core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	genomad_gene	genomad_length	genomad_strand	genomad_gc_content	genomad_genetic_code	genomad_rbs_motif	genomad_marker	genomad_evalue	genomad_bitscore	genomad_uscg	genomad_plasmid_hallmark	genomad_virus_hallmark	genomad_taxid	genomad_taxname	genomad_annotation_conjscan	genomad_annotation_amr	genomad_annotation_accessions	genomad_annotation_description	genomad_element_name_std	genomad_element_name_orig	genomad_element_gene_wrt_to_contig	genomad_element_gene_wrt_to_element	genomad_element_gene_start	genomad_element_gene_end	genomad_protein_translation	genomad_phage_region_id	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad	genomad	CDS	85	396	GCA_007667125.1	VDQM01000109.1	GCA_007667125.1|VDQM01000109.1	GCA_007667125.1_VDQM01000109.1	GCA_007667125.1|VDQM01000109.1_1	312	1	0.487	11	None	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad	GCA_007667125.1|VDQM01000109.1	1	1	85	396	MFIAGIEETHLPEYLEAAQAYAKAAAKLVGIGKAAALTRMKLQENGLRVDCPSYGQSLPNRIIDLRLPGFFNMMDGTGGEENAIFDILEDVEKEKEAALDNLK	GCA_007667125.1|VDQM01000109.1	GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad_CDS_0001	shell	direct	high	312	1.0	GCA_007667125.1_00023
GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad	genomad	CDS	465	1025	GCA_007667125.1	VDQM01000109.1	GCA_007667125.1|VDQM01000109.1	GCA_007667125.1_VDQM01000109.1	GCA_007667125.1|VDQM01000109.1_2	561	1	0.512	11	AGGA	GENOMAD.087501.VV	1.461e-26	109	0	0	1	1246	Caudoviricetes	NA	NA	PF03592;COG3728;K07474	Phage terminase, small subunit	GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad	GCA_007667125.1|VDQM01000109.1	2	2	465	1025	MTPKQEQFARLYVETGNASEAYRQAYNTDNMKPETVTNEAYKLLQDPDISAMVDGLKEEARRRHAVTVGDLLHELEQARAAALAAPTPQSSAAVSATMGKAKMLGLLVDKAEIKAETEIQEKPQSRIESIVDSLTEEEKKAILDLALKTHRGKWEAVTLADLTAVTGKDPDKVYYAVLLITALDGI	GCA_007667125.1|VDQM01000109.1	GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad_CDS_0002	cloud	direct	high	561	1.0	GCA_007667125.1_00024
GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad	genomad	CDS	1320	1568	GCA_007667125.1	VDQM01000109.1	GCA_007667125.1|VDQM01000109.1	GCA_007667125.1_VDQM01000109.1	GCA_007667125.1|VDQM01000109.1_3	249	1	0.498	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad	GCA_007667125.1|VDQM01000109.1	3	3	1320	1568	MQSSNSIQIQDIRRQVKQGFYAIVHEPTAYLADIDVHSCTARRLGIYPSHAAAAACQSFIASLSDDLKAWAAYSVTTAEQIR	GCA_007667125.1|VDQM01000109.1	GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad_CDS_0003	shell	direct	high	249	1.0	GCA_007667125.1_00025
GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad	genomad	CDS	1660	1920	GCA_007667125.1	VDQM01000109.1	GCA_007667125.1|VDQM01000109.1	GCA_007667125.1_VDQM01000109.1	GCA_007667125.1|VDQM01000109.1_4	261	1	0.521	11	None	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad	GCA_007667125.1|VDQM01000109.1	4	4	1660	1920	MFDIFGALGHGGHEIMKPTDKNDRFRRYFNRALLVFWVLLMALAIRACNQPAHAETDQAIQTTPTIWETDPMAGVVLEPVTGEAEQ	GCA_007667125.1|VDQM01000109.1	GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad_CDS_0004	shell	direct	moderate	216	0.828	GCA_007667125.1_00026
GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad	genomad	CDS	1917	2408	GCA_007667125.1	VDQM01000109.1	GCA_007667125.1|VDQM01000109.1	GCA_007667125.1_VDQM01000109.1	GCA_007667125.1|VDQM01000109.1_5	492	1	0.549	11	GGAGG	GENOMAD.223589.VP	0.0004904	42	0	0	1	1246	Caudoviricetes	NA	NA	PF08273;COG4643;TIGR01391	Uncharacterized domain associated with phage/plasmid primase	GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad	GCA_007667125.1|VDQM01000109.1	5	5	1917	2408	MKPTYQDIKAAAQYRWQEIHAAIGIDPRYLKNKHQPCPACGGKDRFRYNDKDGNGTFICSHYHNGAGDGFGLVMHYLNCGFDEALRAVAGVLNMGGANPLQIPPTRPQTQPRPEKDQIGKLAALWDGAEPITADSPAVQYLKSRGLDMAQLPENVRFLREADY	GCA_007667125.1|VDQM01000109.1	GCA_007667125.1|VDQM01000109.1@region_1_2463@tool_genomad_CDS_0005	shell	direct	high	492	1.0	GCA_007667125.1_00027
GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	genomad	CDS	6844	8190	GCA_007667125.1	VDQM01000058.1	GCA_007667125.1|VDQM01000058.1	GCA_007667125.1_VDQM01000058.1	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034_5	1347	1	0.494	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	GCA_007667125.1|VDQM01000058.1	5	1	1	1347	MKDNREDLQKAATADMADASADGRAADDASNPPPLSNRGGTETEDAPVFQEAFECYETYILDGKGNLLGVPLRRGISDSAFIDQITFSIHEDTFFHMYGISMDLFDDEDFIRAASSKAEEIFGFGIIEKAKHTGGRFYDSCWIMGSDNAQYGRVHFGGQNNTMLFEITGVGCTAAKEGWESRLYSFLTNAIRPKITRVDIAKDFFNGEYSPNQAREDRNKGLFTCHHVKPKGECIGSDWEEDDEAKMTKGKTYGIGSRESSKYVRVYQKGKQLGDKSSNWTRFEIEFKSKDIIIPFEVLQNPGEYFGGAYPICECFSKQAQRIEAVKSTLEITFERYVAWMKDQMGRGMNALKSMFPQKSKQDLWEMIEPEHDLLPKRLSLEAYDCRELKVTPVHDMPFVPKIDEYGMYFERFMQRQQRAHLLRSQVEDEAYNGMMYDEHAELPLSWA	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad_CDS_0001	cloud	direct	high	1347	1.0	GCA_007667125.1_01681
GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	genomad	CDS	8236	8526	GCA_007667125.1	VDQM01000058.1	GCA_007667125.1|VDQM01000058.1	GCA_007667125.1_VDQM01000058.1	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034_6	291	1	0.457	11	AGGA	GENOMAD.142583.VV	3.582e-05	43	0	0	1	2773	Inoviridae	NA	NA	PF07459	CTX phage RstB protein	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	GCA_007667125.1|VDQM01000058.1	6	2	1393	1683	MNIQLQGHIVGVKKFNGQIEGKNFDYCRLIVATPLDSSQGNALGSSTTEYDFGGSANFEQFRNAQFPIEANLNVEIVTTGKTQKLKVIGFQPVKKG	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad_CDS_0002	cloud	direct	high	291	1.0	GCA_007667125.1_01682
GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	genomad	CDS	8531	8728	GCA_007667125.1	VDQM01000058.1	GCA_007667125.1|VDQM01000058.1	GCA_007667125.1_VDQM01000058.1	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034_7	198	1	0.419	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	GCA_007667125.1|VDQM01000058.1	7	3	1688	1885	MQKVYVVQSVSTGDFLYLSPETGDIGHTKLITNADYFYDFEDAVNAGLEEIGNQFEFVVFGFLKD	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad_CDS_0003	cloud	direct	high	198	1.0	GCA_007667125.1_01683
GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	genomad	CDS	8799	9017	GCA_007667125.1	VDQM01000058.1	GCA_007667125.1|VDQM01000058.1	GCA_007667125.1_VDQM01000058.1	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034_8	219	1	0.489	11	AGGA	GENOMAD.115496.VV	3.119e-26	102	0	0	1	2773	Inoviridae	NA	NA	PF05356	Inovirus Coat protein B	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	GCA_007667125.1|VDQM01000058.1	8	4	1956	2174	MKLMNICRKYGAKLAVVAAAPMALAGQAWAEVPESVKTDLATAKTDALSVAAIVLGIIASIFAITLIRRVLR	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad_CDS_0004	cloud	direct	high	219	1.0	GCA_007667125.1_01684
GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	genomad	CDS	9074	9529	GCA_007667125.1	VDQM01000058.1	GCA_007667125.1|VDQM01000058.1	GCA_007667125.1_VDQM01000058.1	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034_9	456	1	0.467	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	GCA_007667125.1|VDQM01000058.1	9	5	2231	2686	MSIIETLSKEFGYSLADIKEIGGYVLSAYGGLLGIALIRSVIDGRKAKAVAERKERREEIRERLDEIRLRLAEIRLEKAEAEIKAHEAEESSDEHEECEDRRRTQEEALAVYEELVAEEQELEAQEQEFETIANGIGEDEDDDGVYIYKDC	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad_CDS_0005	cloud	direct	high	456	1.0	GCA_007667125.1_01685
GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	genomad	CDS	9529	9807	GCA_007667125.1	VDQM01000058.1	GCA_007667125.1|VDQM01000058.1	GCA_007667125.1_VDQM01000058.1	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034_10	279	1	0.513	11	AGGA	GENOMAD.171561.VV	4.057e-25	100	0	0	0	2773	Inoviridae	NA	NA	NA	NA	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	GCA_007667125.1|VDQM01000058.1	10	6	2686	2964	MGYQVGNNCYATRQDAENVYFSLVPPKIGEDGKLIQLQASKLGWILNGQVVKAELPECNPIDSMRDGSYIGWSVVAIMAAVWGMKLLWQKLR	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad_CDS_0006	cloud	direct	high	279	1.0	GCA_007667125.1_01686
GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	genomad	CDS	9889	10125	GCA_007667125.1	VDQM01000058.1	GCA_007667125.1|VDQM01000058.1	GCA_007667125.1_VDQM01000058.1	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034_11	237	1	0.422	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	GCA_007667125.1|VDQM01000058.1	11	7	3046	3282	MEDDFEYEQGASYGGADYGFGDFMEPDPDYETHEEYMERVWSDGYDKNQDYLNFLIDAGLMPEDSTVEDMIDSGYGSF	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad_CDS_0007	cloud	direct	high	237	1.0	GCA_007667125.1_01687
GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	genomad	CDS	10178	10480	GCA_007667125.1	VDQM01000058.1	GCA_007667125.1|VDQM01000058.1	GCA_007667125.1_VDQM01000058.1	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034_12	303	1	0.317	11	None	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	GCA_007667125.1|VDQM01000058.1	12	8	3335	3637	MFDLNINEEYLAKRKYNQLDEYYGMSMAYIYCDLISQNSRFAGSDFYALCRNFSHRFLGAYLEIRFPDYSIAVYKIGSGNGVLLSKVFTADIECFNNMFE	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad_CDS_0008	cloud	ambiguous	low	65	0.215	GCA_007667125.1_01688
GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	genomad	CDS	10509	12074	GCA_007667125.1	VDQM01000058.1	GCA_007667125.1|VDQM01000058.1	GCA_007667125.1_VDQM01000058.1	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034_13	1566	1	0.462	11	None	GENOMAD.112250.VV	2.337e-41	164	0	0	0	2773	Inoviridae	NA	NA	PF05616	Neisseria meningitidis TspB protein	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	GCA_007667125.1|VDQM01000058.1	13	9	3666	5231	MGNGVNAKVDDGFNKLINRTYTPHFEKYVSNQSSSAEIIHSSTGLRSASTVPVTVQRTVPKSTVFRNLLARARVGGKYVAQRAAGKLGAGLLGGPAGWAITAALTAYDLASPIAASEGYYYDDKYQDFVKTKTFVYCVAISGLCTDQKEEETVMNPRAVYADMETNPSDAEINKKLCSQLDVKHFNFEYPDRFSKKNTKFNRKSNVCVVEFNVLKDVGFLQAGKTILDETRPMERVPKVKEPIPQSVFDKAVQPSADASPSKYVGATANQDGSVPGESMGNPTVSNGTVVTLGPATGPDGKPVQVTITFNTPSGGSTSADVKVTPRPDLTPGSPAAPNYTPAPVPSPTPNPTPGGQPSPNPDGKPGSQPDPTPDGSPSDKTKPDPDGSPGSKDKPDQNSTPDGKDDPKPDDKPKEDDKPKESGGLLCEVFPNILACAEKGDIEEQEEPFKIPHTQNETTFSPDFFLPDNGVCPAPRTATYLGITMEFKYDLICRFAEMIRFLVIGIAAVVAAFIMFSSRKD	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad_CDS_0009	cloud	direct	high	1566	1.0	GCA_007667125.1_01688
GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	genomad	CDS	12078	12371	GCA_007667125.1	VDQM01000058.1	GCA_007667125.1|VDQM01000058.1	GCA_007667125.1_VDQM01000058.1	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034_14	294	1	0.422	11	AGGA	GENOMAD.118066.VV	2.14e-18	81	0	0	0	2773	Inoviridae	NA	NA	PF10734	NA	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	GCA_007667125.1|VDQM01000058.1	14	10	5235	5528	MQAAFFAILQRLLTYIVVKVFIALGISFVTFTGFTVGLGFVKDYISNQFNSMPSDILQIIMMAGFGHALGLIFGAFAFNVAMQSISKLSFIPGGGNK	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad_CDS_0010	cloud	direct	high	294	1.0	GCA_007667125.1_01689
GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	genomad	CDS	12368	13528	GCA_007667125.1	VDQM01000058.1	GCA_007667125.1|VDQM01000058.1	GCA_007667125.1_VDQM01000058.1	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034_15	1161	1	0.489	11	GGAGG	GENOMAD.228060.VP	9.264e-05	47	0	0	1	2773	Inoviridae	NA	NA	PF05707;COG4128;K10954	Zonular occludens toxin (Zot)	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	GCA_007667125.1|VDQM01000058.1	15	11	5525	6685	MIILQTGVPGSGKTSSVVNMLMTDESYTHFTDKDGVKKKRPLFVNGIPELKIEHEELSDEQIKSQPFQDFLPYGSLVIIDEAQRLMGTRSAASKVPPFIEALATHRHHGLDIVLITQHPSFLDSFVRRLVQRHMHVSIKPVGRKLYEWNECVDQPDSSVNIAKAIERTFVVPKKSFGMYKSAEVHTKPKRRIPKSLIFVVLFIPLLIGFTLYTINNMSKRFGADEQQKTSTTSASDVDGAEPKTSPATADIGQNLKPEDFVPTLAEKPESKPIYNNVRQVKTFEYPVGCVDGGKSGCTCYSAQGTPLKEITKAMCKDYARNGLPFNPYKDEQQAVQQPQAAQQTAYEPENNQVITMGGQSPKNLMYDGYVEAGQQFAQRGGVVGER	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad_CDS_0011	cloud	direct	high	1161	1.0	GCA_007667125.1_01690
GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	genomad	CDS	14419	15375	GCA_007667125.1	VDQM01000058.1	GCA_007667125.1|VDQM01000058.1	GCA_007667125.1_VDQM01000058.1	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034_16	957	1	0.537	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	GCA_007667125.1|VDQM01000058.1	16	12	7576	8532	MRNAAGLDISKDTIDAAVVIDDSVQTKKYSNDETGIQQLETWLQTFEDLPVCMEATGNYYEAVADYLAERHTVYVVNPLKISKYAESRFARTKTDKQDAKLIAEYCQTAKEKDLVHRPRPTDDQYRLSRLIAAYAQINQECTAMKNRCEAAKDSEVRAIFKNIIKHLQKQLKTLKTQIQKQTQKPQYQTRIKRLETIPAIGRLTAAVLLQYLTSADFKTPNKFAAFAGLNPQQKQSGTSVKGKEKITRYGNRKLRTALFMPAMVAYRMKAFPAFIARLEAKNKPKKVIITALMRKLAVIAYHVHKKGEDYDPTRYAAA	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad_CDS_0012	cloud	direct	high	957	1.0	GCA_007667125.1_01692
GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	genomad	CDS	15561	16034	GCA_007667125.1	VDQM01000058.1	GCA_007667125.1|VDQM01000058.1	GCA_007667125.1_VDQM01000058.1	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034_17	474	-1	0.485	11	AGGA	GENOMAD.109426.CP	1.577e-73	243	0	0	0	1	NA	NA	NA	COG3030;K07113	Protein affecting phage T7 exclusion by the F plasmid, UPF0716 family	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad	GCA_007667125.1|VDQM01000058.1	17	13	8718	9191	MQFFGIGFLVLIFLEIMSIVWVADWLGGSVALLLMVISFVSGVFMLRNTGLSGILLAGATIRSGGKVSLYQMLWPIRYAVAAVCLMSPGFISTGLALLLLLPFKGRPVVQAEMDGNMFGQRPFSTKAQDDDVIEGEYTVTSEDSDTKHQAYIEHKKD	GCA_007667125.1|VDQM01000058.1|provirus_6844_16034	GCA_007667125.1|VDQM01000058.1@region_6844_16034@tool_genomad_CDS_0013	persistent	direct	high	474	1.0	GCA_007667125.1_01693