core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	1	1175	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	1	1176	GCA_009378725_1_23_1	GCA_009378725_1_23_1	+	215967	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	ESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQTPSRQSTSTANTNSATHKVSAGESLIAIARKYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKTANTTMANTSSSPSVNKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQQTSQATQSTKNNQSTQSTATHRVQSGESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKAESSTPSRLGNTKNNSTRTPANTNIGITENYTVRSGDSLTMLSNRFGVAIGDLATANGLASNANLRIGQTLKVPKLTTTYTVKAGDGLIALARRYGISTQELAKMNNLEPTADLRIGQVLTVPNK*	common_virus_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0001	shell	direct	moderate	1163	0.99	GCA_009378725.1_00944
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	1332	3164	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	1333	3165	GCA_009378725_1_23_2	GCA_009378725_1_23_2	-	215967	.	COG1274	Phosphoenolpyruvate carboxykinase, GTP-dependent [Energy production and conversion]. 	MTAKITAPDFVRHQALIHWVAEIAALTKPAAIEWCDGSEEENQRLIDLMIKNGTMIKLNEDKHPNSYLAFSDPTDVARVEDRTYICSKEEIDAGATNNWVEPSQMRTKLNDLFDGCMAGRTMYVVPFSMGPLGSHIAHIGIEITDSPYVVVSMRKMARMGKEVYDVLGADGEYVPCVHTVGSPLTEGQKDVAWPCNDDKYIVHFPETREIWSYGSGYGGNALLGKKCLALRIASAMGREQGWLAEHMLILGVTNPQGKKHYIAAAFPSACGKTNFAMLIPPAGYEGWKVETVGDDIAWIKPSEDGKLYAINPEAGFFGVAPGTNTKTNSNCMSTLGSDVIYTNVAVTDDGEVWWEGKTKETPANLTNWKREPHTGAERAAHANARFTVSAKQCPSIDPQWENPEGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAATMGSETTAAATGQQGVVRRDPFAMLPFTGYNMADYFNHWLQMGENLGKKAKAAGNQLPKMFKVNWFRRDTNGDFVWPGFGQNMRVLQWIIERCEGTANAVRTPIGLVPTYDDINWDQSDFTKAQFELVTSQDKDAWIKELESHAELFDKLGERMPTALKAHNAKLKADIEQA*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0002	persistent	direct	high	1832	0.999	GCA_009378725.1_00945
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	3462	4880	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	3463	4881	GCA_009378725_1_23_3	GCA_009378725_1_23_3	+	215967	.	PDB:3BH0_A	Helicase-ATPase	MAKAKSSYICQNCGAIYGKWAGQCTDCGEWNTLVEAPNTSLPHHHKSKTTTAPRKTANYAGAVSAVMTLDHVGVTLETRMPTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGDSLSGSALYITGEESLSQVAMRAVRLGLPTDRLRVLAETNVDTICAALTTEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDSRFRMIRAIKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIHTSGMDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPVRLCVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRANAPAANHPQFKNIQIIAVDRLDEAIYQAFEINAG*	rep_hall_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0003	persistent	direct	high	1418	0.999	GCA_009378725.1_00946
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	4922	5641	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	4923	5642	GCA_009378725_1_23_4	GCA_009378725_1_23_4	-	215967	.	COG1118	ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. 	MSIKIQNIHKTFGDFVALGEISIDISTGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYFDSIDVTDIPVQHRGIGFVFQQYALFRHQTVAQNIAFGLTLLPRNTRPSANTIDRRVDELLDLVQLSHTKTRYPHELSGGQRQRVALARALATEPKLLLLDEPFGALDAKVRKSLRDSLKDIQREIGITSILVTHDQEEAQAISDKIVIMNHGQIEQIGTPSKLFAQPSSDFVVDFLGL*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0004	persistent	direct	high	719	0.999	GCA_009378725.1_00947
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	5734	6573	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	5735	6574	GCA_009378725_1_23_5	GCA_009378725_1_23_5	-	215967	.	COG4208	ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. 	MSHTSSYLYQKNPATRDKPWVRWSLIGIAVVFMGVMLVVPLVSVFYEALKEGWQAYQAALLEPDALASIKLTLITAAIILPINTIIGVALAYLITRHQFRGKFVITTLLDLPFAVSPVVAGLMFVLVFGANTRLGGYLESMGIQVIFATTGIVLATLFVTFAFIARELIPLMQAQGDSEEQAALTLGANGWQMFWKVTLPNIKWALLYGIILTNARAMGEFGAVSVVSGHIRGETNTVPLMIEIAYNEYAFTLAFALSSLLALLALITLVAQGLMSHKK*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0005	persistent	direct	high	839	0.999	GCA_009378725.1_00948
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	6618	7496	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	6619	7497	GCA_009378725_1_23_6	GCA_009378725_1_23_6	-	215967	.	TIGR02139	sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]	MLNQPIPLKNRARRVMPFFGLSMGISIFALGLLVILPFLMMILTTLQMSFDDIMQTIREPQVFAAIKLSLSMAMLATLTNLIFGTLAAWVLVRYEFWGKSFLNALVDLPFALPTAVTGIALATLYAPNGLFGQWFTHLGILLFNEPIKIAFTPIGIWLALVVVSFPFIVRAVQPVLAELSVEFEEAAAVMGAGRLTAFCRVILPEISPAMLIGAGMMFARATGEYGSVIFIAGNIPMQSEILPLIIVSKLEQFDVAGAACVSLFMLLISLVFLFTMNFIQWKLSARLGAKTN*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0006	persistent	direct	high	878	0.999	GCA_009378725.1_00949
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	7846	8286	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	7847	8287	GCA_009378725_1_23_7	GCA_009378725_1_23_7	+	215967	.	.	hypothetical protein	MMMKNKWMRGLAILVLSLPTVTYAKTAAPKASEAPEVSLTQEEQMAIDFCDFSAYGVMHIAGDHQGGATKSEALTNHDKRMAELKDLIDLDPETATMLDKYWKGAIDRIFQESVQKTDAEKQAFVMGVGESSFYSCLDQVLKTPKN*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0007	persistent	direct	high	440	0.998	GCA_009378725.1_00950
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	8317	9492	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	8318	9493	GCA_009378725_1_23_8	GCA_009378725_1_23_8	+	215967	.	PDB:1OYW_A	ATP-dependent-DNA-helicase	MTETTVKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCHELTRFSQLYNLCITGGSDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKVTMLSGDVAQQKRERYLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDAFNLPALERHIDQKFKLNQFEFLDEHK*	common_virus_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0008	persistent	direct	high	1175	0.999	GCA_009378725.1_00951
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	9506	10681	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	9507	10682	GCA_009378725_1_23_9	GCA_009378725_1_23_9	+	215967	.	COG0635	Coproporphyrinogen III oxidase or related Fe-S oxidoreductase [Coenzyme transport and metabolism]. 	MYPDLLDPAHIPLSLYIHMPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIGGGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTIGINRLSIGVQSFDHNALTVLGRIHNPDQASNAIRAARIAGFDRVNADLMYGLPNQNPSKAVNDIQTAIDAGATHLSWYQLTIEPNTTFYRTPPQLPDEEIMAEIETLGQSVLTKHGFYNYEVSAWHGPNDAPCQHNLNYWQFGDYLAIGAGAHGKLTLKNHPDYQDGIYRYQKSRQPKDYLAFEDAPKMVNFERISDDNLPFEFMMNALRLKDGVSTDVFETRTGLLISTIDNEMLPLQHQGLMVLDPLRIAPTRLGFRYVNYLVSQFI*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0009	persistent	direct	high	1176	1.0	GCA_009378725.1_00952
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	10865	11005	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	10866	11006	GCA_009378725_1_23_10	GCA_009378725_1_23_10	-	215967	.	COG5510	Predicted small secreted protein  [Function unknown]. 	MKKVLVASIAAVVVLTGCNAIKGFGKDVSKAGEAVSDTAQKVEKKI*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0010	persistent	direct	high	140	0.993	GCA_009378725.1_00953
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	11253	11798	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	11254	11799	GCA_009378725_1_23_11	GCA_009378725_1_23_11	+	215967	.	COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]. 	MSQFSDALIHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEEVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQLGFVGDIGQSVGYHKPTSR*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0011	persistent	direct	high	545	0.998	GCA_009378725.1_00954
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	11914	12129	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	11915	12130	GCA_009378725_1_23_12	GCA_009378725_1_23_12	-	215967	.	.	hypothetical protein	MTDSTTSPARQKATNTYRQKALANIALVISHTEPHVLDALNQIMAHKDCSKAMAIKVALVEYANTLSQTSR*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0012	shell	direct	high	215	0.995	GCA_009378725.1_00955
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	12534	12938	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	12535	12939	GCA_009378725_1_23_13	GCA_009378725_1_23_13	-	215967	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MLYPIAILKGGDKTAHGIFFPDVPNLASACDELQDIHKMALECLDVHFSGLVADGEEIPLPTNFDAHTQNSQFDGMMWAWVDVDLSKYDVKSHKINITLPNHLIAKIDEKVAAHKSLYKSRSNYLAQLAMADLA*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0013	shell	direct	high	404	0.998	GCA_009378725.1_00956
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	13204	13401	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	13205	13402	GCA_009378725_1_23_14	GCA_009378725_1_23_14	-	215967	.	PFAM:PF16777.4	transcriptional-regulator	MPKIVANPKTRAQIQKDSDARRGVKPIGFKVPIEFAELLDELAKQSGKTKNIIIMEAVELWAKQL*	phrogs_hmm	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0014	persistent	direct	high	197	0.995	GCA_009378725.1_00957
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	13977	14414	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	13978	14415	GCA_009378725_1_23_15	GCA_009378725_1_23_15	+	215967	.	6AF2_A	HIT domain-containing protein	MFQLHPTLAKDTFLVGDFPLSTVRLMNDCQFPWLILVPRVSGIKEIYELSAADQVQFLRESSWVSSQMAKIFGADKMNVAALGNQVSQLHFHHIVRYQNDAAWPNPVWGHEAMPYTQEVLSHMQQTLMMALRGHHQMPFDWKMDV*	hhsuite_tools	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0015	persistent	direct	high	437	0.998	GCA_009378725.1_00958
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	14568	15230	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	14569	15231	GCA_009378725_1_23_16	GCA_009378725_1_23_16	+	215967	.	PRK00043	thiamine phosphate synthase. 	MTLQSIDKVPKLYLLTNDDELTTLLDKLERVFDTGAVSLLQVRRKSTLKLYDLATVYREAEMIVSLANDYDIKVVMNDSLELASHFGTGLHLGQRDGSVRVAREILGDHVVIGRTCHTDLALFKEAKREGATYGAMGTVFASITKPRAKIISKDILKKACELDFPLCVIGGITLENIHQLRDKLNGAAIDYIAVTADIMGHSVDTIADKCLAWQQKLNTW*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0016	persistent	direct	high	662	0.998	GCA_009378725.1_00959
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	15235	18789	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	15236	18790	GCA_009378725_1_23_17	GCA_009378725_1_23_17	+	215967	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MIDTFKPKLDLPTKANFKTTLPLLGGADLSFWLALAAKSEERLIVVIANHQNELNQLDTELSFFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGVLLVSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQAGMNTHHAQKLPSSAKITEFRLLPAREFPLEEGKEMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQVLKAYPRVVINTNHDTAKIGAMESLPPPILPINHQAAKPLSELLSFIKSGQVPILLVAESAGRREIILELLKDKVAVKVVDNYQEFINNLDDFNTDCIALSVAPIERGLWLRDETGGLCIISETQIFGRQVLQTRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATNAIKQGKTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRTEMIDRFGTLPTQTQNLFAVHRIRIRAKALGITKIDATQTTISIEFRADTPIDGLAIIKLIQSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESTKTA*	common_virus_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0017	persistent	direct	high	3554	1.0	GCA_009378725.1_00960
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	18786	19055	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	18787	19056	GCA_009378725_1_23_18	GCA_009378725_1_23_18	-	215967	.	.	hypothetical protein	MPMSIPTKVTVGYTQRRLFMVSMTVGLISLSGCQHIQVTKSPIPIIIHSHTKSPSQPKPTPTDAVPTKNRPISPPTQKSNTIFILEDWF*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0018	persistent	ambiguous	low	5	0.019	GCA_009378725.1_00960
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	19055	20317	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	19056	20318	GCA_009378725_1_23_19	GCA_009378725_1_23_19	-	215967	.	TIGR02800	tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MKSPITKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLSLAGLGTTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTVNGSIITPTFSSDGLSIAYSVQTKNNLPIIYIVSVSGGTPKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGARRQSLYRYDFGTTHSTQIASYATNPRLSPDGSKLVYLSGGQIIIANTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRTIPTSGTVRDPIWSK*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0019	persistent	direct	high	1262	0.999	GCA_009378725.1_00961
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	20334	21128	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	20335	21129	GCA_009378725_1_23_20	GCA_009378725_1_23_20	-	215967	.	4G7X_B	Putative uncharacterized protein, TolA protein	MRLSDNHPTVNFDKSVLILPILASVLLHTVIIIAVAAPLITPPTKPNTTIQTALVGQEAFNRVKTALSNHHANQNKPTATNTSSTITANDNAFMQAQNQHRYHPQVSTSATTTQAYHPPPNSAPFESNSPNIQNQPTNAHAKLAEYSNHVSDLEQSNHTESTPSRAQINAAITSVKHRIEAIWQHYPKQPNQTITFQVNMNQQGDVTSIQFGGGHPDLRESVEAAVYAAAPFYELGGMRDSIRLQFTTEQLIMDNNQTTNEPNH*	hhsuite_tools	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0020	persistent	direct	high	794	0.999	GCA_009378725.1_00962
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	21159	21593	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	21160	21594	GCA_009378725_1_23_21	GCA_009378725_1_23_21	-	215967	.	TIGR02801	TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MVTSNRFARRQRPLNSDMNVVPYIDVMLVLLVIFIVTAPMLATGIEVSLPKEQTKPITQADKLPVIVSIQADGNLYVSHKNAIDVPITPDKLDTLLRQMHQDNTDLQVMVNADADNAYSRIMQIMALIQNVGITQVSLLSESVQ*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0021	persistent	direct	high	434	0.998	GCA_009378725.1_00963
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	21619	22308	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	21620	22309	GCA_009378725_1_23_22	GCA_009378725_1_23_22	-	215967	.	TIGR02796	TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MNESISLISLVIEASVVVKLVMAILLLLSTISWVLIFHLGTKIGGIAKFDKRFERWFWTDDIDHQLSVVQAESERAGLELIFYTGFYDQNHQDQDSSLSDDKKVQIVERRLRMALGSEQVHLEKGLSTLATIGSVSPYIGLFGTVWGIMNAFIGLGQAESVGLATVAPSIAEALIATALGLFAAIPATMAYNHFATKSNTLYENRSLFCEGLISALVTNLAKKNTASTL*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0022	persistent	direct	high	689	0.999	GCA_009378725.1_00964
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	22584	26756	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	22585	26757	GCA_009378725_1_23_23	GCA_009378725_1_23_23	+	215967	.	PDB:5XDR_A	Replicative-polyprotein	MHSTDNLPVLAKDRHYLNKLKQKMNSTTGDLKTKCKIRYDAIYERSAEQVANRMDSIPKNLSEKLNHDLPVTAEADTLIQAIRDHQVVIIAGETGSGKTTQLPKLAMMAGRGITGQIGHTQPRRLAARSVAMRIAEELGEPLGQTVSFKIRFTEEGGKHSIVKLMTDGILLAELGSDKFLANYDTIIIDEAHERSLNIDFIMGYLKRLLPKRPDLKVIITSATLDTQRFSDYFAANGKPAPVYIVEGRSYPVEVRYHPLTDTIVSSQDDDAFDDIEDNLPRALTAAVNECFEDARTKGHPDQADILIFAATEAEIRELQEVLMLYEPAHTEILPLFARQSYGEQQKIFAPSGKGRRIIIATNVAETALTVPNIRYVIDLGFARISRYNYRSRIQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEEDFNSRPEFTEPEILRTNLASVILQMERLQLGDVNAFDFITPPDLRLVNDGRKLLIELGALDDKSFTKTRTKKGRTQLSSLTKIGQQMAKMPIDPRLARMLVAGDTFDCLADILIIVSALAVQDVRERPINKHAQADQKHALFRKEDSDFLFYLELFAALFDQHSTNDNQALSSNARRNFAKKHYLSYARIREWQKTHRQLSEMMAEMGFEINKQKNHQNDVKIDTKKGVRLSLKSGTSHQKSIKQALVGAKALKNDIDNKTSIHYANIHRALLSALLSFVAHKTDTVGEYLMARSQKARIFPASTLHKKGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPNLLKYHYFEPHWSKKAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDALVANQYGMQMKFLADNANKIKDIERIEDKLRRRDLLVDEESLYQFYDAKIPNHIASRKSFEEFYHDAENKTPNFLHFSDEDVLNEAVDDSREFPESWHLGGVRLPLSYVFDPAADNDGVTVHVPIKALAQVDPVALLWGISGWRYELVLQLLKTLPKEIRRQIVPIPDTCQKIFHQLDASSKMGLLDQLVAALKTLGVQAHAQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARHRKASVQSIAIEQGVHHHFPNHFNFVKNKHTSGIVMQEFSALKADAAQSAVFIATFTEMNAALAEHKKGVLTLIKGHLGAKQKQLTGQIDKAFKLAFAPLGDLEKLKNIVVHATLEACLYDYGPDFDHKPVSQHVDHARAAIAGLITQNNQWLISHLPLDEREFDDCQDLILKNFLLVGQEILRNLKEIYTAWQTARGKLLMLDQEIFGENIEDIEDQLDDLQLANFVYQTDYRHWRQYPRYLQALNIRLDRLQHNLEADLDAVYLLDTHMERLARCVKNPKFAEYRWLVEEYRINLFAQPMKTVQPVSAKRLETLWANLTTQ*	common_virus_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0023	persistent	direct	high	4172	1.0	GCA_009378725.1_00965
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	27018	28514	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	27019	28515	GCA_009378725_1_23_24	GCA_009378725_1_23_24	+	215967	.	3PIK_A	Cation efflux system protein cusC	MPIKCQLVAIDNIIKPCYDKILNFVYFSTMKTPYFLLLGLLLAQQADADYSLLDAQKQLMSSSSAIQASHALYQADVLQAESLQKLHYPRISLNAHAFVLQQNSSIPLDHIKEQTAQHINTHFDHRFGSAPDGLLDALHDSTQTALDRLPDHQDVKLRHDGITPNITATMPIYTGGLISSSKNIANLQAQRGKFGLQERISLAKLNLIRHYFNVQLQKQLTDTQQNMLSAMQLHVDNAYKLEQQGFISRGQRMQFEVARNRVQRLYQSTQNQHQNSIYELAVLLGLPHIEPLSTPLFINTQHRPNWQALLKDSQNTPLNQKLKTDTQLADENIALRQSTKKPKIAAVARYTLDDKPDWFAGVAVSYNLFLGIDRDKQIEAAHLQKQAAQLGHEQVNEHITTTMHTAYGEMVLAQKTHALLQQNRQAAKENLRIQTLSFQEGFGTVAGVVDAQSALSQIDSETALNAYRYLLALATLLHHTGTIDDFDDYLSLDDAHKL*	hhsuite_tools	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0024	persistent	direct	high	1496	0.999	GCA_009378725.1_00966
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	28561	29724	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	28562	29725	GCA_009378725_1_23_25	GCA_009378725_1_23_25	+	215967	.	COG1566	Multidrug resistance efflux pump [Defense mechanisms]. 	MTDKTDDVKPDTDGNHPKKQKPHTQAKSKPRPLALFLLLALIGSVLLVIIFGLIQSYGTPQNLPTANAIGSTNEPPKGVIAHLRQKITGPATFSIQGRVEGETVNISTKLPSRVAAIYVKEGQAVRAGEPLVQLVSPEIDAKKQQAAAMLQSALAFQSSTDRGTRQENVDTLYANWQSAKAQATLAEESYRRGEYLYQEGVISRQRRDEMRAAKQSSAQIAHAAQQQYLKAQRGRTDELKSSADAQVQIARAAVAEADALDAETMLYAPIDGTVSKIYIQSSELVMPAVPVMSLLDNHPTITISIQENQYSHVHALPKLTGFIPALNKTTDFKIVHTDDEGEFATIKNTRQTGGYDIHSFKTKLEPITPIEGLKVGMSVIFDITVLP*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0025	persistent	direct	high	1163	0.999	GCA_009378725.1_00967
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	29752	30930	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	29753	30931	GCA_009378725_1_23_26	GCA_009378725_1_23_26	+	215967	.	PF12698.7	ABC-2 family transporter protein	MIVRFIRAFCQAFLRELNRLSCNRFDLAMVMIAPLVIIVLFGAMFYHGKAHHLPVALVDEDNSELSHLIYQHIHHNETIKTVLILDNVQDAHHAINRLDVGGYIHIPKDAQNHLVRGENTGIHIAYNQSFFSIGSAISSALSKSTKGGIAKFIQTKHLTGVLPHLSGNMPHVKISVLFNPNLSYEFFLEPFLVAAVLHLLLCCLVAHAIGQEFHEHSVHEWLCHSPFGALFGKISVYVLIISLWHGLWQAWLIGVRGWFVAGSLFVLIIGQLLFYLAYALFGAMVVLKTQNINKSYGILAVYGGSSMSFAGVTLPLNNAPSFTQFWSQIIPFTPFARLQVEQWVIGSPFIITLAHLNSLLIFVLIFAIGSLLLLRRINKTLIAMPNTPKDDS*	hhsuite_tools	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0026	persistent	direct	high	1178	0.999	GCA_009378725.1_00968
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	30930	32030	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	30931	32031	GCA_009378725_1_23_27	GCA_009378725_1_23_27	+	215967	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MRRFIKQYLTIWLDVIKDRSIFLTMVLSVVFYGFFYPFAYQAQRPADLPIVIVDEEQSPLTQAIIHTTSHTPNIHVLAVVSDFRQAQMLVQSAKADGILLLPDNLSQSIHHGQTGGVGLYLSSAYFLRTQNIGAGLVSSLQATIIQELGQVTQTRHKPMPELIHQSALFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGYRQRLWRASACDFLAIYAVALTIGCLSCFYLFGFVFWWHDYPRGGNFWGMMLGVPIFVSCAIGVALLIASWVADGAKVGVLLIFSSVPLFMLTGLAYPLMAMPKFLQPLAHALPTTQGVQMFIQLNQMGVSIQDVWQKMAYLASVAVLCLGVAFWRLRLVNKSV*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0027	persistent	direct	high	1100	0.999	GCA_009378725.1_00969
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	32354	32473	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	32355	32474	GCA_009378725_1_23_28	GCA_009378725_1_23_28	-	215967	.	PDB:2MXZ_A	L-alanyl-D-glutamate-peptidase-endolysin	MAQASGKLGVNVRWGGAWMVITGKAGTPQEWVKAYRAGG*	common_virus_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0028	.	unmatched_CDS	none	0	0	.
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	32665	32847	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	32666	32848	GCA_009378725_1_23_29	GCA_009378725_1_23_29	+	215967	.	COG1598	Predicted nuclease of the RNAse H fold, HicB family [Defense mechanisms]. 	MHYPVTLTPDTDGFCVTFRDIPEAISQGDTTDEALDMAQDALMVAMEFYFEDNRAVPMPS*	mmseqs_cdd	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0029	shell	direct	high	182	0.995	GCA_009378725.1_00970
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	32875	33078	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	32876	33079	GCA_009378725_1_23_30	GCA_009378725_1_23_30	+	215967	.	PFAM:PF15919.4	toxin-antitoxin-system-HicB-like	MPPSVWVKVLLLNEMIAQNVSQAELAKRMGIVPQSLTRLVDLSHTTKIDTLANAFAKLGKQLQVGLV*	phrogs_hmm	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0030	shell	ambiguous	low	20	0.098	GCA_009378725.1_00971
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	33058	33849	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	33059	33850	GCA_009378725_1_23_31	GCA_009378725_1_23_31	-	215967	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MRLTKTIKEAIHAHAKICYPAECCGLIIDGQYYPCDNVTPNPTEHFEIDPIDMFEMGEKGQIQAIVHSHPDGNAEPSEVDRVQMSIHGLDWVICAFGYHAGGEQYFDVKCHKPKAYQAPLLGREYHHGVQDCYSLVQDYYSRELDITLPSFARSDDWWENPNHEPLYENNFTKAGFIKMQDETDLQKHDVILCRVGRTHHVNHALIYVGDGKLKSETTPDCVGNALILHHPHGSLSVREIYGDNWQRRTAMVVRHQASNQTNL*	mmseqs_cdd	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0031	shell	direct	high	791	0.999	GCA_009378725.1_00971
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	34236	34439	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	34237	34440	GCA_009378725_1_23_32	GCA_009378725_1_23_32	+	215967	.	.	hypothetical protein	MADKASPQARKKATANYFDKSLARIGLVISHTEPHVLDALNQIMAHKDCSKAMAIKIALVEYAKTLD*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0032	shell	direct	high	203	0.995	GCA_009378725.1_00972
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	34436	35104	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	34437	35105	GCA_009378725_1_23_33	GCA_009378725_1_23_33	-	215967	.	PFAM:PF05100.11	minor-tail-protein-	MSFNTDIQQTTVQGFITLYELDARKLGGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGRASTPKLSIGDKINGIQGAVSALCRLYDDFARAKLTVTHTLQAYLDSHDAQNYRQQEWYIEQKVSENPSLGIVEFELSNPVDFEGQKIPVRQITTYCNEAVCGRYRGEICGYTGTARFTHDGKPTDDPTLDRCSGLLAHCKLRDNEGSFCGFPAAGLI*	hallmark_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0033	shell	direct	high	668	0.999	GCA_009378725.1_00973
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	35203	35595	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	35204	35596	GCA_009378725_1_23_34	GCA_009378725_1_23_34	-	215967	.	.	hypothetical protein	MSETTLTELSRTEATVLQSFIAQVDFWKNQHGDKAATIEVIYYPEDDGFEVSNNEPNNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTAFILSFKDNRYGVRAALASEATDKADDGAEQAEQDK*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0034	persistent	direct	high	392	0.997	GCA_009378725.1_00974
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	35699	36031	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	35700	36032	GCA_009378725_1_23_35	GCA_009378725_1_23_35	-	215967	.	PFAM:PF05939.12	minor-tail-protein	MKTFTWDISADSSETTALNTTITAFGDGYEQAVSFGINNSRKSWQCSKTDTKAVIDEILSFLLNTKGVEPFTFAPIKGEPAIKVRLDGEISRQKTGGDVWQIGFTLKQVF*	hallmark_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0035	shell	direct	high	332	0.997	GCA_009378725.1_00975
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	36134	39994	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	36135	39995	GCA_009378725_1_23_36	GCA_009378725_1_23_36	-	215967	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MLNTYRLDIQVNADSANTALGNLKEHFDKIEQSSGKAGVGIDGFSGKADKASKSSKKAGDEAKKAGDGAKKFGDDAKKAGNDIDGLKRKTDGLKTAFGTLKGVMFTALAVAGVGGIIATADDMQTLTSQIKIATTSTKDYAHAMSEIERIAMGNMVSLDSVGQLYASNERSLKQLGKSQDEVIKFTENITTAMRVSGGSAESQAAALTQLGQAMASGVLRGDEFNSIAEQAPVIMELMADSLGVTTGKLRDMAKQGKLTSKVVYDAIAGASASDKLAEKSKKMSTTISGAMQNIQTQWRLGVHAIMNGEGGLSSVLADGINSIALGASSFVDALPAINQAITDTIAKAKEMGTAFLESDFGQSAIQTAKDAFEQLKSAMQGVVDIAGDVKAFFEKNPELAIALASGVGAVAGAFLLFKGVLIVWAGVATLATVAGGALAAVMAVLTSPITLVIAAFAALVAAGVYVYRNWDTIKQKANDAWNSIKETWQGVGEWFGELWDKVKQTFFDWLSQMPKPVQDMVANIGEIFSTIVDVAGAVWDGIANIAKSVWHAITKFVSYAIDKIKPVIKSVLEFFKNAWDGLVSIAKTVWQAVVSVVSHVFDKISGIISTQFEVMKAIFMAGVTIFASIFNAGFEMVKTIFSTAFKVITAVLTGDMQGVKDAIKDGFQKAVDIFKKLVGNIVDALKKLGKDLLQVGRDAMQGFINGISEKIDAAVSKAKQMASSVKNAVTGFFDIHSPSRVMKQVGGWISEGLAIGIAYKAPIAAKEAKNLAKSVKNALESELQKTAEEIFLTKQHIKGNPYAQLTKDIAFGKYGKQDTSRLQKLAQEQILQSNILTLTQQLHEAQQNLANVGLTSIEIMQRQYDETDKSVRASLDLFEQVKKTSQELIDATNRHEATQAFESTLKDIKKQMAIMGSQDPLAEFLYDLQNAEKYAYYTTEQLATLTDEMIKLQAAKDAKQASDGIKESLKDINKQLALLGSNHPLDDFFYELEQTDKYAHATTDEINELTDAIFKLQDAKDKLNAKQAFDTLMKDTALADETPAQRLQREYDEKMAVIDRYEQMHSDKLENATSLRQQITERYEQAEKDAKVKNYQEHLTAFAGFLKNTAGEQSKAYRVMFAASKAYALADVGVKMGKAVADAWADPSAVTIWQKLANVAKVSLEQGHVLSMINAISPKGFATGGYTGNMGINQVAGVVHGQEYVLNAKATKRIGVGNLERLNRGDGIGGHVNHINVHVTVNSDGSNVQADTQMGKTMGEAMAKIARQVVIQESKQNGHLDRLYRR*	hallmark_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0036	shell	direct	high	3860	1.0	GCA_009378725.1_00976
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	40053	40889	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	40054	40890	GCA_009378725_1_23_37	GCA_009378725_1_23_37	-	215967	.	.	hypothetical protein	MAQESPTTESLFDFLYLDSIKIRSFYAQLTGFGSLASIKANNALNSSLASEGAFGVNAMAKIDAKVNYATGENQSSEKTYDATPTLPREMIDKLDELGFISRELGENSAGNLVLLNGVLSITDIETLQNLLEPTMHFATEEEYKQLYGDRKRQTVKKKLEENKPVVQLIKAIPYALEARLKVGEDMVWMTLNRGEMVGNPHDINLKHGKVLFGEYYVLGVLDAIPNDDMNIDMTTGSFGDVILELSQSLKETMGRNTSSYGITPIAIFRVIRTNQQAK*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0037	shell	direct	high	836	0.999	GCA_009378725.1_00977
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	40852	41034	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	40853	41035	GCA_009378725_1_23_38	GCA_009378725_1_23_38	-	215967	.	.	hypothetical protein	MQDNAKKSDATHHSAQLLRDMFSCLNQAMSRETEKFHQEQKKVKEEINHGARITNHRISL*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0038	shell	direct	high	182	0.995	GCA_009378725.1_00978
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	41192	42031	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	41193	42032	GCA_009378725_1_23_39	GCA_009378725_1_23_39	-	215967	.	PFAM:PF10547.8	P22_AR-protein	MSNISIFNFESTKQVRTAIRNGGDIWFCLPDVANVLEISRSSDLLQVAKPAFVKNETSSKRGALDPAGVHKMYISYESGKKQVTFINEPNLYRVIFRSNKAEAVKFQNWVFDEVLPTIRKTGQYRHTISVEQQAQISQAVARRCQSNRRHYQTIYSALHQKFNIPRYSELLASDFDTAMSFIRNYGFNNNGDNNGYEQLYIALTDSVTNIRKYLKLIKSLKGLPFMDENVAQKMYHDGQDTILRIAKIAQALDLQNTQGRPMFEPGRLNYYGGATLIYR*	common_virus_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0039	shell	direct	high	839	0.999	GCA_009378725.1_00979
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	42325	42963	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	42326	42964	GCA_009378725_1_23_40	GCA_009378725_1_23_40	-	215967	.	.	hypothetical protein	MKKLLKWFGIIFAVILGIGVIAVALETPEQKAEREAQAAEEKAQREAEYVAQIDDKEEVQPVNLGMTPQELGSGIDNIIKEISGVDPQLRSVSTNDNIYSVNLGEDIIWYGDLDKTGNIITSMYNVKISDNVEDRMMALLAFAIAKARTLSPDLPKEQVANSVAEVMSRAMKKFNQSLKPTTETQVIGDYKYIVNIYPDSKSMRFSVVHKDH*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0040	shell	direct	high	638	0.998	GCA_009378725.1_00981
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	43004	43930	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	43005	43931	GCA_009378725_1_23_41	GCA_009378725_1_23_41	-	215967	.	PFAM:PF05766.11	HNH-endonuclease	MSDFFWLMAFIGFCFVILIVGIGIVVYIFNSISTLIKHKPKSYSEYKELRRKDREIAQENIKKLAGYKERVMAICDKNFVSEDEIAELTNYINTNNLSSKQIDIYAHTAFKKHYAAIVSDNLLTDEEMESLTRVAKFLKPDKQLVKKELEELSRSVSLKKIQSGILPEAYTSAIILRRGEIAHFVIPAQLLEERVISRGYKGGSQGVSIRIAKGITYRVGQNRGKLVSEKGTIPVDSGDFVITNRRLIFTGTKKSFSYDYKKLLAWNVYSDGILLNIDNASSRMLSFSNNIDSDAIHLALAYLVDQNT*	phrogs_hmm	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0041	shell	direct	high	926	0.999	GCA_009378725.1_00982
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	43942	44490	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	43943	44491	GCA_009378725_1_23_42	GCA_009378725_1_23_42	-	215967	.	.	hypothetical protein	MKKLLIAGILSLSSLTVSAAQNDVQVDINKFINASNVVENPFHADSALEYRFVNADNLNVRDYPVTGNVVGQLSRGEQVGVYAVSDSWVQISSGYTDSKWVSAAYLCEGAGCFEKSTKNTKNQRTANQSNSGSQPKNTTTKKSSAPKRTYSDGLCPCSGSYNCTGPRGGQYCITSGGNKRYR*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0042	shell	direct	high	548	0.998	GCA_009378725.1_00983
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	44856	45317	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	44857	45318	GCA_009378725_1_23_43	GCA_009378725_1_23_43	-	215967	.	.	hypothetical protein	MAFDLTLLKKDAKMSAKREIEFDGLELTLEIQVSEEFKRAAAEVQKIANTPKKVTKDSLKRGNQDEIGEYEAMLFILGEYCISQWNVTADGEPLAINGDNFLILLDQGFEKDKLTQFITLLFETYASLSQEFEDNKAKLVKKSTTATNGKKSG*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0043	shell	direct	high	461	0.998	GCA_009378725.1_00984
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	45368	45514	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	45369	45515	GCA_009378725_1_23_44	GCA_009378725_1_23_44	-	215967	.	.	hypothetical protein	MEYITIIVDFMKYLIEKHGLFVIWLMVASLITLYKLDMILTAVHLFFN*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0044	shell	direct	high	146	0.993	GCA_009378725.1_00985
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	45597	46505	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	45598	46506	GCA_009378725_1_23_45	GCA_009378725_1_23_45	-	215967	.	PDB:5NGJ_B	Tail-tube-protein	MSSGAFVKTAYAKQTGETLPKTGWKTLPNISNGLTVATELTNSEMLSGSRMAKAGMVTSASVQGDIETELMFGAYDELLAAAFWSEWSAGASPNTLSVGATKHQFAIAKDFSDINVNHVFTGCVVSSFGLSVDTSSLIKLKFGMTGLGYQESKTTSFAKTPTAQADTAKASGLSIGEIKVNGTKLDVCVESFSFELDNQTEVQKCLGDNIYGGNILAMLTNITGSMTIAYSQKAHEMISNQMTGTTLSLELPIKFGNSKYVIKIPKFQVSGEIPSPSGTDLVTVDLSYTVVDESPVIEKHTA*	hallmark_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0045	shell	direct	high	908	0.999	GCA_009378725.1_00986
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	46509	46697	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	46510	46698	GCA_009378725_1_23_46	GCA_009378725_1_23_46	-	215967	.	.	hypothetical protein	MPKNRHRRLLQLYGEINELGAILDAPKPKDIHPHEWILMKDQLYYMRQYYRVLKQRTDDTEN*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0046	shell	direct	high	188	0.995	GCA_009378725.1_00987
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	46697	47080	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	46698	47081	GCA_009378725_1_23_47	GCA_009378725_1_23_47	-	215967	.	PDB:2L25_A	tail-completion-protein	MNSFHIEQTLLTHIKSWEHFDDIPLAKENRNFKPPDGIWGRVTILGGINQVRSISDKPDILQQGTLVIQLFCPQDLGTVAIKQKADSLANHLQTRRFGRLETLTASIINAGFHDYYQINVSVAWRYY*	hallmark_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0047	shell	direct	high	383	0.997	GCA_009378725.1_00988
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	47451	47651	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	47452	47652	GCA_009378725_1_23_48	GCA_009378725_1_23_48	+	215967	.	PFAM:PF16777.4	transcriptional-regulator	MPKITSTPKSQTQRTADSDAKRGFKTKGLKLHIDDISLIENLSKRLNIPQNQLIMDAVRAYQRQLD*	phrogs_hmm	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0048	shell	direct	high	200	0.995	GCA_009378725.1_00989
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	47648	47995	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	47649	47996	GCA_009378725_1_23_49	GCA_009378725_1_23_49	-	215967	.	PFAM:PF04883.11	tail-component	MGIKWNKKLSIDPIADEIDKTYRKFAIDCYNNVIALSPVRKGRYKNAHHISIGSPSYAETGGGIELVLGLPKHTYPLIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSAIANLG*	hallmark_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0049	persistent	direct	high	347	0.997	GCA_009378725.1_00990
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	47995	48351	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	47996	48352	GCA_009378725_1_23_50	GCA_009378725_1_23_50	-	215967	.	PFAM:PF12206.7	head-closure-Hc1	MGLKAEISTEITQAFDTDLKDAVKDFTAKRVILSDDDWAVNDTQVLSTINYSGRGVFTSFSAHEIDNQTIMQSDVKLICLQDELTEIPQIDDEINEMKIISISHDPAEVSFTIQLRGF*	phrogs_hmm	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0050	persistent	direct	high	356	0.997	GCA_009378725.1_00991
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	48353	48712	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	48354	48713	GCA_009378725_1_23_51	GCA_009378725_1_23_51	-	215967	.	CDD:cd08053	Head-Tail-Connector-Protein	MITLDDLTDIDKADEQTVVIVNAWLNKHKIRAFDKTPDPIRQAGRYIAKAWLDGDLFATRTEGQVISKSSKAGDVSVSKTYADGQMGQAMSQNEQIALALIEPYLQQPLGMFGLPLVRV*	hallmark_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0051	shell	direct	high	359	0.997	GCA_009378725.1_00992
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	48773	48976	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	48774	48977	GCA_009378725_1_23_52	GCA_009378725_1_23_52	-	215967	.	.	hypothetical protein	MSLPKDKVKPAFNFTYPSERAYFDESKSTLANAQVTDPAKSGADYGIKDPQVTEALTGTKSETAKVE*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0052	shell	direct	high	203	0.995	GCA_009378725.1_00993
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	48987	50003	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	48988	50004	GCA_009378725_1_23_53	GCA_009378725_1_23_53	-	215967	.	PDB:6R3A_A	Major-Capsid-Protein	MAKLREIFNKNVTLSYQVKDNLQRSKFWQSGAFVSDARLRPLLNSGSLTFDVPFIHPIDGNLEANYSNTIMTDIAMPRSIEGSKSKGRLALLNEGFIESRLESYLLGQSPLKLMAQMIDDYWLTQAENRAIATLFGLLNYDQSNGKKLSTDISKATADDSSGFDVHAFIDAEGTMDEMYQGKGLMVVHPLIATKMRKQRLLERVTTADDLKPIETYNGRRLIQSKRATVIGTGKNAKYVSYLLGAGAFAADMVAGHDDLELERTANTGNGSGHTTLWTRRNMLIHPQGFSFIAESSTLTGGTKNEALSPSWTDLTTAANWRLDHNAEATAIRFLITNL*	hallmark_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0053	shell	direct	high	1016	0.999	GCA_009378725.1_00994
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	50006	50656	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	50007	50657	GCA_009378725_1_23_54	GCA_009378725_1_23_54	-	215967	.	PFAM:PF06810.10	minor-structural-protein-	MNLEELLKSLGLDDEAIGKVVEATKPDQAQAEEIERLRKHNETLLGEKKAESEKRRAEQAEKERLAEETARKKGDFETLEKQYQAKIQELNEQIAKRDKERDENLVKSHAQKLSSQLSDNPANQEILQILIEKRLSAKDGQLSVLDDSGAVSIMTLDDLAKQMQNCGKYDSLIIGTKSCGTGSNGQSAKRAGDYSEQERLALANSNPALFNQLFLE*	hallmark_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0054	shell	direct	high	650	0.998	GCA_009378725.1_00995
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	50875	52629	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	50876	52630	GCA_009378725_1_23_55	GCA_009378725_1_23_55	-	215967	.	PFAM:PF06152.10	minor-capsid-protein	MKHLINLERFKVHLANKFKTTLNEIDEFLQLVVFRHEISELNYKEFELLIGESKQKLLGFLAGYALELTQDWQELYDYSYTLETKMIDDDKPDTLNMNEPQFDADSPIKLSAQVGVTLNQILAKFGDEQSTKISNAISYAYANGLPNQELVRIIRGTRKNRYQDGILVITTRHAKTIAHTGTAIVASQAKQQFIHDNKDIIKGIKVIATLDLRTSGICRHLDGEIMPIDKAVYPPYHYNCRTSFEIVYDGYQTPKQRASMDGVVKNQSYYEWLKNQPAQYQDEVLGKTRAKLFRDGGMTVERFRALQLDKHFTPLTLEQMRALEPKAFDKAFAAVVKLDNTKDRVLAVKRTDWGDLPNVMIAHAKDTITTHKHYQKAKSGELSSALFLVDEYLTDDFVLKLHHTIKGYDNVRIVPVHAEEQLGRNKIPMAYALALSEMLGVDMDLGIVQAKRAYRTSSDGVGRLLKRVSFDGVVLSGHHYMIVDDVITQGGTLADLRGFIESKGGKVILASTLNGKPNSAKLPITKATLGQLRKQAGKEIEQWWQEQFGYDFSQFTESEARYLAKQIHRYGIDAIRDILFASRP*	hallmark_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0055	shell	direct	high	1754	0.999	GCA_009378725.1_00996
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	53002	53298	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	53003	53299	GCA_009378725_1_23_56	GCA_009378725_1_23_56	-	215967	.	.	hypothetical protein	MNEFIIPNSNSVSNDFNYSRTDLDAQEQQIAEFIKKGGKVINLDNSEQPKKKSAKKRDFNNQRINSKMHLVLCYLKRSGKRMTGLQIQEKRHIGNNFR*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0056	shell	direct	high	296	0.997	GCA_009378725.1_00997
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	53384	53623	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	53385	53624	GCA_009378725_1_23_57	GCA_009378725_1_23_57	-	215967	.	PFAM:PF10078.8	transcriptional-repressor	MQIVELRNYLLSMNKQDRIEFAKKCGTTYGQMMQIYRGNRTCHPTLAIEIDKHSKGCVKCDVLSPDTDFNYVRANSESV*	phrogs_hmm	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0057	shell	direct	high	239	0.996	GCA_009378725.1_00998
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	53749	54471	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	53750	54472	GCA_009378725_1_23_58	GCA_009378725_1_23_58	+	215967	.	PDB:2FJR_A	Repressor-protein-CI	MTPEVRLKNLTLVLEKIEKEKGLNSFAKIAKEYDLNASYLSQLMNGNRQIGERSARSLEKKLKLEKFSLDNCPLQSNINPDFESITEWDNGAPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMGRRTLSNLGVMPINAYAVTACDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVSRLERW*	common_virus_hmm	common_virus	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0058	shell	direct	high	722	0.999	GCA_009378725.1_00999
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	54523	55419	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	54524	55420	GCA_009378725_1_23_59	GCA_009378725_1_23_59	+	215967	.	PF14337.6	Domain of unknown function (DUF4393)	MTAETFHLIPAITGAVSGAASVGLLNGPLQTLQDIWFVVYGHKWHYKVESIKAQQAMNIQAMQNNIQTGIEKIPANALKDPNVAIIGPALEASRFHMNEENIREMFANLIVSAMDERKDGQVHHAFVEIIKSLSPLDAKNLEYLSQSGDAPIVNIVKEASYGFHMLHQHVFLGNRQVLDPNLITPSIDNLARLKLIDVTYTEHLTHEPVYDPFYHSALYQEKVSALGKELKLRRLDISKLQDLTRPVELDGKVLNKDERTEQIELINKELESKIEIQKGIIKLTAFGKNFLSVCSPTT*	hhsuite_tools	nonviral_gene	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0059	shell	direct	high	896	0.999	GCA_009378725.1_01000
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	55437	55655	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	55438	55656	GCA_009378725_1_23_60	GCA_009378725_1_23_60	-	215967	.	.	hypothetical protein	MALAINIVLGANTVHFSRNIQKATQNAKKYLQGFALLAYMQAADKDKSVQDFLIIDPNPMTDEQKKPLLSAL*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0060	shell	direct	high	218	0.995	GCA_009378725.1_01001
GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote	cenote	CDS	55718	56104	GCA_009378725.1	NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725.1_NXCQ01000003.1	GCA_009378725.1|NXCQ01000003.1	GCA_009378725_1_23	GCA_009378725_1_23@C0	55719	56105	GCA_009378725_1_23_61	GCA_009378725_1_23_61	-	215967	.	.	hypothetical protein	MFGIKLLHSDDFIKSASSFGCFLAIMDKQTNKNHVYNLSTQVQRFELIDIDQVANLANSVQNGAISATVGTLLVRAGVLPALVALSIGAGLPNRTKDAYVCHIEFDDSKSAILQLSKHKYQQFLKHIA*	.	hypothetical_protein	C0	56105	0	56105	GCA_009378725.1|NXCQ01000003.1@region_1_56105@tool_cenote_CDS_0061	shell	direct	high	386	0.997	GCA_009378725.1_01002