core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote	cenote	CDS	1	701	GCA_007991595.1	BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595.1_BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595_1_126	GCA_007991595_1_126	1	702	GCA_007991595_1_126_1	GCA_007991595_1_126_1	-	5386	.	PFAM:PF05840.12	Rep-protein	MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFHKQMDNRIKLLEEILSFRMQGVEFDNGDMYVDGHKAASDVRDEFVSVTEKLMDELAQCYNVLPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRDEYNYPKKKGIKDECSRLLEASTMKSRRGFAIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRDYFRDIGRMVLAA	rep_hall_hmm	common_virus	NaN	.	0	5386	GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote	cenote	CDS	765	1751	GCA_007991595.1	BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595.1_BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595_1_126	GCA_007991595_1_126	766	1752	GCA_007991595_1_126_2	GCA_007991595_1_126_2	-	5386	.	CDD:pfam04687	pilot-protein	MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTVGMGDAGIKSAIQGSNVPNPDEAVPSFVSGAMAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRDYLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASGVVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK*	hallmark_hmm	common_virus	NaN	.	0	5386	GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote_CDS_0002	cloud	direct	high	986	0.999	GCA_007991595.1_01969
GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote	cenote	CDS	1760	2287	GCA_007991595.1	BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595.1_BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595_1_126	GCA_007991595_1_126	1761	2288	GCA_007991595_1_126_3	GCA_007991595_1_126_3	-	5386	.	PDB:1GFF_2	Major-Capsid-Protein	MFQTFISRHNSNFFSDKLVLTSVTPASSAPVLQTPKATSSTLYFDSLTVNAGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVPTTLPTAYDVYPLDGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNFTATKCRGLVSLNQVIKEIICLQPLK*	hallmark_hmm	common_virus	NaN	.	0	5386	GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote_CDS_0003	cloud	direct	high	527	0.998	GCA_007991595.1_01970
GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote	cenote	CDS	2398	3681	GCA_007991595.1	BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595.1_BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595_1_126	GCA_007991595_1_126	2399	3682	GCA_007991595_1_126_4	GCA_007991595_1_126_4	-	5386	.	PDB:1M06_F	Major-Capsid-Protein	MSNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRDSIMTS*	hallmark_hmm	common_virus	NaN	.	0	5386	GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote_CDS_0004	cloud	direct	high	1283	0.999	GCA_007991595.1_01971
GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote	cenote	CDS	3718	3834	GCA_007991595.1	BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595.1_BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595_1_126	GCA_007991595_1_126	3719	3835	GCA_007991595_1_126_5	GCA_007991595_1_126_5	-	5386	.	CDD:PHA00008	DNA-packaging-protein	MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF*	hallmark_hmm	common_virus	NaN	.	0	5386	GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote_CDS_0005	cloud	direct	high	116	0.991	GCA_007991595.1_01972
GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote	cenote	CDS	3834	4292	GCA_007991595.1	BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595.1_BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595_1_126	GCA_007991595_1_126	3835	4293	GCA_007991595_1_126_6	GCA_007991595_1_126_6	-	5386	.	PDB:1CD3_4	Scaffold-protein	MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM*	hallmark_hmm	common_virus	NaN	.	0	5386	GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote_CDS_0006	cloud	direct	high	458	0.998	GCA_007991595.1_01973
GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote	cenote	CDS	4289	4549	GCA_007991595.1	BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595.1_BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595_1_126	GCA_007991595_1_126	4290	4550	GCA_007991595_1_126_7	GCA_007991595_1_126_7	-	5386	.	PFAM:PF12025.7	protein-C	MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFRYESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS*	common_virus_hmm	common_virus	NaN	.	0	5386	GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote_CDS_0007	cloud	ambiguous	low	88	0.337	GCA_007991595.1_01974
GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote	cenote	CDS	4546	5385	GCA_007991595.1	BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595.1_BJYQ01000127.1	GCA_007991595.1|BJYQ01000127.1	GCA_007991595_1_126	GCA_007991595_1_126	4547	5386	GCA_007991595_1_126_8	GCA_007991595_1_126_8	-	5386	.	PFAM:PF05840.12	Rep-protein	EGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRTLPTGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTNLSTECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVTTNLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK*	rep_hall_hmm	common_virus	NaN	.	0	5386	GCA_007991595.1|BJYQ01000127.1@region_1_5386@tool_cenote_CDS_0008	cloud	ambiguous	low	363	0.432	GCA_007991595.1_01975
GCA_007991595.1|BJYQ01000146.1@region_1_3564@tool_cenote	cenote	CDS	193	552	GCA_007991595.1	BJYQ01000146.1	GCA_007991595.1|BJYQ01000146.1	GCA_007991595.1_BJYQ01000146.1	GCA_007991595.1|BJYQ01000146.1	GCA_007991595_1_145	GCA_007991595_1_145	194	553	GCA_007991595_1_145_1	GCA_007991595_1_145_1	+	3564	.	COG0594	RNase P protein component [Translation, ribosomal structure and biogenesis]. 	MRKNYRVKSEKDFKAIFKAGQNFANRKFVVYKLEKDQRHFRVGISVSKKLGNAVVRNSIKRKIRHVLIQHRADLTKDDFVVIARKGVETLDYHQVEQNLLHVLKIARIYQEGFICEKEE*	mmseqs_cdd	nonviral_gene	NaN	.	0	3564	GCA_007991595.1|BJYQ01000146.1@region_1_3564@tool_cenote_CDS_0001	persistent	direct	high	359	0.997	GCA_007991595.1_02053
GCA_007991595.1|BJYQ01000146.1@region_1_3564@tool_cenote	cenote	CDS	536	1351	GCA_007991595.1	BJYQ01000146.1	GCA_007991595.1|BJYQ01000146.1	GCA_007991595.1_BJYQ01000146.1	GCA_007991595.1|BJYQ01000146.1	GCA_007991595_1_145	GCA_007991595_1_145	537	1352	GCA_007991595_1_145_2	GCA_007991595_1_145_2	+	3564	.	PRK02944	YidC family membrane integrase SpoIIIJ. 	MKKKSKIGFLLVASLLILTACGTSEVTANSSDFWEKLVYFFAEMIQFLSFNGSTGIGIILFTLIIRTVLLPVFQFQTTSSRKMQEVQPQIKKLQEKYPGKDMDSKTALAEETSKLYKEMGVNPYAAFLPLFIQMPVLLALFQALTRVEFLKTGHFLWLNLGATDPTFILPILAALFTFFSTWLSNKALPEKNGGTAVMTYLMPVLIFFFAVYAASGVALYWTVSNAYQVGQTLLLSNPFKIIAEREAKAKAERQLEMKKKRALQKAQKKKK*	mmseqs_cdd	nonviral_gene	NaN	.	0	3564	GCA_007991595.1|BJYQ01000146.1@region_1_3564@tool_cenote_CDS_0002	persistent	direct	moderate	782	0.958	GCA_007991595.1_02054
GCA_007991595.1|BJYQ01000146.1@region_1_3564@tool_cenote	cenote	CDS	1370	2392	GCA_007991595.1	BJYQ01000146.1	GCA_007991595.1|BJYQ01000146.1	GCA_007991595.1_BJYQ01000146.1	GCA_007991595.1|BJYQ01000146.1	GCA_007991595_1_145	GCA_007991595_1_145	1371	2393	GCA_007991595_1_145_3	GCA_007991595_1_145_3	+	3564	.	Uniprot:C8XEQ8_NAKMY	tail-tape-measure-protein-	MVIFTGASVEEAIQNGLKTLDIPRMRAHITVVSREKKGFLGLFGKKPAQVDVEPIAEATVTKANQQAIKGVPEEINAQNEPVQSVSEATVDLGRVVAAIKKVENEGEAISEEVKAEILKNDKHATTILEETGTIDVLKADQASDEAVDTEETDEISSLEETGPSQEEASADVAESSFFDLGIQVEDNCDIEEVVASVTAYVQKIVDEMDVEATLSSSHNRRTINMQIDTNEPGRVIGYHGKVLKALQLLAQNYLYNQYSKSFYISINVNDYVEHRAEVLQSYAQKLAQRALEDRRSQHTDPMSNSERKIIHRIISRIDGVTSYSEGDEPNRYVVVDVDSE*	hallmark_hmm	common_virus	NaN	.	0	3564	GCA_007991595.1|BJYQ01000146.1@region_1_3564@tool_cenote_CDS_0003	persistent	direct	high	1022	0.999	GCA_007991595.1_02055
GCA_007991595.1|BJYQ01000146.1@region_1_3564@tool_cenote	cenote	CDS	2443	3075	GCA_007991595.1	BJYQ01000146.1	GCA_007991595.1|BJYQ01000146.1	GCA_007991595.1_BJYQ01000146.1	GCA_007991595.1|BJYQ01000146.1	GCA_007991595_1_145	GCA_007991595_1_145	2444	3076	GCA_007991595_1_145_4	GCA_007991595_1_145_4	+	3564	.	.	hypothetical protein	MSLFPAIESFLAVQGSKYIAPDKAGDLREIMLDWKARGQAARQEFADLVRDFQALYPKLSLERTSNWMNQGQILRPHFWNYLRGYGDITEPMFALRLYGTAEDFGISLEVSFMERKKDEHSLSKQNRVLNLPIQPPAYYFAQIDGVSQRFDATEENRQHLSQQVATGLVRKVLVKYDVNLSEATSKQQVLSELEQAMTALIPFYEATRFE*	.	hypothetical_protein	NaN	.	0	3564	GCA_007991595.1|BJYQ01000146.1@region_1_3564@tool_cenote_CDS_0004	persistent	direct	high	632	0.998	GCA_007991595.1_02056
GCA_007991595.1|BJYQ01000146.1@region_1_3564@tool_cenote	cenote	CDS	3215	3349	GCA_007991595.1	BJYQ01000146.1	GCA_007991595.1|BJYQ01000146.1	GCA_007991595.1_BJYQ01000146.1	GCA_007991595.1|BJYQ01000146.1	GCA_007991595_1_145	GCA_007991595_1_145	3216	3350	GCA_007991595_1_145_5	GCA_007991595_1_145_5	+	3564	.	COG0230	Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]. 	MKRTYQPSKLRRARKHGFRNRMSTKNGRRVLAARRRKGRKVLAA*	mmseqs_cdd	nonviral_gene	NaN	.	0	3564	GCA_007991595.1|BJYQ01000146.1@region_1_3564@tool_cenote_CDS_0005	persistent	direct	high	134	0.993	GCA_007991595.1_02057