core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	117764	118150	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	1	387	GCA_009378105_1_24_103	GCA_009378105_1_24_103	+	133089	.	.	hypothetical protein	MFGIKLLHSDDFIKSASSFGCFLAIMDKQTNKNHVYNLSTQVQRFELIDIDQVANLANSVQNGAISATVGTLLVGAGVLPALVALSIGAGLPNRTKDAYVCHIEFDDSKSAILQLSKHKYQQFLKHIA*	.	hypothetical_protein	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0001	shell	direct	high	386	0.997	GCA_009378105.1_01720
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	118508	119347	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	745	1584	GCA_009378105_1_24_104	GCA_009378105_1_24_104	-	133089	.	PF14337.6	Domain of unknown function (DUF4393)	MTAETFHLIPAITGAVSGAASVGLLNGPLQTLQDIWFVVYGHKWHYKVESIKAQQAMNIQAMQNNIQTGIEKIPANALKDPNVAIIGPALEASRFHMNEENIREMFANLIVSAMDERKDGQMHHAFVEIIKSLSPLDAKNLKYLNQDSAKNISPIANIIRQESNSYHMLYQHVFLGNPEVSDQDLIAPSIDNLSRLKLIDITYNDYLTDDSEYESFYHSAPYQEMTSALDKEHEALNLDISILQNPDLKIEFEGKILNKDERTEQIELINKELESKIEI*	hhsuite_tools	nonviral_gene	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0002	shell	direct	high	839	0.999	GCA_009378105.1_01721
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	119399	120049	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	1636	2286	GCA_009378105_1_24_105	GCA_009378105_1_24_105	-	133089	.	PDB:2FJR_A	Repressor-protein-CI	MPSERAKADQFPKMIRRYSKGQAKPRNDKMKLLTQCLGVPITWLDYGEGEMTKNNDKLTPITEWDDSTPLDDDEAEIPFYKDIAFACGHGAVNDEVTHETRKLRMGKRTLSNLGVMPENAFAVTARDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVLGWVWSVSRLERW*	common_virus_hmm	common_virus	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0003	shell	direct	high	650	0.998	GCA_009378105.1_01722
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	120252	120620	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	2489	2857	GCA_009378105_1_24_106	GCA_009378105_1_24_106	+	133089	.	.	hypothetical protein	MNEFIIPNSNSVSNDFNYSRTDLDAQEQQIAEFIKKGGKVINLDNSEQPKKKSAKKRDFNNQRINSKMHLVLCYLKRSGKRMTGLQIQEKFGISATTLGSQTRLLNAQASKQYNQNSNPSRK*	.	hypothetical_protein	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0004	shell	direct	high	368	0.997	GCA_009378105.1_01723
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	120923	121882	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	3160	4119	GCA_009378105_1_24_107	GCA_009378105_1_24_107	+	133089	.	PFAM:PF06152.10	minor-capsid-protein	MKHLINLERFKVHLANKFKTTLNEIDEFLQLVVFRHEISELNYKEFELLIGESKQKLLGFLAGYALELTQDWQELYDYSYTLETKMVDDDKPDTLNMNEPQFDADSPIKLSAQVGVTLNQILAKFGDEQSTQISNAISYAYSNGLTNQELIQIIRGTRKNRYQDGILQTTTRHAKTIAHTGTAIVASQAKQQFIHDNKDIIKGIKILATLDLRTSSICRGLDGVFMPLDKARYPPYHFNCRSSFEIVYDGYQTPKQRASMDGVVKNQTYYEWLKNQPKAYQVEVLGKKKAKLFQESSVDAFKEFDKNLRPMTLDEIKAQ*	hallmark_hmm	common_virus	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0005	shell	direct	high	959	0.999	GCA_009378105.1_01724
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	121957	122691	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	4194	4928	GCA_009378105_1_24_108	GCA_009378105_1_24_108	+	133089	.	PFAM:PF06810.10	minor-structural-protein-	MQLKTDENGNVVVQDGKPVYMYDDGQEIAFDAMQNMAKISQLNAEAKQHREAKEKAETLLKAFDGLNADDAKKALETVKNLDDKRLIDAGEVEKVKAEAKKAFDEQLAEKDAQINKIKQEYNNAVIGGAFARSSFIKDKTLLPSDIVQSSFGSHFTMENGKIVANLGGNPIYSRKNPGELADFDEALEIIISQYPHKDSILRGSGASGAGATQAGVGKNTPKSLADCKTDEERVAWLNEQNNGE*	hallmark_hmm	common_virus	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0006	shell	direct	high	734	0.999	GCA_009378105.1_01725
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	122694	123647	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	4931	5884	GCA_009378105_1_24_109	GCA_009378105_1_24_109	+	133089	.	PDB:4AN5_F	Major-Capsid-protein	MAFDLVKFNQETHLVMTETIAQQVDKFNAQSNSTIQLIAKPFKGDFDVASSFKAIANLVRHRDVENGQNNISSARLTQHKNVAVKIAAGTPEILWEAAQYNWTMQNPQLAAIKIGEQLGRATIADMLNTAIKCGVSAIKGNTALVEGDGTTALDFASLTKGASRFGDRSQAIGAWVMHSGALTNLQLKALGNNERLFTYENVSVLRDPQGRLFIVTDCPDLVDESTKHNILGLTEGGLIVHNQNDFNSVIVPKTGTENITNAYQAEWSYGASVKGYTWDMTAGGANPNAGALATPTNWKKTASSDKDTAGVLVVAKA*	hallmark_hmm	common_virus	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0007	shell	direct	high	953	0.999	GCA_009378105.1_01726
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	123657	123899	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	5894	6136	GCA_009378105_1_24_110	GCA_009378105_1_24_110	+	133089	.	PFAM:PF10281.8	Arc-like-repressor	MERILYFTDDFSQENQAYAKQHGLIIRNAKAYGAVDYLEQCDKVCGQVPIAYEHLPRFELDDNVSDDDTKPKRTRKPKEE*	phrogs_hmm	hypothetical_protein	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0008	shell	direct	high	242	0.996	GCA_009378105.1_01727
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	123956	124306	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	6193	6543	GCA_009378105_1_24_111	GCA_009378105_1_24_111	+	133089	.	CDD:cd08053	Head-Tail-Connector-Protein	MLDDLPIDTPDKERVLMVVNAYLINKGVKFVGDVPEPIKQAGLELAHAFMNGELLAGRTEGVVTSKSSKAGDVSVSKTYADGADGQAMGQHEMIALALMQPYIKKSYGVNALVGRL*	hallmark_hmm	common_virus	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0009	shell	direct	high	350	0.997	GCA_009378105.1_01728
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	124303	124662	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	6540	6899	GCA_009378105_1_24_112	GCA_009378105_1_24_112	+	133089	.	PFAM:PF12206.7	head-closure-Hc1	MKQEITADIANAFDTDLKDTVKDFTAKRIILSDDDWAVNDTQVLSTINYSGRGVFTGFYAHEIDNKTIMQQDTKLICLQSELTDRPQMNDSINQMKVMNISQDPAGICYFIQLRGTNGD*	phrogs_hmm	hypothetical_protein	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0010	persistent	direct	high	359	0.997	GCA_009378105.1_01729
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	124652	124999	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	6889	7236	GCA_009378105_1_24_113	GCA_009378105_1_24_113	+	133089	.	PFAM:PF04883.11	tail-component	MGIKWHKKITVEPIADKIDATYRKFAIDCYNNVIALSPVRKGRYKNAHHISIGSPSYAETGGGIELVLGLPKHTYPLIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSAIANLG*	hallmark_hmm	common_virus	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0011	persistent	direct	high	347	0.997	GCA_009378105.1_01730
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	124996	125196	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	7233	7433	GCA_009378105_1_24_114	GCA_009378105_1_24_114	-	133089	.	PFAM:PF16777.4	transcriptional-regulator	MPKITSTPKTQTQIQKDSNARRGVKNKAFTLKLDDIELIKSLSKRLNIPQNQLIMDAVRAYQRQLD*	phrogs_hmm	hypothetical_protein	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0012	shell	direct	high	200	0.995	GCA_009378105.1_01731
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	125547	126050	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	7784	8287	GCA_009378105_1_24_115	GCA_009378105_1_24_115	+	133089	.	COG3600	Uncharacterized phage-associated protein  [Mobilome: prophages, transposons]. 	MIKAPYNPMDVANYIVAEAIKREKPVTHLKLQKLLYYVVAKYAKTYNTILINEDIVKWQYGPVVKSVYHYFKLHGDRIITKPIAYLESAEIFNLKFTDVDVNNAQLGNDKRLVDTVGQVLNDTDLLTAYELVERTHKEPAWRNFEPEILQAKQELSYSMTELKVANI*	mmseqs_cdd	nonviral_gene	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0013	shell	direct	high	503	0.998	GCA_009378105.1_01732
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	126047	126928	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	8284	9165	GCA_009378105_1_24_116	GCA_009378105_1_24_116	+	133089	.	.	hypothetical protein	MMIQVSGDNAFIRAIIERYLQVQDTSPDKLDDLANEIVWLILKAFDNELRSSDAFNLPYKDITDSVFDSEKRLLTGSLTTFGKNMETAIHHSFDEDRPNKHHEKKEKYVKRFMYIHGKFVEHILLAQVQKEFIQDAVRQAQETAKKAEAAAESAEEIAKIAKNNADKAEKTYNTMFANYVTILGIFTAIIVTIFGGLNVVDTVISYGNTHFSTIIFLAALVLMCVVCLLYFLAKIILKLNGKDDDNQRFTLECLFGAIFITCIGLIVFAWCVSPTKITPELDKTTDKIEQKSD*	.	hypothetical_protein	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0014	shell	direct	high	878	0.995	GCA_009378105.1_01733
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	126996	127379	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	9233	9616	GCA_009378105_1_24_117	GCA_009378105_1_24_117	+	133089	.	PDB:2L25_A	tail-completion-protein	MNSFHIEQTLLTHIKSWEHFDDIPLAKENRNFKPPDGIWGRVTILGGVNQVRSISNTPNILQQGTLVIQLFCPQDLGTVAIKQKADSLANHLQTRRFGRLETLTASIINAGFHDYYQINVSVAWRYY*	hallmark_hmm	common_virus	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0015	shell	direct	high	383	0.997	GCA_009378105.1_01734
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	127379	127567	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	9616	9804	GCA_009378105_1_24_118	GCA_009378105_1_24_118	+	133089	.	.	hypothetical protein	MPKNRHRRLLQLYGEINELGAILDAPKPKDIHPHEWILMKDQLYYMRQYYRVLKQRTDDTEN*	.	hypothetical_protein	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0016	shell	direct	high	188	0.995	GCA_009378105.1_01735
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	127571	128479	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	9808	10716	GCA_009378105_1_24_119	GCA_009378105_1_24_119	+	133089	.	PDB:5NGJ_B	Tail-tube-protein	MSSGAFVKTAYAKQTGETLPKTGWKTLPNISNGLTVATELTNSEMLSGSRMAKAGMVTSASVQGDIETELMFGAYDELLAAAFWSEWSAGASPNTLSVGATKHQFAIAKDFSDINVNHVFTGCVVSSFGLSVDTSSLIKLKFGMTGLGYQESKTTSFAKTPTAQADTAKASGLSIGEIKVNGTKLDVCVESFSFELDNQTEVQKCLGDNIYGGNILAMLTNITGSMTIAYSQKAHEMISNQMTGTTLSLELPIKFGNSKYVIKIPKFQVSGEIPSPSGTDLVTVDLSYTVVDESPVIEKHTA*	hallmark_hmm	common_virus	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0017	shell	direct	high	908	0.999	GCA_009378105.1_01736
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	128563	128709	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	10800	10946	GCA_009378105_1_24_120	GCA_009378105_1_24_120	+	133089	.	.	hypothetical protein	MEYITIIVDFMKYLIEKHGLFVIWLMVASLITLYKLDMILTAVHLFFN*	.	hypothetical_protein	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0018	shell	direct	high	146	0.993	GCA_009378105.1_01737
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	128761	129222	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	10998	11459	GCA_009378105_1_24_121	GCA_009378105_1_24_121	+	133089	.	PFAM:PF08809.10	Tail-assembly-chaperone	MAFDLTLLKKDAKINAKREIEFDGLELTLEIQVSEEFKRAAAEVQKIANTPKKVTKDSLKRGNQDEIGEYEAMLFILGEYCISQWNVTADGEPLAVNGDNFLILLDQGFEKDKLTQFITLLFETYASLSQEFEDNKAKLVKKSTTATNGKKSG*	phrogs_hmm	hypothetical_protein	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0019	shell	direct	high	461	0.998	GCA_009378105.1_01738
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	129588	130265	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	11825	12502	GCA_009378105_1_24_122	GCA_009378105_1_24_122	+	133089	.	.	hypothetical protein	MKKLLIAGVVGLSLVGCATTSTTYTPSRKQISEPPIGSTNTASLGDKLLLQGVMTEREALYFPTAQKFTLGSTIGSGYYAKQRETAEYEFFSNGTNETGGGTFRDVIGMEMPFGIALRKSDNAICVTSMIGGAGGCRDGLQFEKRNWTVAGSNSFQQTLLYNGKVGNKINIAYREFSSDLARPAFNNDVEYDLSESNQIGYKGALLEVIEANNQMIKYKVIKNFN*	.	hypothetical_protein	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0020	shell	direct	high	677	0.999	GCA_009378105.1_01739
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	130304	130564	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	12541	12801	GCA_009378105_1_24_123	GCA_009378105_1_24_123	-	133089	.	PFAM:PF16777.4	partition-protein-ATPase	MSYINSTELLQNQDTWKRSQVRLPNSLHQVVVQYANNQNMSLNTAIIHLLDIGLTSETQRVEGFRELKRLLNEANAKIQALENQEN*	phrogs_hmm	hypothetical_protein	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0021	shell	direct	high	260	0.996	GCA_009378105.1_01740
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	130738	131301	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	12975	13538	GCA_009378105_1_24_124	GCA_009378105_1_24_124	+	133089	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNNLPQNANNGNFVSVFHGDIDQTTEMLCNARDLHQFLNVGRDFSNWIKNRIKQYGFVKGQDFIVMKNLSSPKRATAKSRQQVMIDYHITLDMAKELAMIENNEQGRKVRRYFIQMEKQALQSTQSLTAQITETTITLKHFEDGLSHAGRYLATHGKQTKPRLKAKLNELLAKAQPFLPFSEFGGVK*	common_virus_hmm	common_virus	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0022	shell	direct	high	563	0.998	GCA_009378105.1_01741
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	131313	131495	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	13550	13732	GCA_009378105_1_24_125	GCA_009378105_1_24_125	+	133089	.	.	hypothetical protein	MGKYDMAALACESMNWASTLIHLAKQNKHHADTLLDIAGYLLDDGQIEFANMADEFEKSL*	.	hypothetical_protein	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0023	shell	direct	high	183	1.0	GCA_009378105.1_01742
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	131616	132008	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	13853	14245	GCA_009378105_1_24_126	GCA_009378105_1_24_126	+	133089	.	.	hypothetical protein	MSETTLTELSRTEATVLQSFIAQVDFWKNQHGDKANTIEITYYPEDDGFEVSNNEANNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTAFILSFKDNRYGVRAALASEAKTTDKADDAKAPNEA*	.	hypothetical_protein	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0024	persistent	direct	high	392	0.997	GCA_009378105.1_01743
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	132062	132775	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	14299	15012	GCA_009378105_1_24_127	GCA_009378105_1_24_127	+	133089	.	PFAM:PF05100.11	minor-tail-protein-	MPLNSDFQKPTVDGLITLFELDASKLGAGILRFHGHNHEHNDGVITFRGKAYNPQALSVTGLEMRSDGRASTPTLTLANNIAGVQGAVSAYCLQFNDFAAAKLRVITTLAKYLDPINFDGGNPTASDECKEQIWFVEQKTSENAQQVTFELSNPIDLEGQKIPVREITNYCHWAVVGKYRGEECGYTGAIMFDEHDNPTDNPIMDKCGGRMKSCVCRFGQNKPLPFGGCPASSLIGK*	hallmark_hmm	common_virus	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0025	shell	direct	high	713	0.999	GCA_009378105.1_01744
GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote	cenote	CDS	132784	133086	GCA_009378105.1	RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105.1_RCJA01000008.1	GCA_009378105.1|RCJA01000008.1	GCA_009378105_1_24	GCA_009378105_1_24@C11	15021	15323	GCA_009378105_1_24_128	GCA_009378105_1_24_128	+	133089	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MKLTKQLKADIISHAFDCYPAECCGLIVDKKYIPCTNKATDDEQFILCPKDFARAESMGQIQAIVHSHPDGNAEPSEVDRVQMGIHGIDWVICAFGYHAGG	mmseqs_cdd	common_virus	C11	15326	117764	133090	GCA_009378105.1|RCJA01000008.1@region_117765_133090@tool_cenote_CDS_0026	.	unmatched_CDS	none	0	0	.
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	1	363	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	2	364	GCA_009378105_1_5_1	GCA_009378105_1_5_1	-	24371	.	PDB:2FJR_A	Repressor-protein-CI	MELKDRLKYARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRAIELAHLFGVDVHWLISGEGEMTKNNYKLAPITEWDDSTPLDDDEAEIPFYKDIAFACGHGAVNDEVTHETRKLR	common_virus_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	506	736	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	507	737	GCA_009378105_1_5_2	GCA_009378105_1_5_2	+	24371	.	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription]. 	MSKTKNKAVQRLIEFFGSQMKLADALDVEQSSVSGWLNNRFYISRDNADLAESLTNGVVRSEELRPRKKAKTPRSN*	mmseqs_cdd	nonviral_gene	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0002	shell	direct	high	230	0.996	GCA_009378105.1_00169
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	776	1177	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	777	1178	GCA_009378105_1_5_3	GCA_009378105_1_5_3	+	24371	.	.	hypothetical protein	MNEFIIPNFNFVSNAFSKRRTDFDAQEREIAEFIKKGGKVINLNKEQTKKMVCKAHACRQYNPNAKIRLLLSHLQKTGEHMTSAQIKKQFGIKAAGSAVSRFNQREGKTLIKNKKLRDSTNHIYCVYYAAEVN*	.	hypothetical_protein	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0003	shell	direct	high	401	0.998	GCA_009378105.1_00170
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	1177	2004	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	1178	2005	GCA_009378105_1_5_4	GCA_009378105_1_5_4	+	24371	.	COG3756	Uncharacterized conserved protein YdaU, DUF1376 family [Function unknown]. 	MHYYSHNINDFNNATIHLSVEEECMYHRALAWYYSNELPLPSDKNKIYRYLRATTKKLQKAVDMVLEDFFILEDDGYHQARCDEEIAEYKKKQEVASNAGKASANARKKKAEQDENNQQANDEHHINDRSTAVQQEINDRSTTVQPTNNHKPITNNIYTHTNAREQNFCSLADWQPPPMQEMQSELLRAGVNVTLNASQYQITLQDFKAYYDNQATLGKPLNTDFVRRQKFRQWLSRSDSKKPTNRTDELAAMANNFGENFYSKNTNPKLEVTHE*	mmseqs_cdd	nonviral_gene	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0004	shell	direct	high	827	0.999	GCA_009378105.1_00171
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	1997	2611	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	1998	2612	GCA_009378105_1_5_5	GCA_009378105_1_5_5	+	24371	.	.	hypothetical protein	MSNLMIQIHSPSHLVAVIQGLAVGSFEKRYGAMKTADVVNIFAFVTQDLTPEQLVVGINTMANKGFCPDAALFRRWCLGLASFSHDDTISDSYRGKSGALGNILKWIAHPKNTVITVAEKQAYDATYHLWQDIKSEHDKWRAENAFKDEYELIVNRFVKDGITCQVYTPPPAIENKPNDEHWPVSKDRQDEIFATLGKITGRLV*	.	hypothetical_protein	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0005	shell	direct	high	614	0.998	GCA_009378105.1_00172
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	2714	3106	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	2715	3107	GCA_009378105_1_5_6	GCA_009378105_1_5_6	+	24371	.	PFAM:PF06356.10	Endonuclease	MMRPDEHALFTKFTGIKFVKYKNKKTQIDGITFDSKKEAERYKVLKSMQADGLINDLECQPKFILIPSQYFETIGRRERGVDYVADFRYKDNLGQIIVEDVKSAITAKDKVYRIKRKMVKYFHDVEIVEV*	common_virus_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0006	shell	direct	high	392	0.997	GCA_009378105.1_00173
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	3103	3345	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	3104	3346	GCA_009378105_1_5_7	GCA_009378105_1_5_7	+	24371	.	PFAM:PF11753.7	nucelotide-kinase	MNELKQTENDAVNHPSHYTSDPSGIECIQITRHRNFNIGNAIKYLWRAGLKDGNSDIQDLQKAVWYIQDEIERLEKLKGV*	common_virus_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0007	shell	direct	high	242	0.996	GCA_009378105.1_00174
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	3345	3722	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	3346	3723	GCA_009378105_1_5_8	GCA_009378105_1_5_8	+	24371	.	PFAM:PF06530.11	anti-termination-protein-Q-like	MSNEKLEAYKKEFVEWGRWVRCDPNRLSYPSPWFEMIMRDNIPCSSVSPNITDDRAMAIDKAVCALARYSVLQYQVFCMRYLLGYSERRIADLADERILRNRRNRVKQELDKAGGFIYGFLENNT*	phrogs_hmm	hypothetical_protein	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0008	shell	direct	high	377	0.997	GCA_009378105.1_00175
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	4787	5242	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	4788	5243	GCA_009378105_1_5_9	GCA_009378105_1_5_9	+	24371	.	PFAM:PF05119.11	Small-Terminase	MKGRKPKPTAIKELTGNPGKRALNKNEPKFAQIIEIEPPVWMTATAVTMWRTVMPELLATGVLTVADVHNVEAFCMSYSRWREAEQEVERYGLVIMDDNGKLNKNPALTIINEAKTQMMKFGSLLGLDPSSRTRLTGAANSEPIANPFADL*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0009	shell	direct	high	455	0.998	GCA_009378105.1_00177
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	5239	6933	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	5240	6934	GCA_009378105_1_5_10	GCA_009378105_1_5_10	+	24371	.	PFAM:PF03354.14	Large-Terminase	MTYPNVQKALDYIHAVLSGEIIANKYIKLACQKHLDELKNSETNPDYPYFFDPAKAEKVAKFIQLLPHTKGKWASKGEKIALESWQIFACCLPFGWIKRATGFRRYTKILIFVCRKNGKSAIAAGIGNYMFCADGEFGAEVYSGATTEKQAWEVFRPAKIMVERTKALKDFYGIEVNASNMARLADGSRFEPIIGKPGDGSSPSCAIIDEYHEHKNNDLYDTMETGMGAREQPIMLVITTAGSSIGGACHQMVRDAEKMLDGVMDIPDLWAVLYGMDKDDDWTSEIALAKANPNYDISVSGEFLKARQRDAIASSSKQAIFRTKHLNEWVGAKNAWMNMAKWRDAPKRCELKELEGRKCFIGLDLATKIDMVALILLFPPTADDPNYHVHGRYYLPDVRVLEELDSNTDRYRAWDADGLLTLTMGEVVDFDAIKDDLREFYGRFDVQEVAYDPWQATQLAQEMEKEGMVMVELRHTVQNMSEPMKELEALVLQKRLAHGDCPILTWQASNVVATLDKKDNIYPNKERAENKIDGMVALIMALSRAIVHTETGNVDEFFDNMIIA*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0010	shell	direct	high	1694	0.999	GCA_009378105.1_00178
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	7011	8222	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	7012	8223	GCA_009378105_1_5_11	GCA_009378105_1_5_11	+	24371	.	PDB:8CEZ_K	Portal-Protein	MNDENWWSRFYARLFGGGKRLDKGSEVAPFNSMHMPSGTAVTAETALKLSAVWACVRLRSQTIASLPLHLKSDSKELATDHHLYRILHDSPNADMTASEFWESVIVSLDLWGNAYVYITRLGGRVVSLDILDPSITVVKRNRDGDISYKVGEDIFGAEDVLHIKGFTMDGLVGLSPIRYQAGVMGAQIDANNAASHTFGNNLKAGGFLQTDNILNSEQRQKLRGNLEYFSKPENAGKYMVLEAGMSVSSSGVKMNPSDAQLLETRYFGIEEICRAFGVPPQLIGHTDKASSWASSLEGMNLGFLTYSLRPTLERIEQAIRKKLLSPSERSQYSPKFSVEGLLRADSQGRANFYTTMLQNGVMTRNEVRALEDLPPMSGGDSLTVQLNLTPLEKLGQDHENQIN*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0011	shell	direct	high	1211	0.999	GCA_009378105.1_00179
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	8203	8853	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	8204	8854	GCA_009378105_1_5_12	GCA_009378105_1_5_12	+	24371	.	PFAM:PF04586.16	prohead-serine-protease	MKTKSINFEPSIVKDDGFFSGYCNVFDVVDSYGDSVQKGAFVKSLAKFETRSKMPPILWQHDRAQPIGVWTALKEDEHGLYGEGKLLIDDVPKAREAHALIKAGVIDGLSIGYRVEQADYDNTKEVLLLKELDLFEISIVTFPANDASTVTVVKSALAQGQLPTLSEFEKFLRDAGFSKSQATAIASHGLRQLLGEPAELKDALQIIKSITGDINV*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0012	shell	direct	high	650	0.998	GCA_009378105.1_00180
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	8846	10027	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	8847	10028	GCA_009378105_1_5_13	GCA_009378105_1_5_13	+	24371	.	PDB:3QPR_G	Major-Capsid-Protein	MSDMTKQLATELAKATDYVKGLGEELTGRLEKGENNLSTLKGDVDEALKSMGDVKARLDAVEQKQARRAQNQEPEKSLGERLFESDAFKQFADNPTAGNRAKLNIKATITSATTDTSGAAGALVQTQRLGGIVAPPDQRLRVRDLLMKGTTDSNALEYVRETGFTNSAAAQQNEGDKKAQSHIKFDTQSVSVRTLAHYVKASRQILDDASALASYINGRLMYGLKLVEDRQLLNGDGENGNLKGIIPQATAFADKATLSTYTIIDQLRLAQLQAVLAEYPASGIVLNPIDWAKIELEKDADNRHIIGLPQGTANRTLWGVPVIETTAMGTGKFLTGAFNLGAQIFDRQQAAIAVATENEDDFVRNLVTILCEERLALAVYRPEAFIYGDLVAK*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0013	shell	direct	high	1181	0.999	GCA_009378105.1_00181
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	10259	10492	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	10260	10493	GCA_009378105_1_5_14	GCA_009378105_1_5_14	+	24371	.	.	hypothetical protein	MEYEVLKQHYGDKQYYEGDIRQLDDDFTAKRLIEFGLIGKAHANKKVQSKAKKVPSNKAEPVLENKGDDGDDTEDNA*	.	hypothetical_protein	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0014	shell	direct	high	233	0.996	GCA_009378105.1_00182
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	10464	10757	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	10465	10758	GCA_009378105_1_5_15	GCA_009378105_1_5_15	+	24371	.	PFAM:3JVO_G	Head-Tail-Connector-protein	MAMTQKITLEMVKHQCRIDHDDEDDLLMRYLNAALIHASNYIDGLLDESNLAVQQAVLLLVGHWYDNREAVNNDYQTPQSIPFGFEALLQPYRNLGV*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0015	shell	direct	high	293	0.997	GCA_009378105.1_00183
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	10757	11095	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	10758	11096	GCA_009378105_1_5_16	GCA_009378105_1_5_16	+	24371	.	PDB:2KZ4_A	Head-tail-adaptor	MQAGKLKDRVSFMQHLELRSATGAPKRTWSVIDTVWGQFTPVSAKDVIAGKAAGVEILARLKIRYRDDIKRNMCVVCRGKTYDIIGEPLADNGSGKEYLTLMLQGAGDESER*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0016	shell	direct	high	338	0.997	GCA_009378105.1_00184
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	11079	11627	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	11080	11628	GCA_009378105_1_5_17	GCA_009378105_1_5_17	+	24371	.	PFAM:PF04883.11	tail-component	MKVSVKIEGLKELDEQLGKIDKEFRGKSLYESLNFASQPMLNAARRGARVAEKRYRRYMSHGQGEATYVKTKNGKWRAGKSKRAKRGEGKFEWQEPGLLKKSVRRRRLNKKSKNKHRASVGIYMHKGTGKTHGSAYYWRFIEYGTKKMPATPFIRPAYHNHEAEAVDRFKSRLAKSIKKHGG*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0017	shell	direct	high	548	0.998	GCA_009378105.1_00185
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	11696	12586	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	11697	12587	GCA_009378105_1_5_18	GCA_009378105_1_5_18	+	24371	.	.	hypothetical protein	MKKLLLSVLSIGITTSVYANCNYDQINSPEYKVDEITSKYMSNSFILSEKTGLFSRSLNNRQYADFANSNLKVSRTNVPTKYTQELYRSKTDNVVIGGKSYTRDRYVTTEFITPSCKTIYYMGGMPKNDILKANGEKLDDQDQLHIFGGSITPVSIKAKSRYDEFDGMYSLSTDMFDDNYLIRGNYNKKTGQLVVLQIYLKNLSFTGWSHFKSARDTNGGSYSVTQIDNDVDCSSKSVGLPCKITEVVGINITENLLRENPNGFKLKLYGKQEIIIEISPEVIKPFLEELDKIKSI*	.	hypothetical_protein	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0018	shell	direct	high	890	0.999	GCA_009378105.1_00186
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	12864	13055	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	12865	13056	GCA_009378105_1_5_19	GCA_009378105_1_5_19	+	24371	.	.	hypothetical protein	MNKFLSVLSVFATCLSYRPHLQWLKIRHAAVKKAVSLIAAMVSLSVKMDQSVHLRKFVNRVRA*	.	hypothetical_protein	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0019	shell	direct	high	191	0.995	GCA_009378105.1_00187
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	13052	13168	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	13053	13169	GCA_009378105_1_5_20	GCA_009378105_1_5_20	+	24371	.	.	hypothetical protein	MKLHSNLFTVKALAAGAACLAYGNTQFEFDATGLDWQY*	.	hypothetical_protein	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0020	shell	direct	high	116	0.991	GCA_009378105.1_00188
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	13277	13621	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	13278	13622	GCA_009378105_1_5_21	GCA_009378105_1_5_21	+	24371	.	PFAM:PF05657.10	tail-component	MNASRIIYEKLAPLVDSRVYPLFVPESVGQRPPYIVYQTISTQPDNTLDGITGHEWINIQIDVYHNDYDDMLALTDQVISVLDNIKPSEYGGCQYLYEDGLYRSLIEYGFWQTY*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0021	shell	direct	high	344	0.997	GCA_009378105.1_00189
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	13666	14097	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	13667	14098	GCA_009378105_1_5_22	GCA_009378105_1_5_22	+	24371	.	PFAM:PF16461.4	tail-tube-protein	MAKNVANLVDSFYQLFVSTDGEDFKKVEHLTKCSVPSDEKVLDDVTATDDKRTIKAVVDFKEESEIEFEFVVDPEDAAQKLVQKAFDDGSELHFQLKFVKASSESRKFTGLISKLSVDNEDTKKKLRKTATIAITGDVSKITE*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0022	shell	direct	high	431	0.998	GCA_009378105.1_00190
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	14153	14509	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	14154	14510	GCA_009378105_1_5_23	GCA_009378105_1_5_23	+	24371	.	CDD:pfam16459	Tail-assembly-chaperone	MKKTNTNTNSLINALLSRNKPTKVEIDGIDQPIYLRKITIGEQSALYKKVQTEEDTILNNSAYSILYSVCDENGEPMFTEADLPQIAQIDAGTVGELMDAIKKVNRFDEDEAELEKNS*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0023	shell	direct	high	356	0.997	GCA_009378105.1_00191
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	14584	14832	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	14585	14833	GCA_009378105_1_5_24	GCA_009378105_1_5_24	+	24371	.	PFAM:PF06223.11	tail-protein	MSASELSEWLAYDRLDPIGGYRGDIQSAVIACAMAGGKPSDYLIIDPNPMTDEEREAYELEQQKAELQAQMERTLAMFSTLG*	phrogs_hmm	hypothetical_protein	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0024	shell	direct	high	249	1.0	GCA_009378105.1_00192
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	14889	15266	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	14890	15267	GCA_009378105_1_5_25	GCA_009378105_1_5_25	+	24371	.	.	hypothetical protein	MRPALALLSLMSFSVAHANQPSTNDKLDDAINRLMANHSPISFTKPNLDTYQENVEKYYPNQDLSDKPNVRIGMTAFDVRYNSSWGEPSEISTIINQFGTQEIWIYGKWDKLLHLTNNKVTHIQY*	.	hypothetical_protein	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0025	shell	direct	high	377	0.997	GCA_009378105.1_00193
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	15375	18902	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	15376	18903	GCA_009378105_1_5_26	GCA_009378105_1_5_26	+	24371	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MAKVLSRLDILLHANTANYVREMKKATDKTKKELKSVADYGKLVGGQLGIAFATLGSAVSVSHIIATADQMQNLASQIRLATDSTEQFHAVQTELRAIANEQRSSFDAVVDLYSNSQRSLSALGKSQQDVINFTRNMTMAMNVGGRSAQAQAAALTQLGQALASGVLRGDEFNSVAEQAPILMDLIAKEMGVTSNAIRDLAKDGKITADVVYNAVAKATDSLSAMSAKMPTTVSQALQVIKNEYNYLIDDIMNQNSMMSQNIANALLWVAEHFRTLVSAAAMVGAVWLGIIAKNSALVTSFATLTGTSLANTKASIANAFSVQGQITAYQVLELKILSLSTGLGFKIVKTIQATTNAVAYARSLVGLAKSFNTATAAARLHTLALAGVTTAKRRAIGVGILATRTITGLGGAFMSLGRIITAHPILVLTAVIGAVIARTEGLSGAVKSLGDAFSVSGVLAMDFVGGVVDGLGTAWTVTANYFDNLIGGSANATSFAQTAFGGFFAGTHKGFVGVLQITARVFDLAGASVVTFTQYAWKNISSLGTAITNVFKGIGNFIAFVLEGVINDVTAKINFVIDGVNTISGKVGGGTVALLGRVRIGRMNYGSTDFGFGGFTASVAKNNTHYLENQVVNAYDKVQSSAKQAHDANLGLAGSMADVAKGAGKASKELDDNYKSQLAEWERAKWDMSTPFISELSKIEFEITSVSGKFHRASDDMKNNLRKLAREMDIAKANFELQGTYTEAMRQIHLSNADGSKYLEMAYDLQDTANALHLADEEQKKQILSTLATLEAVTKARELQKQTRDSRNELALLGVEEGMARELFAIEQQRTETLGQYNHLLKDGHTEQYKVIEMAVNALEQEQKKILVTKEYHSLVQSLKTDEEKRLETLKSQLNVLTMHSQVMGANLDIERAKQLISQTVGLATPTNHYDELNAKTAGQYASLDTGLQALLDNERLTEEERIKIKEWGASERAKIEQAHSTAMNSLILSDSEDMFGSLASIAKDSLGEQSKAYRAMFAIEKGFAIARSIMAIQTALANASASGPFPANLGMMATVASQTANIISAIKSVVMPVGQAHDGIMSVPKSGTWNLEKGERVLPRHTAKALDDKLASMSNGGGQVVINQHITINADGSHDVRDDSKNQMGQALKTGVLAIVHGEMRQGGSIYNFVKNGR*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0026	shell	direct	high	3527	1.0	GCA_009378105.1_00194
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	18913	21258	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	18914	21259	GCA_009378105_1_5_27	GCA_009378105_1_5_27	+	24371	.	PFAM:PF05939.12	minor-tail-protein	MKTFTWKMNMGASASVHHAVSKTQFGDGYAQRVSVGINNQRTDWSGSKTGDWQTVILPIKTFLDEHKGVIPFLWTNPHGQTKKYVCENYEISQKKGNFWEISLKFEQSNSDGSSVPLLDFGNQNSGTSTPNVPQSALDDINKKIQDEIELSTQKDDAHDKAIQSLNTSKTSLSKSIDEIKEQLAGVSSVPMSVAWDSITGKPSSFNPSSHSHAISDISGLQSLLNAKANSNHSHAWNSITDKPQSFTPSSHVHQASDIADLHTILSKYATKDEIPQINTDGLTIDTSNLATKTSVETLANKVTEASEALKSETKLRANSIAAIDSKITTEVDRSSKKDAEHDDEIASLKRTKADLSHTHTMSEVTDLSAELERYALKTELNNISVDTSHLATKSSVNELSEQIATKADQSHRHTITEVSGLQGILNNKLNSNASARSAQKLTTPRRINGIAFDGTQDITLPTPTNISWSAISNKPANFTPSAHRHAIGDITNLQRELDNKASRNHSHTWNSITNKPANFTPSAHRHAIGDITNLQRELDNKASRNHSHTWNSITDKPTTLTGYGITDAMRTDTDSETTGLISINRADSYIQGKQGSVRRWYVGSGSSSNHNVQLSNLTHNTQLELTNNRITSNKPLYVGTRRVLLEGDETASTTVQVTNHPTITLTLGATLEMTTFVYSNGRIVHRLNYKNMTKPALTALTSSSSRTKTLTVNLPTAMPRQVVQVNAHFYDSGYIGYASSLLAVWKLSETTNSTVPLKISDTNSSSNFSGFSDLVVTIEGF*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0027	shell	direct	moderate	2318	0.988	GCA_009378105.1_00195
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	21258	21818	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	21259	21819	GCA_009378105_1_5_28	GCA_009378105_1_5_28	+	24371	.	PFAM:PF14301.5	tail-protein	MHYIKLIDDKGHFEFIHEDFLYLYSDTADFIAIAQEDYQTYVQSVNQELIYQHGKIISLTNQISADEIKQTNQELVWSDIKDKRTKHTHSGVYIASVDKWFHTDESSRIQYLALITLPSLPDNLQWKTMDNSFITLTRPLLTELTSAMLIKEQQDFMNAERHKQLMMRVDNPLDYDYSDGWSAIYA*	phrogs_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0028	shell	direct	high	560	0.998	GCA_009378105.1_00196
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	21811	22260	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	21812	22261	GCA_009378105_1_5_29	GCA_009378105_1_5_29	+	24371	.	PFAM:PF05708.11	enoyl-CoA-hydratase/carnithine-racemase-like	MHRKVYLALYKGRADKFSYRFYDAVTRFFTRGQYSHCEIAVHIHNNIYHCYSSSIRDGGVRRKSMMLDDKWDLIKLDIDESQIRHFYGATKGSGYDLLGALGVVLGLRQHPDKYFCSEWCFEAITNKQNGWRFSPNDLYAIKSILTRRH*	phrogs_hmm	hypothetical_protein	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0029	shell	direct	high	449	0.998	GCA_009378105.1_00197
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	22317	22709	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	22318	22710	GCA_009378105_1_5_30	GCA_009378105_1_5_30	+	24371	.	.	hypothetical protein	MSETTLTELSRTEAQVLQSFIAQVDFWKNQHGDKAATIEVIYYPEDDGFEVANGEPNNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTEFSLSYKNDRYGVRAALASEATDKADDGAEQAEQDK*	.	hypothetical_protein	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0030	persistent	direct	high	392	0.997	GCA_009378105.1_00198
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	22808	23476	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	22809	23477	GCA_009378105_1_5_31	GCA_009378105_1_5_31	+	24371	.	PFAM:PF05100.11	minor-tail-protein-	MSFNTDIQQTTVQGFITLYELDARKLGGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGRASTPKLSIGDKINGIQGAVSALCRLYDDFARAKLTVTHTLQAYLDSHDAQNYRQQEWYIEQKVSENPSLGIVEFELSNPVDFEGQKIPVRQITTYCNEAVCGRYRGEICGYTGTARFTHDGKPTDDPTLDRCSGLLAHCKLRDNEGSFCGFPAAGLV*	hallmark_hmm	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0031	shell	direct	high	668	0.999	GCA_009378105.1_00199
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	23473	23676	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	23474	23677	GCA_009378105_1_5_32	GCA_009378105_1_5_32	-	24371	.	.	hypothetical protein	MADKASPQARKKATANYFDKSLARIGLVISHTEPHVLDALNQIMAHKDCSKAMAIKTALVEYAKTLD*	.	hypothetical_protein	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0032	shell	direct	high	203	0.995	GCA_009378105.1_00200
GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote	cenote	CDS	24060	24368	GCA_009378105.1	RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105.1_RCJA01000014.1	GCA_009378105.1|RCJA01000014.1	GCA_009378105_1_5	GCA_009378105_1_5@C0	24061	24369	GCA_009378105_1_5_33	GCA_009378105_1_5_33	+	24371	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MRLTKTIKEAIHAHAKICYPAECCGLIIDGQYYPCANIAPNPAEHFEIDHLDMVEMQEYHGEIQAIVHSHPDGNAEPSEVDRVQMGIHGIDWVICAFGYHAGG	mmseqs_cdd	common_virus	C0	24372	0	24372	GCA_009378105.1|RCJA01000014.1@region_1_24372@tool_cenote_CDS_0033	.	unmatched_CDS	none	0	0	.
GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote	cenote	CDS	2	148	GCA_009378105.1	RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105.1_RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105_1_6	GCA_009378105_1_6@C0	3	149	GCA_009378105_1_6_1	GCA_009378105_1_6_1	+	19094	.	.	hypothetical protein	KLKSETTPDCVGNALILHHPHGSLSVREIYGDNWQRRTAMVVRHQSLG*	.	hypothetical_protein	C0	6269	0	6269	GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote_CDS_0001	shell	ambiguous	low	8	0.054	GCA_009378105.1_00202
GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote	cenote	CDS	140	547	GCA_009378105.1	RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105.1_RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105_1_6	GCA_009378105_1_6@C0	141	548	GCA_009378105_1_6_2	GCA_009378105_1_6_2	-	19094	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MLYPIAIEKPVSTNECYGVIVPDIVGCFSAGDTVDKAVKNAYEAIVLHLDMLADDGEDIPQATDIAHHQENPDYQGMIWAVVDIDLSAYMGKSEKINVTLPSRLIVKIDEKVKAHKSLYKSRSNYLAQLASRDLA*	mmseqs_cdd	nonviral_gene	C0	6269	0	6269	GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote_CDS_0002	shell	direct	high	407	0.998	GCA_009378105.1_00202
GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote	cenote	CDS	580	762	GCA_009378105.1	RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105.1_RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105_1_6	GCA_009378105_1_6@C0	581	763	GCA_009378105_1_6_3	GCA_009378105_1_6_3	-	19094	.	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family [General function prediction only]. 	MNSRQMIKLITDDGWYEVAVRGSHHHYKHPTKQGKVTIPHPKSDLPIGTVKQILKQAGLK*	mmseqs_cdd	nonviral_gene	C0	6269	0	6269	GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote_CDS_0003	shell	direct	high	182	0.995	GCA_009378105.1_00203
GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote	cenote	CDS	862	1455	GCA_009378105.1	RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105.1_RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105_1_6	GCA_009378105_1_6@C0	863	1456	GCA_009378105_1_6_4	GCA_009378105_1_6_4	+	19094	.	PFAM:PF06805.11	tail-assembly-protein-I	MKTVILHGILAKKFGKSFRLDVKTAKEACHALACQIPAFYAFMMNAEKQGIKFAIFNGEKRTQKTNIGEKQVDDITTASHIHIMPRVIGSGGKTMGWLQVVAGWVLVGVGVVTGNAGLIAAGAGLMLGGVSSLLMPTPKLDPNNEDGNRPNNGFGGAITTVAQGNPVPILYGEREIGGFIVSAAIYAEDKMVQGVKI*	hallmark_hmm	common_virus	C0	6269	0	6269	GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote_CDS_0004	shell	direct	high	593	0.998	GCA_009378105.1_00204
GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote	cenote	CDS	1464	2981	GCA_009378105.1	RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105.1_RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105_1_6	GCA_009378105_1_6@C0	1465	2982	GCA_009378105_1_6_5	GCA_009378105_1_6_5	+	19094	.	PFAM:PF13550.5	tail-protein	MNIYGAKRQKQSSNKPYIQKDTASSTNSYQALYGLSEGEIYGLVDGGKSIRLDGTPIINDNGEPNFPDVSWDFRAGSIDQTHIKGFSSVENEQSVNVELRHDRPYTKAINNKQLSAVAIRLGFNSLREQKGNGDVVGYRIEYAIDVQTDGGAWEMVLNTAVDDKVSQGYQRSHRIDLPKAQQGWSVRVRRLTPNRDSETVSDTMVVSAVTEIIDAKLRYPCTALLALKYDAQTFSNIAKVSVHVRGMLIQVPTNYNPTARTYDGLWDGTFKLAYTNNPAWVFYDICTAKRYGLGDRLAGKVDKWSLYRLAQYCDEMVDDGKGGKEPRFTVNVYLQKADDAYRVLQNLASVFRALSFWDGTSIVVDADTPKEPVYVFSNANVIGGEFSYTGTRARDRHTIVKCAYDDPDNNFETDYIYVQDEHAIAKYGINQLELNLFGCTSKGQAQRAGIWALKSEQLETETVSFSTGLDGFIPKVGEIIHVQDNHRAGRKCVLGRWPLFGWGAF*	hallmark_hmm	common_virus	C0	6269	0	6269	GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote_CDS_0005	shell	direct	high	1517	0.999	GCA_009378105.1_00205
GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote	cenote	CDS	3316	4509	GCA_009378105.1	RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105.1_RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105_1_6	GCA_009378105_1_6@C0	3317	4510	GCA_009378105_1_6_6	GCA_009378105_1_6_6	-	19094	.	PDB:1Z19_B	Integrase	MLTEVWLKANNGKPRDKVTEIADRDGMSVRISPKGKIVFQLRYRFNGKLKRFDLGVYPLISLKQAREKSLSAKTQLLHGKDPKLEEQIAKQAYINADTFYECFLQWYDKSAVITKKQASDIKRSFELYVFPVIGSLPINDITLQQYIIIIESISEKTPGIAERILTNTKQMLKWAKKREIVTHNILADLELSDFNLVRVKRKRYLSDDEIILFYKALYGSKISYRNRLATELALMFGCRGIELRRAKITDFQDGVWTVPPENHKVGHITQQPLIRPILPPMQALIDEAIAISRSEYLFDRRGEMLEKNAFLDITAGLIHWIDRHCSIQLPRFTFHDLRRTARTNFSAFTSRDIAEIMIGHTVGNMQQVYDHYNYLPQQTAAYKQWLKKLAELKQVAL*	common_virus_hmm	common_virus	C0	6269	0	6269	GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote_CDS_0006	shell	direct	high	1193	0.999	GCA_009378105.1_00206
GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote	cenote	CDS	4735	5217	GCA_009378105.1	RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105.1_RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105_1_6	GCA_009378105_1_6@C0	4736	5218	GCA_009378105_1_6_7	GCA_009378105_1_6_7	-	19094	.	COG1607	Acyl-CoA hydrolase [Lipid transport and metabolism]. 	MSGFCTLNIASTDLTMTVLMTPDMANFSGNVHGGTILKLLDQVAYACASRYAGGYVVTLSVDQVIFKEPIYVGELVTFLARINHVGTTSMEVGIRVEAENIQTRTARHTNSCYFSMVAVDQAGKPVPVPPLVVDDSLAKQRYEMAKKRKELRIKLQQHDW*	mmseqs_cdd	nonviral_gene	C0	6269	0	6269	GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote_CDS_0007	persistent	direct	high	482	0.998	GCA_009378105.1_00207
GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote	cenote	CDS	5240	5560	GCA_009378105.1	RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105.1_RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105_1_6	GCA_009378105_1_6@C0	5241	5561	GCA_009378105_1_6_8	GCA_009378105_1_6_8	-	19094	.	pfam04358	DsrC like protein. Family member DsvC has been observed to co-purify with Desulfovibrio vulgaris dissimilatory sulfite reductase, and many members of this family are annotated as the third (gamma) subunit of dissimilatory sulphite reductase. However, this protein appears to be only loosely associated to the sulfite reductase, which suggests that DsrC may not be an integral part of the dissimilatory sulphite reductase. Members of this family are found in organisms such as E. coli and H. influenzae which do not contain dissimilatory sulphite reductases but can synthesize assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins. The strictly conserved cysteine in the C-terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds.	MNHLPSLDDDGHLKNHTDWTPKIAQRLADTIGVTLESEHYQIIGEVRVFFETYHHSPSTRPLIKYLMASLPNLDISNQKLQKLFNTGLVARHVNRIAGLPKPPNCL*	mmseqs_cdd	nonviral_gene	C0	6269	0	6269	GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote_CDS_0008	persistent	direct	high	320	0.997	GCA_009378105.1_00208
GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote	cenote	CDS	5576	5881	GCA_009378105.1	RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105.1_RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105_1_6	GCA_009378105_1_6@C0	5577	5882	GCA_009378105_1_6_9	GCA_009378105_1_6_9	-	19094	.	.	hypothetical protein	MKFLIHINTDSELISYEAIALALTLATFDHDIQIELGENVLVLLNNPKSRIYGMIQSLALYDLPKAYHNFQAVNALDKVIQLSLQSGSLALDDYDSKLYFQ*	.	hypothetical_protein	C0	6269	0	6269	GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote_CDS_0009	persistent	direct	high	305	0.997	GCA_009378105.1_00209
GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote	cenote	CDS	5891	6268	GCA_009378105.1	RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105.1_RCJA01000015.1	GCA_009378105.1|RCJA01000015.1	GCA_009378105_1_6	GCA_009378105_1_6@C0	5892	6269	GCA_009378105_1_6_10	GCA_009378105_1_6_10	-	19094	.	TIGR03012	sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate. [Protein synthesis, tRNA and rRNA base modification]	MILLLVTSSPHSHAGKLAVEYATKQLHLGNQISVFFYGDGAYTANRLMWQTADVPSVAKQWQALSNNHGITLPVCVSTALARGVCDAQNATRHGLIGDNLLPPFSLVGLSELAMMIDDTTSVVQF*	mmseqs_cdd	nonviral_gene	C0	6269	0	6269	GCA_009378105.1|RCJA01000015.1@region_1_6269@tool_cenote_CDS_0010	persistent	direct	high	377	0.997	GCA_009378105.1_00210