core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	12331	12681	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	1	351	GCA_007667085_1_34_11	GCA_007667085_1_34_11	+	35504	.	COG1733	DNA-binding transcriptional regulator, HxlR family [Transcription]. 	MEETEHPHDSCCPVVNTLDIIGGKWKVLILYYLHGEIRRFNELQRLLAGVTQRMLTLQLRELENDGIVHREVYPQVPPKVEYSLTAFGQTLMPVIEAMHRWGVQYAAECVKHRKQP*	mmseqs_cdd	nonviral_gene	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0001	persistent	direct	high	350	0.997	GCA_007667085.1_00585
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	12812	13297	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	482	967	GCA_007667085_1_34_12	GCA_007667085_1_34_12	+	35504	.	PF13827.6	Domain of unknown function (DUF4189)	MKKTVIALLLAVCAGTAGAADTYGYLVMWQNPADGGSAVQLKTTKENASQLEANAELEAFCRAQDTLSGVQQGQATGCKSVIPLHNTCIALAYPKAQGGLTAENVVAITSPRFKSVHQTALNQCIKKYGTQGQCGLEIAYCTSADLYSGQVRAFWNRLKSL*	hhsuite_tools	hypothetical_protein	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0002	persistent	direct	high	485	0.998	GCA_007667085.1_00586
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	13410	13976	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	1080	1646	GCA_007667085_1_34_13	GCA_007667085_1_34_13	-	35504	.	cd01920	cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A.  E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	MNKTLKLTFAALALATAFNAQAETHAVIETNMGNISLSLDEAKAPKTVANFVSYARKGFYDNTVFHRVIDGFMIQGGGFTPDLAQKATDKAVINEADNGLKNTVGTIAMARTGDPNSATSQFFINTADNAFLNFKNKTPQGYGYAVFGKVTSGMDVVRQISKTPTETHGFHQNVPVKPIIIKRITVTQ*	mmseqs_cdd	nonviral_gene	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0003	persistent	direct	high	566	0.998	GCA_007667085.1_00587
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	14125	14688	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	1795	2358	GCA_007667085_1_34_14	GCA_007667085_1_34_14	-	35504	.	COG2353	Polyisoprenoid-binding periplasmic protein YceI [General function prediction only]. 	MKKIIFAALAAAAIGTASAATYKVDEHHANARFAIDHFNTSTNVGGFYGLTGSVDFDQAKRTGKIDITIPVANLQSGSQHFTDHLKSADIFDAAKYPNIRFVSTKFNFNGKKLLSVDGNLTMHGKTAPVKLKAEKFNCYQSPMAKTEVCGGDFSTTIDRTKWGVNYLVDAGMTKNVRIDIQIEAAKQ*	mmseqs_cdd	nonviral_gene	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0004	persistent	direct	high	563	0.998	GCA_007667085.1_00588
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	14851	17298	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	2521	4968	GCA_007667085_1_34_15	GCA_007667085_1_34_15	-	35504	.	PDB:2IUS_D	DNA-TRANSLOCASE-FTSK	MTAKSSKTASKPKAKTNAKPTTRRQSQTKAQTEPNKVSERLKAAKALQKNEEKKARPEHVVNLINDALWLFGLMVTVFIAISLASFKMTDPAWSRSVPKPDGIANFGGLFGAYVSDVGYYLFGLSFWWWIAASCVFLYKNFRPLQKRENYKSYNHGVAALALFLLLVCSPILEYFTLQNTLDETLPVGAGGLVGALAGSGLAWLLGKSGSLLIMCVMLLLSVSLLAQVSWLEVMAKTGRNTESLFSGIWGRLKKALGRRKDDGSTAEALETENTRRMVKEAKNITATPVAPLAGSTSNRKSVAVSVAPPPKIQASLFEDNEPQQTGEYHKPGMSLLRLPNGEPVSINPAELERTAELIESKLAEFGIGVQVVSATSGPVITRYEIEPAQGIKGSQIVALSKDLARSMSLQAVRIVETIAGKNTMGIELPNEKRQDVMLSEILSSPVFTEAKSKLTVALGKDIAGTPVVGDLAKMPHLLVAGMTGSGKSVGVNGMIMSMLFKATPEEVRFIMIDPKMLELSIYDGIPHLLCPVVTDMREAGQALNWCVAEMEKRYRLLSHAGVRNLESFNQKVEAAKASGKPMPNPFSLNPDDPEPLEKLPMIVVVIDELADLMMTERKAVEQQIARLAQKARAAGIHMIVATQRPSVDVVTGLIKANIPTRMAFTVQSKIDSRTILDQMGADELLKYGDSLFLQPGSAEPTRLQGAFVSDDEVHQVVNYVKSQAPADYIEGLLSGEAALETTNIVNPNAGSDELFDQAVAYILESKKTSISSLQRQLRIGYNRAANLMEALENAGVVSPADINGSRRILAQKDQL*	common_virus_hmm	common_virus	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0005	persistent	direct	high	2447	1.0	GCA_007667085.1_00589
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	17469	18833	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	5139	6503	GCA_007667085_1_34_16	GCA_007667085_1_34_16	-	35504	.	cd10336	solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	MSSNQPRQTWSNRLTYILTVAGATVGFGATWRFPYLVGENGGGAYVFLFCIAMFVIGIPMILVENVIGRRKGVNALDAFGGSMNGKPVAKIWKLVGWMGLIGAFGIMAYYMVLGGWVISYIVNIIGGNLDISSPVSGELTKSFFTEHIENSPWEIAFYTLLFVVVNQWILVKGVIGGIEKAAKYLMPLLFLFLIAMVVRNVTLPGAMEGITFYLKPDFSKITAKLFVFVLGQVFFALSLGFGVMITLSSYLDKNENLVQTAVITAITNTIIAVLAGFMIFPSLFSFGVAPNSGPTLVFQSLPIVFSNMWAGPVFAVIFFSLLLIAALTTSLTIYEVLITTIQEKTKIRRTAAITIVLAAIFIFGNIPSILSYGPWKDVSVFGKNIFDAFDYISGNILFMLTALGSALFVGFVMKDEAKDELLYKGNHTTVNIWFAYVKYLVPLVILLIFVSNLF*	mmseqs_cdd	nonviral_gene	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0006	persistent	direct	high	1364	0.999	GCA_007667085.1_00590
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	19466	19939	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	7136	7609	GCA_007667085_1_34_17	GCA_007667085_1_34_17	+	35504	.	COG3030	Protein affecting phage T7 exclusion by the F plasmid, UPF0716 family [General function prediction only]. 	MQFFGIGFLVLIFLEIMSIVWVADWLGGSVALLLMVISFVSGVFMLRNTGLSGILLAGATIRSGGKVSLYQMLWPIRYAVAAVCLMSPGFISTGLALLLLLPFKGRPVVQAEMDGNMFGQRPFSTKAQDDDVIEGEYTVTSEDSDTKHQAYIEHKKD*	mmseqs_cdd	nonviral_gene	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0007	persistent	direct	high	473	0.998	GCA_007667085.1_00592
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	20125	21081	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	7795	8751	GCA_007667085_1_34_18	GCA_007667085_1_34_18	-	35504	.	PDB:5A21_D	head-to-tail-adaptor	MRNAAGLDISKDTIDAAVVIDDSVQTKKYSNDETGIQQLETWLQTFEDLPVCMEATGNYYEAVADYLAERHTVYVVNPLKISKYAESRFARTKTDKQDAKLIAEYCQTAKEKDLVHRPRPTDDQYRLSRLIAAYAQINQECTAMKNRCEAAKDSEVRAIFKNIIKHLQKQLKTLKTQIQKQTQKPQYQTRIKRLETIPAIGRLTAAVLLQYLTSADFKTPNKFAAFAGLNPQQKQSGTSVKGKEKITRYGNRKLRTALFMPAMVAYRMKAFPAFIARLEAKNKPKKVIITALMRKLAVIAYHVHKKGEDYDPTRYAAA*	hallmark_hmm	common_virus	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0008	cloud	direct	high	956	0.999	GCA_007667085.1_00593
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	21972	23132	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	9642	10802	GCA_007667085_1_34_19	GCA_007667085_1_34_19	-	35504	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MIILQTGVPGSGKTSSVVNMLMTDESYTHFTDKDGVKKKRPLFVNGIPELKIEHEELSDEQIKSQPFQDFLPYGSLVIIDEAQRLMGTRSAASKVPPFIEALATHRHHGLDIVLITQHPSFLDSFVRRLVQRHMHVSIKPVGRKLYEWNECVDQPDSSVNIAKAIERTFVVPKKSFGMYKSAEVHTKPKRRIPKSLIFVVLFIPLLIGFTLYTINNMSKRFGADEQQKTSTTSASDVDGAEPKTSPATADIGQNLKPEDFVPTLAEKPESKPIYNNVRQVKTFEYPVGCVDGGKSGCTCYSAQGTPLKEITKAMCKDYARNGLPFNPYKDEQQAVQQPQAAQQTAYEPENNQVITMGGQSPKNLMYDGYVEAGQQFAQRGGVVGER*	hallmark_hmm	common_virus	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0009	cloud	direct	high	1160	0.999	GCA_007667085.1_00595
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	23129	23422	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	10799	11092	GCA_007667085_1_34_20	GCA_007667085_1_34_20	-	35504	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MQAAFFAILQRLLTYIVVKVFIALGISFVTFTGFTVGLGFVKDYISNQFNSMPSDILQIIMMAGFGHALGLIFGAFAFNVAMQSISKLSFIPGGGNK*	hallmark_hmm	common_virus	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0010	cloud	direct	high	293	0.997	GCA_007667085.1_00596
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	23426	24991	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	11096	12661	GCA_007667085_1_34_21	GCA_007667085_1_34_21	-	35504	.	PFAM:PF05616.12	attachment-protein	MGNGVNAKVDDGFNKLINRTYTPHFEKYVSNQSSSAEIIHSSTGLRSASTVPVTVQRTVPKSTVFRNLLARARVGGKYVAQRAAGKLGAGLLGGPAGWAITAALTAYDLASPIAASEGYYYDDKYQDFVKTKTFVYCVAISGLCTDQKEEETVMNPRAVYADMETNPSDAEINKKLCSQLDVKHFNFEYPDRFSKKNTKFNRKSNVCVVEFNVLKDVGFLQAGKTILDETRPMERVPKVKEPIPQSVFDKAVQPSADASPSKYVGATANQDGSVPGESMGNPTVSNGTVVTLGPATGPDGKPVQVTITFNTPSGGSTSADVKVTPRPDLTPGSPAAPNYTPAPVPSPTPNPTPGGQPSPNPDGKPGSQPDPTPDGSPSDKTKPDPDGSPGSKDKPDQNSTPDGKDDPKPDDKPKEDDKPKESGGLLCEVFPNILACAEKGDIEEQEEPFKIPHTQNETTFSPDFFLPDNGVCPAPRTATYLGITMEFKYDLICRFAEMIRFLVIGIAAVVAAFIMFSSRKD*	common_virus_hmm	common_virus	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0011	cloud	direct	high	1565	0.999	GCA_007667085.1_00597
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	25020	25322	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	12690	12992	GCA_007667085_1_34_22	GCA_007667085_1_34_22	-	35504	.	.	hypothetical protein	MFDLNINEEYLAKRKYNQLDEYYGMSMAYIYCDLISQNSRFAGSDFYALCRNFSHRFLGAYLEIRFPDYSIAVYKIGSGNGVLLSKVFTADIECFNNMFE*	.	hypothetical_protein	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0012	cloud	ambiguous	low	66	0.218	GCA_007667085.1_00597
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	25375	25611	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	13045	13281	GCA_007667085_1_34_23	GCA_007667085_1_34_23	-	35504	.	.	hypothetical protein	MEDDFEYEQGASYGGADYGFGDFMEPDPDYETHEEYMERVWSDGYDKNQDYLNFLIDAGLMPEDSTVEDMIDSGYGSF*	.	hypothetical_protein	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0013	cloud	direct	high	236	0.996	GCA_007667085.1_00598
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	25693	25971	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	13363	13641	GCA_007667085_1_34_24	GCA_007667085_1_34_24	-	35504	.	.	hypothetical protein	MGYQVGNNCYATRQDAENVYFSLVPPKIGEDGKLIQLQASKLGWILNGQVVKAELPECNPIDSMRDGSYIGWSVVAIMAAVWGMKLLWQKLR*	.	hypothetical_protein	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0014	cloud	direct	high	278	0.996	GCA_007667085.1_00599
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	25971	26426	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	13641	14096	GCA_007667085_1_34_25	GCA_007667085_1_34_25	-	35504	.	.	hypothetical protein	MSIIETLSKEFGYSLADIKEIGGYVLSAYGGLLGIALIRSVIDGRKAKAVAERKERREEIRERLDEIRLRLAEIRLEKAEAEIKAHEAEESSDEHEECEDRRRTQEEALAVYEELVAEEQELEAQEQEFETIANGIGEDEDDDGVYIYKDC*	.	hypothetical_protein	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0015	cloud	direct	high	455	0.998	GCA_007667085.1_00600
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	26483	26701	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	14153	14371	GCA_007667085_1_34_26	GCA_007667085_1_34_26	-	35504	.	PFAM:PF10389.8	coat-protein-B	MKLMNICRKYGAKLAVVAAAPMALAGQAWAEVPESVKTDLATAKTDALSVAAIVLGIIASIFAITLIRRVLR*	hallmark_hmm	common_virus	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0016	cloud	direct	high	218	0.995	GCA_007667085.1_00601
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	26772	26969	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	14442	14639	GCA_007667085_1_34_27	GCA_007667085_1_34_27	-	35504	.	.	hypothetical protein	MQKVYVVQSVSTGDFLYLSPETGDIGHTKLITNADYFYDFEDAVNAGLEEIGNQFEFVVFGFLKD*	.	hypothetical_protein	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0017	cloud	direct	high	197	0.995	GCA_007667085.1_00602
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	26974	27264	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	14644	14934	GCA_007667085_1_34_28	GCA_007667085_1_34_28	-	35504	.	PFAM:PF07459.10	RstB-protein	MNIQLQGHIVGVKKFNGQIEGKNFDYCRLIVATPLDSSQGNALGSSTTEYDFGGSANFEQFRNAQFPIEANLNVEIVTTGKTQKLKVIGFQPVKKG*	common_virus_hmm	common_virus	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0018	cloud	direct	high	290	0.997	GCA_007667085.1_00603
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	27310	28656	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	14980	16326	GCA_007667085_1_34_29	GCA_007667085_1_34_29	-	35504	.	PFAM:PF02486.18	Replication-initiation-factor	MKDNREDLQKAATADMADASADGRAADDASNPPPLSNRGGTETEDAPVFQEAFECYETYILDGKGNLLGVPLRRGISDSAFIDQITFSIHEDTFFHMYGISMDLFDDEDFIRAASSKAEEIFGFGIIEKAKHTGGRFYDSCWIMGSDNAQYGRVHFGGQNNTMLFEITGVGCTAAKEGWESRLYSFLTNAIRPKITRVDIAKDFFNGEYSPNQAREDRNKGLFTCHHVKPKGECIGSDWEEDDEAKMTKGKTYGIGSRESSKYVRVYQKGKQLGDKSSNWTRFEIEFKSKDIIIPFEVLQNPGEYFGGAYPICECFSKQAQRIEAVKSTLEITFERYVAWMKDQMGRGMNALKSMFPQKSKQDLWEMIEPEHDLLPKRLSLEAYDCRELKVTPVHDMPFVPKIDEYGMYFERFMQRQQRAHLLRSQVEDEAYNGMMYDEHAELPLSWA*	rep_hall_hmm	common_virus	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0019	cloud	direct	high	1346	0.999	GCA_007667085.1_00604
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	28802	29362	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	16472	17032	GCA_007667085_1_34_30	GCA_007667085_1_34_30	-	35504	.	.	hypothetical protein	MKKIIALAALSAFALAACKDNTQAQLEQQQKQIEALQQQLAQQNGQQDNTVYQLTPEAVQDTIPAEAQANGNNGQPVTGKDGQQYIYDQSTGSWLLQSLIGTAAGAFIGNALANKFTRANNQNSPIAQRARTHYYQSARPNGRTSQQLNTRSIPAQQAQQQPRYRQTTQQPSNYRRPMGRGFGRRR*	.	hypothetical_protein	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0020	persistent	direct	high	560	0.998	GCA_007667085.1_00605
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	CDS	29493	29993	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	17163	17663	GCA_007667085_1_34_31	GCA_007667085_1_34_31	-	35504	.	.	hypothetical protein	MNLSANIQRRPQTLHRCHMIVDGNSHNTFSDDPVPQTSGLISEALIPQIRSLATLIAAERHDFNCNSPAVFTEEADFFAARILILGVRRFHLDITLMPMLKTANQRAQTFAKHHHLPFSPAEMHMSLHARRPDKLLIMETEHEVKPQGNIVADSLAFAAKLPKLPL*	.	hypothetical_protein	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_CDS_0021	persistent	direct	high	500	0.998	GCA_007667085.1_00606
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	10481	11467	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	1	987	GCA_007667085_1_44_12	GCA_007667085_1_44_12	+	29164	.	COG0760	Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]. 	MNVKPLILAAALGLALNAHAAPNAKTVKKSVKPVAVQTTDTETRSDGVRLSDGIAAIADNEVITRRQLAQAVERARRTIPKGTQIGDNELREQVLAQLINQSLIVQAGKRKNIQADNAEIEAVIAANPSLKNPSASIRREIADSIIAEKVRQQAVMQHSRISDAEVARAIEQAKQQGIALPEGEPLRQYNAQHILIKADNENAAAGAESTIRKIYAQARSGADFAGLARQYSQDGSASSGGNLGWFADGMMVPPFEEAVHKLKPGQVSPPVRTQFGWHIIKLNDVRDAGTPEERQHNTIRQYLSRQKAEQAEINLLRELHEGAHIDIR*	mmseqs_cdd	nonviral_gene	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0001	persistent	direct	high	986	0.999	GCA_007667085.1_00979
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	12167	13129	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	1687	2649	GCA_007667085_1_44_13	GCA_007667085_1_44_13	-	29164	.	PFAM:PF01548.16	Transposase	MNTIGLDISQKTIDATLHKTDGSTYHTKVGNNREGLQSLKDWIKANKVRKCVIGMEATGIYYEDAAENLSETHTVYVINPLKIKDYGKSQFNRTKTDKADSNLIAEYTKRHADKIIPYSKPKNRYLQKLINLKQQLKDHQKQTKNRLHSSDDEMIQAIHQDLIQTYQEKIDQTQAAIEAQIKEKAEIDGHYRNLQTIVGIGKDTAAILYAQLTDKTFQTANQFVSYAGLSPQTEQSGTSVHKKGRLSRYGHRRVKRSLYMPALVAYRTGAFPQLVRNLTNAGKPKMVIIVAIMRKLAKLAYYIVKTGKPYDSTRHRAAQA*	common_virus_hmm	common_virus	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0002	cloud	direct	high	962	0.999	GCA_007667085.1_00980
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	13177	13335	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	2697	2855	GCA_007667085_1_44_14	GCA_007667085_1_44_14	-	29164	.	.	hypothetical protein	MPKPKPANRFKKDSLRVFVYAQSKDRGGQADKRPGQQSRKKDMPTAFYHPEN*	.	hypothetical_protein	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0003	.	unmatched_CDS	none	0	0	.
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	13447	14649	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	2967	4169	GCA_007667085_1_44_15	GCA_007667085_1_44_15	-	29164	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MAEICLITGTPGSGKTLKMVSMMANDKMFQPDENGISRKVFTNIKGLKIPHTYIETDAKKLPRSTEDQLSAHDMYEWIKKPENIGAIVIVDEAQDVWPARSAGSKIPENVSWLNTHRHLGIDIFVLTQGPKLLDTNLRTLVRKHYHIAANKMGMRTLLEWKICADDPIRMAKQAFSSIYTLDKKVYDLYESAEVHTVNKVKRSKWFYALPVILLLVPVFLGLSYTMLRNYGKQPEQEQTQELAASDVNKAASEVQAQTAATATQTGGDLTAEMFVPKLAEKPESKPIYNGVRQVKTFEYIAGCVDGGKSGCTCYSAQGTPLKEITKAMCKDYARNGLPFNPYKDEQQAAQQQQNTPKTAYTPESGQVLTMGGQPPQNLMYDGYTEAGQQFAQRGGVVATP*	hallmark_hmm	common_virus	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0004	cloud	direct	high	1202	0.999	GCA_007667085.1_00981
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	14649	14933	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	4169	4453	GCA_007667085_1_44_16	GCA_007667085_1_44_16	-	29164	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MKLLAALLPLLLSVAGRIMTALGLMAVTYKGVDIMVSRFQQAITDSVTGAPQAMLQLFYISGGGTVLNILFGAIAFILSFKQMTKLATAIGKKK*	hallmark_hmm	common_virus	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0005	cloud	direct	high	284	0.996	GCA_007667085.1_00982
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	15399	17057	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	4919	6577	GCA_007667085_1_44_17	GCA_007667085_1_44_17	-	29164	.	PFAM:PF05616.12	attachment-protein	MVKFQRLIIMAVILLGFNFKVQAELVVEPNGRMRVPTGGFNQNGVRTWRYLDNGRGGMGGNMFYHEIGSKSLAVREASTGLRSASTVPVTIESRVSKSTVFRNLLARARVGGKYVAQRAAGRLGAGLLGGPAGWAITAAITAYDLASPIAASEGYYYDEKYEDFVKPVTYVYCVAGSGLCTDQRVQETVMNSKAVYADMGPNPSDAEINKKLCEQLDVQHFGFEYPDRYSKKDNKFNRQNNTCVVEFNVLKAVGYLQPGKTTTSETRSMERVPKVKEPISQATFDKAVQPSADASPSKYVGATANQDGSVPGETQGNPTVPNGTVVTLGPATGQDGRPFQMTISFTGANGNTTATVTTTPRPDLTPGSPAAPKTNPTPTPGGSGNSGSDGKPGEDGKPGADGKPGADGKPGADGKPGADGKPGADGKPGEDGKPGEDDKPKEEEKPKDGGLLCEVFPNILACDKQPEAGEEPDLTLPEEVINVEFEKSSAFQESAECPAPVTFNVTVLGASKTFAFSFEHACEIASRLRYMLVALAWVVAAFFCIRAVSREV*	common_virus_hmm	common_virus	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0006	cloud	direct	high	1658	0.999	GCA_007667085.1_00983
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	17005	17325	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	6525	6845	GCA_007667085_1_44_18	GCA_007667085_1_44_18	-	29164	.	.	hypothetical protein	MFYISEEELRFKKDTNPDYLNEKLCHVFIAEMFRLKEIYPISDFKNIVKNAAQYFLNRTYLNDMLVFFEDGSYLKFQFLEHGFECKEFYDGQISTAYYYGRYSIRI*	.	hypothetical_protein	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0007	cloud	direct	high	320	0.997	GCA_007667085.1_00984
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	17442	17747	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	6962	7267	GCA_007667085_1_44_19	GCA_007667085_1_44_19	-	29164	.	.	hypothetical protein	MGFRVGINCFDTRLQADDYLLSALPPTITAEGKIIRAERQQNGWTLEGQPVKLSYPECSAVEQVKDGASVGAAFLLLLASIYAFRLLVGFVKDFGRIQGDS*	.	hypothetical_protein	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0008	cloud	direct	high	305	0.997	GCA_007667085.1_00985
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	17767	17997	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	7287	7517	GCA_007667085_1_44_20	GCA_007667085_1_44_20	-	29164	.	.	hypothetical protein	MNIIKKHAAKLAIAAALLTPFAASAEGFDAGAIGTQVASVIMGFVAMVSAVGMAAITVILAIQGFKMAWSMIKGVK*	.	hypothetical_protein	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0009	cloud	direct	high	230	0.996	GCA_007667085.1_00986
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	18223	18423	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	7743	7943	GCA_007667085_1_44_21	GCA_007667085_1_44_21	-	29164	.	.	hypothetical protein	MKYKERFIVQDLESHEFIYPDPFGDTGFTQNLKSAGHFESYEDAFNAGMEEIGGGFQIFAFYLKEE*	.	hypothetical_protein	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0010	cloud	direct	high	200	0.995	GCA_007667085.1_00987
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	18427	18744	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	7947	8264	GCA_007667085_1_44_22	GCA_007667085_1_44_22	-	29164	.	PFAM:PF07459.10	RstB-protein	MFNQNQIITYPATFLGAKKFKGEIDGSQIDSCSVLVATPLPSQSGNAVGFTAAQMKFGSSDNFAKLANLSFPCEVMITVEMTSTGKGMVPTLKEFQVQTEAKPKG*	common_virus_hmm	common_virus	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0011	cloud	direct	high	317	0.997	GCA_007667085.1_00988
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	18759	20123	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	8279	9643	GCA_007667085_1_44_23	GCA_007667085_1_44_23	-	29164	.	PFAM:PF02486.18	Replication-initiation-factor	MSQIEYFSHFITDERGKLIEVPQRRGIQDGVFIDWLSITFHQDTLVKIAGCPLVSDTEYMYVLSRKLEEILGFGITRKCKSKGNKFYESMYRLGSDDVDYGEVHYGGQRDTVLIELKGVGCNLAQAGWEARMRQFLENAVRPRITRIDLALDFFDGQYTPERALLDHDNGFFDNHNMRPKSEIVGSAWRKEDGTGKTFYVGRKKNSRFVRVYEKGRQLGDKDSPWVRFEIQFNHGDIEIPFEILTDEGGYFCGAFPICSNFKNMPQEKRFEPRSKALNLTFGHKLKHAKNAVGKLVNFMSDLGFTAEEIVRQLKAEQGYPKGLEPEKYDLNELRQAEKSGFIHESAEAALDFEVMALDLDSVGFKLSDGYDPHKRLFDVQYEEDRKRKEDEAYERWLQSNYEEGFPLAEQMKRRTARWHEETARNRLKNSKYRQYHGEYRAYTKKPVKFDWYDF*	rep_hall_hmm	common_virus	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0012	cloud	direct	high	1364	0.999	GCA_007667085.1_00989
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	20632	20730	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	10152	10250	GCA_007667085_1_44_24	GCA_007667085_1_44_24	-	29164	.	.	hypothetical protein	MSVSVLFLEAIVAVGLASVAAIGILWAGGADW*	.	hypothetical_protein	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0013	persistent	direct	moderate	98	0.99	GCA_007667085.1_00990
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	20991	21617	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	10511	11137	GCA_007667085_1_44_25	GCA_007667085_1_44_25	+	29164	.	cd03392	PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	MPDFFLFFRRFVQTAIVVFLPLSVYIAAHLANGGSFAFERPLMLVIHEQTGQWFFPIALLLHYLGKTAVAVPLVCLAAVCLWRFGKLRAAVFVPLAALLPTLNMLWIKAWIQRPRPLLWPRAVEEANFSFPSGHSTFSAAVAVMLILLCYRTAYRRTAFAVGILFALLTGFSRVYLGVHYPTDVWAGWTNGTLTALLVYYVVFKKDFE*	mmseqs_cdd	nonviral_gene	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0014	persistent	direct	high	626	0.998	GCA_007667085.1_00991
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	21617	22567	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	11137	12087	GCA_007667085_1_44_26	GCA_007667085_1_44_26	+	29164	.	COG0429	Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]. 	METLCPNTPLWLRNGHADTIFAKFIQRPAPAYRRELLPDSTGRTLVACDFVDAADPDAPLVVLFHGLEGSSRSHYAVELMRAVIEKGWNGVVVHFRSCGGVENTAPVFYHLGDTREISFMLEMLSERYRRIYAAGVSLGGNALAKYLGEYGSLGMAAVPYAAAAVSAPVDAAAAGTRFDKGMSKLLYTRYFLKSLLPKAAATGFQTTSLKECKTLGDFDDRFTAPLHGFADRHDYYRRASCKPWLKTVRTPLLLLNAVNDPFLPPKALPTVEEVSSAVTLLQPQYGGHAAFVSHDKGRLNLQWLPQTLLAYFEAFE*	mmseqs_cdd	nonviral_gene	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0015	persistent	direct	high	950	0.999	GCA_007667085.1_00992
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	22649	23623	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	12169	13143	GCA_007667085_1_44_27	GCA_007667085_1_44_27	+	29164	.	COG0616	Periplasmic serine protease, ClpP class [Posttranslational modification, protein turnover, chaperones]. 	MQETNGYPDKRPDSPEGRWERDVLRDVLLAAYKEQRRARFWRNFWRIIGVLLIAALWFGSDDGTAGQGLAAGKEHTAVITLEGEIGGGMDDQVKMLRDSMEAAYSNPNAKGIVIRANSPGGSPVISNTAFNEIRRLKGEHKDIPVYVVAEDMCASGCYYIAAAADKIYADPSSIVGSIGVIGGGFDVTGLMDKLGIKRRLKTAGSNKGMGDPFTPETPEQAKIWEAMLSDIHQEFIKAVKLGRGEKLKDKEYPDVFSGRVYTGLEAKKVGLIDDFGSVYSIARDVVKAPELVSYTPEDDFGKFVRRHFGAQVKAEVEKTLSKMW*	mmseqs_cdd	nonviral_gene	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0016	persistent	direct	high	974	0.999	GCA_007667085.1_00993
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	24015	25151	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	13535	14671	GCA_007667085_1_44_28	GCA_007667085_1_44_28	-	29164	.	PDB:1GH6_A	Large-T-antigen	MSNQDFYATLGVARGASDDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEVQKAYDTLSDKEKRAMYDQYGHAAFEQGMGGGAGGFGGFGGFGGAQGFDFSDIFSQMFGGGGGGGRQQNYQGADLQVGVEITLEDAAKGIKKRINIPTYEECDVCHGSGAKPGTSASTCSTCHGSGTVHVRQAIFQMQQTCPTCHGTGKEIKDPCVKCRGEGRTKTSKTVEVNIPAGIDDGQRIRLSGEGEPGTHGAPAGDLYVNVRVKEHKIFERNGLDLHCELPISFAVAALGGEVEVPTLDGKVKLSIPKETQTGRRMRVKGKGIKSLRSSATGDLYCHVVVETPVNLTDRQKELLEEFEKISTGLDRSQTPRKKSFWDKVGELFD*	rep_hall_hmm	common_virus	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0017	persistent	direct	high	1136	0.999	GCA_007667085.1_00994
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	25303	25638	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	14823	15158	GCA_007667085_1_44_29	GCA_007667085_1_44_29	-	29164	.	.	hypothetical protein	MKYTLSLLMILTLSACGVVGNTTISDNSLKNKAAFALNVPAESISISNRHGDIDSVKFVATTGDKSYSCYVTTVMGAVSSDALCSGSNVHGGKGSRGGSSCNALLKAAGRC*	.	hypothetical_protein	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0018	cloud	direct	high	335	0.997	GCA_007667085.1_00995
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	25835	28567	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	15355	18087	GCA_007667085_1_44_30	GCA_007667085_1_44_30	+	29164	.	COG0495	Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. 	MQEHYQPAAIEPAAQKKWDDARIFNVSEDASKPKYYCLSMFPYPSGKLHMGHVRNYTIGDVLSRFKLLNGFNVMQPMGWDAFGMPAENAAMKNNVAPAAWTYDNIEYMKTQLKSLGFAIDWEREVATCKPEYYRWEQWLFTKLFEKGIVYRKNGTVNWDPVDQTVLANEQVIDGRGWRSGALIEKREIPMYYFKITDYAEELLNDLDKLEHWPEQVKTMQRNWIGKSRGMTVRFAVSDDSKQGLEGDYAKFLQVYTTRPDTLMGATYVAVAAEHPLATAAAADKPELQAFIAECKAGSVAEADMATMEKKGVPTGRYVVNPLNGDKLEVWIANYVLWGYGDGAVMAVPAHDERDFEFATKYNLPKKQVLQRVTIGLSPEQEEAMGFGGGSGCGAGYGDGSGSDSRDLPFTPNKWQAWYGVKDDFMVLINSGELDGMNYQTAFDAVAAKLQVIGAGEPKTQYRLRDWGISRQRYWGCPIPIVHCEKCGDVPVPADQLPVVLPENVVPDGMGSPLAKMPEFYETTCPCCGGAAKRETDTMDTFMESSWYFFRYMSPKFSDGMVDPAAAKYWGAVDQYIGGIEHAILHLLYARFFTKLMRDEGLVSVDEPFERLLTQGMVVCETYYRENAKGGKDWINPADVELTFDDKGRPVSAVLKADGLPVVISGTEKMSKSKNNGVDPQELINAYGADTARLFMMFAAPPEQSLEWSDSGVEGAHRFLRRLWRTVYEYLKQGGTVKAFAGSQDGLSKELKDLRHKLHATTAKVSDDYGRRQQFNTAIAAVMELLNQYDKTDTGSEQGRAVAQEVLETAVRLLWPIVPHICETLWSELNGAKLWEAGWPTVDEAALVKSEIEVMVQVNGKLRGKITVAADASKADLEATALATEGAVKFMEGKPAKKIIVVPGRLVNIVV*	mmseqs_cdd	nonviral_gene	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0019	persistent	direct	high	2732	1.0	GCA_007667085.1_00996
GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote	cenote	CDS	28707	29162	GCA_007667085.1	VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085.1_VDQK01000030.1	GCA_007667085.1|VDQK01000030.1	GCA_007667085_1_44	GCA_007667085_1_44@C1	18227	18682	GCA_007667085_1_44_31	GCA_007667085_1_44_31	+	29164	.	pfam06044	Dam-replacing family. Dam-replacing protein (DRP) is an restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis.	MNLFFDTELGKQQNKATHKIRVMSEAWLEKNGYCPCCGSKPMQRFTNNKPVADLFCPNCHEQYELKSKNQKTVGNSVPDGAYHTMLERIQSDTNPNFFFLAYKKADYSIQQLVLVPKHFITPDMIIPRNKGIIVNQNKKYIILSLNSTPYPF	mmseqs_cdd	nonviral_gene	C1	18684.0	10481	29165	GCA_007667085.1|VDQK01000030.1@region_10482_29165@tool_cenote_CDS_0020	.	unmatched_CDS	none	0	0	.
GCA_007667085.1|VDQK01000105.1@region_1_2463@tool_cenote	cenote	CDS	55	546	GCA_007667085.1	VDQK01000105.1	GCA_007667085.1|VDQK01000105.1	GCA_007667085.1_VDQK01000105.1	GCA_007667085.1|VDQK01000105.1	GCA_007667085_1_6	GCA_007667085_1_6	56	547	GCA_007667085_1_6_1	GCA_007667085_1_6_1	-	2463	.	PFAM:PF08273.11	primase-helicase	MKPTYQDIKAAAQYRWQEIHAAIGIDPRYLKNKHQPCPACGGKDRFRYNDKDGNGTFICSHYHNGAGDGFGLVMHYLNCGFDEALRAVAGVLNMGGANPLQIPPTRPQTQPRPEKDQIGKLAALWDGAEPITADSPAVQYLKSRGLDMAQLPENVRFLREADY*	rep_hall_hmm	common_virus	NaN	.	0	2463	GCA_007667085.1|VDQK01000105.1@region_1_2463@tool_cenote_CDS_0001	shell	direct	high	491	0.998	GCA_007667085.1_00012
GCA_007667085.1|VDQK01000105.1@region_1_2463@tool_cenote	cenote	CDS	543	803	GCA_007667085.1	VDQK01000105.1	GCA_007667085.1|VDQK01000105.1	GCA_007667085.1_VDQK01000105.1	GCA_007667085.1|VDQK01000105.1	GCA_007667085_1_6	GCA_007667085_1_6	544	804	GCA_007667085_1_6_2	GCA_007667085_1_6_2	-	2463	.	.	hypothetical protein	MFDIFGALGHGGHEIMKPTDKNDRFRRYFNRALLVFWVLLMALAIRACNQPAHAETDQAIQTTPTIWETDPMAGVVLEPVTGEAEQ*	.	hypothetical_protein	NaN	.	0	2463	GCA_007667085.1|VDQK01000105.1@region_1_2463@tool_cenote_CDS_0002	shell	direct	moderate	216	0.828	GCA_007667085.1_00013
GCA_007667085.1|VDQK01000105.1@region_1_2463@tool_cenote	cenote	CDS	895	1143	GCA_007667085.1	VDQK01000105.1	GCA_007667085.1|VDQK01000105.1	GCA_007667085.1_VDQK01000105.1	GCA_007667085.1|VDQK01000105.1	GCA_007667085_1_6	GCA_007667085_1_6	896	1144	GCA_007667085_1_6_3	GCA_007667085_1_6_3	-	2463	.	.	hypothetical protein	MQSSNSIQIQDIRRQVKQGFYAIVHEPTAYLADIDVHSCTARRLGIYPSHAAAAACQSFIASLSDDLKAWAAYSVTTAEQIR*	.	hypothetical_protein	NaN	.	0	2463	GCA_007667085.1|VDQK01000105.1@region_1_2463@tool_cenote_CDS_0003	shell	direct	high	248	0.996	GCA_007667085.1_00014
GCA_007667085.1|VDQK01000105.1@region_1_2463@tool_cenote	cenote	CDS	1438	1998	GCA_007667085.1	VDQK01000105.1	GCA_007667085.1|VDQK01000105.1	GCA_007667085.1_VDQK01000105.1	GCA_007667085.1|VDQK01000105.1	GCA_007667085_1_6	GCA_007667085_1_6	1439	1999	GCA_007667085_1_6_4	GCA_007667085_1_6_4	-	2463	.	PFAM:PF03592.15	Terminase-small-subunit	MTPKQEQFARLYVETGNASEAYRQAYNTDNMKPETVTNEAYKLLQDPDISAMVDGLKEEARRRHAVTVGDLLHELEQARAAALAAPTPQSSAAVSATMGKAKMLGLLVDKAEIKAETEIQEKPQSRIESIVDSLTEEEKKAILDLALKTHRGKWEAVTLADLTAVTGKDPDKVYYAVLLITALDGI*	hallmark_hmm	common_virus	NaN	.	0	2463	GCA_007667085.1|VDQK01000105.1@region_1_2463@tool_cenote_CDS_0004	cloud	direct	high	560	0.998	GCA_007667085.1_00015
GCA_007667085.1|VDQK01000105.1@region_1_2463@tool_cenote	cenote	CDS	2067	2378	GCA_007667085.1	VDQK01000105.1	GCA_007667085.1|VDQK01000105.1	GCA_007667085.1_VDQK01000105.1	GCA_007667085.1|VDQK01000105.1	GCA_007667085_1_6	GCA_007667085_1_6	2068	2379	GCA_007667085_1_6_5	GCA_007667085_1_6_5	-	2463	.	.	hypothetical protein	MFIAGIEETHLPEYLEAAQAYAKAAAKLVGIGKAAALTRMKLQENGLRVDCPSYGQSLPNRIIDLRLPGFFNMMDGTGGEENAIFDILEDVEKEKEAALDNLK*	.	hypothetical_protein	NaN	.	0	2463	GCA_007667085.1|VDQK01000105.1@region_1_2463@tool_cenote_CDS_0005	shell	direct	high	311	0.997	GCA_007667085.1_00016
GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote	cenote	tRNA	19123	19196	GCA_007667085.1	VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085.1_VDQK01000021.1	GCA_007667085.1|VDQK01000021.1	GCA_007667085_1_34	GCA_007667085_1_34@C1	6793	6866	tRNA-Pro	tRNA-Pro	-	35504	.	tRNAscan-SE score: 72.8	Pro	NA	tRNAscan-SE	.	C1	17663.0	12331	29994	GCA_007667085.1|VDQK01000021.1@region_12332_29994@tool_cenote_tRNA_0001	.	.	.	.	.	.