core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2303195	2303935	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	1	741	GCA_009295985_1_1_2029	GCA_009295985_1_1_2029	+	4596548	.	.	hypothetical protein	MDQQNTHIGILAGNSRVYLDNNGMVAIEAQLNAFDAALRLARQSLDSGNLLPKLSVAFDHLGIFRLQFLTENLSNAQKRRPRLSHLHPLIQQVFLPIAEKYQIDLSDIRAIHEDSARQHLVHILATQDIPERLTRRMLTGAASRPNGDTHNETPTQKLTCAAITKEYFERAASDHQDPQAVLEVFFENSPWSRSLAYVRGLQLSHLLGVPAAIRLNLVNEAGEVSRGEKIIAQFTSAPKKPLSSRS*	.	hypothetical_protein	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0001	persistent	direct	high	740	0.999	GCA_009295985.1_02214
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2303952	2305151	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	758	1957	GCA_009295985_1_1_2030	GCA_009295985_1_1_2030	+	4596548	.	COG1104	Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme [Amino acid transport and metabolism]. 	MYSQNPPIYLDNNATTALDPAVLQAMMPYLTHAYGNAASKSHPFGWEASQAVQRARTLIATAINAVSPADIIFTSGATESINLAILGLQYQGNWGHIITSMIEHKSVLDCCAKLADSGVSVTYLQPQRDGIVSLDTLFQAIRPDTRLVSIMTANNETGTLQKVAEIGALCRDKGILFHTDATQAFGKIALDMQRMNISMATFSAHKVYGPMGVGALYVNTADPHLMLSPLIVGGGHERGLRSGTLNVPGIVGFGRAAELAMENMSVESARLCDLRNRLRQHILDTVPNVQVNGHLTECLPGVLNVSFEGIDADSLLLELSDVALSSGSACTSDQQIPSHVLQALGASDEQIRGSVRFGLGRFNNESEIDYVCQRLENTVKTLRSMAPLSSATTTNETGV*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0002	persistent	direct	high	1199	0.999	GCA_009295985.1_02215
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2305155	2306327	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	1961	3133	GCA_009295985_1_1_2031	GCA_009295985_1_1_2031	+	4596548	.	cd17489	Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	MRKTSSLFLLFGTLFSAGGYGATFLISAWFHSQGGNDIDAGATLGMALFGTLIGVPLVGWFAGKLDASRLAALAALIQSCGYFLLGSLSGGSGYLPHVAALLIGLGWGMFYIGGPMALSERLTDTERGPGFTRFSAFQMTGICGSPILLTIAVVQGGIPIQAAFLLVGVMGVFASILLMIFGTREPLIRHENSLRPWVKKITVLAKSGVIRPIVMVCLGGAVFSGMMSFQDSLTDGSLASASTFFAVHATTAVVSRLLLAHKLSSWPRTPLVAVLLCCLMIGLVCLLGIPTHVSFQIAAAMLTGAGYGLLYPVIQTWAVNESAPENRHAALTWFVVAYFVGIFGFPPFGGWVLVTVGKVWFIWVLATLATLELVTAIVKWPQTTHRPLSS*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0003	persistent	direct	high	1172	0.999	GCA_009295985.1_02216
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2306632	2307840	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	3438	4646	GCA_009295985_1_1_2032	GCA_009295985_1_1_2032	+	4596548	.	PFAM:PF00872.17	Transposase,-Mutator-family	MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL*	common_virus_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0004	persistent	direct	high	1208	0.999	GCA_009295985.1_02217
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2308061	2308480	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	4867	5286	GCA_009295985_1_1_2033	GCA_009295985_1_1_2033	-	4596548	.	PFAM:PF02413.16	tail-fibre-assembly-protein	MKKLNKLDSDGFYIEDYIDGYLPKNWTADLVGDGYYKAQYQNADIDPDTGEWTGGVWAETSGPSTIDISAQKAEFVTQAKLKKSKLISDASDRIEILKDRIELGQDRAAELKLWKSYRIALDDIDVSAAPDIEWPLKPE*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0005	shell	direct	high	419	0.998	GCA_009295985.1_02218
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2308491	2309408	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	5297	6214	GCA_009295985_1_1_2034	GCA_009295985_1_1_2034	-	4596548	.	UniProt:tr|A0A0N8LSN6_CITFR	Tail-protein	MAWYRSGTVTSEAAQNIVTGTGTQWANNVMGVAPGMALFIPDSAGNTLIYEILAVDSNTQIRINGNIKESVADSSYAIMTTVSNSYSALARETSAQLAMYQQLLKNWQQITTGTGDVNIIAPDGSVVIIPSLNSLMPKSGGAFTGPVSMFHDATDPLEPVTFQQFKQTGGELATQMTQLASRTTTLEADAFTASRIANTPWIPLTLQNGWLPLQGYHNAIYRKINGVVYMEGVITGGTHADGTVIAILPDGYRPALDQVSVQPISGSTLGGITAQSRIALWTDGALRIYGITGNGDIGIKSSWVI*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0006	shell	direct	high	917	0.999	GCA_009295985.1_02219
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2309425	2310423	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	6231	7229	GCA_009295985_1_1_2035	GCA_009295985_1_1_2035	-	4596548	.	pfam20051	Family of unknown function (DUF6453). This family of uncharacterized proteins is mainly found in phages. It may represent structural phage proteins. There are several conserved motifs: FxxI, GxxxxP and FSxxxxP, and also 7 additional conserved Glycine residues.	MAEPILYISPSDGGKGINMTSGTRLLKFLGYYDTNGTGNPPSAVLNGYTGGALYLVPSDFGGVIQPLGSSAVWAWWVTGYSMSGNRITFTTSESNKGWVRFSAFEIPQSPAVGTYGLLLQDSANFMAITESSELGFCTWRGNVNISGVWSIPAGIQNRDNAIVFANWDNPNVSLYYDSANKTINCYQINSTGSTSSGSVNANICVFTTGFFPEPPSPGTAGLAIFNTSGQCTYSSRYAPLIIGGNMALSNQPNVWVNTGITRPMIPLPSAGGLPAGNINNGNYRGWYKSAMRMSGSSITAGQGAYVNSSNTLDYPYGISPISIPVLNADIYF*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0007	shell	direct	high	998	0.999	GCA_009295985.1_02220
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2310423	2313626	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	7229	10432	GCA_009295985_1_1_2036	GCA_009295985_1_1_2036	-	4596548	.	PFAM:PF13550.5	tail-protein	MARKPIKGRKGGGSNATTPVESPDSIQSTARAKILIALGEGEFAGGLDGTNIYLDGTPIKNSDGTSNFTGVTWEYRPGTQAQDYIQGMPNVENEITVNTELKSDTPWVRSITNTQLSATRVRLGWPSLQRQADNGDVGGYRIEYAVDVATDGGAYQTLLDTAIDGKTTTLYERSHRINLPKATAGWQVRTRRKTANANSGRIADKMNVEAISEVIDAKLRYPNTALLYIEFDATQFQNIPIISCEPKGRIIRVPTTYDPVTRTYSGVWDGSFKWAHTNNPAWVFYNIVLADRFGLGHRIEVSQVDKWELYRIGQYCDQLIPDGRGGSGTEPRFTCDVYIQSQAEAFTVLRDLAAIFRGMTYWGNNQLCTLADMPRDVDYIFTRASVIDGRFTYGGGSEKKRYTTAMVSWSDPANNCQDAIEAVSDNDLVRRYGVNQLDMTAIGCIRQTEANRRGRWALLTNSKDRTVNFNVGLDGAIPLPGHIIGVADDMLSGRKMGGRISSVSGRNITLDRVADVKAGDRLLVNLPNGVAQGRTVQVVNGKVITVTTAYSEVPAAESGWSVDADDLAIQQYRVTGISDNDDNTYSISSVQHDPDKYERIDTGARIDERPISVIPPGVQPPPTNVVIDSFSALSQGLAITTLRVTWEPAASAIAYEAEWRRDNGNWISAPRTSAQGFQVEGIYAGQYQARVRAINPSEISSIWANAQETTLNGKEGNPPMPVGFTATGILFGITLNWGYPEGAEDALKTEIEYSLSADGTDAMLLSDVPHPQRNYTMQGLRAGQVFWFRARIVDKSGNQSPWIDWVRGMSSTDTSAILEAIGDDFINNTVAGQQLINDDFMNAEGILETAKANNASIWQQWAQHGENKAGVIHLTTTVADAERAFAEFETLVTATFEDQTAAIDQKMTAVVDANGASATYSLRAGLNYNGQFVSAGMVIGAEFINGVAKSSIGFTADQFILLSGPTGNLFSPFAVVNGQVFMNDAFIAKASIGRGKITDTLDSDNYVQGISGLKLDFKNGNAEFNNVNLRGNITMDNTINGIRTIVDYRGQRTYHANGQPAIICGYF*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0008	shell	direct	high	3203	1.0	GCA_009295985.1_02221
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2313802	2314023	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	10608	10829	GCA_009295985_1_1_2037	GCA_009295985_1_1_2037	+	4596548	.	.	hypothetical protein	MSKYTISSITELSQLQDLKPPFHTNITVNLRTAAGQTAVSFDPHGMDIMNMTVSEIGEAAYKIFIDRLSANNK*	.	hypothetical_protein	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0009	shell	direct	high	221	0.995	GCA_009295985.1_02222
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2313992	2314156	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	10798	10962	GCA_009295985_1_1_2038	GCA_009295985_1_1_2038	-	4596548	.	.	hypothetical protein	MTQEQRIEALEQQVSDMQQQITSIQEAVICYQDLNQLNFNELRAAICCLQKADQ*	.	hypothetical_protein	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0010	shell	direct	high	164	0.994	GCA_009295985.1_02223
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2314198	2314818	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	11004	11624	GCA_009295985_1_1_2039	GCA_009295985_1_1_2039	-	4596548	.	PFAM:PF06805.11	tail-assembly-protein-I	MTLFAQEVMTPIKLSGSLAKMFGRDHQRLVGSSGEVIKALCVTIPGFEQYLMTAKQRGLTFAVFKNKRNVGKDELELASGGQEIRIVPVIIGSKRGGLFQTILGVALIGMATFMSGGLAVAFGAGGVWGGAMAMMGASMALGGVIQMLSPQQSGLAMRQSPDNKPSYAFGGPVNSTAQGNPVGVLYGKRRIGGAVISAGIYAEDQM*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0011	shell	direct	high	620	0.998	GCA_009295985.1_02224
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2314874	2315224	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	11680	12030	GCA_009295985_1_1_2040	GCA_009295985_1_1_2040	-	4596548	.	.	hypothetical protein	MKQIIISLVVLVLAGCSSISEMRERGPHSEFKSKKEAQVLATCITMEWQKFKVVGGGATDVSMSLLPNGFSVFTPNQTEVADVHNIDNGSTVNFFVQTGLFDWRINQRVDGIKKCI*	.	hypothetical_protein	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0012	shell	direct	high	350	0.997	GCA_009295985.1_02225
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2315232	2315768	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	12038	12574	GCA_009295985_1_1_2041	GCA_009295985_1_1_2041	-	4596548	.	PF11023.8	Zinc-ribbon containing domain	MEIIIAAIFLGLIPAIIANSKGRSFGLWWLYGALLFIVALVHSIVMSSDNKTIEQKQIDNGMRKCPFCAELIKPEAIKCKHCGSDVKPADEVISSNLEYGFNPSDLPFDSFFIRRKVGFDINDHAVMEMVNKLKRINPGMHPMNIQTRYANDFDKLKNKLPSSIRDEFDARYKYWMDK*	hhsuite_tools	hypothetical_protein	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0013	shell	direct	high	536	0.998	GCA_009295985.1_02226
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2315882	2316889	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	12688	13695	GCA_009295985_1_1_2042	GCA_009295985_1_1_2042	-	4596548	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNSLAKSNANNTQTSAISQFHFDTHAVRVLSIHNEPWFVAADLCRVLELSNPTKSIMNLDDDEKALTSIQGLSRGNEEANIVSESGMYTLILRCRDAVKPGTIPHRVRKWVTAEVLPAIRKTGSYDSPRKATKKALPGKITIEQQEAVKQLVMNRGKALPKENQAKAMITMWSALKTHFGCSYKEISEDQFTEALSLAARVTIEGEFLGKQEALPVPKLEVSLPIQWWFDNNPAVKYGNRENITKMKQNHFCFTPSLNVTIDMLCGDSDTSAAIQLINIMEMAGYDVSAPKAEIVAMRKHIANVEYGMKAISDACIRAKNKKVIFRGKKADITIN*	common_virus_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0014	shell	direct	high	1007	0.999	GCA_009295985.1_02227
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2316963	2317130	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	13769	13936	GCA_009295985_1_1_2043	GCA_009295985_1_1_2043	-	4596548	.	PFAM:PF05534.11	Arc-like-repressor	MQKAKDMYQRKIRFPEEICLAIQNNGENQSRQFNTEVIYQLRKVYGLIEKRNDEA*	phrogs_hmm	hypothetical_protein	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0015	shell	direct	high	167	0.994	GCA_009295985.1_02228
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2317254	2317685	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	14060	14491	GCA_009295985_1_1_2044	GCA_009295985_1_1_2044	+	4596548	.	PHA01513	Mnt	MSREDPQLRIRLPVELKEKIEGSAKENNRSMNAEIVQRLDASYLSEFPEDGVLSAKDALQIANNAKESLSNLIFTRTFAEISKKVRIGHKSFCIDLDDLELEVLSDDDFNYVLKRTFSRLTELGYILSEKSLDSGGFMIEIPE*	mmseqs_cdd	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0016	shell	direct	high	432	1.0	GCA_009295985.1_02229
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2317764	2318396	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	14570	15202	GCA_009295985_1_1_2045	GCA_009295985_1_1_2045	-	4596548	.	.	hypothetical protein	MNKYIANEKMPLLIPAAGFDAKLSMTEKNIEHTEAFMASGVKEFSLPGFVTPHGYRLLVSVNGEHYRLVTDAAIPETVYAVKLAFLEHIVPTRKTCTQILVWRTVQPQHDSAVHGLPQEFFRHFLTQYSIVVSDSEQTNEGRRFWERMIAWAIQAEGHYVYVSNGSEEDRPLTFMTNWDDFYGTWADFCWGDDRDCHCHRLFVISTEQLH*	.	hypothetical_protein	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0017	shell	direct	high	632	0.998	GCA_009295985.1_02230
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2318657	2319367	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	15463	16173	GCA_009295985_1_1_2046	GCA_009295985_1_1_2046	-	4596548	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MRDKTLKAILAHAEAEHPKECCGVVAQKSRVEKYFPCENLATNPTEQFHLDPTGYVEAEDWGTITAIVHSHPDATTQPSELDMAQCDNNELPWHIVSWPEGDLRTIQPRGDLPLVGREVVLGHTDCWGLIMSYFRQTHDIELKDYRVDRHWWESGTENFYMDNWYECGFREFSGPAQPGDLIIMQVSAPVANHGGILLEDGMLLHHPYGQLSQRVPYGGYWQERTMKVVRYEISQL*	mmseqs_cdd	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0018	shell	direct	high	710	0.999	GCA_009295985.1_02231
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2319370	2320122	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	16176	16928	GCA_009295985_1_1_2047	GCA_009295985_1_1_2047	-	4596548	.	PFAM:PF05100.11	minor-tail-protein-	MTINTDLQRLEPGNRVRLYEVDGSKFDGPLLRFHADTLPHTPEEIAAANGDESKLPAKSIWWQGEEYSAWPVQVEGIEMSSDGQSAQPKLSVANLDGTITALCLAFDDMVQAKVIVHDTFKHYLDAVNFPEGNSDADPEQEKVQVYYIDSKSTETNEIVEFTLSSPADLQGLLIPTRQIHSLCTWCMRGDYRSGNGCDYAGTLYFDEKGNPTDDPSKDKCSGLLVDCKKRFGADNPLPFGGFPGAALIKR*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0019	shell	direct	high	752	0.999	GCA_009295985.1_02232
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2320296	2320637	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	17102	17443	GCA_009295985_1_1_2048	GCA_009295985_1_1_2048	-	4596548	.	PFAM:PF05939.12	minor-tail-protein	MAIETFLWRTQGVPEGSFNQRVRTAQFGDGYKQVTGDGINPETQSWPLTFQGLEKEMMPILAFVRRHTTKSCQWTAPYGVVGLWRVSVDSIKAVPVGGNVMSVSFTFEQAFAP*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0020	shell	direct	high	341	0.997	GCA_009295985.1_02233
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2320640	2324143	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	17446	20949	GCA_009295985_1_1_2049	GCA_009295985_1_1_2049	-	4596548	.	TIGR01541	phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]	MADIATISLKVNTSEVERGSNELDKFQVAAAGAAKSADGFGDSGKDVSKITAEVAKEVEETHRRVAEYTEALNKNQVNTRAATQATSEQQQQLRTLLTQINPVTAAFEKLDDMEQRLRDFNAKGMIDPESFHAAADAIQRTRDELGRVAEARTEEGAAAASAAAADKKATDAKEAFLTKLRDQSALYKASASDSAAYRAAQLGITTEAAPLIAAIKQQEEATRRDAEQKRLAAISARGLKDAIKQLGAEERAAAQATKAQENADLSAATAKENFIQRLKAQADLQGKTASEIQAYKAAQLGVTEQAAPFIAKLKEQESAWQNGALSAKQYRLALRQLPSQFTNIATSIAGGMPLWMVVTQQGGRITDSFGGLPGIFAAIKKELFGVSESADESSDSLSENANNLAENADNAKKLIGPLGFVKFGIIGVVAALGASSIAYYKAYQEQEKLNKSVIMTGEYSGLTARQLSGMAYEVSKSSGTISQASAVLSQLAGAGLSSAVDFKSATQAIVDFSDASGESIDNLVKQFSQLSDDPAGGSLALTKNMHYLTAAQYENIAALQAQGDKAGAITAATDALSGAMTRRSQEIKESMGTLPKFFDDVADSAKKMWDGIMGLGRETSDAETRAKLVTQIKSAEEYQRRLALQGKVAVMPKNYDEWKKQIAAIDSENIKKVNGAKLDQDAIDAQVGINNLAQKGLTQAEKRVKAEQELNRWIESNKKAAAAGKATLFTAQDIENARSGIDNEYKDRSTPKIKAYQDDIATRELLDSQARVAALKEQSNLIDTMTDQENRLLKFTQKIADLKSKTILTADQKSLLSRSSEIIASIKLEAQLSRENVERKKATEALKKMEEYTASIVAKNKQNQDRFGLTSKQAGRVDQETQLDNTFRKDTKGINDAEQLAKITAEYNKAKAELHAGFEQEDLNEGNWLAGMTQGLEQYGETANNVFSATAQLAQTTMGSMTSMANQMMTTGSANVKQFATNFMSSIVDIINKLLLAQMIQTAMGWIGGAVSGGNDPGAVPMGLYNGGYVPEFAGGGYTGEGGKFEPKGVVHGGEFVFTKEATNRIGIDNLYKMMRGYADGGVVSNAVTATAPMLGMQGGETAISVDLSGMTITTQGNQQQDTGANNGELVSKAARNEVIAIVTQQLDRAMGQSGRITNFVTNRAGR*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0021	shell	direct	high	3503	1.0	GCA_009295985.1_02234
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2324452	2324763	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	21258	21569	GCA_009295985_1_1_2050	GCA_009295985_1_1_2050	-	4596548	.	PFAM:PF08748.10	tail-assembly-chaperone	MAVKFTLVPSPTFKVDVTIPRAGLDDGILTFTFRHMPVNEVINMEKVEGQSGLDFAEKFIEGWALPEVFSRENLEVLANNYPKAIEAIVGAFYRELLGNREKN*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0022	shell	direct	high	311	0.997	GCA_009295985.1_02235
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2324776	2325696	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	21582	22502	GCA_009295985_1_1_2051	GCA_009295985_1_1_2051	-	4596548	.	PFAM:PF08813.10	tail-tube-protein	MGFALPNGAGIYLAKTYETEVAVTAVSNAVDAVLTVATGHDIAEGDIVQLTSSWGALNDLAAKVTASTTTSLTLGSIDTSNTDRFAVGGGVGTVKKIASWIEIPQITEVANSGGDQQMIQIQFLSDTRQRNLNTFKAAQSQTLTLAHDYSQPVYPVLRAADESEQTLATYMYVPKAKENRYSTVKVSFNDIPTTAINAIETVAVVFNLQSQAMTFYKAGIAVPVTGVTLNKTTTILAVAATETLTATVAPANATNKSGAWSSSAPTKATVDPVTGVVTGVAAGSVNIIYTTADGAKTATCAVTVTA*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0023	shell	direct	high	920	0.999	GCA_009295985.1_02236
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2325762	2326169	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	22568	22975	GCA_009295985_1_1_2052	GCA_009295985_1_1_2052	-	4596548	.	PDB:2L25_A	tail-completion-protein	MSTQRITALLEKRLGEWAAIKGIPLAAENVSFDDTGTMYLQSHVMPATTDAIDLAQVSRVFRGVYQININVKAGGGKSKSHIIAAELIELFNLNTELTDGVVTCYINSVPSQFPSITNGISYTTPISMSYRADVI*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0024	shell	direct	high	407	0.998	GCA_009295985.1_02237
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2326166	2326750	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	22972	23556	GCA_009295985_1_1_2053	GCA_009295985_1_1_2053	-	4596548	.	PFAM:PF04883.11	tail-component	MADNSSFMASINAFIEKGKRNQELVVQKGAIKILNRLVTMSPVGNPDLWAINNTAVSYNDAVFEHNEELKKDSANLTKTGRLKKRARVTDSMDVKAPAGYTGGRFRGNWQVSLDVQQEGETGRKDPNGNITIAVGNYMIEQFKVGTKAIYFTNNVPYAYPLEFGHSSQAPSGMIRITAEDAVKYFTEAANEVNK*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0025	shell	direct	high	584	0.998	GCA_009295985.1_02238
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2326752	2327102	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	23558	23908	GCA_009295985_1_1_2054	GCA_009295985_1_1_2054	-	4596548	.	PFAM:PF05354.10	Head-Tail-Connector-Protein	MAINYPRMRATATRLFTENGATYQLTRGGGVEFVGGVEVDIPLESFPVIGVISSYSPGEIDGTLIQNGDVKMSATADVEIRIGDLIMVDGKKHRVIKPNPVKPAALLICYKPQLRA*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0026	shell	direct	high	350	0.997	GCA_009295985.1_02239
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2327104	2327358	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	23910	24164	GCA_009295985_1_1_2055	GCA_009295985_1_1_2055	-	4596548	.	.	hypothetical protein	MTAKLNIIQFAGYDKADHNKANVIRLLKEALEFAENGNPQSIAIIMISNGDVMDCYHHGGAPYVMVGAIESLKTDYIHSQIERR*	.	hypothetical_protein	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0027	shell	direct	high	254	0.996	GCA_009295985.1_02240
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2327355	2327885	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	24161	24691	GCA_009295985_1_1_2056	GCA_009295985_1_1_2056	-	4596548	.	CDD:cd08053	Head-Tail-Connector-Protein	MVMTMGAVAPFLLEERMLVTDPTSPDFNSYASAENLTAFALARAMHLPTETEPLLIKAMDYLNGLNWYGSRAKLTQPLPWPRSDIIFDGFSYPSTNIPPQLITAQCMLAVEAIDGELLGSNREAAIKSEAVSGAVSITYAVSDTESFTPNYPAVMAILRGFVAGSGFAINAIARRE*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0028	shell	direct	high	530	0.998	GCA_009295985.1_02241
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2327885	2329090	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	24691	25896	GCA_009295985_1_1_2057	GCA_009295985_1_1_2057	-	4596548	.	PDB:4AN5_F	Major-Capsid-protein	MTTTVNSDLIIYNDLAQTSYLERRQDNLDVFNASSNGAIVLDNALIEGDFRKRAFYQLGGSIEHRDVDSTGKVTGKKIGAGESVGVKAPWKYGPYQTTEEAFKRRGRDVSEFSEIVGVDVADASLEGFIKYGIQALSASIGANPDMVVTANIEVDGKKTLTKGMRKYGDRFGRIALFVMHSSTYFDIIDQAIAAKIYEEAGVVVYGGQPGTLGKPVLVTDTAPIDAIFGLLPNAVVITESQAPGFRSYPINDEENLGVGYRAEGTINIDLLGYSWDETNGGKNPSLTEIGATNSWKKHATSNKVTAGVMIKLVAEDVVAAGVILNKSTTSLVVGAEETLVATVAPSDAANKAVTWASSAAAKATVDANGKVTAVAAGSATITAKCVDGNFTATCVVTVTAA*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0029	shell	direct	high	1205	0.999	GCA_009295985.1_02242
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2329104	2329877	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	25910	26683	GCA_009295985_1_1_2058	GCA_009295985_1_1_2058	-	4596548	.	PFAM:PF06810.10	minor-structural-protein-	MLFRNIARKYYAEAGEGGEGGGGAAAAITPEIQALIDARVNESVTGLKTKNSELLGKLKEQGENLKRYDGIDPDAVKTILQRFSDDEEAKLIAAGKIDEVLDKRTERLRADVDKKLKVANERAEKAENFSKKFSDRVLGDAIRSAALKTGALPGAADDIILRAKGVFTLNDEGEAVAVDKDGSALLGKDGKTPLTPHEWAESLKDVAPHLWPQAEGTNAGGHKPNSGALKRSTMTSAQKADFIRANGSQAFLKLPKE*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0030	shell	direct	high	773	0.999	GCA_009295985.1_02243
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2329999	2331111	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	26805	27917	GCA_009295985_1_1_2059	GCA_009295985_1_1_2059	-	4596548	.	PFAM:PF04233.13	minor-capsid-component	MATINERLRDEVIAHSLFQSRYGAGVARKMVKVLNESDAELSARLIVALDELNPNSVTVKRLESLLASVRQVNKQAVDAMYTSLSDELLDFAKHEVSYQLSLFDSLLPGPVLNHFPLASITKEQVYAAAMAQPFQGRLLRDWAENIEADRMTRIINTVKNGYLAGDTVEQMARKVRGTRARNYQDGAIEAGRKNVTAVVKTAVTHMAAVARDKFADNNSNIIDAKQWLSTLDNKTSHDCIIRDRLKYTLEGKPIGHKIPYLQGPGRIHFCCRSMETLITKSWRELGIDIDEMDEGTRASMDGQVPAGTTYSEWLQRQSYRRQVQVLGETRARLMQDGGMRTDEFFTDKGEWITLQQLRDIDGRAFSDAGL*	common_virus_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0031	shell	direct	high	1112	0.999	GCA_009295985.1_02245
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2331112	2331753	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	27918	28559	GCA_009295985_1_1_2060	GCA_009295985_1_1_2060	-	4596548	.	PDB:7Z4W_L	Portal-Protein	MALTEINLGHYRNSADYEDSLFFCGQVQPWISGLTEEWRDWLQKAGVALGSRSPILLPKDGASGFNQAQPNMIAKEGMDSKRDYMISLGARLVEQNSAVKTATQATGDQAASTSVLGICCANVSEAYTQALLWCAKYMGDKDAEVAYSISQEFIQRVADSGMLAAIVAAWQSGAIRDADMIRAMQKLDIIDPESNPNDVLDELKNQSPSLTGG*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0032	shell	direct	high	641	0.998	GCA_009295985.1_02246
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2331772	2332500	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	28578	29306	GCA_009295985_1_1_2061	GCA_009295985_1_1_2061	-	4596548	.	PDB:2JES_G	Portal-protein	MANNDITFIRPEHGAASPLWETVRDVCRGPDVVKRRRHKYLPKLDPTNNSEENNRRNDDYLRRAVFYAITGHTKNGLIGMAFRRDPTVTIVDKMEYLKTNANGAGISIYQQAQSVLESVLEVAREGLYVDYSADMKGAIILNYRAEDIINWRTERINGRDKLVLVVLRECVEEPDGYGFKDRIQYRELAMDGGRFVCRVWRNVGPKKSGVYVVDSEYYPVIQFGGAWDEIPFTFVGAQNNDP*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0033	shell	direct	high	728	0.999	GCA_009295985.1_02247
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2332500	2333474	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	29306	30280	GCA_009295985_1_1_2062	GCA_009295985_1_1_2062	-	4596548	.	PDB:2O0J_A	Large-Terminase	MAVTQNYGQAPEGRAGYFFDYCQDAEKSQLQGKLLSNLDWKFFFFSWWKNPQYAIDPVEALPQRLVDYFSEMEAKHGVQLNERQKAWYYAKEKTLGDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYTNKRICKLPDNSHLPVHTFWDIGVGDSTAIWFVREVGEEFHIIDYYENSGEGLRHYMKVLKDRGYTYGDHWGPHDIENREFGSDAKSRKELAREGYEIDGQVYSMTFKVVPKTGVDTGIESVREILSKCVFDEEKCAEGITHLEGYRKEWDDKRGCWKDKPLHDHTSHGSDGFRYFAVAKNNKRQEAFSINMRTAY*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0034	shell	direct	high	974	0.999	GCA_009295985.1_02248
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2333479	2334687	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	30285	31493	GCA_009295985_1_1_2063	GCA_009295985_1_1_2063	-	4596548	.	PFAM:PF00872.17	Transposase,-Mutator-family	MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL*	common_virus_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0035	persistent	direct	high	1208	0.999	GCA_009295985.1_02249
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2334735	2335313	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	31541	32119	GCA_009295985_1_1_2064	GCA_009295985_1_1_2064	-	4596548	.	PDB:5OE8_A	Large-Terminase	MLTDKQKKLLKNRFWRLNHLYKIKDKNGKCVTFKMTPEQLEYFDGMHDRNVILKARQLGFTTEVCIIQLDLAIFHRKECALIAHTRPDAERLFRNKTQFAYQRMTDDIKKANPLVKETTSEYVFKNGGSVTVSTSFRGGTLYSLHVSEFGKICAKYPDKAKEIVTGAFEAVPLGGKITLESTAEGETVNNIV*	hallmark_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0036	shell	direct	high	578	0.998	GCA_009295985.1_02250
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2335323	2335772	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	32129	32578	GCA_009295985_1_1_2065	GCA_009295985_1_1_2065	-	4596548	.	PF10045.9	Uncharacterized conserved protein (DUF2280)	MAALKPDVKAFIIQALACFDTLSMVAEAVQKEFGIKVTHQQVESHDPTKVSGKGLAKKWVELFTITRERFQTEIASIPIANKAYRLRALDRMAAATEKQKNFGMTAQLMEQAAKEVGDAYTNRQKVEHSGGVAISSVASVMDEIGDDDL*	hhsuite_tools	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0037	shell	direct	high	449	0.998	GCA_009295985.1_02251
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2335803	2336438	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	32609	33244	GCA_009295985_1_1_2066	GCA_009295985_1_1_2066	-	4596548	.	pfam18894	Putative phage metallopeptidase. This entry represents a probable metallopeptidase found in a variety of phage and bacterial proteomes.	MANSDTQMKRPYPPLSFVNEFRPHIELVPATEVLEWVNSQILSDDGELHNPDHGHLIDADIKIMWASSAFEKQGRTVLGQAEQVAMRAGGWQKARMEQQMYEWFGDVPTFIITLAADYCAQCSDLEFCALIEHELYHISHATDEFGAPKFNKEGQPVLKLRGHDIEEFVGVVRRYGASVEVQEMIDAANKPAEVAHLNVARACGTCLLKLA*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0038	shell	direct	high	635	0.998	GCA_009295985.1_02252
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2336895	2337608	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	33701	34414	GCA_009295985_1_1_2067	GCA_009295985_1_1_2067	-	4596548	.	PFAM:PF03374.13	KilA-protein	MKSMIAIEQEASMTSLDFLRNIINPARIEYGEPEVENRHFLSRIEDEIDDLGVAENFYVTTGQGASRAVKGYMLNMEQMTLIGMRESKAVRRSVLAKLKVMHCPVIPQSLPEALRLAADLAEHNAKLKNELAVAAPKADFVDNYVNASGSFGFREACKLLKAKEPEFRAFLIASNVMYVLGGKMTPRAPHIDAGRFTVKTGENLNNGHAFTQAKFTPKGIQWIAGLWASWQLNNQAA*	common_virus_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0039	shell	direct	high	713	0.999	GCA_009295985.1_02253
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2337880	2338038	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	34686	34844	GCA_009295985_1_1_2068	GCA_009295985_1_1_2068	-	4596548	.	.	hypothetical protein	MAKILAYKISIKWWVIPYLHTLNIFCFIFATEPNIDAIGDFIVKHGVKTEIV*	.	hypothetical_protein	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0040	shell	direct	high	158	0.994	GCA_009295985.1_02254
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2338154	2338612	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	34960	35418	GCA_009295985_1_1_2069	GCA_009295985_1_1_2069	-	4596548	.	pfam03245	Bacteriophage Rz lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. This family Rz and the Rz1 protein (pfam06085) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.	MPGKLTTALIAVIAALLVGVTYYQNEAAKLQRDVVEIASVANQQKKDLQLIEAQRQAVAAIDIKTTKELADVKSENERLRTDIASGTKRLQLNATCSKPAPKTTGPASVPDDASARLTNAAERDYLSLRERIGIATSQISGLQDYITNVCLK*	mmseqs_cdd	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0041	shell	direct	high	458	0.998	GCA_009295985.1_02255
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2338597	2339109	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	35403	35915	GCA_009295985_1_1_2070	GCA_009295985_1_1_2070	-	4596548	.	CDD:cd16901	P1-lysozyme	MATIKRIASGSACAVAVIIAIVISAGNVRTSERGLELIGNAESCRRDPYACPAGVLTDGIGNTHGVKAGVIKTDTQIAEDWEKNILDAERCVIRYANGNKLPPSAFDAATSISFNAGCSLMQKSTMFKYFRAGNVTAACEQFPRWIYGGGKKLPGLVTRREKEKALCLES*	common_virus_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0042	shell	direct	high	512	0.998	GCA_009295985.1_02256
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2339140	2339337	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	35946	36143	GCA_009295985_1_1_2071	GCA_009295985_1_1_2071	-	4596548	.	pfam16080	Bacteriophage holin family HP1. Phage_holin_2_3 is a family of small hydrophobic phage proteins called holins with one transmembrane domain. Holins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	MRMEKYTSGSSYGWGAFTVMLGSLSLNEWAIVVGIACTVGTFTINWHYKRKEFQLREKANESSSS*	mmseqs_cdd	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0043	shell	direct	high	197	0.995	GCA_009295985.1_02257
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2339583	2339858	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	36389	36664	GCA_009295985_1_1_2072	GCA_009295985_1_1_2072	+	4596548	.	2LLZ_A	Uncharacterized protein yjdK	MSDFTIRVELHNADSDDYEALHEKMNAKGYKKEITTDGKTYKLPTAEYVCSKDLSASEIRDDVLRIANSIKPKSDVLVTKSNGRAWSLSKA*	hhsuite_tools	hypothetical_protein	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0044	shell	direct	high	275	0.996	GCA_009295985.1_02258
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2339855	2340064	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	36661	36870	GCA_009295985_1_1_2073	GCA_009295985_1_1_2073	-	4596548	.	.	hypothetical protein	MKFAELPHEAQIMAAQTLSDRFPAAGSPKSNGFEPAMALARDAKAAFIELYSTDDDEVCGDKLKLGQDY*	.	hypothetical_protein	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0045	shell	direct	high	209	0.995	GCA_009295985.1_02259
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2340227	2340403	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	37033	37209	GCA_009295985_1_1_2074	GCA_009295985_1_1_2074	+	4596548	.	.	hypothetical protein	MITDKDVVPALASVGFNRYTTFGWVLPRPDLGGWQDSGSFSTHANVETKKPRDIRGLF*	.	hypothetical_protein	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0046	shell	direct	high	176	0.994	GCA_009295985.1_02260
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2340488	2341051	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	37294	37857	GCA_009295985_1_1_2075	GCA_009295985_1_1_2075	-	4596548	.	smart01040	BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	MNTQLSFRNTQFDIANHSGQIWLRGTEIAKALGMEKSDAVSQIYNRNSDEFTEAMTLTLKLSVKGFGNGKSAKDVRVFSLRGAHLIAMFARTEIAKEFRKWVLDILDKEVGNTPPVITPVTKVPAELKSRYRVRVIIYDEMFGNCLELIGKADTFRTIASGIATDLGFKPTGFVAVQMDSSKFKRIY*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0047	shell	direct	high	563	0.998	GCA_009295985.1_02261
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2341322	2341711	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	38128	38517	GCA_009295985_1_1_2076	GCA_009295985_1_1_2076	-	4596548	.	pfam06530	Phage antitermination protein Q. This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.	MRDIQLVLERWGAWVADNREDVYWPPIAAGFSGLIPSKVKSRTQCCDEDGLIISGIMAGLNSKHPVVHSLLFDYYVFGKTFMQLSKEHHCSDTHIGKKLQNAEGVIDGYLMALEVKLEMDKQVRRELAA*	mmseqs_cdd	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0048	shell	direct	high	389	0.997	GCA_009295985.1_02264
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2341712	2342317	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	38518	39123	GCA_009295985_1_1_2077	GCA_009295985_1_1_2077	-	4596548	.	PFAM:PF05766.11	NinG-recombination-protein	MNKLPKNRNCKVCKTRFKPETVYQWWCDEEHKEEYIKQLALKARQNRIQKTEQRRREETQAERRSLKIRKLAVKPLSYFAKQAQQAFNEYIRTRDAGDACVSCGRFHEGQYHAGHYLTVGANPELRFNEDNCHRQCAPCNNHLSGNIEKYTPNLIAKIGQVRFDILMGPHEMTNYRRDDYIRIRDEYRAKTKALKKLREAA*	common_virus_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0049	shell	direct	high	605	0.998	GCA_009295985.1_02265
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2342391	2342837	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	39197	39643	GCA_009295985_1_1_2078	GCA_009295985_1_1_2078	-	4596548	.	pfam05772	NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	MDKKVFVLCGDQYKRNAIQFISQLPVNPDKPLLITIQERTRTLDQNARLWATLGDIAKQVVWHGQKLSSEDWKHIFTASLKGQRSAPGLEGGFVVLGQSTSRMTVGELRDLIELINAFGATHGVKFSDESRLAIEWANRFGDKGKVAA*	mmseqs_cdd	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0050	shell	direct	high	446	0.998	GCA_009295985.1_02266
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2342864	2343562	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	39670	40368	GCA_009295985_1_1_2079	GCA_009295985_1_1_2079	+	4596548	.	PDB:2G1P_B	Adenine-specific-DNA-methyltransferase	MLRKERSYAEIYNDLDGDVVNLFFVLRDMTLRECLIEALILTPYSRDEFTDAYGEAETMVERARKLVIRATMGFGSAGATKGTTGFRLDTKRGSATAQHLWARMPENLAAVGQRFEGVLVENRDAVQCMLDHDTVSTLHFVDPPYVHDTRVISSRYYRHEMDNDAHLTLLDTVNNLEGMVVLSGYNTDMYNDILTGWQKQEKQSSAAGRKGSVKRLECLWLSPNVLSGSKAA*	common_virus_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0051	shell	direct	high	698	0.999	GCA_009295985.1_02267
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2343862	2344122	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	40668	40928	GCA_009295985_1_1_2080	GCA_009295985_1_1_2080	+	4596548	.	pfam06806	Putative excisionase (DUF1233). This family consists of several putative phage excisionase proteins of around 80 residues in length.	MDNVIQMNPSKWVSEDLLMSLNGMTKHMIQHARRKSWMEGREYIHVAPDLNPKENSPIMYNRQEIDNWVERQRPAIRRRIGERISA*	mmseqs_cdd	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0052	shell	direct	high	260	0.996	GCA_009295985.1_02268
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2344290	2345069	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	41096	41875	GCA_009295985_1_1_2081	GCA_009295985_1_1_2081	-	4596548	.	PDB:4M4W_K	Replicative-helicase	MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE*	rep_hall_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0053	persistent	direct	high	779	0.999	GCA_009295985.1_02269
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2345069	2346091	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	41875	42897	GCA_009295985_1_1_2082	GCA_009295985_1_1_2082	-	4596548	.	PDB:1BCO_A	Mu-Transposase	MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA*	common_virus_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0054	persistent	direct	high	1022	0.999	GCA_009295985.1_02270
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2346236	2347399	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	43042	44205	GCA_009295985_1_1_2083	GCA_009295985_1_1_2083	+	4596548	.	PDB:1Z19_B	Integrase	MAGELRESVRYTIKIGNFNYAAQFPNSKQLHKFGVAQLNVTVSQLAEKWLALKVMEITKNGISRYRSYIKICAGIIGEERLVSSITNEMVLSLRKELLTGFQIAGVHQKTRQLKKGRSVRTVNVYLSCFAAMMEFAVANGYIERSPFVGISPLKKSKSEPDPLTRDEYARLMEVAPSLQVKNIWKLAVSTGMRHGEICALAWEDIDLKEWTITISRNMAVVHHFTPPKTESGNRTIKLTNSAIEALKEQMALTKMGKKIKVDVHLREFGKIRKDDCTFVFSPRLSARNGKGGDWYSPGVFSGTWNFALKKAGIRHRKAYETRHTFACWALSAGANPNFVANQMGHTSSQMVYSVYGKWMSENNSNQMDILNARFTGDAPYMPRAISQ*	common_virus_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0055	shell	direct	high	1164	1.0	GCA_009295985.1_02271
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2347426	2347872	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	44232	44678	GCA_009295985_1_1_2084	GCA_009295985_1_1_2084	-	4596548	.	PRK05170	YcgN family cysteine cluster protein. 	MSQPPFWQQKTLAEMSDSEWESLCDGCGQCCLNKLIDEDTDEIYFTNVACDQLNIKTCQCSNYERRFELEEDCIKLTRENLVTFAWLPPTCAYRLIGEGHDLPRWHPLLTGSKAAMHGERISVRHIAVRESEVVDWQDHILNKPSWAK*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0056	persistent	direct	high	446	0.998	GCA_009295985.1_02272
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2347975	2348631	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	44781	45437	GCA_009295985_1_1_2085	GCA_009295985_1_1_2085	-	4596548	.	PRK10691	fumarylacetoacetate hydrolase family protein. 	MYQHRDWQGALLDFPVNKVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDMITPIIPLISYMSRFFTLRAGDIVLTGTPQGVGPMQSGDMLKIMLNGKTVNTRII*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0057	persistent	direct	high	656	0.998	GCA_009295985.1_02273
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2348702	2349787	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	45508	46593	GCA_009295985_1_1_2086	GCA_009295985_1_1_2086	-	4596548	.	TIGR02283	lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]	MKGSVTAVILATAISFGCVSKNAKALVAGGTSPRSTSKSMLTPGATASSTPTMLSQQGRDPSQFPAYVEQLKAQARAKGYTTETLDTAFANIHFVDRVIKSDRNQLEKKITLDDYLTRVLPRKRIEQGRALYQRYQPQLSQVNAQYGVPGRYIVALWGMESAFGQIQGKEDVISALSTLAFEGRREAFFTKELMAALEIIHQGKVDDPQLRGSWAGAMGQSQFMPSSFLTYGADGDSDGKIDIWNNIDDVFASTANYLSTQGWKSEQGWGQEVTLPQDFNVKLAGLDDGQAKSIAQWQKLGITPVQNAHFAESAARVWVIIPDDLKGRAFLVYDNFRTIMHWNRSYYFAISIGMMADSIGQ*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0058	persistent	direct	high	1085	0.999	GCA_009295985.1_02274
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2349928	2350200	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	46734	47006	GCA_009295985_1_1_2087	GCA_009295985_1_1_2087	-	4596548	.	COG3100	Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown]. 	MLCAIYRSPKRDQTYLYIEKKDDFSRVPAELLASFGKPQFAMLLALNERKTLATADVEKVKNALIEQGFYLQVPPPPESLLKMHLGETKA*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0059	persistent	direct	high	272	0.996	GCA_009295985.1_02275
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2350244	2350495	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	47050	47301	GCA_009295985_1_1_2088	GCA_009295985_1_1_2088	+	4596548	.	.	hypothetical protein	MFDKFDTSLCSDTQNDAHCKVAAPPPSQLISAIRVVSTVHTTAMSDKTGTLATITRLVGSRDAYGLMIATIQTPQCQRSLDHR*	.	hypothetical_protein	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0060	.	unmatched_CDS	none	0	0	.
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2350921	2351607	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	47727	48413	GCA_009295985_1_1_2089	GCA_009295985_1_1_2089	+	4596548	.	COG0850	Septum formation inhibitor MinC [Cell cycle control, cell division, chromosome partitioning]. 	MSQSPIELKGSSFTLSVVHLHDSRPEVIRQALQEKVDQAPAFLKNAPVVINVATLPNGANWKDLQQAVTSAGLRIVGISGCQDERQKRAIARAGLPLLSEGKGQKLAPEPVISPPENVPTQTRIINTPVRSGQQIYARNCDLIVISSVSAGAELIADGNIHIYGMMRGRALAGASGDAKCQIFCTHLGAELVSIAGQYWLSDQIPLEYFGQAARLYLQDNTLTIQPLN*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0061	persistent	direct	high	686	0.999	GCA_009295985.1_02276
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2351632	2352444	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	48438	49250	GCA_009295985_1_1_2090	GCA_009295985_1_1_2090	+	4596548	.	PDB:3EZ9_B	ParA;-dna-binding,-winged-hth-protein	MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTDNLYILPASQTRDKDALTKEGVEKVLNDLGEMNFEFVVCDSPAGIESGALMALYFADEAVITTNPEVSSVRDSDRILGILSSKSRRAENSQEPIKEHLLLTRYNPGRVNRGDMLSMEDVLDILRIPLVGVIPEDQSVLRASNQGEPVILDKESDAGKAYEDTVDRLLGEERPFRFVEEEKKGFLKRLFGG*	common_virus_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0062	persistent	direct	high	812	0.999	GCA_009295985.1_02277
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2352448	2352717	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	49254	49523	GCA_009295985_1_1_2091	GCA_009295985_1_1_2091	+	4596548	.	PRK00296	cell division topological specificity factor MinE; Reviewed	MALLDFFLSRKKPTANIAKERLQIIVAERRRGDSEPHYLPDLKRDILAVICKYIQIDPEMLHVQFEQKGDDISVLELNVTLPETEETPK*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0063	persistent	direct	high	269	0.996	GCA_009295985.1_02278
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2352954	2354075	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	49760	50881	GCA_009295985_1_1_2092	GCA_009295985_1_1_2092	-	4596548	.	PDB:5DKU_B	Prex-DNA-polymerase	MNYQLITTNNALQQVCEQARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQPFRALLQDLNVVKYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFSGRSLSCGFAMLVAEFEGVELDKSESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECLLLCRRRSETLDPELAYREITNAWQLRGHQLACLQKLAEWRLRQARERDLAVNFVVREEHLWQVARYQPTSLGELDSLGLSGQEIRYHGRTLLALVAEGNAVPEDQLPPPIANLIDQPGYKKVFKDIKALIQSVSERSGLSSELLASRRQINQLLNWHWKLKLSDAQPELLTGWRGDLLSSELLEILQHY*	common_virus_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0064	persistent	direct	high	1121	0.999	GCA_009295985.1_02279
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2354235	2355923	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	51041	52729	GCA_009295985_1_1_2093	GCA_009295985_1_1_2093	-	4596548	.	PRK08974	long-chain-fatty-acid--CoA ligase FadD. 	MEKVWLKRYPADVPAEIDPDRYSSLIEMFENAALRYADQPAFINMGEVMTFRKLEERSRAFAAYLQQGLGLQKGDRVALMMPNLLQYPIALFGVLRAGMIVVNVNPLYTPRELEHQLSDSGAVAIVIVSNFAHTLEKVVFKTQVRHVILTRMGDQLSAAKGTLVNFVVKYIKRLVPKYYLPDAISFRTVLQKGRRMQYVKPDVINTDTAFLQYTGGTTGVAKGAILTHRNMQSNLEQAKAAYAPLLQPGRDLVVTALPLYHIFALTVNCLLFIELGGRSLLITNPRDIPGMVKELSRYPFTAITGVNTLFNALLNNEEFTHLDFSTLRLSVGGGMPVQKAVAEKWETLTGKHLLEGYGLTECSPLVTGNPYDLKHYSGSIGLPVPSTDVRLRDDDGNDVELGKPGELWVRGPQVMLGYWQRPDATDDVLKDGWLATGDIATMDEDGFLRIVDRKKDMILVSGFNVYPNEIEEVVALHAKVLESAVIGVPNEVSGEAVKVFVVKKDASLTPEELLTHCRRYLTGYKVPKIVEFRDELPKSNVGKILRRELRDEEVKVGTTDAA*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0065	persistent	direct	high	1688	0.999	GCA_009295985.1_02280
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2356567	2357172	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	53373	53978	GCA_009295985_1_1_2094	GCA_009295985_1_1_2094	-	4596548	.	TIGR00752	outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation. [Cell envelope, Other]	MAMNTSMTQSKKFRNHKWMYGWLGLGALLLSGCVTIPPAIQGTTATPLQDLNLIRSAPKLFIGQEARFGGTVVNVKNEPNRTRLEIASVPLDSGARPILGEPSQGRVIAYVDGFLEPVDFRGHLVTVVGPIVGVEAGKIGMTPYNFVVIKATGYKRWHIAQQVIIPPTFGPWGYRPADMWGPGWPGWYNPGPAEIQTIVTD*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0066	persistent	direct	high	605	0.998	GCA_009295985.1_02282
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2357309	2358007	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	54115	54813	GCA_009295985_1_1_2095	GCA_009295985_1_1_2095	-	4596548	.	COG1214	tRNA A37 threonylcarbamoyladenosine modification protein TsaB [Translation, ribosomal structure and biogenesis]. 	MSTRILAIDTATEACSVALWNNGEVQALFELCPREHTQRILPMVQQILASSGLSLQQLDALAFGRGPGSFTGVRIGIGIGQGLALGANLPMIGVSTLQTMAQGAFRLTGATRVLAAIDARMGEVYWGEFERNAEGHWLGEHTEAVMTPAQTLVRAEALSGHWATVGTGWQTYPDLVSGSDIALVDGQMSLPQAEDMLPLALSSWARGDAVKVEQAEPVYLRNEVTWKKLPGR*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0067	persistent	direct	high	698	0.999	GCA_009295985.1_02283
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2358079	2359983	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	54885	56789	GCA_009295985_1_1_2096	GCA_009295985_1_1_2096	-	4596548	.	PDB:2VL7_A	XPD;-HELICAS	MIDDFATDGALAQAIKGFNPRESQRQMAAAISEAIDAKQQLVVEAGTGTGKTFAYLAPALRADCKVIISTGSKALQDQLYSRDLPMMVTALKYKGKLALLKGRSNYLCLERLEQQSLAGGDLASETLVDLVRLRGWSAETVDGDISTCGQVAEDSFVWPLVTSTNDNCLGSDCPLYKDCFVVKARRRAMDADVVVVNHHLFLADMVVKESGFAELIPTADVMIFDEAHQIPDIASQYFGQQLTSRQLMDLAKDIIIAYRTEVRDSAQLQKSADRLTQSTQDFRLVLGDPGYRGNLRDVMEQPTVQRALLLLDDALELCYDVMKLSLGRSAMLDAALERATVYRNRLKRLKDVRTPGYSYWYECNSRHFVLALTPLSVSDRFRELIEEKPGTWIFTSATLSVNDQLSHFTLRLGLTHAKTLLLPSPFDYANQALLCVPRNLPSANEPGAARKLAVLLKPLIDANQGRCFFLCTSHQMMRGLAEEFRASMTLPVLVQGETSKGQLLAQFVAAGNALLVATSSFWEGVDVRGDALSCVIIDKLPFTSPDDPLLKARIEDCRLRGGDPFNDVQLPDAVITLKQGVGRLIRDIDDRGVLVICDNRLVMRPYGAMFLNSLPPAPRTRDLAKAIAFLKQRD*	rep_hall_hmm	common_virus	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0068	persistent	direct	high	1904	0.999	GCA_009295985.1_02284
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2360114	2360458	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	56920	57264	GCA_009295985_1_1_2097	GCA_009295985_1_1_2097	+	4596548	.	cd06150	This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function.  The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	MSIERINPEKRWSDAVIHNDTIYYTSVPENLDADITAQTANTLAAIDMMLHQLGSDKSRVLDATIFLADKADFAGMNAAWDAWVVDGNAPVRCTVEAKLMNPDYKVEIKIIAAI*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0069	persistent	direct	high	344	0.997	GCA_009295985.1_02285
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2360590	2360919	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	57396	57725	GCA_009295985_1_1_2098	GCA_009295985_1_1_2098	-	4596548	.	PRK10650	multidrug/spermidine efflux SMR transporter subunit MdtI. 	MQQLEFYPIAFLILAVMLEIVANILLKMSDGFRRKWLGILSLLSVLGAFSALAQAVKGIELSVAYALWGGFGIAATVAAGWILFNQRLNYKGWIGLILLLAGMVMIKLS*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0070	persistent	direct	high	329	0.997	GCA_009295985.1_02286
GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote	cenote	CDS	2360906	2361349	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C148	57712	58155	GCA_009295985_1_1_2099	GCA_009295985_1_1_2099	-	4596548	.	PRK10452	multidrug/spermidine efflux SMR transporter subunit MdtJ. 	MIYWIFLGLAIIAEIIGTLSMKYASVSGEMTGHIVMYFMITGSYVMLSLAVKKVALGVAYALWEGIGILIITIFSVMWFGETLSPLKIAGLVTLIGGILLVKSGTRKPKQPNCHRGNRPPSVQELKTQTTGHHKGVAVESGEHHAAA*	mmseqs_cdd	nonviral_gene	C148	58155	2303195	2361350	GCA_009295985.1|CP045158.1@region_2303196_2361350@tool_cenote_CDS_0071	persistent	direct	high	443	0.998	GCA_009295985.1_02287
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3057939	3058646	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	1	708	GCA_009295985_1_1_2710	GCA_009295985_1_1_2710	-	4596548	.	PRK10839	16S rRNA pseudouridine(516) synthase RsuA. 	MRLDKFLSQQLGVSRALVARELRAKRVTIDGEVVKSGAIKLTPEQDVRFDGNPLQQMVGPRYFMLNKPQGYVCSTEDPDHPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHRVTSPRHHCEKTYLVTLEHPLSDDTAQQFADGVQLYNEKSLTKPAQLDVIEPQRVRLTISEGRYHQVKRMFAAVGNRVIELHRERIGDITLDDDLAPGEYRPLTTEEIASVGAPHL*	mmseqs_cdd	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0001	persistent	direct	high	707	0.999	GCA_009295985.1_02939
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3059169	3060926	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	1231	2988	GCA_009295985_1_1_2711	GCA_009295985_1_1_2711	+	4596548	.	PDB:1RIF_B	DNA-helicase	MAFTLRPYQREAVDATVAYFRRHTTPALIVLPTGAGKSLVIAELAKLARGRVLVLAHVKELVAQNHAKYCAYGLEADIFAAGLQQRQSEGKVVFGSVQSVARNLPLFDSAFSLLIIDECHRISDEDDSQYQQIIQHLRTGNPQLRLLGLTATPYRLGKGWIYQFHYHGITRGDEKALFRDCIYELPLRYMIKHGFLVPPERLDMPVVQYDFSRLTSNSDGLFREADLDRELKQQQRITPHIVSQIIEYAAQRRGVMIFAATVEHAKEVYGLLPKGEAALVSAGTPPTERDALINAFKQQQLRYLVNVSVLTTGFDAPHVDLIAILRPTESISLYQQIVGRGLRLFPGKEDCLILDYAGNPHDLFTPEVGTSKPHSGSQPVQVFCPDCGFANIFWGKCTESGEIIEHYGRRCQGWFEDDQGARAQCDYRFRFKSCPHCGAENDIAARRCHQCQAVLVDPDDMLKAALKLKDALVLRCGGMQLETGQDAKGEWLKATYYDEDGTNTSERFRLTTPAQRMAFEQIFLRPHQRAPGIALKWHTAADIIAQQALLRYPDFVVARRRGQWWQIREKVFDYKGRFRRADALA*	rep_hall_hmm	common_virus	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0002	persistent	direct	high	1757	0.999	GCA_009295985.1_02940
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3061088	3061372	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	3150	3434	GCA_009295985_1_1_2712	GCA_009295985_1_1_2712	+	4596548	.	PRK05943	50S ribosomal protein L25; Reviewed	MTTINVEVRNDQGKGASRRLRAANKFPAIVYGGSEAAISIALDHDTTKNLELKPGFYDSVLTLVIDGKETKVKVQAVQRHAFKPKLTHIDFVRV*	mmseqs_cdd	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0003	persistent	direct	high	284	0.996	GCA_009295985.1_02941
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3061511	3061969	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	3573	4031	GCA_009295985_1_1_2713	GCA_009295985_1_1_2713	-	4596548	.	PDB:2XO6_A	TN-transposase	MRDEKSLAHTRWNCKYHIVFAPKYRRQVFYREKRRAIGSILRKLCEWKNVNILEAECCVDHIHMLLEIPPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTARIQEYIKHQLEEDKMGEQLSIPYPGSPFTGRK*	common_virus_hmm	common_virus	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0004	persistent	direct	high	458	0.998	GCA_009295985.1_02942
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3062170	3063174	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	4232	5236	GCA_009295985_1_1_2714	GCA_009295985_1_1_2714	-	4596548	.	PRK00378	nucleoid-associated protein NdpA; Validated	MSLDIDQIALHQLIKRDEQTLDVVLRDSLLPTNAVVEEMMAELHRVYSAKSKAYGLFNEQSELADALKRSRKGDEDFLSFSRAATGRLRDELAKYPFAEGGVVLFCQYRYLAVEYLLISVLSSCHSMRVNEQLDLSTTHYLDINRADIVARIDLTEWETNPESTRYLTFLKGRVGRKVSDFFMDFLSAAEGLDTKAQNRGLLQAVDDYCADAELGKNERQAYRQQVYSYCNEQLQAGEEIALQVLAQELPKLGEKDFQQFSAEQGYALEESFPADRGTLRQLTKFAGSGGGLSINFDALLLDERIFWDAATDTLTIKGTPPNLRDQLQRRAGSK*	mmseqs_cdd	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0005	persistent	direct	high	1004	0.999	GCA_009295985.1_02944
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3063352	3063579	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	5414	5641	GCA_009295985_1_1_2715	GCA_009295985_1_1_2715	+	4596548	.	2JUZ_B	UPF0352 protein HI0840	MPQSSRYSDEHVEQLLSELVSVLEKHRTPTDLSLMVLGNMVTNLINTSIAPAQRKVLARSFAEALQASVREDKAH*	hhsuite_tools	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0006	persistent	direct	high	227	0.996	GCA_009295985.1_02945
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3063607	3065403	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	5669	7465	GCA_009295985_1_1_2716	GCA_009295985_1_1_2716	+	4596548	.	NF038282	LPS biosynthesis-modulating metalloenzyme YejM. YejM (LapC, PbgA) belongs to a regulatory system that controls the activity of LpxC, the enzyme that catalyzes the first committed step in the LPS synthesis. The earlier report (2015) by Dalebroux, et al (PMID: 25856753), which assigned a role in cardiolipin transport and introduced the name PbgA (phoPQ-barrier gene A), is no longer considered accurate.	MVTNRQRYREKVSQMISWGHWFALFNILFSLVLGSRYLFVSDWPSSLIGRVYALVSWLGHFSFLVFAAYLLVIFPLTFVVMSQRLLRFLSAAFATAGLTLLLVDTEVFARFHLHLNPVVWELVVNPEQTELARDWQLMFISVPVIFLIEMLFGTWAWQKLRSLNRQRFVKPLVAVLISAFVASHLMYIWADANFYRPISMQRANLPLSYPMTARKFLEKHGLLDQQEYQRRLTEQGNPDALAVEYPLNPITFNDKGSGYNLLLIVVDGIRVSSLQQDMPALAEFGRENIQFDHHYSSGNRQDTGLFGLFYGISPTYWDGILSAREPSAFITALGAQGYQFGLFASDGFKSALYRQALLADFTLPAPVAQADAETTAQWKQWLASTAANSNPWFSYISLSGPAEAQDPVIGQKVALPTDFIRNYQSGAKEVDQQIAAILETLKQSGQLDKTVVIITATHGVEFNDSGNNYWGTGSSFNRQQLQVPLVVHWPGTPPQNVGKLTNHEDVMTTLMQRLLHVKTAPEDYSQGEDLFAAQRNNNWVATGDNGILVITTPTQTIVLDNNGGYRTYDQQGHEVKDEKPQLPLLLQVLTDVKRFIAN*	mmseqs_cdd	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0007	persistent	direct	high	1796	0.999	GCA_009295985.1_02946
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3065496	3066017	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	7558	8079	GCA_009295985_1_1_2717	GCA_009295985_1_1_2717	+	4596548	.	COG5519	Uncharcterized protein, DUF927 family [Function unknown]. 	MPQHRHVAQLGSAPSWGVGGRRFKSFHADQIPQQNQSIRVGFVVCGVWLRCETGWDEQECRDAAQHNFNAWIKEFGTGNKKHQQIIELTEGFLNAYGLSRFAPLPYDPQSLPIRDLAGYRDKGKHDRDAMVFYTFPAAFEGEMARGFNVKHFAKSISGRRDVNPTSKRARLSA*	mmseqs_cdd	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0008	.	unmatched_CDS	none	0	0	.
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3066374	3067282	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	8436	9344	GCA_009295985_1_1_2718	GCA_009295985_1_1_2718	+	4596548	.	.	hypothetical protein	MSFNLPGMYLYYLSRDNLAPEEYERIISPHAAWARICREYEFDDSHNTRRYLINMREREQRSSPDQPRPGGIREKEKLEKLVFSGDVVMLSDLYGPARLFYINGEGQLMSADPHAFRFEGAAKIIKAFDDSVKCRNYQRTGGKPRPTKSPMKVRPSVSELPVPKAFGTINSKAAGRLLAAGGVYNQNPEMFADTAKKLGGDAAEGFDQVLNEQSAGSLVALSSMVMLGRASVAGRPSVASLGELKNYLGKTKGEQKLLNNIDVIKMDYIRRDRAELITMRGQFCNERCNSDPHPTPEIRSRG*	.	hypothetical_protein	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0009	shell	direct	high	908	0.999	GCA_009295985.1_02948
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3067309	3068331	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	9371	10393	GCA_009295985_1_1_2719	GCA_009295985_1_1_2719	+	4596548	.	PDB:1BCO_A	Mu-Transposase	MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA*	common_virus_hmm	common_virus	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0010	persistent	direct	high	1022	0.999	GCA_009295985.1_02949
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3068331	3069110	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	10393	11172	GCA_009295985_1_1_2720	GCA_009295985_1_1_2720	+	4596548	.	PDB:4M4W_K	Replicative-helicase	MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE*	rep_hall_hmm	common_virus	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0011	persistent	direct	high	779	0.999	GCA_009295985.1_02950
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3069149	3069481	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	11211	11543	GCA_009295985_1_1_2721	GCA_009295985_1_1_2721	+	4596548	.	.	hypothetical protein	MDHFSSVVDKFRGMRSKFLKSISDNPEVKKRFDSATLADLANGKAPKGWDVHHKLPLDDSGTNDVGNLVLIKRDFEHNLFTNTQSNITRQIGTNGAKEILWPVPKGVIYP*	.	hypothetical_protein	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0012	shell	direct	high	332	0.997	GCA_009295985.1_02951
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3069494	3069982	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	11556	12044	GCA_009295985_1_1_2722	GCA_009295985_1_1_2722	+	4596548	.	NF038335	YrhA family protein. Members of this family include YrhA from Escherichia coli, which is found as a pseudogene in the K-12 model strain, and YPO0640 from Yersinia pestis. Only full-length forms are used in the seed alignment for this HMM. The function of this protein family is unknown.	MTQLNNIVDELNSLALKLEYDVLPPAVFPSSLYEYDFGLKIGKAPQEFWDQYKALVELADGFDLDGFRMYGIEKHGDYENDLFTYNGYKARLDKEAPSLMSDESRYCIEIGSSSLDTYTYDVRYGKWESRDRVQYDNLFISCSNLIDFLAAILAEIREANVQ*	mmseqs_cdd	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0013	shell	direct	high	488	0.998	GCA_009295985.1_02952
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3070253	3070345	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	12315	12407	GCA_009295985_1_1_2723	GCA_009295985_1_1_2723	+	4596548	.	.	hypothetical protein	MALTEEQKALFDALTQLQRRFVTALLEGAN*	.	hypothetical_protein	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0014	shell	direct	moderate	92	0.989	GCA_009295985.1_02953
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3070682	3071044	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	12744	13106	GCA_009295985_1_1_2724	GCA_009295985_1_1_2724	+	4596548	.	.	hypothetical protein	MTSAIKITVGYHSFLLPDTHTDYAFPAYINKHIDLIWRYIENNDKIEELSSNPFSKGRTAVLVKAKFLSSELKEFKLKTGIIGYPFDMKDISLYLASQNIKITLCTEFKRNGTLVNSLPS*	.	hypothetical_protein	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0015	persistent	direct	high	362	0.997	GCA_009295985.1_02954
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3071170	3072606	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	13232	14668	GCA_009295985_1_1_2725	GCA_009295985_1_1_2725	-	4596548	.	PRK15014	6-phospho-beta-glucosidase BglA; Provisional	MSYQQLPKDFLWGGAVAAHQVEGGWDKGGKGVSIADVLSGGSHGVDRVMTDGVLEGYRYPNHEAVDFYSHYKEDIALFAEMGFKCFRTSIAWTRIFPHGDEQQPNEAGLQFYDDMFDELLKYGIEPVITLSHFEMPWHLVKEYGGWKNRKVVDFFVKFSEVVMARYKSKVKYWMTFNEINNQRNWKYPLFGYCCSGVVFTEQENPEETLYQVLHHQFVASAKVVKLGHAINPEFKIGCMVAMVPLYPFSCHPDDMMYSVEAMRERYLFGDVHMRGYYPSYILQEWARRGFNIHMEEGDLETLRDGCADYMGLSYYMSNAVSAINPGSGNSLSGFEGSVPNPHVKASDWGWQIDPVGLRYSLSVLYERYQKPLFIVENGFGAIDKVAADGMVHDDYRIAYLKAHIEQMKKAVFEDGVDLMGYTPWGCIDCVSFTTGEYSKRYGFIYVDKNDDGTGTMARSRKLSFDWYKKVIASNGEVL*	mmseqs_cdd	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0016	persistent	direct	high	1436	0.999	GCA_009295985.1_02955
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3072897	3073637	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	14959	15699	GCA_009295985_1_1_2726	GCA_009295985_1_1_2726	-	4596548	.	COG1737	DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains [Transcription]. 	MFTYKEISTLNELELIVYNYIIKNTDKVMYMTIRELADASGVSTTTVLRFCKKMNCDGYSEFRIRFKLYLEHDEKPPVTFGISEIISYFKSINNSEFDELLDNVAKQIAATRRVIFVGIGTSGALGKYSARFFSNVGKYSTYIDDPYYPINSDMYQDAVAIILSVSGETEEIIRIANQFSLQNCKIISLTNSESSTLAKMADLNISYHMPPVILEGQYNITTQIPVLYIIETIGKKLPQLMNKNTK*	mmseqs_cdd	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0017	persistent	direct	high	740	0.999	GCA_009295985.1_02957
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3073935	3074714	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	15997	16776	GCA_009295985_1_1_2727	GCA_009295985_1_1_2727	-	4596548	.	PDB:1OCY_A	Tail-fiber	MQKIGDIPNTRADSNGEFTDGNVAGGVPPTLLPAEWFNTIQRELVTVVQDGGLTLDPNDDTQVLAALKKLFLQSGNNLSEIKDAGPTAITQTLANLGLGEGSAIPVGVPLPWPTATPPEGWLKCNGAIFDKVKYPKLALAYPSGILPDLRGEFIRGWDDGLGVDAGREILSIQGDAIRNISGGIQGRNEATSARLFSSNATGVFRTDGQFGSYAASADVAVGVTDDRLAELFFDASRSVPTANENRPRNIAFNYIVRAA*	hallmark_hmm	common_virus	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0018	persistent	direct	high	779	0.999	GCA_009295985.1_02958
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3074811	3075158	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	16873	17220	GCA_009295985_1_1_2728	GCA_009295985_1_1_2728	-	4596548	.	PFAM:PF10076.8	baseplate-wedge-subunit	MIQRQRAVVAKLFGIGGQSAAYFIRVAKALGYDITVTQYRQACAGMSVCRDALNGEEWPFTWLITAPETTIHNAQCSLTYCSDPLRSWGNKQLECRLAVLNPSHSILKFGYTLLS*	phrogs_hmm	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0019	shell	direct	high	347	0.997	GCA_009295985.1_02959
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3075155	3075415	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	17217	17477	GCA_009295985_1_1_2729	GCA_009295985_1_1_2729	-	4596548	.	PFAM:PF10076.8	baseplate-wedge-subunit	MSRYSVSEYTGALQALMPMGLVWPRRHDGIQTEVLRALANAYQRSDEDAQDLLSAAFPATATALLPEWEATLGLPDLCARLVRSIA*	phrogs_hmm	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0020	shell	direct	high	260	0.996	GCA_009295985.1_02960
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3075412	3076548	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	17474	18610	GCA_009295985_1_1_2730	GCA_009295985_1_1_2730	-	4596548	.	PFAM:PF04865.13	Baseplate-J-like-protein	MPFNRPTLSELRQRNQSYIQSELKTGGNLLRFSNIGVISDADAGMAHLHYGYLDYIARQATPYNATDEYLAAWGALKDVFRKAANPATSNEVRFSGIAGRVIPAGRLLNRADGYQYQLNKEVIIAEQGSALGEITAILPSPLDDATGGGNRGNSPAGTVLTLDIAIDGVQATATALTKISGGADIESEDAFRSRMLLAYQNVPQGGNDTDYQSWALAVPGVTRCWVKRRLMGAGTVGVYIMCDDNDHGGFPQGTDGISSLEEWGAVKATGDQGRVADAIYPQQPIIALVYVCAPVAQAIDFVISGISYADSTTTAAINTAIDEVFFTEGQPGGKILWSSLLLAIGEVPGSGGFIMASPSANIELQTGKLPVRGTVSYL*	hallmark_hmm	common_virus	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0021	persistent	direct	high	1136	0.999	GCA_009295985.1_02961
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3076552	3077007	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	18614	19069	GCA_009295985_1_1_2731	GCA_009295985_1_1_2731	-	4596548	.	COG4381	Mu-like prophage protein gp46  [Mobilome: prophages, transposons]. 	MTTDIKTVWDVNALLGDWQTGNGGLLEGDDLQTAILLSLFTDRLARADDAIDSPDRRGWWGDSGAASAIGSRLWLLRREKLTTQVAIKAEDYATEALAWLIEDSVVAAINVRAHIIAPNTLVLVVSYQQPSQTRSANQTQSSIKFSWVWEE*	mmseqs_cdd	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0022	persistent	direct	high	455	0.998	GCA_009295985.1_02962
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3077004	3077600	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	19066	19662	GCA_009295985_1_1_2732	GCA_009295985_1_1_2732	-	4596548	.	PDB:4RU3_A	phage-baseplate	MSDVSGQISTLYRQIKMLLGIGRVTAFDDSNGVQTVQYQTPLEVHSDTPRLAEFGFSSGLPAGSDVVIGFLGGDRSSGMIIASHHPAYRHMGLNAGETVIYAQWGQFIKLTESGVVIEANNQPVTVNNATEVTVNATVKVRLNTPLLEVSGNIIDNADSNSATLKSLRDAYNSHNHQLKNVQSGSTTLTSETPAKVVR*	common_virus_hmm	common_virus	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0023	persistent	direct	high	596	0.998	GCA_009295985.1_02963
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3077616	3078671	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	19678	20733	GCA_009295985_1_1_2733	GCA_009295985_1_1_2733	-	4596548	.	PDB:1WRU_A	Tail-protein	MNDDLTLEVGGRAITGWSKVKVTRSIEKLPSSFELSLMDRYPASGGQQWVNPGDPCVVKLGNDSVLNGYIDSWDNAITATTHVVSAMGRGKCQDLVDCSAKWPNSVISQSTVLQIAQKLAEPYGITVTSDITDMTIVPTFTLNWGETAQTVIENVTRWAALLYYDQLDGNLLLTRVGNRKAASGVAQGVNILSASLHTDINKRFVDYTGVVLSTNAVARRSPSGGNNTSVLVRVQDTQLAALLPDRYRNRIVIVENTMDSPQLVETSIDWEINRSVGRAKVLTVQVDSWRDREQQLWEINSLIPIDIPALGLRDELWLLSEVVYQKDAKGTVANMVLMPPAAFDVKPYKIK*	hallmark_hmm	common_virus	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0024	persistent	direct	high	1055	0.999	GCA_009295985.1_02964
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3078668	3080074	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	20730	22136	GCA_009295985_1_1_2734	GCA_009295985_1_1_2734	-	4596548	.	COG4228	Mu-like prophage DNA circulation protein  [Mobilome: prophages, transposons]. 	MSLIGNTLSALLGGSDDSWQWSEHLHRASFRGVPFVVVSGQGTFGRRQVTHSYPYRDTSYIEDLGRNTRKIVLKGILIQNSQIYTAPDVMTQRDSLIAACEMSGPGTLVHPTLGEMTVSISEAGLLIDDSFSSERVFSFTLTAIESGLRAFAITGSAEMGASIQSSWLGLSAKAVAGFISTVKGEMRSATQAIKTLKNTAAFWRRMVTGTANEASNLGNALRSTFGRNRYGRYNHGTVGGSSTGATTTVSQQNDTADLSTLVAQRMALVVEGRAALDAALDELLAASSIESHADSVLAVVDALLATGISTRDIIRIMETLALAHDDTFRANDSDRAVADASHHLMATLCTGAMIQVAAQYQPESYDDAVAVLGRVCLVIDNTALVAADRGNDETYRALVQMRESIVTVLQQAGANLSRVGEVSFNRSLPALMLANRLYQDALRGDALVKMANPIHPAFMPIRFKALNL*	mmseqs_cdd	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0025	persistent	direct	high	1406	0.999	GCA_009295985.1_02965
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3080341	3081834	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	22403	23896	GCA_009295985_1_1_2735	GCA_009295985_1_1_2735	-	4596548	.	PFAM:PF01832.19	tail-tape-measure-protein-	MTEIFDFDLAIDAQVTESVSQMNKAIKALVPQFNELRKSVEAINHVIPLFIMRIEGFHNEYGNISGGTRTSSDNSLMTSIANIANSYITGGKFNLIYTIGSEFASAVSQAASEARTVNKVTQNAGAPIDQFSQLYGAMQIRGTDQEAAIKSTERLYNTFNNILWRRDEQGWNLLQDYGLDIASNKNGTVDAPTTLTNMAKEFPQMAPQDQHQLIHILRMDSNAIELLREGGQLTDLLAKSRQYGLTIDPQLNARLTELNIRTNELSMAWDGLKGKASNKLYDVLFSDGTIADGIGGLTDMITYGPDNFSIMRTLGVTQGIDTDKMRRGYNDADFYQQLNFYEKAMLSAGLMTDGFRKKYQGNNEEKNATSAVNAVAINTVAINSDIPEFNLGKDLFNFGAETENTWKNNWLTDIHAEEPSSDFGYNDIDINPVNLSLISPESAGDFNGNAIADVIATAMQNNRVQIELTLIDSRTGETSLIQAQGGARIAHAMELGH*	hallmark_hmm	common_virus	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0026	persistent	direct	high	1493	0.999	GCA_009295985.1_02967
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3081955	3082254	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	24017	24316	GCA_009295985_1_1_2736	GCA_009295985_1_1_2736	-	4596548	.	PFAM:PF10109.8	tail-protein	MAELERSKTISLVKPIAHDASKTTYEVVELSEPTLLQVQQFYDEQTKSGSLSGMGLLIALVSGVPREAIKKMAFTDYKACEVYMMRFLAYSPTGDDGAK*	phrogs_hmm	hypothetical_protein	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0027	persistent	direct	high	299	0.997	GCA_009295985.1_02968
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3082256	3082624	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	24318	24686	GCA_009295985_1_1_2737	GCA_009295985_1_1_2737	-	4596548	.	PFAM:PF10618.8	Tail-tube-protein	MSDTSNRLAGTAYVTVDGITVMVAGSFKYSPSRVKRETVMGMDGVHGYKETINAPYIVCQIRDSGGISVSDFNDQTHVNIVCELANGKTIIGSAMWSVNTQEVDSTEGTLEVRWEGGSVTEN*	hallmark_hmm	common_virus	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0028	persistent	direct	high	368	0.997	GCA_009295985.1_02969
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3082646	3084154	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	24708	26216	GCA_009295985_1_1_2738	GCA_009295985_1_1_2738	-	4596548	.	PDB:5LI4_E	tail-component	MTIPFTNIPSNLRTPLFFAEFDNSQANTASTTQRTLIIGQTRAGSTLPANIPLLVSSTATVAGLSGAGSMLHGQMAAYLANDTAGEIYLLPLSDADSMVAAIGKITINTAASETGVISLYIGGIRVQTTVVATDSVSTIAAALAAAIENQPELPVTVVHTGDMVSEGAVVVLEAKNKGAHGNNIDLRLNYLGNAGGEITPESLVLMITPMAGGAGAPELADGLANLQDRTFDFIINPYTDTASLDAIKDFLSDSTGRWSYRQQLYGHSFAAQSGTYGQLTAAGELRNDQHASLLGIHNSPTPAHIWSAAYVGAIAQSLRNDPGRPLQTLAIRGVLAPPLSSRFTLTERNNLLHSGISTVTVADDSTVQVENIITTYQKNKYGAEDDSYLQIETLFLLMFVTRFLRTQVTSKFARMKLAADGTRFAPGSAIITPNVIRAELIAQYQTLEFNGYVQDAKGFARGLIVEKSASNPNRVDVLWTGVLINQLRIFAVLNQFRLQAAV*	hallmark_hmm	common_virus	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0029	persistent	direct	high	1508	0.999	GCA_009295985.1_02970
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3084151	3084345	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	26213	26407	GCA_009295985_1_1_2739	GCA_009295985_1_1_2739	-	4596548	.	pfam10948	Protein of unknown function (DUF2635). This is a family of phage proteins with unknown function.	MFVKPMAGRAVRDPVKGTFLPEFGTEVPDNAFWRRRLQDGDVVQIAAKPAASVFEELTTESTKL*	mmseqs_cdd	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0030	persistent	direct	high	194	0.995	GCA_009295985.1_02971
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3084350	3084967	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	26412	27029	GCA_009295985_1_1_2740	GCA_009295985_1_1_2740	-	4596548	.	.	hypothetical protein	MTFIDVRRRSFLSGEIMNAAQIRQLAAAALRGKTDAEDRIYLTEAWPITTYPAILLQTPLEVKESIGRNAPQFKTITTLRISGHIQLSEGENPVTVAASALERLCEQIQRAVINSYELTRQIQQFAKVRTTMGIYTALGSDTAARSAATRSEPSVAEVKVELDLEYYQGPEDFFPLETPQLAGIDVTINMPDGAPEPLIAITLSE*	.	hypothetical_protein	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0031	persistent	direct	high	617	0.998	GCA_009295985.1_02972
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3085013	3085303	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	27075	27365	GCA_009295985_1_1_2741	GCA_009295985_1_1_2741	-	4596548	.	PFAM:PF16082.4	holin	MYEQSQFPYWWAGSLALFSLLSLQDFIFILGTIISVIFTIKTYYVNLREKAAIIKEEQRRTEILQNFLQNKTIENIPAAIVVCHKAASQQAIIKRR*	phrogs_hmm	hypothetical_protein	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0032	persistent	direct	high	290	0.997	GCA_009295985.1_02973
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3085934	3086728	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	27996	28790	GCA_009295985_1_1_2742	GCA_009295985_1_1_2742	-	4596548	.	COG3622	Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]. 	MLKFAANLTWLFTEVPFLQRFALAAKAGFPAVECLFPYQEQIADVQQAQKASGIPVVLINAPAGEWENGQRGLASLPDAGEPFRHSVRLAREYAVALGCKQIHIMAGNREESITFDEQYALLIERLRYAADYLMADNIRVLIEPLNNDNMPGYFISSFPLAEKIIHQCERKNIFLQFDVYHCQKIHGNLWANLQHYWPLISHIQIASVPERHEPNKGEVNYPWLFQQLVIKNYPGWIGCEYQPENETFSGLGWLGKNKNIKAFS*	mmseqs_cdd	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0033	persistent	direct	high	794	0.999	GCA_009295985.1_02974
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	CDS	3086704	3087513	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	28766	29575	GCA_009295985_1_1_2743	GCA_009295985_1_1_2743	-	4596548	.	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]. 	MIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGKVVAINGGVKLNNLLKLELAYSEKASLNHELKQNIGVLAAMLIEPGQTLYLDAGTTLFEVAKAVAASNCFNLTVVTNDFTISGYLMDMPHISLYHTGGLVDRRNRSCLGNSAANFLNTINIDVAFLSSSSWDIARGMSTPSEGKAMVKAAVMRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLPLVAQKQIKESGVKLHLVNKEVRAPCSNSQPI*	mmseqs_cdd	nonviral_gene	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_CDS_0034	persistent	direct	high	809	0.999	GCA_009295985.1_02975
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3785346	3786584	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	1	1239	GCA_009295985_1_1_3331	GCA_009295985_1_1_3331	+	4596548	.	PRK10885	multifunctional CCA addition/repair protein. 	MNIYLVGGAVRDSLLNLPVTEQDWVVVGATPEQLLKLGYQQVGKDFPVFLHPVSHEEYALARTERKSGQGYTGFTCYAAPDVTLEDDLLRRDLTVNAIARSADGEFIDPYHGKQDLENRVLRHVSDAFGEDPLRVLRVARFAARFAYLGFTIAPETMSLMSNMAQSGELSALTPERVWKETEKALKTQSPHVYFQVLRDCGALAVLFPEIERLFGVPAPEKWHPEIDTGIHTLMTLAIAAQLSPEVDIRFAALCHDLGKGLTPKEHWPHHHGHGPAGVKLVEQLCQRLRIPNPVRDLAKLVAEYHDLIHTVNKLRPETLLKLFNAIDVWRKPERLEQMIMTSEADARGRTGFENNPYPQGDYLRAAFQIANGVSIQEVVASGLQGLAIRDELQRRRQQALAEWKQTQETASI*	mmseqs_cdd	common_virus	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0001	persistent	direct	high	1238	0.999	GCA_009295985.1_03616
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3786820	3787638	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	1475	2293	GCA_009295985_1_1_3332	GCA_009295985_1_1_3332	-	4596548	.	PRK00281	undecaprenyl-diphosphate phosphatase. 	MTDMYSLFVAFILGVVEGLTEFLPVSSTGHMIIVGELLGFTGDKAKTFEVIIQLGSILAVVVVFWRRLFGLIGIHFGAVPHEGKTNGHLTLGHILLAMIPAVILGLAFHDVIKALFDPKSVMYALVAGGVLLLAAEWLKPKNPKAVGLDDITYRQAFAIGCFQCLALWPGFSRSGATISGGMLVGVNRYAASEFSFILAVPMMIGASGLDLYKSLHFLTLGDLPMFAVGFITAFIVALIAIKTFLSLIKRISFVPFAIYRFIVAAVVYWVFM*	mmseqs_cdd	nonviral_gene	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0002	persistent	direct	high	818	0.999	GCA_009295985.1_03617
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3787912	3788271	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	2567	2926	GCA_009295985_1_1_3333	GCA_009295985_1_1_3333	-	4596548	.	PRK11593	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase. 	MDIVFIEELSVITTIGVYDWEQTIQQKLVFDIEMGWDNRKAAGSDDVNDCLSYADISEAVIQHVGSQRFALVERVAEEVAELLLRRFNSPWVRIKVSKPGAVAQAKNVGVIIERGQRLS*	mmseqs_cdd	nonviral_gene	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0003	persistent	direct	high	359	0.997	GCA_009295985.1_03618
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3788379	3789029	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	3034	3684	GCA_009295985_1_1_3334	GCA_009295985_1_1_3334	+	4596548	.	PRK00220	glycerol-3-phosphate 1-O-acyltransferase PlsY. 	MSAIALGMIIFAYLCGSISSAILVCRVARLPDPRTHGSGNPGATNVLRIGGRTAAVAVLLFDILKGMLPVWIAYLLHIPPLYLGLTAIAACLGHIYPVFFHFKGGKGVATAFGAIAPIGWDLTGLMTGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKPQFTFPVAMLSCLILMRHHDNIQRLWRGKEGKIWDKLRKKKQKTPAEEAAELEEKED*	mmseqs_cdd	nonviral_gene	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0004	persistent	direct	high	650	0.998	GCA_009295985.1_03619
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3789275	3790288	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	3930	4943	GCA_009295985_1_1_3335	GCA_009295985_1_1_3335	-	4596548	.	3ZEU_E	PUTATIVE M22 PEPTIDASE YEAZ, PROBABLE	MRVLGIETSCDETGIAVYDDKAGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKEANLSAKDIDAVAYTAGPGLVGALLVGATIGRALAFAWGVPAVPVHHMEGHLLAPMLEENAPEFPFVALLVSGGHTQLISVTGIGEYLLLGESVDDAAGEAFDKTAKLLGLDYPGGPMLSRMAQQGTVGRFTFPRPMTDRPGLDFSFSGLKTFAANTIRANGDDDQTRADIARAFEDAVVDTLAIKSKRALDQTGFKRLVIAGGVSANQTLRLKLADMMQKRGGEVFYARPEFCTDNGAMIAYAGMVRLRSNLNSELSVSVRPRWPLSELPKV*	hhsuite_tools	nonviral_gene	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0005	persistent	direct	high	1013	0.999	GCA_009295985.1_03620
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3790694	3790909	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	5349	5564	GCA_009295985_1_1_3336	GCA_009295985_1_1_3336	+	4596548	.	COG0828	Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]. 	MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY*	mmseqs_cdd	nonviral_gene	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0006	persistent	direct	high	215	0.995	GCA_009295985.1_03621
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3791045	3792793	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	5700	7448	GCA_009295985_1_1_3337	GCA_009295985_1_1_3337	+	4596548	.	PDB:5IKN_F	DNA-polymerase	MAGRIPRVFINDLLARTDIIDLIDARVKLKKQGKNYHACCPFHHEKTPSFTVNGEKQFYHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGSGTTQIERHQRQSLYQLMESLSAFYQQSLKGQNAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESRTALNDAGMLVTNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRILGDGVPKYLNSPETEIFHKGRQLYGLYEAQVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVRKEGKDAFEQRMEAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGEALRLYLRQQLGNKLGLLDDSQLDKLMPKQIDNANTYQPPQLKRTTMRILIGLLVQNPQLATLIPSLQGLEQAKLAGLPLFIELVETCLAQPGLTTGQLLELYRDNKFSQQLETLATWNHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDRTHGLNAEERKELWSLNLALARKK*	common_virus_hmm	common_virus	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0007	persistent	direct	high	1748	0.999	GCA_009295985.1_03622
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3792951	3794789	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	7606	9444	GCA_009295985_1_1_3338	GCA_009295985_1_1_3338	+	4596548	.	PDB:4XLN_L	DNA-directed-RNA-polymerase-subunit	MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAPDADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTATHVGSELSTEEMDDEDEDEDEDDDAEDDNSIDPELARQKFSDLREQYENARMEIKKNGRNHANAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKNFVTLFSSNETSDTWFNAAVAMGKPWSEKLKDVSEDVQRSLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD*	common_virus_hmm	common_virus	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0008	persistent	direct	high	1838	0.999	GCA_009295985.1_03623
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3795461	3796483	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	10116	11138	GCA_009295985_1_1_3339	GCA_009295985_1_1_3339	+	4596548	.	PDB:1BCO_A	Mu-Transposase	MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA*	common_virus_hmm	common_virus	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0009	persistent	direct	high	1022	0.999	GCA_009295985.1_03625
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3796483	3797262	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	11138	11917	GCA_009295985_1_1_3340	GCA_009295985_1_1_3340	+	4596548	.	PDB:4M4W_K	Replicative-helicase	MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE*	rep_hall_hmm	common_virus	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0010	persistent	direct	high	779	0.999	GCA_009295985.1_03626
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3797272	3797604	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	11927	12259	GCA_009295985_1_1_3341	GCA_009295985_1_1_3341	-	4596548	.	PFAM:PF03592.15	Terminase-small-subunit	MGRTTIHDIATFGNYQIGENEEGQPVFQASWKFKDSKDIKPEHLAAVAELSTGKDGLKIKLHDPKAAIKQLAGMCGWEAPKKAELTGANGGPCQRRMKSDPLISPPTAQY*	hallmark_hmm	common_virus	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0011	shell	direct	high	332	0.997	GCA_009295985.1_03627
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3797582	3797872	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	12237	12527	GCA_009295985_1_1_3342	GCA_009295985_1_1_3342	-	4596548	.	CDD:COG3728	Small-Terminase	MTLTEEQKALFDALTQLQRRFVTALLEGANQTEAYRRAGGKAKGDGERSKASQLVTNSNVQAFLQSVQHETVNAAIMTYTEALERLTLIDGAHDNS*	hallmark_hmm	common_virus	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0012	shell	direct	high	290	0.997	GCA_009295985.1_03628
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3797889	3798344	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	12544	12999	GCA_009295985_1_1_3343	GCA_009295985_1_1_3343	-	4596548	.	NF038335	YrhA family protein. Members of this family include YrhA from Escherichia coli, which is found as a pseudogene in the K-12 model strain, and YPO0640 from Yersinia pestis. Only full-length forms are used in the seed alignment for this HMM. The function of this protein family is unknown.	MANLEKAVNEFTRISKSMGYNINPPYTGKLETYDFGRDISPEQPDFWKQYGSFLRISNGSFADGCVFYGMSGGEDDAGLIEFNNALNIPDFKDETMTGLIVIGGNNTDTFYYDPRTGKWEACDRIGTDRVWESCDSLAELIETQIKMLENG*	mmseqs_cdd	nonviral_gene	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0013	persistent	direct	high	455	0.998	GCA_009295985.1_03629
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3798371	3798841	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	13026	13496	GCA_009295985_1_1_3344	GCA_009295985_1_1_3344	-	4596548	.	NF038335	YrhA family protein. Members of this family include YrhA from Escherichia coli, which is found as a pseudogene in the K-12 model strain, and YPO0640 from Yersinia pestis. Only full-length forms are used in the seed alignment for this HMM. The function of this protein family is unknown.	MTDIEKAVTTFQAYRAAIGYPKIPPYEGEVIEYDFGRKIESNQPDFWTQYHEFLRLSDGLAADGVYFYGIACEGKLIGNRLIDNNDALRDGEMYDESMDGLIAIGSSNSDIFVYDTNTHKWESRDRIAIDDINESYDTLAELIDSQLQRINIGDAF*	mmseqs_cdd	nonviral_gene	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0014	persistent	direct	high	470	0.998	GCA_009295985.1_03630
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3798850	3800232	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	13505	14887	GCA_009295985_1_1_3345	GCA_009295985_1_1_3345	-	4596548	.	.	hypothetical protein	MSFNLPGMYLYYLSRDNLAPEEYERIISPHAAWARICREYEFDDSHNTSRYLINMREREQRSSPDQPRPGGIREKEKLEKLVFSGDVVMLSDMYGPARLFYINGEGQLMSTDPHAFRFEGAAKIIKAFDDSVKCRNYQRTGGKPRSTQTRRLKSTTNTIPDRSMVTRASDESGRVLSAKWQSVTDSAKTLWEATPFTHDKATTEAARGRIADGAVGTLEGLGTLMGPSAQEYMAGAFNPEQAAINKVRQQNQQAAGKAIYDNTKGAVTDAYQRNGLAGAAAMVVTASVAELAGTKGLGTVEKVGTLGDVAKLGKAVELEKLEGYLGTYKGQKVLLQNVDVVKMDYVRRSTADRNLLRKEFDNGVRKKFLKDIANNPEVVKRLDAFDRSVLAKGVVPDGYQVHHKLPLDDSGNNNFDNLVLISTRPEHAAFTTTQKHITKNLTPTGTNIVLWPKPQGIIYP*	.	hypothetical_protein	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0015	persistent	direct	high	1382	0.999	GCA_009295985.1_03631
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3800365	3800595	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	15020	15250	GCA_009295985_1_1_3346	GCA_009295985_1_1_3346	-	4596548	.	.	hypothetical protein	MDTLTTATPSVHRKYFRHILGACGSCYFERQAGKFILGEEGDQFFSAYVREDSAYRIERMESESPLGYQTSGAIPV*	.	hypothetical_protein	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0016	persistent	direct	high	230	0.996	GCA_009295985.1_03632
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	CDS	3801151	3801309	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	15806	15964	GCA_009295985_1_1_3347	GCA_009295985_1_1_3347	+	4596548	.	.	hypothetical protein	MTKKTAHSQITKTQIYRAVASSTAIETGVSVQKIEQQLKQNLAQAKAVGLAR*	.	hypothetical_protein	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_CDS_0017	persistent	direct	high	158	0.994	GCA_009295985.1_03633
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	25601	26362	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	1	762	GCA_009295985_1_4_28	GCA_009295985_1_4_28	+	101698	.	NF012228	MDR efflux pump AcrAB transcriptional activator RobA. The original characterization of RobA as a Right side Origin of replication Binding protein A (robA) may be misleading. Characterizations in large numbers of papers since then treat RobA as a transcriptional activator of the AcrAB antibiotic efflux pump.	MPIGTYIRVRRASRAAALLRLTRLTIIEISAKLFYDSQQTFTREFKKIFGYTPRQYRMIPFWSFKGLLGRREINCEYLQPRICYLKERNIIGQCFNFRDLVFYSGIDSKCRLGKLYDSLKKNTAITVSNRIPFHDKTNDIIARTVVWDRNKHFSDSEIKVDKGLYAYFFFNDTYDQYVHHMYNIYYNSLPIYNLNKRDGYDVEVIKRRNDNTIDCHYFLPIYCDDMEFYNEMQVYHNNIVKPEMSVTLGLPKS*	mmseqs_cdd	nonviral_gene	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0001	shell	direct	high	761	0.999	GCA_009295985.1_04492
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	26877	27182	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	1277	1582	GCA_009295985_1_4_29	GCA_009295985_1_4_29	-	101698	.	.	hypothetical protein	MSNLTSFDWWLATYLVAAGFGYAFYVGQLIVKLLLIRFASHKRIDDGLWRLGSLLETHYGELKENETITIQAKRFTAIITRTPEQKVSLIKKIATERVTDK*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0002	cloud	direct	high	305	0.997	GCA_009295985.1_04493
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	27179	27331	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	1579	1731	GCA_009295985_1_4_30	GCA_009295985_1_4_30	-	101698	.	.	hypothetical protein	MIPYITLSFAGGVALGFSICRDLVRQELKTKTLRIGKRLYRVVHETGVQK*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0003	cloud	direct	high	152	0.993	GCA_009295985.1_04494
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	27328	27543	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	1728	1943	GCA_009295985_1_4_31	GCA_009295985_1_4_31	-	101698	.	.	hypothetical protein	MIMLSKREKETLREISQWKEFYANWKPKTRAKLERMNLVANVSPKGCLENYQLTEKGHSLLQQLTEAGAFQ*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0004	cloud	direct	high	215	0.995	GCA_009295985.1_04495
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	27527	27703	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	1927	2103	GCA_009295985_1_4_32	GCA_009295985_1_4_32	-	101698	.	.	hypothetical protein	MFGWMIVFLVVGIVIGSLVMSSCINDYVKAGVMQRRGRIYRIVDITYTLKEIKDDHVK*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0005	cloud	direct	high	176	0.994	GCA_009295985.1_04496
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	27703	28740	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	2103	3140	GCA_009295985_1_4_33	GCA_009295985_1_4_33	-	101698	.	PDB:2CFM_A	DNA-Ligase	MCADGQDVFRRFLLKDPKAGVGISLCNKVFENPIPKFEVQLASPYKEKGDKYPFKPNPKAKWPMIGSLKLDGLRVICEVIVDEEEVNFLTRTGNPITSLDHLKPAMLERGRLSGFKHIFFDGEGTAGTFNQSVSALRKKNVKAIGAVYHIFDFFLPEWRAQAKSKEYLKTGMKLKERLAMLVSLFRNTCGEDYAQDIHLHPFYIIHSHEDFIERFMKRLDENEEGEMGKDPDSVYEFKRTRSWWKLKDEDSEDGEIIDFEPGDPDSGFAHTLGKIVIRLENGVIVRASGIKHKYLDEIWNNQEKYRGRIVEVHCHEKTPDGSLRHPRLKWPKCLRDTEDRIGDKD*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0006	cloud	direct	high	1037	0.999	GCA_009295985.1_04497
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	28816	29595	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	3216	3995	GCA_009295985_1_4_34	GCA_009295985_1_4_34	-	101698	.	PDB:4M4W_K	Replicative-helicase	MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE*	rep_hall_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0007	persistent	direct	high	779	0.999	GCA_009295985.1_04498
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	29595	30617	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	3995	5017	GCA_009295985_1_4_35	GCA_009295985_1_4_35	-	101698	.	PDB:1BCO_A	Mu-Transposase	MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0008	persistent	direct	high	1022	0.999	GCA_009295985.1_04499
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	30741	32750	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	5141	7150	GCA_009295985_1_4_36	GCA_009295985_1_4_36	-	101698	.	PDB:1VZ0_A	ParB	MSVTDVKAKAPKKASSKKITKAQEEALKAALEAAVIEYVPLSSLAKSPLNVRTIPYSVDSVRGLADSIEALGLLQNLIVHTLADGQSGVAAGGRRLTALNLLAQEDRLAADHTVMVKRVSDDIAALASVAENEQRAAMHPAEQIAGFRTLAEQGKTPAQIGDALGFGSRHVQRMLKLANLAPSLMEKLAQDELTVEQCQALCLEDDPARQVEVFENVKASWSNAPAHLIKRAITETEMRTDNAKFRFIGRDAYEAAGGYVREDLFSQDEGDGTADSVLVERLVQEKLERIAQDIQQREGWAWSRGRAARIWYHGEDGKEFVQPVEPDPVYTPEQQQRLDALREQYDTYDSVCDESDAIEADILAIQEAAEASAWTDDMKSGAGVMVSLYEGQVYVQRGVRLKADMPEETVTSSVTVPFTSRQPDAAEGISVPLLTKMTSERTLAVQAALMQQPEKAVALMVWRMCTCVFSGCLTTTHPFRISLTVSHGSLTENAPSGKDGAAFEMLMTERARLKALLPEGWEKDFTTFFALDGGVLMSLMAFCTACSVDGVQTRDMGHTSRSPLDTVEAAIGFHLRDWWQPTKDNYFGSLKHPQIVASLKEAGLTGAAGDAEKMKKGDAAAHAEHFMQHTRWVPAWLKGPEPAAESGADDAVSDTDSTDNDTTNTAHAA*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0009	shell	direct	high	2009	1.0	GCA_009295985.1_04500
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	32823	33053	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	7223	7453	GCA_009295985_1_4_37	GCA_009295985_1_4_37	-	101698	.	pfam06006	Bacterial protein of unknown function (DUF905). This family consists of several short hypothetical Enterobacteria proteins of unknown function. Structural analysis of the surface features of the protein YvyC has revealed a single cluster of highly conserved residues on the surface. Additionally, these residues fall into two groups which lie within the two largest of the three cavities identified over the surface. The conclusion from this is that these two cavities with, Leu 58, Glu 75, Ile 82, and Glu 83 and Pro 86, conserved, are likely to be important for the molecular function and reflect the cavities found on the surface of the FlaG proteins in pfam03646.	MSEALAVLPDDTFTREQAEVVAAQYTNVAIEDDQGAHFRLVVRQNGEMVWRTWNFEPGGTYWLNRYIADYGIRKPQ*	mmseqs_cdd	nonviral_gene	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0010	shell	direct	high	230	0.996	GCA_009295985.1_04501
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	33766	34272	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	8166	8672	GCA_009295985_1_4_38	GCA_009295985_1_4_38	-	101698	.	COG4734	Antirestriction protein  [Defense mechanisms]. 	MRTTTTTPAVYVGTYHKYNCGSIFGKWFELTEFDGREDFYEACQALHADEWDAEFMFQDQEGIPSQFVSESAIDWDFIAAYKRAEEEGREAAFIAWAEYTGECDYDAFDDAYRGEAESEEDYAQEMVDDNGLLNEVPEPLRSYFDFEAYARDLFSSGYVFHDGYVFGN*	mmseqs_cdd	nonviral_gene	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0011	shell	direct	high	506	0.998	GCA_009295985.1_04502
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	34671	35450	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	9071	9850	GCA_009295985_1_4_39	GCA_009295985_1_4_39	-	101698	.	.	hypothetical protein	MQETTTLNALVMRRARDLIADYGWPDHTDVDQRDPVNKPGWISIYVRLDAANIVHLLPLLCSGDIPAELQNAMTKIAGTSAQIILSGSRYADAPQLPEDGTQIAFPWAGEWLTEPEIQAVTDCLSRAVRDVSRQVWEDARRIKAALTTRGETLFYRQTRNFRLVVKENDMPCWLDDDDNLPVVLDAILNKGARYSSVEFFVISDKVDQILACGQMCDVLRIPGEPPRRWMDLTLLHEVMAEARAEISLVRNALSAIRPV*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0012	shell	direct	high	779	0.999	GCA_009295985.1_04503
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	35504	35923	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	9904	10323	GCA_009295985_1_4_40	GCA_009295985_1_4_40	-	101698	.	pfam07128	Protein of unknown function (DUF1380). This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.	MYGTCETLCRLLREQYPAETPLNLIVWSPADIEALADGMEYAVSEQDTRAVLARMDAIPEEQQLESGVSAGAVMDLIEQVKEAVPAVMVPADLLETLLTTAEQALWHREWTARDSNHPVPESVTRRLADAAKVRALLKK*	mmseqs_cdd	nonviral_gene	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0013	shell	direct	high	419	0.998	GCA_009295985.1_04504
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	35934	36155	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	10334	10555	GCA_009295985_1_4_41	GCA_009295985_1_4_41	-	101698	.	.	hypothetical protein	MNYAGHEKLRAEVAEVANSMCDLRATLNGMEHRYRFDSDVLVERLTRQTLFRINALFMAAYNEMLELDACFKD*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0014	shell	direct	high	221	0.995	GCA_009295985.1_04505
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	36155	36832	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	10555	11232	GCA_009295985_1_4_42	GCA_009295985_1_4_42	-	101698	.	PDB:1G60_B	Adenine-specific-DNA-methyltransferase	MSRFIQGNCVHIMSGFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACHEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAYVGYRHECAYILAKGRPPLPQNPLNDVIAWKYSGNRHHPTEKPVTSLQPLIESFTHPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLEQYHRAGQQRLAAVRRAMQYPAANDEFPEAA*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0015	shell	direct	high	677	0.999	GCA_009295985.1_04506
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	37333	37533	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	11733	11933	GCA_009295985_1_4_43	GCA_009295985_1_4_43	+	101698	.	.	hypothetical protein	MDREMLAEWLRDIARHIEEESPLIRDVSVDDALSEEGLARKIITITFNAPGRAPQPEEDVSSIPRH*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0016	shell	direct	high	200	0.995	GCA_009295985.1_04507
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	37695	39086	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	12095	13486	GCA_009295985_1_4_44	GCA_009295985_1_4_44	-	101698	.	COG1672	Predicted ATPase, archaeal AAA+ ATPase superfamily  [General function prediction only]. 	MAIAGCDLPTFATRLNEVLTLSVPVRTPEKLFGRDKQLETIQLALHSPGRHVFIYGDRGVGKTSLAHTAASLIQSSDNRPITVSCDHDSTLETVIESVISQGMMRMPVDRYKTSATFGLNIPVLKAEARVEERETSRVRSVVNMASAVEALNYLTERYSDNTVIVIDEFDLIRSEEQRARFGVLLKQLSDGDVPVRIIFTGIGQSVSDLIGGHLSSQRQIEQVDLERLHWTGRQRIVESAFRYFDINIPDDIADRICALSDGFPYYVHLMCSKLLHECYMADEVVSTVTRDLFLASLDAAVLSAEETLRSCYEAATCRDEHMHHILWAMAEGADLNRMKDHIITSYIQVMKYLDIEPLTQKNFDSRFARLRKENHGSILCHALVGKDGVRPGWFRFRENMIRGFVRMQAEKCGIVLDFDRQYSAHTASTRTAAVRGVYNPLSTVERSVARLRRDDEKEAEENE*	mmseqs_cdd	nonviral_gene	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0017	shell	direct	high	1391	0.999	GCA_009295985.1_04508
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	39471	40442	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	13871	14842	GCA_009295985_1_4_45	GCA_009295985_1_4_45	-	101698	.	PFAM:PF08775.9	ParB-like-protein	MKQVIARGRVLGNSNSEFARMLEGDGDVKTFTLKSGVQARFVKTVVLSGEVESKTFVDASVNGRDQTMLTRESVSDISRTIKLQQFFPAIGREVNGLIEILDGTRRRAACIFNNVKFEILVTKDDISLADARQLAKDIQTAREHSLRELGKRLEVTYGTSMTKEDIALKENLSPAKVTRAFQAAAVPDEMVAVFPVINDISLSDYQFLLKLAEEANNKQTSVTELMEKVQHRLKTMPDYPAIDKSKILAVIRSESKLLTALPTRTVQTEKLREFSDRNQFARKKTDPKKRLVVYEFSRISAEAQSEIDKAIKRILERLPESGE*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0018	shell	direct	high	971	0.999	GCA_009295985.1_04509
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	40439	41674	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	14839	16074	GCA_009295985_1_4_46	GCA_009295985_1_4_46	-	101698	.	PDB:3EZ9_B	ParA;-dna-binding,-winged-hth-protein	MGRESISGETMKRDYGSVGTIALRASALLQAMSRDIEEQRKEFNLTEYHQTYTRNAVAKLPKLSRRIVELAVKEMEESGYEFNKKQVGNVEQYALTIQNVIDIYAHRQIPKYRDIHKAPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTHSIGTVLETAAQAMLNDLDAETLREAVIRPTIIPGVDVIPASIDDGFVASQWESLVAEHLPGLKPSEVLRKTIIDRIAGDYDFVFIDTGPHLDPFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLERLEEEGVEPRLSASIGFMSKMTSKRDHETSHSLAREVYASNILDSSLPRLDGFERCGESFDTIISANPVSYPGSAEALKKARTEAERFTKAVFDRIEYIRGASK*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0019	shell	direct	high	1235	0.999	GCA_009295985.1_04510
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	41946	42173	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	16346	16573	GCA_009295985_1_4_47	GCA_009295985_1_4_47	+	101698	.	PFAM:PF12910.6	antitoxin-from-a-toxin-antitoxin-system	MKIETISYVKKNAASLDLEEPILVTQNGVPAYVIESYDAQQERQNAIALLKLLTLSEQDKADGNIFSKEQLLAGL*	phrogs_hmm	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0020	shell	direct	high	227	0.996	GCA_009295985.1_04511
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	42173	42499	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	16573	16899	GCA_009295985_1_4_48	GCA_009295985_1_4_48	+	101698	.	PFAM:PF15781.4	RelE-like-toxin	MAIVIQYTRTVKTCIDDIASHLRHIESEPKEVISGIIEHFEKRVSDFPLGCQVCPELLKIGCAKYRECNTPDGYRVLYSVEDNVITAHAILSHRQDIQNLLFKRLIRI*	phrogs_hmm	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0021	shell	direct	high	326	0.997	GCA_009295985.1_04512
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	42699	43319	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	17099	17719	GCA_009295985_1_4_49	GCA_009295985_1_4_49	+	101698	.	PDB:4BQQ_A	Integrase	MLIFGYLRASTSEQDATRAKNALKNFARLHGHRIAGWYVDNISGATMTRPKLVQLLEEAEPGDIILIEQVDRLSRLDDVGWEALRKQITDKQLSIVSLDLPTSHLALNNAVSDEFTRSMLKAVNGMMLDMLAAISRKDYEDRRRRQAEGISKAKAEGKYRGRVADAQKHELIRTLRLLHGKSLRETARLAGVSKMTVIRVCQQAEG*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0022	shell	direct	high	620	0.998	GCA_009295985.1_04513
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	43385	44326	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	17785	18726	GCA_009295985_1_4_50	GCA_009295985_1_4_50	+	101698	.	PFAM:PF04754.11	Putative-transposase,-YhgA-like	MKKKNSTPTPHDATFRQFLTQPEIARDFMELHLPAELRAICDLSTLKLESGSFVEDDLRQYFSDVLYSLDTVEGEGYVHVLIEHQSSPDKHMAFRLIRYAIAAMQRHLEAGHAKLPLVIPVLFYVGKRSPYPYSTRWLDEFDDPELAHKLYSGAFPLVDVTVIPDDDIMEHRSMAALTLLQKHIHQRDIATLTDRLATLLMADYLSSPQVMALIHYLLQAGESADSEAFVRELAQRVPQHGDALMTIAQQLEQKGIEKGRMEGRTEGIQLGEQRGIEKGKLEVARSLLKMGMPIESVQEATGLSEDDLAQIRH*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0023	shell	direct	high	941	0.999	GCA_009295985.1_04514
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	44349	44624	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	18749	19024	GCA_009295985_1_4_51	GCA_009295985_1_4_51	-	101698	.	.	hypothetical protein	MSRRGLRLSQLPPVRSEKPKPAKTSAQLMAEDTLRELIAARFAVGKPVIHIHANWNDALLLRVLKEAIHQAKGPPFVVVPPHLNEHEKEND*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0024	shell	direct	high	275	0.996	GCA_009295985.1_04515
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	45363	45851	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	19763	20251	GCA_009295985_1_4_52	GCA_009295985_1_4_52	+	101698	.	cd09170	Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Catalytic domain of an EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Nuc is an endonuclease cleaving both single- and double-stranded DNA. It is the smallest known member of the phospholipase D (PLD, EC 3.1.4.4) superfamily that includes a diverse group of proteins with various catalytic functions. Most members of this superfamily have two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain and both are required for catalytic activity. However, Nuc only has one copy of the HKD motif per subunit but form a functionally active homodimer (it is most likely also active in solution as a multimeric protein), which has a single active site at the dimer interface containing the HKD motifs from both subunits. Due to the lack of a distinct domain for DNA binding, Nuc cuts DNA non-specifically. It utilizes a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit.	MRFKLSVIIFVLVSASALATPSFNVGFSPSHTALENVLSVVNNAQSSLDVEAYTFTSKQISTAIVSAQKRGVNVRVVADAKANRLNYSAIHYLAQQHVPVRLNNNYSIHHNKVMIADGDTIQTGSMNYTTNGDTHNAENVLVIRGAPEIAGKYQVEFNRLWA*	mmseqs_cdd	nonviral_gene	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0025	shell	direct	high	488	0.998	GCA_009295985.1_04516
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	45929	47692	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	20329	22092	GCA_009295985_1_4_53	GCA_009295985_1_4_53	+	101698	.	cd09151	Putative catalytic domain, repeat 2, of Yersinia pestis murine toxin-like proteins. Putative catalytic domain, repeat 2, of Yersinia pestis murine toxin (Ymt), a plasmid-encoded phospholipase D (PLD, EC 3.1.4.4), and similar proteins. Ymt is important in order for Yersinia pestis to survive and spread. It is toxic to mice and rats but not to other animals. It is not a conventional secreted exotoxin, but a cytoplasmic protein that is released upon bacterial lysis. Ymt may be active as a dimer. The monomeric Ymt consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Ymt has PLD-like activity and has been classified into the PLD superfamily. It hydrolyzes the terminal phosphodiester bond in several phospholipids, with preference for phosphatidylethanolamine (PE) over phosphatidylcholine (PC) and phosphatidylserine (PS). Like other PLD enzymes, Ymt may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. In terms of sequence similarity, Ymt is closely related to Streptomyces PLDs.	MLQIDNVINNIGNYFHHLSNINYIRLLDTPHAWGAPFGKEIMQQSYLRQEEFAGAMTEVLRNSRYRCDISSLNSPDAEWRKVIFKAIDESLSKKMGRTQPTQYRFLFGQSPTVFMNGLSAATNGSPDFVAFKSELIQLIKERGQYWEKMPEIWLGRFFRIEEGLATSFMRNVYPDFPPINDTRMTWNHTKIMASDGTEALVGGHNMNMDLFRNYPPVHDVSIITHGSSAYGSQLYLNELWSCNSDLLKKEYFDYESMMWAVGTKFYDKPEDPLKSSVAMNYMKQRQEDLLNLHENFNQKVATRISEYENMEEYKKADRVLSVGKYWTGPNMEHDYQRGSEIMKEQLIKNAKRIIRISQQDLVSAWKKKWKDHFTCNWIIEALLENKDLHIHVVVSALDAAAGAAGDQYSFGSGAERTYELFKYYLTHDIDTDEVLDDPDGSRADALKRILIAPFFFTDKVPDENTIEGETYKWPDLEQSAYTATLKQKPLSEKPPHQGIIGSALMSAIKGSGLFYPKVPVAPGNHAKLMIIDDELYVVGSDNLYPGYLSEFDYLVEGKDAVNELMKSYWEPLWKYSSPHAFPKLSPN*	mmseqs_cdd	nonviral_gene	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0026	shell	direct	high	1763	0.999	GCA_009295985.1_04517
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	47937	48407	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	22337	22807	GCA_009295985_1_4_54	GCA_009295985_1_4_54	-	101698	.	COG3344	Retron-type reverse transcriptase [Mobilome: prophages, transposons]. 	MIISEMQRKLATWAATDPPRRVERLLRLITQPEWLAEAARITLASKGAHTPGVDGVNKTTLQARLAAELQILRDELLSGCYQPLPARRVYIPKSNGKQRPLGIPTLRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAISSPIVGKHEGAG*	mmseqs_cdd	nonviral_gene	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0027	shell	direct	high	470	0.998	GCA_009295985.1_04518
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	49252	49569	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	23652	23969	GCA_009295985_1_4_55	GCA_009295985_1_4_55	+	101698	.	PFAM:PF04754.11	Putative-transposase,-YhgA-like	MADYLSSPQVMALIHYLLQAGESADSEAFVRELAQRVPQHGDALMTIAQQLEQKGIEKGIEKGIQLGEQKGKLEVGVSLDIENYCTIRASPACQRRYSRFLSALQ*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0028	persistent	direct	high	317	0.997	GCA_009295985.1_04519
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	49768	50790	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	24168	25190	GCA_009295985_1_4_56	GCA_009295985_1_4_56	-	101698	.	PFAM:PF01548.16	Transposase	MTITTVGIDLAKNVFAVHCVDQNGKTVLVKPKVSRAALPELIAGLPPCVIGMEACSGAHYWARLFREYGHEPRLMAAKFVSPYHMAGKSGKNDAADAQAICEAVRRPHMRFVPVKDESQQAMQCLHRTRQGFIEEKTATYNRLRGLISEFGVIAPQSTDALRRMVSEQKNSLPFQVQQCIDDLLEHVDRIEANIADYDRILSRMAKTDHRSQRLMELKGVGPTTACALVASIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRTLLVQGARSVLIGADKRTDSFSRWVCTLVERRGYWRAVVAIAAKNARLCWASLHYGDDFRLYSAS*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0029	shell	direct	high	1022	0.999	GCA_009295985.1_04520
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	51259	52467	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	25659	26867	GCA_009295985_1_4_57	GCA_009295985_1_4_57	-	101698	.	PFAM:PF00872.17	Transposase,-Mutator-family	MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0030	persistent	direct	high	1208	0.999	GCA_009295985.1_04522
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	52501	53223	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	26901	27623	GCA_009295985_1_4_58	GCA_009295985_1_4_58	-	101698	.	PFAM:PF13643.5	DNA-binding-protein	MPEKIFKAPCPTCRGTCNTLVHGEIQKEWSNAVDSFNLSYGQDSHKLLECCGCGTVFYYKDSWGSEHGDNDIYGKFTPTHFIETVPAPEQPKLKPDWLFEIYKKDQILFFILDEVYTAYEHGSFILASTGLRTAFDHSCAHIGIPNAYTMEQKVKDVFVKGYVSETERDQLRIVIEAGNAAAHRGWRPDKSAFESLLHVAEKFIQQVILRDLEIEKIGEKIPKKQKKKGDCKQYCVIACF*	phrogs_hmm	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0031	cloud	direct	high	722	0.999	GCA_009295985.1_04523
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	53476	54270	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	27876	28670	GCA_009295985_1_4_59	GCA_009295985_1_4_59	+	101698	.	.	hypothetical protein	MKADIQKSVTEIIDKSGVEIDTEERQKIIGEAIQTALKHIATSVSTAPLSEGSKYMRVWVRFGESPELPGVKQKRAALVTFTREMKDATVEVRAGAWYDGRVVYTNQAVCDEGERFEDIVDATLRAIKGRAGVEDDPSIAAFLSIVELPEVTERVTDLTTPPGLLELVVSGDTKKAVERIREVEYGIICDMCRSDLDLVRIIVDAGQACDGVLAGFAGQVARLANELPMIKQEAKSYAVHHANDLLEPYRFEAAQDKMTGWATW*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0032	cloud	direct	high	794	0.999	GCA_009295985.1_04524
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	54352	54828	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	28752	29228	GCA_009295985_1_4_60	GCA_009295985_1_4_60	+	101698	.	.	hypothetical protein	MSTRTDLSKIPSISGNNGYSLCCPEVKINGHEAHCSYTVCQHTILAYKEKRLPATSFLSCAAAIAAGKCQALKMMVEEIRKGEQLYFIDMTALIKEVEEQNDHARMLTRKRNTMTINSLVKRTKKTEPAKPKTTSTDSLAPVTDVYAALIEEATKENT*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0033	cloud	direct	moderate	257	0.539	GCA_009295985.1_04525
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	54863	55216	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	29263	29616	GCA_009295985_1_4_61	GCA_009295985_1_4_61	+	101698	.	PFAM:PF04675.13	ATP-dependent-DNA-ligase	MEKLIALKHKLDAIKTMGTNAKKEALANLDEFEQSMVSLMLNPFIRFGVKKYKVAEPLDTSVPSDQKVVELLEKLAARELTGNAAVTAVESLVAVTNGAIVIHTQRLKSDPGGSLLS*	phrogs_hmm	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0034	cloud	direct	high	353	0.997	GCA_009295985.1_04526
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	55230	56252	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	29630	30652	GCA_009295985_1_4_62	GCA_009295985_1_4_62	+	101698	.	PDB:1BCO_A	Mu-Transposase	MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0035	persistent	direct	high	1022	0.999	GCA_009295985.1_04527
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	56252	57031	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	30652	31431	GCA_009295985_1_4_63	GCA_009295985_1_4_63	+	101698	.	PDB:4M4W_K	Replicative-helicase	MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE*	rep_hall_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0036	persistent	direct	high	779	0.999	GCA_009295985.1_04528
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	57165	57773	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	31565	32173	GCA_009295985_1_4_64	GCA_009295985_1_4_64	-	101698	.	PFAM:PF02413.16	tail-fibre-assembly-protein	MTFKMTDKARTLKVYNLLEGTNEYIGVGDAYIPPFTGLPANCTEIEPPTTTEGFAAVFDFTKQEWSLEEDHRGKTLYSTETGEPVFIAELGPLPENVTYISPNGEYQKWDGSAWVKDEEAEKTALVGEAEQNKSVLMKNVSQQISLLQDAIDLDMATDEEKETLVALKKYRVLLNRVDTSLAPDIDWPILGNEEEDSANLIK*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0037	shell	direct	high	608	0.998	GCA_009295985.1_04529
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	57866	58078	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	32266	32478	GCA_009295985_1_4_65	GCA_009295985_1_4_65	-	101698	.	.	hypothetical protein	MIILVFSAPVAEMADACTCEFGYSENVEIIYRSLEASAEFDCIVSATNSLVRWMGARMLNISGKVFTNSL*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0038	shell	direct	high	212	0.995	GCA_009295985.1_04530
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	58075	60963	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	32475	35363	GCA_009295985_1_4_66	GCA_009295985_1_4_66	-	101698	.	PDB:4A0U_B	Tail-fiber	MWYREGTITFTQGSDALSGTGTYWNVTANGVLPGMIVIGPDNKLYEIKRVISDTSLILAEPYTGETQKEVPCRIITTYEGDLTQFSARFTALMTRMSADSKTMRSWLTAVDEVTLEREDGTEVTVKSLTQIVDEHNANQKWYTDNADAINAAGEKAREAAERALAAAQSSSEARAKADEAAQSSASASEYKTAAELSAAASKASEHGAAESAASSKASASAAKTSEDNSAASETNAAESKAAAALSASSSANSASEALQYAESAKTSKEAAAASEAAAANSENEARTSKDTAVAAAAEASANATSADASRHDVDTNKAEVSRMKDEVFAARDSTIQYSEEAKTAADTAAREAATKTSDQLLSAVKSEAEKANSASASAQGFADDAKRFRDEAQEIAEGSKVNDATTSQQGVVQLSSATDSESETLASTPKAVKTVMDAVALKAPIDSPALSGAPTAPTPAITAAGREIATAAFVASKVAQLVGSAPEALDTLNELAAALGNDPNFATTITNMLARKQPLDGTLTALSGRSPQGVIDYLGLLNTVNLAAGSIQKSQNGADIPDKRLFVKNIGAVSSARISFVKESGWYKLATVTMPQGASTALITLIGGAGYNAGLYDQAAISEIVLRSGNWNPVGITATLWQRSPAGAQGVAWINTSGDVYDIYVNVGQYSIDVIALSDCTNNASIVLFGTPEYVATKPASSTNGANYILYSSVLPPPESYPVGAPIPWPNDVAPSGFAIMQGQTFDKSVYPKLAAAYPSGVLPDMRGWMIKGKPTSRAVLSLEQDGIKSHAHNAAASSTDLGTKPTTTFDYGTKTSSGFDYGTKSSNSTGAHAHSLSGSTSSSGAHAHTVTAHTQYPRSTDSRNQNAVGKQYNTQQTTANAFNVWTSSAGDHAHSISGTAVSAGAHAHTVGIGAHAHSLSIGSHSHSVAIGAHSHTITIAACGNAENTVKNIAYNYIVRLA*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0039	shell	direct	high	2888	1.0	GCA_009295985.1_04531
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	61044	61661	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	35444	36061	GCA_009295985_1_4_67	GCA_009295985_1_4_67	-	101698	.	PFAM:PF14301.5	tail-fiber-protein	MDETPVISAVRNAVRSLSGGISCEIQFDGLVMDDGVTPLFLPYTLSESDTSPLAKKILEALESESSGGIAPYPEQGEYIERLKVEKLAVINDWRLRQECRTVYFEWNGHRWDANDISKERLDISLKAAESGLPDNFFWTDADNNDVPVTQEQLKELGMRMTQTLFDRKFGAHERQRVMKKDILEMCDPELIKNYQVGWGDGSARR*	phrogs_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0040	shell	direct	high	617	0.998	GCA_009295985.1_04532
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	61679	66310	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	36079	40710	GCA_009295985_1_4_68	GCA_009295985_1_4_68	-	101698	.	PFAM:PF13550.5	tail-protein	MEQFKKKRLPLLIAGAGGKKSSGSSRTPVEADDTVNSRAMASILDLLGEGVIGGLVDGAKSIFVDDLPILNEDGSSNFSGITWDFRDGSQDQTPMAGFDFVETPKSVNIQLKRMHDVTIAIDNDEADRVRVILKFPSLRSIDKKTGDTNGTTVKYKFQIANGDNAFKDAIAEGESASEIALTAKKTGVYYRSYELKLPKPGRAYKVRVLRLTDDSNTQYIFNDTWVDSIGEIVDTPMNYPNSALVGLKVNSEQFGSSMPSRSYLVRGLKIRVPSNYDEHTNTYIGVWDGTFKLLSSSNPAWILFDLLTNARYGLGQYVSESMIDLGQIYQIGRYCDEEIDNGFGGKEKRFAINTQITSRQDAYRLIQDIAGAFRGMVFWAGGMVNVMQDSPSDPVMMFTNANVKDGMFSYKGSARKDRPSVALVTYNNKEDGYKQNIEYVEDQEAMRRYGERKTEVVAFGCTSRGQAHRVGLWLLYTARMESDVISFTAGLDASFLMPGETVLIQNKYRAGKRNSGRIVAFTKNSITLDAPVTLNKAGSYIRILNQEGEIVERDILETGEDITKVTFSKALNSGDMPVMNGVWTITEPDLEPMRVRVINVAQGEAQGTFNVTVVQNNASKYEAIDNGATLIPENNTVLDPTYSKPTNLQVTEGTYISSPGNLSIKLVATWEGKSAEYWISWRRSDENNVSNWQSARVTEEQFEILNIAENGQYDIQLYAVSFSGKKTDIISTVYQVKGTMTPPGSPTSLTAVGDYRNVILNWVNPDSIDLDHINVYASQTNDLETAKLVAEAASTTFTHAGLGDSETWYYWVRAVNKRGMLSPPNSNLGTEAMTRDVLSFLTGKITSSELGQELLEEIDAKASQDAVDAINKQMEESLKELDQSVADLDSKLEDTSGRLEQVQNDLKNEVSGTLDKVNDALQQVEDSNAALVELQETVSEQGKAIAGAVEAAHAALDNASALIAEEREARVEGDKANAKQIEAMKSSVDDSVAAVEEMKKTVAEVERASAEASTNIEALAKTNIDLALRQDEDQHKQMVNNAKIATTQKTFADDMSAMASKVEEIRAEIGEDIRASILEETTARVEADKTIATHISKLEAQLNDDISAAIVSEQEARATADETLSRQITTLQAKVEGDISAALTEEQIARATADEALSKQITQLKAQNGEDIKAAVAEETQARTDADGALASQISSLKAQTAEDIKAAVDTETKARTDADSALAGQITNLQAQTGKDINAAITSEATARANADGALGKRIDTVKAEVDGNSALIQQQAKAIADTDKKVSAAWTLKMETSTSGGQKYVAGIALGIDSTGLSQFLVQADRFGLVNSVNGKITTPFVIENSVAYMNGAYIKDGTITNAKIGNVIQSNDYAAGSRGWIIPKDGSPEFNNGTFRGNIAANSGTLNNVTIAQNCQILGKLHANQIDGDIVKAYMVNGSSIYIAPQTFARIIYVVNGYYYNKPSEDINTYSWSRITEYTVNGVKQQIYGMREGSKNQSGLFGYYNLPAGQSATVDVYTWHRQRKYDHRVNEPYLILVFKA*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0041	shell	direct	high	4631	1.0	GCA_009295985.1_04533
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	66332	66919	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	40732	41319	GCA_009295985_1_4_69	GCA_009295985_1_4_69	-	101698	.	PFAM:PF06805.11	tail-assembly-protein-I	MSELVHVQLGGPMARHFGRHWHLKVRNTKQALDLVEANRPGLKAWMKRNMKTYDKYHIQITNKQGHKWSVDESEFQMMGQSDNIAKIRITPVPRGSGGKAFGWFQTVVGALVMVASFWFPALAPLGLSLMMGGISQLISPQATNDSVRQADNSNSFYFDGPQNTTNQGNPVQLIYGEEILVGSQVVSSSITIDQL*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0042	shell	direct	high	587	0.998	GCA_009295985.1_04534
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	66907	67704	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	41307	42104	GCA_009295985_1_4_70	GCA_009295985_1_4_70	-	101698	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MGNRAFPELGSDIMQEIYLTAIKRYPNEACGFLVRTTGEKYRFMEARNVSENPENTFVMHADDIIAAEDAGDVVAIWHSHTDESADASDADRAGCEATEVPWLILAVRKNVEGDAPFHFSEMNVITPDGFEMPYLGRPYVFGVFDCWMLCRDYLKREFNVELNPNPHLHIPSWYTGDTDILDQNYRNEGLVRLAPGTEPQRGDVFFIQYGKMPDHCAVYIGDGMILHHQIDRLSCRAYYGGMYQKHTTHHLRHRDLLKGDETCLS*	mmseqs_cdd	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0043	shell	direct	high	797	0.999	GCA_009295985.1_04535
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	67697	68395	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	42097	42795	GCA_009295985_1_4_71	GCA_009295985_1_4_71	-	101698	.	PFAM:PF05100.11	minor-tail-protein-	MGIKADIQSLSPSALIELFELDMSNTTSGGKLFFHAGTNELMEPVVWQGVSYEPWPIKASGFDKTGQGTLPRPKIQVSNFAGTVSAEVQANDYLVGCRIIRKMTLARFLDAANFKDGNPTADPNQHFPDEMWFVEQKTLETHEVVEFELSSVFDLMGVQLPYRQIIKNTCPWKYRGPECGYTGPYFDKNNQQTTMSGADYCTKRYDSCNARRNYFANGVIHFGGFIGATRYG*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0044	shell	direct	high	698	0.999	GCA_009295985.1_04536
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	68485	68820	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	42885	43220	GCA_009295985_1_4_72	GCA_009295985_1_4_72	-	101698	.	PFAM:PF05939.12	minor-tail-protein	MERLTFNWYPDYESEKTVKPNVTVLNFGDDYEQRQAKGLNRIKEEWSLTFTRSYDVINAVDDFLTARAAVESFYWTNPRGKKMVVVCDSHTVKRYQGYLVLTATFRQIYEG*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0045	shell	direct	high	335	0.997	GCA_009295985.1_04537
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	68862	73439	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	43262	47839	GCA_009295985_1_4_73	GCA_009295985_1_4_73	-	101698	.	PFAM:PF09718.9	tail-tape-measure-protein-	MSQNVEFILSLEDKQFTASIDRAGKLLTRFGEQATKPAQKINNLERSLGSVSRIIGVLESKLDVTAEKLQDVAAGFELVSDVSRKTRGSITSLNSGLKTLIERVDTTTSSVNKLTTSLRKVQSELNEFSDWATFAGKSASRFGTEVKEASASVSGMNTRLNTTTKRLSNWGVTTSQAAEGLKKVRDQMDAVIGRQQLISKPVRVRTSSYGDGGGNGGGGRHSGSYGHGGRSAESGVFSGLRGNIFLLGEIGDAARTVTDILFGWQKPIIEAASEMERMRVMLRGLNKDKANPGKAAAEDMQYIVDMAQNAPFAMQALTDSFVKFRSAGLDPTDGSLKALVDSVARFGGDSELLKRAAVAVQQMSGKGVVSMEELRQQLGEAVPNAMKAMADAAGITMGELTKAVSTGTVEAKQALSLMFVGLRAENENAAKDMMQTYTGALAQLQTSFTLFADRVGQAGYLDSLTKGMKELASIMNSAEGISFANSLGSGLSTAIDGLRELAQWLAKNQELVISLGKVVAAMVAFKLMRAGIAGVIGTAGQMVNTFTKMSTVLQAPFNLGATAVTRFNRAARMGLAPIPSLIFAIRGAITGLQGAFAGLTAFIAANPIGAAFTVATVAVAGLITYMTMLRSETSKVVDEIRKIPEAMTAAKRAQMAARAAELEKQIQRDQQALKTGESVNYYSTAAGPVAVKESKEVVEARLKKNQEEYERTTGTMALGDGAVAKRLAKEAAESQIEKIRADNQVFSATFVKARQEALDKIQKINDDKSLSDDEKNKLLAPLREKVNKSYLEPAQKLVYDLSSRKNATEKQIAHFSDMLEKAKKEGNTEQVQKLQGSIRGYQEHLEAVAQELTQAEFERDSAAKTGKGVMSNQGTVLGLGTTDKAAQKALAQYMRNQMDSATYQRTLPDGTAMLDFEGKPIIGPKQLKTQLNLQKASSASSLEKMSDEERAAAIAALTKAREQDAAAAEKAGQRTANASQRAARKEENAQRKLAAGYQKALDKADQLMGQMGESSKATVSFDQSLRDTTKSLTELANAVPNEFITQEMIDKAKSRLADLANASDDYREMFNRRNVEQMISTWAPESDSIISAGYKPSREEKVADFNDTYNRNLKALMDLRDQASDPKIVALYTKQINQLVAAGNTALIKETGTATQKLALEYENLAEQLENSWSNLFSNMTDTLTDFVMKGKLDFSSLAESILRDITNMVVKTQITLPLMNMLGMGTTAAGSSQSGNLLSGVASAVANQGVRMNAVNGDKSVGEATKETSSSVSGLGQTTQQTTSAIGSATNAIGNWVNGLFTSTEAKDAETKAVKTSIFSMQNLSSVTGALSAAFAMLGANMSGSGNKWLSFGATIASGLVSAWAGGGFDNIGSGSSGSNSGFNNLTGSASDGTGGIPAIPKFAKGGIFGKDGVVPLRAYQKGGIADSPQLALFGEGDMNEAYVPLPDGRSIPVTLNAEGVKGGGVFSPVSIEINVNSDGSVSENSNSEGAWSQAAQRMKAIALETIAQEKRPGGSLNPNSQRN*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0046	shell	direct	high	4577	1.0	GCA_009295985.1_04538
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	73447	73716	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	47847	48116	GCA_009295985_1_4_74	GCA_009295985_1_4_74	-	101698	.	.	hypothetical protein	MSPLELLGVPLTMFWMLSRNIDRLRAEEDVRNLQVARAAQADGEGVKAFMEGLQLRIGRPVVTDKVYDPRKDKADPDAKEQLMQIFGRG*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0047	shell	direct	high	269	0.996	GCA_009295985.1_04539
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	73797	74114	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	48197	48514	GCA_009295985_1_4_75	GCA_009295985_1_4_75	-	101698	.	.	hypothetical protein	MTKLLDLDSILPPKKSIKFGGQEYPIVEMTVGLFVSIKQMEGKDLQNMSPVEQVTAYADLVRKVIPSVPDAVLEKLTVPQLQQIFTFAMEVIDEENEKAAGEGAK*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0048	shell	direct	high	317	0.997	GCA_009295985.1_04540
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	74174	74920	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	48574	49320	GCA_009295985_1_4_76	GCA_009295985_1_4_76	-	101698	.	Uniprot:A0A0D5A258_9RHIZ	major-tail-protein	MSNTHVKNIKLGACKVSFGGVDLGYTKGGVQVEVATETLKVTVDQLGQTTISELVQGRNITITAPLAESVLQNMVDLMPGSTLSEEENSVTITSAQGVNLIDVAKELVLTPQDTTDYVLTIPKAATAGNFTMTYQSDDVRVFSVQFTAYPDDDGVLGKMSGPKPVKTVSISPESPEVKAGETVQLTAQITPADAGDKTGVWESDNQEKATVDQTGLVRGVAEGSANISFTSNSGGKKATKAVTVNSAQ*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0049	shell	direct	high	746	0.999	GCA_009295985.1_04541
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	74995	75378	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	49395	49778	GCA_009295985_1_4_77	GCA_009295985_1_4_77	-	101698	.	.	hypothetical protein	MFIEAFASLMQKAKIGTVGTDIFCHYMPANVKSGVLLVTPNTGITIDHELKGFYHDSFTVIVRNATITKTVAKANKIMDMFPVEETVSDGVYFRLVRPMSMPITYPKNEGSLIEAGIPIEFAGYLLN*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0050	shell	direct	high	383	0.997	GCA_009295985.1_04542
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	75380	75853	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	49780	50253	GCA_009295985_1_4_78	GCA_009295985_1_4_78	-	101698	.	PFAM:PF11114.7	type-I-neck-protein	MGLKYDAHHFKRAGDRLNNSQKAFKRYLIRDMEKLARLVERLARAMAPLETGSLESAIFARVVKEGYTGLRIELSVSGAKPREGHPGVEVGDYAEYMELGKYRLGYLSRMKSVTNPPVAGVKPRVGPLFLERAVQISEKQFTQTIAEAARKAGFTRG*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0051	shell	direct	high	473	0.998	GCA_009295985.1_04543
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	75844	76188	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	50244	50588	GCA_009295985_1_4_79	GCA_009295985_1_4_79	-	101698	.	.	hypothetical protein	MNISWQAEIAIYRLGSKNVYGEAQLQFVRKTNVGVVKFEQSNEKSSVRADSSGSRGKANLELFDAVLVIPLEAAVQLDDVLILEGQKLKVSSVHRRWGLRGRPGHLEVGANIWV*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0052	shell	direct	high	344	0.997	GCA_009295985.1_04544
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	76286	77119	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	50686	51519	GCA_009295985_1_4_80	GCA_009295985_1_4_80	-	101698	.	.	hypothetical protein	MAQIDTYRSGEAVSLSFAFNVLDIESATYTVRDGAGAIIVDNEPLDITEGQMSIPVVVSAEHNLLSDKERDLRHVIVKAVASGLTHEERKMYVLLNSFELSIPGQSFATVADAQMQAIDMLNGDTLLADGEGLMRKRLIEATRRVKTLPFSIRKVLRIDFDRYDRPQNMLNVYDIPWGADGAYRHDLIDWEQMTPEKFDEFPDYFKQALMLAVVNEACEIANGNDVAAAREDGILSESIGETTNMYRTGKAANVQVARSTWRLLVSYINNRMIVRRA*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0053	shell	direct	high	833	0.999	GCA_009295985.1_04545
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	77119	77553	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	51519	51953	GCA_009295985_1_4_81	GCA_009295985_1_4_81	-	101698	.	.	hypothetical protein	MKPAKIRLLEPQFLGYTGILCGIQFVDGISVAELRFIDQQRICASMRATTVEGKNVSPSAAYSSRNDLTADDIVETAAPDIVPMKRGTAEVEAKPVQRFTREELESIADCEGIAGLRQIGNQIGVKAKGIVEMIEGILKAQGGE*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0054	shell	direct	high	434	0.998	GCA_009295985.1_04546
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	77597	78259	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	51997	52659	GCA_009295985_1_4_82	GCA_009295985_1_4_82	-	101698	.	UniProt:tr|Q7Y4V5_BPR69	head-outer-capsid-protein-	MPEQKMKITEEAFSDFTGHMCRAGFTNSISNEPLSERQQNHLAACFRAIPFTQSVTITPTAPSVLVGKTVQLSAGITMSKSADSFTWTSDNDRVATVSGTGLVTGVTPGKVKITATDKQTQLSASVEVIVKPVSVESVTVTPDSTSVEKGKSVKLRVDVQPSNATNKKVTWTSKNSDKATVDQNGNVAGVAVGTATIEVVSQDGSHKATATVEVTAAPAA*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0055	shell	direct	high	662	0.998	GCA_009295985.1_04547
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	78334	79209	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	52734	53609	GCA_009295985_1_4_83	GCA_009295985_1_4_83	-	101698	.	PDB:3J4U_G	Major-Capsid-protein	MPLLRDEAEKLSNNELEQGVIETIIDRDDLFAVLPFMKINSKAYLYNREATLSEATFIDVNDTITEGAATFTEHVAKLRILAGDVDVDKFLATTMSDTNNQLAIQVRQKVKGLARAFRRNLILGDSTTNTKAFDGIPKLMHDDQKIDIEGASMTFSMFDELVDAVKDLGADCIMMRSEHLRAYRALLRTVSLGPSEIMMENFGRPMLCHNGVPFIVNDFIPTDAGKASIYCLHLSEENGVTGLYGGENAGIVVENIGTVQNKDATRTRVKWYCSLANKHDKAIAALTNVKI*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0056	shell	direct	high	875	0.999	GCA_009295985.1_04548
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	79236	79607	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	53636	54007	GCA_009295985_1_4_84	GCA_009295985_1_4_84	-	101698	.	PFAM:PF06810.10	minor-structural-protein-	MTVGASFSGSAFLRDKVLMTPAKARVIYGSHFEVGEDGSVVGFDKPAGQKERAVLVDGEGKPLPFESAIERILRADPEADALLRSEAKQGAGSNSKPTHKVNQPKSKSTMDKLTSGLGKIGLK*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0057	shell	direct	high	371	0.997	GCA_009295985.1_04549
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	79681	80136	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	54081	54536	GCA_009295985_1_4_85	GCA_009295985_1_4_85	-	101698	.	PFAM:PF06810.10	minor-structural-protein-	MNLWQMLMARRGLMDAAEAHERGGAGGGAPAGDNEQGNQDPGKQGEQKEQPKGDDDEYAGMTQEELLAELRKSKKAGADLLKENMKRKEKERTLADQLAQYGDIDPARARQLLEAEQAAETARREAEQAELERRGEFDAVKKQMIEAHPPG*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0058	shell	direct	high	455	0.998	GCA_009295985.1_04550
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	80159	81733	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	54559	56133	GCA_009295985_1_4_86	GCA_009295985_1_4_86	-	101698	.	PDB:7Z4W_L	Portal-Protein	MELTDKQIKDLVARRHPEYEKKKEHWDFLASTYAGGRAWFNDNIFRYFKEGDQEFKERLERAYRFNHTREVVNLINKYLFKEVIHRNTDEAPEQIRNFWKRATRQNASIDAFMAAIDLQSSIYGRIWVVVDSTMNVDLESVADEKKNDARAYAYWISPQQLLDVAWDEDGNMLWALIVEIARDDEDPFTSTGQEYQRYRLWTQNEWYLFREEVKKGSGNSGRRQAKVVLEDSGEHNLGVVPVFPVDCIGESESPYFSPSLIDDIAYLDRAVANYLSNLDAIIQDQTFSQLAIPVQSLLPGDENHTKVLEMGTKRVFTFDSESGNQPFYLSPDPKQAQMIITTIKTVINEIYHSVGVAGERTKQDNAQGIDNSSGAAKMYDFQRVNSLLVTKAERLERAERQMMQLAAKWMGVELDEDHSLIAYPESFDIRGLTDEFAVAEKLSLLQAPDSVRRHQMEMLIEKVFPNISEAMQKEFQKDLLKFPPKNDLNTLENKSVLTYDRDISQESGQDQPRGNGDSSTQETE*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0059	shell	direct	high	1574	0.999	GCA_009295985.1_04551
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	81767	83023	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	56167	57423	GCA_009295985_1_4_87	GCA_009295985_1_4_87	-	101698	.	PDB:5OE8_A	Large-Terminase	MAIPSSLSLVQLHSGQMQVFQSPHRFKVVCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQMARQILWDDLQEVLPRKWVRKKNDTTMTIVLKNGSEIALKGADKPDTLRGVALHFVVLDEFQDMKPDTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDMDPKSFAQEYLASFENMSGRVYYPFDRNVHVKPLQFNPKLPIWVGQDFNIDPMSSVILQPQPNGELWAVDEVVLFSSNTAEVCDELERRFWRWKSQVTIFPDPAGAYRQHARGESDVDIFKEKGFLRVDYPKKHPPIADRVNAVNRMLMSASGETRLYIDPKCKHLIDSLEKVIYKPGSRDMDKTGGIEHSADALGYPVHRRYPVKNRVILGGSR*	hallmark_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0060	shell	direct	high	1256	0.999	GCA_009295985.1_04552
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	83026	83667	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	57426	58067	GCA_009295985_1_4_88	GCA_009295985_1_4_88	-	101698	.	PFAM:PF09607.9	DNA-binding-domain	MTVEKDESKTRLTPAEWAEAEAKWTSGEYTLSKLEEEYGIRRETLSRHFKKRGLEKGADSVGKMVRESLKSDAELRAKARAEKIEERRTRYDDWAFALGRMVMHEVATAKKDGKPLATIEDDLKSLQRASGTLAKCFEVSSKALGMDRAENEDDEIPNLVFGELTPSQVAQLRKEDDEPDLIDDDLLESLEEEALSEAEGDSDASGDESDGSV*	phrogs_hmm	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0061	shell	direct	high	641	0.998	GCA_009295985.1_04553
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	83863	84129	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	58263	58529	GCA_009295985_1_4_89	GCA_009295985_1_4_89	-	101698	.	PF03551.14	Transcriptional regulator PadR-like family	MTLTDKQKDIIKTINLGHERGHLLDLDELLEVLPYKTTKQSMQFSIRALVKKGLVEKGMCRQRGDSGYHRRTLGLTTLGRARAKLLVM*	hhsuite_tools	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0062	shell	direct	high	266	0.996	GCA_009295985.1_04554
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	84139	85029	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	58539	59429	GCA_009295985_1_4_90	GCA_009295985_1_4_90	-	101698	.	PFAM:PF12568.7	ABC-transporter-ATP-binding-subunit	MTDIIIKRYRPEEFPRHLDFLERMTVTKGTVEDWHALKSLHYKTDGKPFAPTYYRCELDDRLVGVVVMAYPKLLLAPRHRMFPKLKPTTNTTVANQYWGRYVNNNFAVISRSVVDTQYRGVGVSYRMINLVSRMHDRPIIEIQSSMSKYNPFAMKAGFQFIRPERPKSYESALRVFQRHFRSDPGDNEAIVKELFAMSESRRRRALRDLVADYHKNSSLAKAGRNRGTTIQDIADSLVDEASIVKLLKDIHNLSFTSPLYGVYRNPDFGRQLPDTLPLLAFDKQPLNKPLEIALPA*	phrogs_hmm	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0063	shell	direct	high	890	0.999	GCA_009295985.1_04555
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	85035	85289	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	59435	59689	GCA_009295985_1_4_91	GCA_009295985_1_4_91	-	101698	.	.	hypothetical protein	MPDLKIVELKPSKEADNNNVEVIRLLEEALQHAREGKSQSLALLMINNDGSVLDCWHNGGRPYVMVGAMESLRLDFINANIERR*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0064	shell	direct	high	254	0.996	GCA_009295985.1_04556
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	85282	85920	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	59682	60320	GCA_009295985_1_4_92	GCA_009295985_1_4_92	-	101698	.	COG2401	ABC-type ATPase fused to a predicted acetyltransferase domain  [General function prediction only]. 	MSKYTINVSFQTRVNKTMRTLEIAESFGLGLDEKEWTLYDNLELEVKQGDVVYITGQSGSGKSVVLRELQRQMKDEGLSVASIDDFTFNNEVNVIDQLGKTTSDALGLLSMAGLNDAYLFVRKPSEMSDGQKYRLKIAKLIESGAKVWAADEFGAVLDRVTAQVVASNLQRAARKVGATVMVATTHEDLKNALRPDMQITKHYKERVKVEYA*	mmseqs_cdd	nonviral_gene	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0065	shell	direct	high	638	0.998	GCA_009295985.1_04557
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	85917	86585	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	60317	60985	GCA_009295985_1_4_93	GCA_009295985_1_4_93	-	101698	.	CDD:cd16403	ParB-like-protein	MTKNFEIVYRNPAELIPYEMNAKKHDEQQIRDLAAAIKKRGFDQPITVDKHDVIITGHGRREAALLAGLERVPVIVRDDLSEEEVKAKRLEDNRLASIDYDAIKLQQELESLVLGDVEVFGFEERELNVLVGSMTEEMETGALVLDLGEETERQKEEHTEISREVAAEEVRVIDVLGFKTLPAGSAIVVGDLLAHMEEITGECGVDAFVAYAEKVSSGELAA*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0066	shell	direct	high	668	0.999	GCA_009295985.1_04558
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	86585	87265	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	60985	61665	GCA_009295985_1_4_94	GCA_009295985_1_4_94	-	101698	.	CDD:cd16403	ParB-like-protein	MDVKITILQVEVANLRPNPWNTNSVGAQNFEKLKGSIEKLGFFKPILARELDGGIFEILGGEHRWRAAMEQGISTVPVISVGKINDLVAKQMSLVDNERYGEDDQVALQRLIEEIQSEIDYRLSDIAPYDDEMAATLAKASVIDLEALEALSRGDDEPIEEDKREKTERVGAEHQTMRFKVTFDASDRVADTIKTIIKEQGINTGNEMENAGEALVWLVDYYKERM*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0067	shell	direct	high	680	0.999	GCA_009295985.1_04559
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	87348	88907	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	61748	63307	GCA_009295985_1_4_95	GCA_009295985_1_4_95	+	101698	.	PDB:1RIF_B	DNA-helicase	MTVRIVSNAVNALISGADDNVKRLVQEMLSYEVEAGDWKGTSTMFNWSKNAFPAGFAKPVAANLLKAGIKCVHVRKEKAPALGKPNPVVNPFPYNPDYAYQDQTVETLVREGMMIAQIATGGGKSNVACKAAARIGRMTLFLTTRSVLMFQMAENFQKSIDYRAENGEPWLKGQKVGVIGSGEFQVSRHINVATVQTLASFLEEPPRDASPEKKRYHLKRRELVKRFLSSVSLLILEEAHESSGSNFYDIARLCINADYRLALTATPFMKDSTEANMRLMAVAGRIEIKVTEKYLIDRGILAKPYFLYHKIAYTPDEVRIRAELASKHLNFRVGMSTAYQKAYQLGIVYNLGRNEAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYGESNQTTRQAKLSSLAAGRIDVLIGSTILDVGVDVPSVGAVILGGGGKAEVEMRQRVGRGLRAKKNQANVCFITDFIDVSNKYLMSHSYERKHIIDTTPGFAEGVLPVGSTFDFTVLNRE*	rep_hall_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0068	shell	direct	high	1559	0.999	GCA_009295985.1_04560
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	88910	89188	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	63310	63588	GCA_009295985_1_4_96	GCA_009295985_1_4_96	+	101698	.	.	hypothetical protein	MSEKRAIHCQVQLTEKANDKLETFQNRLRERNIKLSKADVINLVLSNMTMADFDKAATSLEASAKAREKVMKIYESSGMTKEDLADILKRLD*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0069	shell	direct	high	278	0.996	GCA_009295985.1_04561
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	89413	89670	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	63813	64070	GCA_009295985_1_4_97	GCA_009295985_1_4_97	+	101698	.	PFAM:PF11008.7	lipoprotein	MIGAGCDASIFINGETVAKLETGEKATFHLDAGQWIVGASLEGAGLCALNPARQERETITKAGETKVFRVFTSNAGDIDILPTTL*	phrogs_hmm	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0070	shell	direct	high	257	0.996	GCA_009295985.1_04562
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	89675	90202	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	64075	64602	GCA_009295985_1_4_98	GCA_009295985_1_4_98	+	101698	.	pfam03614	Repressor of phase-1 flagellin. 	MTNKTDITYGIPAEVWPRDYSNVEKALMFWRKSLIPVRVTMEDGQVFCMYVQGLMSSRNKVDLCPAPFDKENRIRLPLERISTIESGVTEGIAHDFTGRTTVHPDYVDNRPSRRDFFKICRQAHEMQKSIRVYMADGREIEGGSSGVDACQATLNMGDGRKTVVMFDWVERILPF*	mmseqs_cdd	nonviral_gene	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0071	shell	direct	high	527	0.998	GCA_009295985.1_04563
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	90525	91175	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	64925	65575	GCA_009295985_1_4_99	GCA_009295985_1_4_99	+	101698	.	.	hypothetical protein	MSNVAISKKSIIDAAVVIANELQVAANNATQTYNNHYQNGTHTKADKANMLAATTKLAYFTNNVLNAVNDEKLAGVFYYAIKASKQAPEAFFREAMTNSYSLEKLVYLVKSIKSGKCVYSVADMSGSRVFALIEMINDELETFTNGAVFDLMNEAKKANEIKLDAGYTQANQLINLCERLGLVEKIKGMGAAKNGSQQYRFIKNDFYNYLADAFKA*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0072	shell	direct	high	650	0.998	GCA_009295985.1_04564
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	91260	91487	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	65660	65887	GCA_009295985_1_4_100	GCA_009295985_1_4_100	+	101698	.	.	hypothetical protein	MVIFIAGVNIHNHTLVYDIAGLAGYALSSEVVDETTFKIDLNSAEHRKRAGIKESDVLLMIQEFLNAGFKIHLEK*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0073	shell	direct	high	227	0.996	GCA_009295985.1_04565
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	92126	92608	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	66526	67008	GCA_009295985_1_4_101	GCA_009295985_1_4_101	-	101698	.	.	hypothetical protein	MNFIATVNTPSHGHISVTFSDNDKSVLGAWRDNVTIELSGKEKQQITNDIICNRRHKRVFEKAYVSTSGFGVFIFPVRSGRFCRSKLIEFATQIALWVKTESGFDFTEQEAVGEGMRIANNAIKCKNVIYEAGIDSWSISCGDYVKEVYGKNRIHILAGK*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0074	shell	direct	high	482	0.998	GCA_009295985.1_04566
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	92621	92797	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	67021	67197	GCA_009295985_1_4_102	GCA_009295985_1_4_102	-	101698	.	.	hypothetical protein	MLVALNGHPVSRRLKTPTSYRQATEQPSDSLQATICRNRTLGRLMRVAIIKPTRKQIV*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0075	shell	direct	high	176	0.994	GCA_009295985.1_04567
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	92814	93095	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	67214	67495	GCA_009295985_1_4_103	GCA_009295985_1_4_103	-	101698	.	.	hypothetical protein	MTDFTISPKAENVWLESWLDLSSEEKREMDHIEQDEQCDARFFHFEGSVYDIADFMRDDRFPGWHAGYPLNAFAMLMIRVDGSGDTIDVGLLH*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0076	shell	direct	high	281	0.996	GCA_009295985.1_04568
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	93295	93753	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	67695	68153	GCA_009295985_1_4_104	GCA_009295985_1_4_104	-	101698	.	PDB:2XO6_A	TN-transposase	MRDEKSLAHTRWNCKYHIVFAPKYRRQVFYREKRRAIGSILRKLCEWKNVNILEAEYCVDHIHMLLEIPPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTARIQEYIKHQLEEDKMGEQLSIPYPGSPFTGRK*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0077	persistent	direct	high	458	0.998	GCA_009295985.1_04569
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	93962	94531	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	68362	68931	GCA_009295985_1_4_105	GCA_009295985_1_4_105	-	101698	.	PFAM:PF02075.16	RuvC-like-Holliday-junction-resolvase	MSKTIRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETKAGGNKKTVRVNSDDLRRANEIWRTAKPIIEQAHMVFCELPVGSQSSRAQTSYGICIGVLACVDKPLIQVTPNEIKHYVGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNEHLADAVASIYTGMQTDQFRQVRDVLAGIL*	phrogs_hmm	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0078	shell	direct	high	569	0.998	GCA_009295985.1_04571
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	94544	95290	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	68944	69690	GCA_009295985_1_4_106	GCA_009295985_1_4_106	-	101698	.	.	hypothetical protein	MSFNLSRTQFLQMFAVMQSIKLINHHTAKAAAPALLWKNENINDDQFSVLTSLLSSTPLMPSLAMLPSGSTAPILVNPFTEGGYLPHSGPGFVAIPETGTLNIQENALFNAMETHISTAFTNLIRHANARADHVAMPGAAFASVSVDYDRHAPISKRAKLCFYEEGCEVAVIEVLLPHVFSANEKVAHHLIDIMRHFIGQSMIDADIAAGVLTNDSIHVVSDIPKPPTREPEKTLEQKLMECPTWATW*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0079	shell	direct	high	746	0.999	GCA_009295985.1_04572
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	95280	97196	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	69680	71596	GCA_009295985_1_4_107	GCA_009295985_1_4_107	-	101698	.	PDB:4UX3_A	Chromosome-Mainenance-protein	MKFLKLQVENFMALASAEVELDQRGLVLIQGVNSGDSSAASNGAGKSTLMNSLMWCLYGETAHGVKGDDVLSTGHEKNCRVMVTVEDEGKRYAIIRHRKHKEFKNRLIVRGEDGDMTKGKDTLTQEFVERLIGASKEVFMASIYASQEAMPDLPGMSDKNLKTIVEEAAGVDRLTRAYAIARERANAAAARMDVTKSKMDACLTLIETAQSEIEAAKASSDSWERDRGERLDKARVDLAGAEVTLSEVVMEIRSLPEQIRDTENAIAGERCKLASKEEHDAKLLKVRGAITEIRSSIRTSEAAQNESMNRARSFKTKAEEVSTKVGAPCVTCGKPYCEEDLSTVKESFIEQARNEIGQAQASASAVAQHKARLEKALGIESALVAATPDVSEIIAKIERLTNELSALRHREREVVAVEAMVARARTDVNRIMAEVNPFLAVIKRHEDNLAANKSNHAVLKNELKSIQEQALLLEKARQVYSPAGVRSHILTSVTPFLNIRTAEYLNTLSDGNIVAEWSTMETTKKGEYRDKFNISVTKTGSSKSFQTLSGGEKRKVRIACSLALQDLVASRASKNIELFIGDEIDDALDTAGLERLMGILEAKARERGTVMIISHKEMKSWFRETITVEVKEGRSYVV*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0080	shell	direct	high	1916	0.999	GCA_009295985.1_04573
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	97426	98511	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	71826	72911	GCA_009295985_1_4_108	GCA_009295985_1_4_108	-	101698	.	PDB:3THO_B	Probable-DNA-double-strand-break-repair	MTLPYGVISDPHYHRWDAFATTNADGLNSRLEIQLDATKEAAKAMKAAGCKHMLVAGDTFHVRGAISPSVLHFVTETYEWIIKELGLEVVMLAGNHDLETNDSVYSANAAASLRSIGVEIVCGKRPHSIKIGDVTVHLISWRNNHAELISDLKTLRSGLDGDNHDVVVHTSINKAIPTMPDVGIDAQELKDIGFRLLLSGHYHNHKEVLPGVVSIGALTHQNWGDVGSLAGFMIVNPDGTFTHHETSAPKFVNLEDDVEDDQIRGNYVRFRAVVENDEEGIKLQNVLKTMGAKGVVCNFIRKASMMEGSASTAETSKIDSLGESVAAYCKIVHDTDGGFDLSKLDMLCQEILTEAESAEAV*	common_virus_hmm	common_virus	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0081	shell	direct	high	1085	0.999	GCA_009295985.1_04575
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	98927	99949	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	73327	74349	GCA_009295985_1_4_109	GCA_009295985_1_4_109	+	101698	.	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [Inorganic ion transport and metabolism]. 	MFRCLALTVSLAFILPGALHAADTRESSSSIRDINVITFQGGWNLPVWVAQEKGFFRKNGLNVKMDYTPNSGQLVRNLLNGKYNIAVAGIDNVIAYQEGQVKEPVVNPDMFAFYGVDNGLLSLVANPQIKNISDLKGKQVSVDALTTGYAFVIRNYLEKNGLTQNDVHYTSVGSTNDRFNALLAGKTDATLLRTPLNLQAKENGFKILASGSELGDYQGTTGITTRSWAAQNGDILVSYIRSYIDGLNWIYDPRNQKEAEEILVKKAPGMTAELAGPALQELLNNGLQRDAAINAEGVKNVLLLRSRLAKPEKNLTDTHKYYDTSYYQKAVGLNKQETGK*	mmseqs_cdd	nonviral_gene	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0082	shell	direct	high	1022	0.999	GCA_009295985.1_04576
GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote	cenote	CDS	100309	100953	GCA_009295985.1	CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985.1_CP045159.1	GCA_009295985.1|CP045159.1	GCA_009295985_1_4	GCA_009295985_1_4@C2	74709	75353	GCA_009295985_1_4_110	GCA_009295985_1_4_110	-	101698	.	.	hypothetical protein	MDLKRTRWVRRLEDGSYTIESNTILNKQKLLCDLCGIASKCPINETRLKLYDAGAHFHLNSCIRYVPLLAFRKPIIGLDAPYFNTLRSGVTWRDRVEPGKLVCLVEADTGNIIRFGRVDKVYSGPVDEMLRKHSRFNHLCMGGEKIDKVGEVIRKSYGHFLNDDSLLTAIYIRHVDREFDTEYHSAEELNLVDPRPKAGVIDISVARQKPSETF*	.	hypothetical_protein	C2	76098	25601	101699	GCA_009295985.1|CP045159.1@region_25602_101699@tool_cenote_CDS_0083	shell	direct	high	644	0.998	GCA_009295985.1_04578
GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote	cenote	tRNA	3065508	3065584	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C196	7570	7646	tRNA-Pro	tRNA-Pro	+	4596548	.	tRNAscan-SE score: 67.5	Pro	NA	tRNAscan-SE	.	C196	29575	3057939	3087514	GCA_009295985.1|CP045158.1@region_3057940_3087514@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote	cenote	tRNA	3794985	3795061	GCA_009295985.1	CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985.1_CP045158.1	GCA_009295985.1|CP045158.1	GCA_009295985_1_1	GCA_009295985_1_1@C242	9640	9716	tRNA-Met	tRNA-Met	+	4596548	.	tRNAscan-SE score: 77.0	Met	NA	tRNAscan-SE	.	C242	15964	3785346	3801310	GCA_009295985.1|CP045158.1@region_3785347_3801310@tool_cenote_tRNA_0001	.	.	.	.	.	.