core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote	cenote	CDS	1	363	GCA_008084115.1	VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115.1_VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115_1_21	GCA_008084115_1_21@C0	2	364	GCA_008084115_1_21_1	GCA_008084115_1_21_1	-	182322	.	PFAM:PF00145.16	DNA-methyltransferase	MKNNLSSYKQAPLPFIGQKQQFLTHYTTILNQHIQDEGKGWTIIDAFGGSGLLSHTAKQLKPAARVIYNDFDDYVMRLKHIDDINRLRGKIYTLLDGVPRQKRITDHLLKTKIIKVIETFD	phrogs_hmm	hypothetical_protein	C0	4669	0	4669	GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote	cenote	CDS	538	3318	GCA_008084115.1	VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115.1_VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115_1_21	GCA_008084115_1_21@C0	539	3319	GCA_008084115_1_21_2	GCA_008084115_1_21_2	-	182322	.	PFAM:PF13550.5	Putative-phage-tail-protein	MGGKKGKSVTVGYRYYWDIQSGLGRGPVDEIVELRVDDKTAYVGKPGELTHSQAIYVDKPNLFGGDNTGGEGGIQGRMEILMGEPDQKPTQMLINLLKGVYNPSAANNQTGRGRKRFKKDGQHNKFFRPGNVSPGNVATDETIPGFRGIVTTVFSGLISCYNAYPKKHSYRVRRAHKGWHNGVVWYAEKAKILLRNDNLKIKGLTAEQEQNVRQIHAMNPAHILVECATNKSWGGKKDLSELDLDSYKKAADTLFDEGFGLCIRYNRQTSIKDFIKQIVDHIGAAQYDNVETGKQAIKLIRQDYNVADLPLFSYDKGIVAVLDDDSAATDKQANQVIVKYREPVTNREDQAIANNIAAVQMHGVISKTVEYKGVPTFDLAARLAQRDLEMIASGLTRLKITFDMRDSELRPGDVIRVNLPDRDIVDVVFRVGELKNGNEGEIVATCLQDVYGMPAANYSTQKGESLYVPPDYTAKPIDSARLFEVPYHVLPLVLSDAERAFIKPTDCFVWSLGAQPTALSVGYDLIVDAGAGFEHATEGSFTPSVVLDEDIAPYQTQVRFVTDGDYSGLSGAEALMIDDEIVKIDSVNFTKSILTIGRGCADTIPQSHKRGARAWCYLIAAGTNETKYTVNEKIKAKLLTRTQQETLSEDKAQELVIVTRKRQARPYPPGKVQADGIYSDTIADGSKFKLTWAHRDRDIQADKLIAHTEDSTILGDGVSYQIALLDGSNIVRTITTTDTEFLYPDEAKKEGEQFNRITLSAVKNGLSSLFNYQFNVAGAMQLLYDWDYKAKFTQGDNYLNRYDDGYFGGLPYFMLSSSLSPTSELYRDFAVTPGEFGRFALNYKILSYSQRRGKCKVIVQLLNSDNLVKSIDSGLLGDYPTDDWHPQQVTDILPPQVTSIRFKIVVQDSIANNALAFRDITIRVGK*	hallmark_hmm	common_virus	C0	4669	0	4669	GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote_CDS_0002	shell	direct	high	2780	1.0	GCA_008084115.1_01248
GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote	cenote	CDS	3318	3524	GCA_008084115.1	VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115.1_VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115_1_21	GCA_008084115_1_21@C0	3319	3525	GCA_008084115_1_21_3	GCA_008084115_1_21_3	-	182322	.	.	hypothetical protein	MDSIIITMQDMRRVDFCPYGVEAFFMREGLDYADFLQHGIDSRVLLNTGSVFARKCVAAALEAHEGDK*	.	hypothetical_protein	C0	4669	0	4669	GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote_CDS_0003	shell	direct	high	206	0.995	GCA_008084115.1_01249
GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote	cenote	CDS	3528	3773	GCA_008084115.1	VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115.1_VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115_1_21	GCA_008084115_1_21@C0	3529	3774	GCA_008084115_1_21_4	GCA_008084115_1_21_4	-	182322	.	.	hypothetical protein	MFASIAWAIVKIVAYAVASYYINRAFGKRGSNGPEAASAKDFNFPQIDEGTPQCVFFGDCWTEDWQVLAYGNYRTSEIKKG*	.	hypothetical_protein	C0	4669	0	4669	GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote_CDS_0004	shell	direct	high	245	0.996	GCA_008084115.1_01250
GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote	cenote	CDS	3786	4118	GCA_008084115.1	VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115.1_VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115_1_21	GCA_008084115_1_21@C0	3787	4119	GCA_008084115_1_21_5	GCA_008084115_1_21_5	-	182322	.	PFAM:PF05100.11	Minor-tail-protein	MVAGLTISAMDGASITVNLPANLPQGWFNAGFIEWQDDGVREVRAVTVHQNNKLTLMGGTQKLSIGTVIKVYPGCDGRAQTCLKKFNNMLNFGGIPHMPTKSPYDGSRVF*	hallmark_hmm	common_virus	C0	4669	0	4669	GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote_CDS_0005	shell	direct	high	332	0.997	GCA_008084115.1_01251
GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote	cenote	CDS	4252	4434	GCA_008084115.1	VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115.1_VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115_1_21	GCA_008084115_1_21@C0	4253	4435	GCA_008084115_1_21_6	GCA_008084115_1_21_6	-	182322	.	COG3111	Predicted periplasmic protein YdeI with OB-fold, BOF family [Function unknown]. 	MGKDDFIFKDASGEIQVEIERKAWRGQDVSPSDEVKLYGEVDKSWNKTEVDIERVEKIVK*	mmseqs_cdd	nonviral_gene	C0	4669	0	4669	GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote_CDS_0006	persistent	direct	high	182	0.995	GCA_008084115.1_01252
GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote	cenote	CDS	4435	4668	GCA_008084115.1	VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115.1_VSEN01000003.1	GCA_008084115.1|VSEN01000003.1	GCA_008084115_1_21	GCA_008084115_1_21@C0	4436	4669	GCA_008084115_1_21_7	GCA_008084115_1_21_7	-	182322	.	COG3111	Predicted periplasmic protein YdeI with OB-fold, BOF family [Function unknown]. 	MKKRSLATILVLSTIAATGVFAQGGFQDPNAPKMEHHKKGDFKRGGFVNTDQTVSKASEAGSWQDDQYIILQGNIVK*	mmseqs_cdd	nonviral_gene	C0	4669	0	4669	GCA_008084115.1|VSEN01000003.1@region_1_4669@tool_cenote_CDS_0007	persistent	direct	high	233	0.996	GCA_008084115.1_01253
GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote	cenote	CDS	30225	30713	GCA_008084115.1	VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115.1_VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115_1_5	GCA_008084115_1_5@C2	1	489	GCA_008084115_1_5_32	GCA_008084115_1_5_32	+	67690	.	PRK10838	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase. 	MRISFKSLLICCSVLALAACSGGPSKSSRINYKGQINDPIIAIALLSEQQYEWAGTPYRIGGQSRSGVDCSGFVQTTFFDRFGIKLPRQTKDQANYGQYIEKGDIQTGDLVFFKTGRGPHGYHVGIYVKEDKFLHASTKGGVIYSSLNSDYWRKAYWQARRI*	mmseqs_cdd	nonviral_gene	C2	6335	30225	36560	GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote_CDS_0001	persistent	direct	high	488	0.998	GCA_008084115.1_00703
GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote	cenote	CDS	30808	31773	GCA_008084115.1	VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115.1_VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115_1_5	GCA_008084115_1_5@C2	584	1549	GCA_008084115_1_5_33	GCA_008084115_1_5_33	-	67690	.	PRK10696	tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	MPPFTQSDTDNPMTITQTEKKKSYNFNKLQKRLRRNVGNAIADFNMIEEGDKVMVCLSGGKDSYTLLDILLNLQQNAPIKFRIVAVNLDQKQPGFPEHILPGYLQGIGVGYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDMLATLFLNMFYGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKAFPIIPCNLCGSQPNLQRQVVKEMLNTWDRQYPGRLETMFSAMQNITLSHLCDPKLFDFKGIKHGQLIEGVEGDTAFDEENITPMQFDDEDQADFSEHEMIAFKEVR*	mmseqs_cdd	nonviral_gene	C2	6335	30225	36560	GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote_CDS_0002	persistent	direct	high	965	0.999	GCA_008084115.1_00704
GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote	cenote	CDS	31914	32330	GCA_008084115.1	VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115.1_VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115_1_5	GCA_008084115_1_5@C2	1690	2106	GCA_008084115_1_5_34	GCA_008084115_1_5_34	+	67690	.	PFAM:PF04173.12	quinone-oxidoreductase-TQO	MSIVKKFNQLVDLPELAKLILRVGFSVLFLLHGVHKLKTGVDFVAMKFMEFGLPASFAYLAYLAEVVAPVLMILGVYTRIAAFIAASGSVVIMILMYSADLFTLTKVGSWTAEGIATFLFAFVAVMLLGSGKYALKAD*	phrogs_hmm	hypothetical_protein	C2	6335	30225	36560	GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote_CDS_0003	persistent	direct	high	416	0.998	GCA_008084115.1_00705
GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote	cenote	CDS	32420	33544	GCA_008084115.1	VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115.1_VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115_1_5	GCA_008084115_1_5@C2	2196	3320	GCA_008084115_1_5_35	GCA_008084115_1_5_35	-	67690	.	PFAM:PF13550.5	Putative-phage-tail-protein	MSPYQTSIKFKLEGEYSDLASAEALIVDDEIIKIDSVDFKTGTMTVGRGCADTIPQTHKAGALAWCYLLAAGTDETKYTVGEQIKAKLLTRTAQQTLDESKAQVLALTTRQRQARPYPPGKVQIDGGYGNTINDKSAFKLTWAHRDRDVQADKLIPHTDDSTVLGKGVSYKVDLLDGDSVVRSINTTATEFVYTRTFGNWLRLDGALFYSEVRDAIELVAHPTISNKEQNQNYGKEVFKGVELAAAIFATDNLTLGANYTYTRAKNKTYTNFIVRDIPQHKFFAYVDWKIVPNLSLYVSQEAEHGRYSRDGFGSRAPTVRLSGFGNTNAKLTYNVTEQFIVEAGVFNLFDKNYYYEAGYPEAGRVYFSNLKYRF*	hallmark_hmm	common_virus	C2	6335	30225	36560	GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote_CDS_0004	cloud	direct	high	1124	0.999	GCA_008084115.1_00706
GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote	cenote	CDS	33525	34007	GCA_008084115.1	VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115.1_VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115_1_5	GCA_008084115_1_5@C2	3301	3783	GCA_008084115_1_5_36	GCA_008084115_1_5_36	-	67690	.	PFAM:PF13550.5	Putative-phage-tail-protein	MIRHDYKVEDLPLFTYDNGILSVLDDDSAATDKQANQIIVKYREPVTNRDDQAIANNIAAVQMHGVISKTVEYKGIPTFDLAARVAQRDLEMIASGLTRLKITFDMRGSELRPGDVIRVNLPERDIVDVVFRVGELIRTNRDGLIYPVCRVGRRGESLSD*	hallmark_hmm	common_virus	C2	6335	30225	36560	GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote_CDS_0005	cloud	ambiguous	low	108	0.224	GCA_008084115.1_00706
GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote	cenote	CDS	34004	34630	GCA_008084115.1	VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115.1_VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115_1_5	GCA_008084115_1_5@C2	3780	4406	GCA_008084115_1_5_37	GCA_008084115_1_5_37	-	67690	.	pfam02316	Mu DNA-binding domain. This family consists of MuA-transposase and repressor protein CI. These proteins contain homologous DNA-binding domains at their N-termini which compete for the same DNA site within the Mu bacteriophage genome.	MSVNNLKTHYSAKELVGLSLATLPNSVQGILYQAKKNCWATQKRVGKGGGVEYAVKSMPEDVQAEIVVKLGKSAVKNLPVLAEESAPVDAQLLWATYEQGTAKQQQKAQMKLGIMFAVAELVNGGVKILDALALVCHKHNQDGLQPGEKPVTVSALKSWWYQVKDADRSLWLSVTTVRRQSKSLSSKLLTISARRNMTILRPANRRLN*	mmseqs_cdd	common_virus	C2	6335	30225	36560	GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote_CDS_0006	shell	direct	high	626	0.998	GCA_008084115.1_00707
GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote	cenote	CDS	34645	34896	GCA_008084115.1	VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115.1_VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115_1_5	GCA_008084115_1_5@C2	4421	4672	GCA_008084115_1_5_38	GCA_008084115_1_5_38	-	67690	.	COG3423	Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription]. 	METKKTAIDWHREDIKAALAKKGWSLRQLSLKHGYSNGSTLKNALDRPWLKGERIIAEAIGVPAEVIWASRYEQRNLKKYADR*	mmseqs_cdd	nonviral_gene	C2	6335	30225	36560	GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote_CDS_0007	shell	direct	high	251	0.996	GCA_008084115.1_00708
GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote	cenote	CDS	35107	35805	GCA_008084115.1	VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115.1_VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115_1_5	GCA_008084115_1_5@C2	4883	5581	GCA_008084115_1_5_39	GCA_008084115_1_5_39	+	67690	.	PDB:2FJR_A	Repressor-protein-CI	MRVKFKNNSSIGSRIRELREQKKISRNAMAENLGLSLSALQNWETSQTEPIASMIITLAEELGVEPSYLLTGEKNGDIGSPPIKRAQTHEISGVSMIDCFCSVSVSAGFGSFNEGVTAPDGQVPYSDSLLQKLGIKPTHAAVFWADGTSMRPTIDDGDQMLVDLSKKEIKGDKIYLVQNRESVWVKRVKLNWNGIELISDNKEEYAPITLTKEEVDNLEIIGQVAYIGKSVI*	common_virus_hmm	common_virus	C2	6335	30225	36560	GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote_CDS_0008	shell	direct	high	698	0.999	GCA_008084115.1_00709
GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote	cenote	CDS	36017	36559	GCA_008084115.1	VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115.1_VSEN01000013.1	GCA_008084115.1|VSEN01000013.1	GCA_008084115_1_5	GCA_008084115_1_5@C2	5793	6335	GCA_008084115_1_5_40	GCA_008084115_1_5_40	-	67690	.	.	hypothetical protein	MNFTKTLYIFKYTGELFAIFIYNEDAMFLNIHRYIFLTFCWGNIMKFEVIYKFLLLCVLIISLLCVVISGAGLFYGWQLSMLFNIHVSFAVLLVAALLLHILNRKNKLAKINTQFADLVLHNKYPSYCNLDRLIMTFEHFSVVQIAEQLNLDLDALLKELAEGKINVKNSHCTQPLNIRN*	.	hypothetical_protein	C2	6335	30225	36560	GCA_008084115.1|VSEN01000013.1@region_30226_36560@tool_cenote_CDS_0009	persistent	direct	high	542	0.998	GCA_008084115.1_00710