSWATTEENVNQLLELI*	mmseqs_cdd	nonviral_gene	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0011	persistent	direct	high	1025	0.999	GCA_006742205.1_01482
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1531328	1532011	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	10203	10886	GCA_006742205_1_1_1403	GCA_006742205_1_1_1403	+	2422602	.	pfam07553	Host cell surface-exposed lipoprotein. This is a family of lipoproteins that is involved in superinfection exclusion. Proteins in this family have been shown to act at the stage of DNA release from the phage head into the cell.	MQQERQSWYQKSWFIILTLLFIFPLGLFLMWRYAHWKNWLKLTVSSVYIISLVLTLLFQVSLLNENKTNQIEHASTMKEKSNINNVKTTKNKNMEKSTQTDKQNSVNLKQNTKDQNNNANDEAASPTSEQNAAIAQAKSYANTLPISKKSLYKQLTSEYGEKYPADIAQYAVDHISVDYKMNALRLAKSYVKNINISNQALYDQLVSENGEGFTPEEAQYAMNHLDR*	mmseqs_cdd	nonviral_gene	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0012	persistent	direct	high	683	0.999	GCA_006742205.1_01483
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1532262	1532645	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	11137	11520	GCA_006742205_1_1_1404	GCA_006742205_1_1_1404	-	2422602	.	PDB:6B0X_d	capsid-scaffolding-protein	MKDAIQEAEKLAKMNKDQKNQYELEKLLKENEELKAEKALSQMKNETRSMLNESGLENFDDQIVNILVNTDAEKTRKNVESFTNLLNQMVKSNVEKALRQDSPVSTQSNKMTKDEESDYLVSGRKCL*	hallmark_hmm	common_virus	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0013	shell	direct	high	383	0.997	GCA_006742205.1_01484
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1532642	1532809	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	11517	11684	GCA_006742205_1_1_1405	GCA_006742205_1_1_1405	-	2422602	.	PFAM:PF14265.5	head-scaffolding-protein	MENNQSNITEETKHNDNLETTYEQTQQKEKTFSQEEVSQMIKDRLARKKRNLNNV*	phrogs_hmm	hypothetical_protein	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0014	shell	direct	high	167	0.994	GCA_006742205.1_01485
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1532970	1533164	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	11845	12039	GCA_006742205_1_1_1406	GCA_006742205_1_1_1406	-	2422602	.	4A54_A	EDC3, MRNA DECAPPING COMPLEX SUBUNIT	MLIKDAYRKNVIVTLKNNEKFKGFVFDYENPLESDTGNYSLDLETDLGIYSIDESEIKSIKLIS*	hhsuite_tools	hypothetical_protein	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0015	shell	direct	high	194	0.995	GCA_006742205.1_01486
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1533166	1533519	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	12041	12394	GCA_006742205_1_1_1407	GCA_006742205_1_1_1407	-	2422602	.	pfam15542	Bacterial toxin 50. A predicted RNase toxin found in bacterial polymorphic toxin systems that is proposed to adopt the BECR (Barnase-EndoU-ColicinE5/D-RelE) fold, and contains two conserved histidine, a serine, two lysine, and a threonine residue and a HxVP motif. In bacterial polymorphic toxin systems, the toxin is usually exported by the type 2, type 6, type 7, and MuF-type secretion systems.	MIRSGKIKLDINPEKQNRHSLNHSLYLKNKNFALKNNERLPSYTTLSINELNRLVQQYSTSGKILINKNGFNHKKVINFERIIGKAFIDGKYIETTFGKVHYSKTDSHIIPFISKEK*	mmseqs_cdd	nonviral_gene	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0016	shell	direct	high	353	0.997	GCA_006742205.1_01487
GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote	cenote	CDS	1533562	1534209	GCA_006742205.1	AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205.1_AP019721.1	GCA_006742205.1|AP019721.1	GCA_006742205_1_1	GCA_006742205_1_1@C98	12437	13084	GCA_006742205_1_1_1408	GCA_006742205_1_1_1408	-	2422602	.	PFAM:PF06152.10	minor-capsid-protein	MKVSREKLLKQQLDLIVKDSALDIHDEIENKLVDREVERQAHILGEHVKIDDTEVKAVVNSNFKGVNWSTRLCQDMAVVQKEVEKTTSNVLLRGRHPNEYVAKFKKQTNTTTYNASRLLVTESACVQAESQKLTYLKDLGEDGEYKYVAKIDKKTSKICHSLNGKVFKVKDMMPGVNAPPMHPWCRSTTVTHVGNWRDRFFTERKGKYQTENKES*	hallmark_hmm	common_virus	C98	13084	1521126	1534210	GCA_006742205.1|AP019721.1@region_1521127_1534210@tool_cenote_CDS_0017	shell	direct	high	647	0.998	GCA_006742205.1_01488