core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote	cenote	CDS	177649	177882	GCA_008084195.1	VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195.1_VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195_1_20	GCA_008084195_1_20@C7	1	234	GCA_008084195_1_20_166	GCA_008084195_1_20_166	+	182318	.	COG3111	Predicted periplasmic protein YdeI with OB-fold, BOF family [Function unknown]. 	MKKRSLATILVLSTIAATGVFAQGGFQDPNAPKMEHHKKGDFKRGGFVNTDQTVSKASEAGSWQDDQYIILQGNIVK*	mmseqs_cdd	nonviral_gene	C7	4670	177649	182319	GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote_CDS_0001	persistent	direct	high	233	0.996	GCA_008084195.1_01429
GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote	cenote	CDS	177883	178065	GCA_008084195.1	VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195.1_VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195_1_20	GCA_008084195_1_20@C7	235	417	GCA_008084195_1_20_167	GCA_008084195_1_20_167	+	182318	.	COG3111	Predicted periplasmic protein YdeI with OB-fold, BOF family [Function unknown]. 	MGKDDFIFKDASGEIQVEIERKAWRGQDVSPSDEVKLYGEVDKSWNKTEVDIERVEKIVK*	mmseqs_cdd	nonviral_gene	C7	4670	177649	182319	GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote_CDS_0002	persistent	direct	high	182	0.995	GCA_008084195.1_01430
GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote	cenote	CDS	178199	178531	GCA_008084195.1	VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195.1_VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195_1_20	GCA_008084195_1_20@C7	551	883	GCA_008084195_1_20_168	GCA_008084195_1_20_168	+	182318	.	PFAM:PF05100.11	Minor-tail-protein	MVAGLTISAMDGASITVNLPANLPQGWFNAGFIEWQDDGVREVRAVTVHQNNKLTLMGGTQKLSIGTVIKVYPGCDGRAQTCLKKFNNMLNFGGIPHMPTKSPYDGSRVF*	hallmark_hmm	common_virus	C7	4670	177649	182319	GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote_CDS_0003	shell	direct	high	332	0.997	GCA_008084195.1_01431
GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote	cenote	CDS	178544	178789	GCA_008084195.1	VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195.1_VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195_1_20	GCA_008084195_1_20@C7	896	1141	GCA_008084195_1_20_169	GCA_008084195_1_20_169	+	182318	.	.	hypothetical protein	MFASIAWAIVKIVAYAVASYYINRAFGKRGSNGPEAASAKDFNFPQIDEGTPQCVFFGDCWTEDWQVLAYGNYRTSEIKKG*	.	hypothetical_protein	C7	4670	177649	182319	GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote_CDS_0004	shell	direct	high	245	0.996	GCA_008084195.1_01432
GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote	cenote	CDS	178793	178999	GCA_008084195.1	VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195.1_VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195_1_20	GCA_008084195_1_20@C7	1145	1351	GCA_008084195_1_20_170	GCA_008084195_1_20_170	+	182318	.	.	hypothetical protein	MDSIIITMQDMRRVDFCPYGVEAFFMREGLDYADFLQHGIDSRVLLNTGSVFARKCVAAALEAHEGDK*	.	hypothetical_protein	C7	4670	177649	182319	GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote_CDS_0005	shell	direct	high	206	0.995	GCA_008084195.1_01433
GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote	cenote	CDS	178999	181779	GCA_008084195.1	VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195.1_VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195_1_20	GCA_008084195_1_20@C7	1351	4131	GCA_008084195_1_20_171	GCA_008084195_1_20_171	+	182318	.	PFAM:PF13550.5	Putative-phage-tail-protein	MGGKKGKSVTVGYRYYWDIQSGLGRGPVDEIVELRVDDKTAYVGKPGELTHSQAIYVDKPNLFGGDNTGGEGGIQGRMEILMGEPDQKPTQMLINLLKGVYNPSAANNQTGRGRKRFKKDGQHNKFFRPGNVSPGNVATDETIPGFRGIVTTVFSGLISCYNAYPKKHSYRVRRAHKGWHNGVVWYAEKAKILLRNDNLKIKGLTAEQEQNVRQIHAMNPAHILVECATNKSWGGKKDLSELDLDSYKKAADTLFDEGFGLCIRYNRQTSIKDFIKQIVDHIGAAQYDNVETGKQAIKLIRQDYNVADLPLFSYDKGIVAVLDDDSAATDKQANQVIVKYREPVTNREDQAIANNIAAVQMHGVISKTVEYKGVPTFDLAARLAQRDLEMIASGLTRLKITFDMRDSELRPGDVIRVNLPDRDIVDVVFRVGELKNGNEGEIVATCLQDVYGMPAANYSTQKGESLYVPPDYTAKPIDSARLFEVPYHVLPLVLSDAERAFIKPTDCFVWSLGAQPTALSVGYDLIVDAGAGFEHATEGSFTPSVVLDEDIAPYQTQVRFVTDGDYSGLSGAEALMIDDEIVKIDSVNFTKSILTIGRGCADTIPQSHKRGARAWCYLIAAGTNETKYTVNEKIKAKLLTRTQQETLSEDKAQELVIVTRKRQARPYPPGKVQADGIYSDTIADGSKFKLTWAHRDRDIQADKLIAHTEDSTILGDGVSYQIALLDGSNIVRTITTTDTEFLYPDEAKKEGEQFNRITLSAVKNGLSSLFNYQFNVAGAMQLLYDWDYKAKFTQGDNYLNRYDDGYFGGLPYFMLSSSLSPTSELYRDFAVTPGEFGRFALNYKILSYSQRRGKCKVIVQLLNSDNLVKSIDSGLLGDYPTDDWHPQQVTDILPPQVTSIRFKIVVQDSIANNALAFRDITIRVGK*	hallmark_hmm	common_virus	C7	4670	177649	182319	GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote_CDS_0006	shell	direct	high	2780	1.0	GCA_008084195.1_01434
GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote	cenote	CDS	181954	182316	GCA_008084195.1	VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195.1_VSES01000003.1	GCA_008084195.1|VSES01000003.1	GCA_008084195_1_20	GCA_008084195_1_20@C7	4306	4668	GCA_008084195_1_20_172	GCA_008084195_1_20_172	+	182318	.	PFAM:PF00145.16	DNA-methyltransferase	MKNNLSSYKQAPLPFIGQKQQFLTHYTTILNQHIQDEGKGWTIIDAFGGSGLLSHTAKQLKPAARVIYNDFDDYVMRLKHIDDINRLRGKIYTLLDGVPRQKRITDHLLKTKIIKVIETFD	phrogs_hmm	hypothetical_protein	C7	4670	177649	182319	GCA_008084195.1|VSES01000003.1@region_177650_182319@tool_cenote_CDS_0007	.	unmatched_CDS	none	0	0	.
GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote	cenote	CDS	30585	31073	GCA_008084195.1	VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195.1_VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195_1_5	GCA_008084195_1_5@C2	1	489	GCA_008084195_1_5_31	GCA_008084195_1_5_31	+	68049	.	PRK10838	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase. 	MRISFKSLLICCSVLALAACSGGPSKSSRINYKGQINDPIIAIALLSEQQYEWAGTPYRIGGQSRSGVDCSGFVQTTFFDRFGIKLPRQTKDQANYGQYIEKGDIQTGDLVFFKTGRGPHGYHVGIYVKEDKFLHASTKGGVIYSSLNSDYWRKAYWQARRI*	mmseqs_cdd	nonviral_gene	C2	6334	30585	36919	GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote_CDS_0001	persistent	direct	high	488	0.998	GCA_008084195.1_00693
GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote	cenote	CDS	31168	32133	GCA_008084195.1	VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195.1_VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195_1_5	GCA_008084195_1_5@C2	584	1549	GCA_008084195_1_5_32	GCA_008084195_1_5_32	-	68049	.	PRK10696	tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	MPPFTQSDTDNPMTITQTEKKKSYNFNKLQKRLRRNVGNAIADFNMIEEGDKVMVCLSGGKDSYTLLDILLNLQQNAPIKFRIVAVNLDQKQPGFPEHILPGYLQGIGVGYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDMLATLFLNMFYGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKAFPIIPCNLCGSQPNLQRQVVKEMLNTWDRQYPGRLETMFSAMQNITLSHLCDPKLFDFKGIKHGQLIEGVEGDTAFDEENITPMQFDDEDQADFSEHEMIAFKEVR*	mmseqs_cdd	nonviral_gene	C2	6334	30585	36919	GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote_CDS_0002	persistent	direct	high	965	0.999	GCA_008084195.1_00694
GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote	cenote	CDS	32274	32690	GCA_008084195.1	VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195.1_VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195_1_5	GCA_008084195_1_5@C2	1690	2106	GCA_008084195_1_5_33	GCA_008084195_1_5_33	+	68049	.	PFAM:PF04173.12	quinone-oxidoreductase-TQO	MSIVKKFNQLVDLPELAKLILRVGFSVLFLLHGVHKLKTGVDFVAMKFMEFGLPASFAYLAYLAEVVAPVLMILGVYTRIAAFIAASGSVVIMILMYSADLFTLTKVGSWTAEGIATFLFAFVAVMLLGSGKYALKAD*	phrogs_hmm	hypothetical_protein	C2	6334	30585	36919	GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote_CDS_0003	persistent	direct	high	416	0.998	GCA_008084195.1_00695
GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote	cenote	CDS	32780	33904	GCA_008084195.1	VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195.1_VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195_1_5	GCA_008084195_1_5@C2	2196	3320	GCA_008084195_1_5_34	GCA_008084195_1_5_34	-	68049	.	PFAM:PF13550.5	Putative-phage-tail-protein	MSPYQTSIKFKLEGEYSDLASAEALIVDDEIIKIDSVDFKTGTMTVGRGCADTIPQTHKAGALAWCYLLAAGTDETKYTVGEQIKAKLLTRTAQQTLDESKAQVLALTTRQRQARPYPPGKVQIDGGYGNTINDKSAFKLTWAHRDRDVQADKLIPHTDDSTVLGKGVSYKVDLLDGDSVVRSINTTATEFVYTRTFGNWLRLDGALFYSEVRDAIELVAHPTISNKEQNQNYGKEVFKGVELAAAIFATDNLTLGANYTYTRAKNKTYTNFIVRDIPQHKFFAYVDWKIVPNLSLYVSQEAEHGRYSRDGFGSRAPTVRLSGFGNTNAKLTYNVTEQFIVEAGVFNLFDKNYYYEAGYPEAGRVYFSNLKYRF*	hallmark_hmm	common_virus	C2	6334	30585	36919	GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote_CDS_0004	cloud	direct	high	1124	0.999	GCA_008084195.1_00696
GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote	cenote	CDS	33885	34367	GCA_008084195.1	VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195.1_VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195_1_5	GCA_008084195_1_5@C2	3301	3783	GCA_008084195_1_5_35	GCA_008084195_1_5_35	-	68049	.	PFAM:PF13550.5	Putative-phage-tail-protein	MIRHDYKVEDLPLFTYDNGILSVLDDDSAATDKQANQIIVKYREPVTNRDDQAIANNIAAVQMHGVISKTVEYKGIPTFDLAARVAQRDLEMIASGLTRLKITFDMRGSELRPGDVIRVNLPERDIVDVVFRVGELIRTNRDGLIYPVCRVGRRGESLSD*	hallmark_hmm	common_virus	C2	6334	30585	36919	GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote_CDS_0005	cloud	ambiguous	low	108	0.224	GCA_008084195.1_00696
GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote	cenote	CDS	34364	34990	GCA_008084195.1	VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195.1_VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195_1_5	GCA_008084195_1_5@C2	3780	4406	GCA_008084195_1_5_36	GCA_008084195_1_5_36	-	68049	.	pfam02316	Mu DNA-binding domain. This family consists of MuA-transposase and repressor protein CI. These proteins contain homologous DNA-binding domains at their N-termini which compete for the same DNA site within the Mu bacteriophage genome.	MSVNNLKTHYSAKELVGLSLATLPNSVQGILYQAKKNCWATQKRVGKGGGVEYAVKSMPEDVQAEIVVKLGKSAVKNLPVLAEESAPVDAQLLWATYEQGTAKQQQKAQMKLGIMFAVAELVNGGVKILDALALVCHKHNQDGLQPGEKPVTVSALKSWWYQVKDADRSLWLSVTTVRRQSKSLSSKLLTISARRNMTILRPANRRLN*	mmseqs_cdd	common_virus	C2	6334	30585	36919	GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote_CDS_0006	shell	direct	high	626	0.998	GCA_008084195.1_00697
GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote	cenote	CDS	35005	35256	GCA_008084195.1	VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195.1_VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195_1_5	GCA_008084195_1_5@C2	4421	4672	GCA_008084195_1_5_37	GCA_008084195_1_5_37	-	68049	.	COG3423	Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription]. 	METKKTAIDWHREDIKAALAKKGWSLRQLSLKHGYSNGSTLKNALDRPWLKGERIIAEAIGVPAEVIWASRYEQRNLKKYADR*	mmseqs_cdd	nonviral_gene	C2	6334	30585	36919	GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote_CDS_0007	shell	direct	high	251	0.996	GCA_008084195.1_00698
GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote	cenote	CDS	35466	36164	GCA_008084195.1	VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195.1_VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195_1_5	GCA_008084195_1_5@C2	4882	5580	GCA_008084195_1_5_38	GCA_008084195_1_5_38	+	68049	.	PDB:2FJR_A	Repressor-protein-CI	MRVKFKNNSSIGSRIRELREQKKISRNAMAENLGLSLSALQNWETSQTEPIASMIITLAEELGVEPSYLLTGEKNGDIGSPPIKRAQTHEISGVSMIDCFCSVNVSAGFGSFNEGVTAPDGQVPYSDSLLQKLGIKPTHAAVFWADGTSMRPTIDDGDQMLVDLSKKEIKGDKIYLVQNRESVWVKRVKLNWNGIELISDNKEEYAPITLTKEEVDNLEIIGQVAYIGKSVI*	common_virus_hmm	common_virus	C2	6334	30585	36919	GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote_CDS_0008	shell	direct	high	698	0.999	GCA_008084195.1_00699
GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote	cenote	CDS	36376	36918	GCA_008084195.1	VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195.1_VSES01000013.1	GCA_008084195.1|VSES01000013.1	GCA_008084195_1_5	GCA_008084195_1_5@C2	5792	6334	GCA_008084195_1_5_39	GCA_008084195_1_5_39	-	68049	.	.	hypothetical protein	MNFTKTLYIFKYTGELFAIFIYNEDAMFLNIHRYIFLTFCWGNIMKFEVIYKFLLLCVLIISLLCVVISGAGLFYGWQLSMLFNIHVSFAVLLVAALLLHILNRKNKLAKINTQFADLVLHNKYPSYCNLDRLIMTFEHFSVVQIAEQLNLDLDALLKELAEGKINVKNSHCTQPLNIRN*	.	hypothetical_protein	C2	6334	30585	36919	GCA_008084195.1|VSES01000013.1@region_30586_36919@tool_cenote_CDS_0009	persistent	direct	high	542	0.998	GCA_008084195.1_00700