core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	301292	301489	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	1	198	GCA_009378755_1_4_279	GCA_009378755_1_4_279	-	680235	.	NF033499	excisionase Xis. Members of this family are excisionases such as Xis from the Gifsy-1 prophage of Salmonella enterica subsp. enterica serovar Typhimurium str. LT2.	MKKYLTSNEICEIFGICKMTLNRWEKRYPHGEPFPRPVMGGGLGGGVKRYLSQEVHTWELKHTAK*	mmseqs_cdd	nonviral_gene	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0001	shell	direct	high	197	0.995	GCA_009378755.1_00301
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	301568	302041	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	277	750	GCA_009378755_1_4_280	GCA_009378755_1_4_280	-	680235	.	.	hypothetical protein	MIKQTTFKAGDLVYYPNRGTEIYKLQESNILGFPLEIKQGTTCTLFCSDGKANPFGDMTQLFHATENNCHLLSKLYGIEFEKPRTRQVVEHLLKTHEYVACYTSDSNETPSPDDVKKFITHIHNGATLPFVDDECNMWRYAIPFDIKTGEVITEIEE*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0002	shell	direct	high	473	0.998	GCA_009378755.1_00302
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	302232	303896	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	941	2605	GCA_009378755_1_4_281	GCA_009378755_1_4_281	-	680235	.	PDB:1RIF_B	DNA-helicase	MYKLRDYQARVKHELYAWFGKHQKGFPIIDACVGAGKSIIIADLCKDMIEKAPDTRIIMCVASRELCEQNMQKLLAIWPDAPAGICSAALGSKDTDSQIIFATIGTLARRVDELGTVDVMIIDECHNINTANTGMYRKMIETLQDTTSPHMAVIGFTGTPFRGNGVWLWQGKDPIFEGVASRVTMDELLKLGYLAPLVVEPMEAKIDTADVKITAGDYNSKQLSELLDNKDLARACVDDLYIRGQGRKKWLIFCHSIEHANLVLNEVRSFDVTAEMVIGETPSDSREKILKAYKLPHDHSDAINILVNVGVLTTGFDAPMIDLIALLRPTKSPVLYVQMAGRGMRIAEGKTNCLWLDYTSTTYELGPVNTIRGRNASQKGETAKGEPCKHCSNCGEKNPVYMSECLSCGEPFSPNQSEKAVGNQSGNAEIIDDGNAKWANVTGLGYVRHTSRKSGKSTCVLIITPIYKYIQSVNIFVSSMKAMHLIKHIGGGVSIILDPYQQVLMTHYIYYMQAISIVQQKLKSNEMASFGKSLDENLAKLVRFIAFRPSKHSP*	rep_hall_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0003	shell	direct	high	1664	0.999	GCA_009378755.1_00303
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	303883	304839	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	2592	3548	GCA_009378755_1_4_282	GCA_009378755_1_4_282	-	680235	.	PDB:3SZ4_A	Exonuclease	MTDISQYTIDPTVSAIYKHYQLSRFEGARTYLGASIIGKTCSRALWMDFRQVKAKMFDGRLYRLFETGHLAEPRFIQNLRDVGVTVFDVDASTGEQWGVSFCGDHFRGHADGVAIGIKGVEKTWHLLEFKTHSEKSFNELKQKGVKTAKPMHYDQMQVYMHGLELTRAYYMAVNKNTDELYAERIKYEANHAKSLIERASRIIYADVPDAPLSDKPSWYECRWCEYQSFCYAGDWELPDVNCRTCIHSTPIADAAWQCERTTPATLINTAKPCEHHRFIPHILPNLEFEHYADDKVFYRDRSGLVHINQSKGSFDVQA*	common_virus_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0004	shell	direct	high	956	0.999	GCA_009378755.1_00304
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	304836	305042	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	3545	3751	GCA_009378755_1_4_283	GCA_009378755_1_4_283	-	680235	.	.	hypothetical protein	MGNPIKLAKSLLGKERILIKEIEGKVNNVRLVDEILQKNGYRKFFGSTSQFKGWIINSKYLLCTEYVS*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0005	shell	direct	high	206	0.995	GCA_009378755.1_00305
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	305044	305520	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	3753	4229	GCA_009378755_1_4_284	GCA_009378755_1_4_284	-	680235	.	PFAM:PF05037.12	single-strand-DNA-binding-protein	MATLNFGFTQEEVQAAQNDSYAALPAGNYVAQVERSEVKQTKDGTGSYLSLGFKVMDGDYAGRVLFGNITLTNKNSQAQEIGRKQLIKLSTACGLGHLQDSEQLHGIPVMIKVSDSRVYEGEKQNDIKDYKPVQQIQQSGFVQSPPSQTASNKPWVRG*	phrogs_hmm	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0006	shell	direct	high	476	0.998	GCA_009378755.1_00306
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	305523	306206	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	4232	4915	GCA_009378755_1_4_285	GCA_009378755_1_4_285	-	680235	.	PFAM:PF13479.5	AAA-domain-protein	MAIKLTNTKEATAKNGIKVCVYGQAGAGKTMLCATTPNLEKTIIISAEAGLLSIAEADIDVIEIKSLQDLQDAYKWLTEDPQGLSYEWICLDSISEIAEVILNDAKRNSKDPRNAYGEMQEKVETAIRAFRDLPRNVYFSAKMESYQDDVGVVRYQPMLPGKRLPAGLAYFFDEVFLLKVEKDSDGNPIRWLQTQPDTKYHAKDRSGKLSIQEPADLSIIQQKILGV*	common_virus_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0007	shell	direct	high	683	0.999	GCA_009378755.1_00307
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	306196	306582	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	4905	5291	GCA_009378755_1_4_286	GCA_009378755_1_4_286	-	680235	.	.	hypothetical protein	MTIKELATQWLDAKRAEQQAAAKRLEIERDLIKHVGVTNEGVVTYQGDVFTVKTTGKLTRTLDDAAVARHWDSLAAEVQACIKWKPALDLKNFRALESMRDDLAPVLHQYLTVKPAKPSISVEFNNGN*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0008	shell	direct	high	386	0.997	GCA_009378755.1_00308
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	306572	306751	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	5281	5460	GCA_009378755_1_4_287	GCA_009378755_1_4_287	-	680235	.	.	hypothetical protein	MRSTIQTVIFIVIMMFMLKGCLYAFDHECQIQEELGRQYYEEYTNLKQKNQTKGVFYDN*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0009	shell	direct	high	179	0.994	GCA_009378755.1_00309
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	307055	307621	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	5764	6330	GCA_009378755_1_4_288	GCA_009378755_1_4_288	-	680235	.	.	hypothetical protein	MIWTIFKPFNYLTIKAESGSKIVVDIYVPFVLSLIITIFLLFLNIKHNINIFDSTHKTTANIIGFVQTLPGFYIAALAAIISFPNQSLDKYMSNPAMIIQREYEDRLTRRRLLCYLLAYLAFIGVVICLLIIFVEFCYSFSLGFHPWLITIGYLIISFILFFFLFQLVLLTFTCLWYLGERIHFNDPD*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0010	cloud	direct	high	566	0.998	GCA_009378755.1_00310
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	307628	308611	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	6337	7320	GCA_009378755_1_4_289	GCA_009378755_1_4_289	-	680235	.	.	hypothetical protein	MRKTSIITYHVLVMDIMPTAKKNPVKPLTNISILDIFAHLKQWGYESEKRLFNNHSHCGVLPVITINEKQGRIDILLCLSDKDSDDPETFDFKTNEVRHFDKTDSEGYNGRSHIVIQVNENDPRSAKFAIEYKQGISPRFFVDTLNYFIKDARSKNKDIFKGIHPTERDNKGNAKKVGFKIKFTSQTEFSDEIIKAFESDRVQDVIYHQPIHTSSYDGTSYTPKRQDVHMGVKANIIQSGSKTLMQKTRDVISSFEKLLVKNPGLKGITFTIKFKNKEGKNRTAYYHSDTHEFSLAKKSFIRRQNKNPKELALNQALCDRMYAHLAS*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0011	cloud	direct	high	983	0.999	GCA_009378755.1_00311
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	308803	309510	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	7512	8219	GCA_009378755_1_4_290	GCA_009378755_1_4_290	-	680235	.	PDB:2FJR_A	Repressor-protein-CI	MQDFSIRLNQAMSAKNLSLRDLSEKTGINYEMVRRYSKGQAKPRNDKMKLLAQCLGVPITWLDYGEGEMVIEPQNTTLSQRVLKLVPDFAPDGSFIYKPHLYEVNLNTVICRQILDDSMDTFFKRGDFVFADTTVKPETGGYVIAQLEDNSEVVRRYKEYQDSTLGILQKELIVEDKEHFSDIKFSDSPFEIIGTIFEHKRFLGAGLKRLGHMAAENELAYLITQELERQKNTSD*	common_virus_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0012	cloud	direct	high	707	0.999	GCA_009378755.1_00312
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	309638	309868	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	8347	8577	GCA_009378755_1_4_291	GCA_009378755_1_4_291	+	680235	.	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription]. 	MTALDKAIAILGNRSTLARSLGITPWALSKWDKNNPPRDRCLAIEQATGGKVKAEDLRPDINWEYVREQQKTPSSN*	mmseqs_cdd	nonviral_gene	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0013	shell	direct	high	230	0.996	GCA_009378755.1_00313
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	309907	312390	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	8616	11099	GCA_009378755_1_4_292	GCA_009378755_1_4_292	+	680235	.	PFAM:PF08273.11	primase-helicase	MNDYMISQRFKRFQEVLLSDDVITFQTFSDNADNKDISLTCQLHGRFDDVQDNLHALNNRGAGIYFTANKTDGKGRKRENITAVRSLFVDFDIPDSERVARLMALDLPPTLIVESSKDKHHAYWVADGIALDDFTACQKQLISFFTAQGDAPDKAIHDLARVMRLPGFIHQKTKNGVTTDAFTSRVVYVGKRYDKVDLMAWLATMDVVVEQNTPLFQASQKTSYTHTGSASDYVRQQANGRWQYVLARLGYDVGDGRHKPCPHCGGRDRFRFDNHNIQAGDGGWICSQGTGETVGGDGLSFLMDHVGMQPKDALNAVADALGVDLPDERDSVNIDEFISNSQKTDETEADSEPVIPVLDNYKTRQTPSELFHLPINPDIDRELTEFIQSHNEQAPAEMILIAKLAILNTLAGRRYLSESNNPTTMNYMVLAGTGAGKNIIRNSIEALLRACNFDHLLSGSGSTSSSAVISSLMTAPNQIQIIDEFGQALKAARASNNNFAKESYAALMEVYGNYNSSIRAKNYSNLADKKKREQTEPPVEVLCPHITLVTMATPMQVINAINTEDLENGFLNRFTVVYVNDKEMSDDDLDNFCITRQKMPKTPSIQLINFCQALRNGDTGNLSGYTIDVYNERPEFKIINWHTEAEDYVNEYYRTIKRQQKESQDEIYNALAQRRVEQMMRLATTLAAADSVSKDTPPVTEPKHVIYAIGFIEYFGLMAHEFFRENLSDNQFTQLRQIILDSLLGIKNKADAERGLTMRELGRMNALFAKTPLHFRAPVIQTMLADGDLLYVEIKAKFGRGGSRARNAFILPQHFNESVMKPIAFKY*	rep_hall_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0014	shell	direct	high	2483	1.0	GCA_009378755.1_00314
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	312624	312965	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	11333	11674	GCA_009378755_1_4_293	GCA_009378755_1_4_293	+	680235	.	PFAM:PF06356.10	Endonuclease	MSKYKNKKTVFDNITFDSKKEAERYKVLKSMQADGLINNLECQPKFMLIPSQYFETIGRRERGVDYVADFRYKDNLGQIIVEDVKSAITAKDKVYRIKRKMVKYFHDVEIIEV*	common_virus_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0015	shell	direct	high	341	0.997	GCA_009378755.1_00315
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	312962	313147	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	11671	11856	GCA_009378755_1_4_294	GCA_009378755_1_4_294	+	680235	.	.	hypothetical protein	MRYYYNPSTDQYAKVLGEDANSNFVTVVIDDKKQVMDWDEFVSQFNQLRDVYEDSNTNQQR*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0016	shell	direct	high	185	0.995	GCA_009378755.1_00316
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	313116	313397	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	11825	12106	GCA_009378755_1_4_295	GCA_009378755_1_4_295	+	680235	.	PFAM:PF11753.7	nucelotide-kinase	MKTATQISRDEQMMNELKQTENDAVNHPKHYISDPSGIECIQITRHRNFNIGNAIKYLWRAGLKDGNSDIQDLQKAVWYIQDEIERLEKLKGV*	common_virus_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0017	shell	direct	high	281	0.996	GCA_009378755.1_00317
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	313397	313774	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	12106	12483	GCA_009378755_1_4_296	GCA_009378755_1_4_296	+	680235	.	PFAM:PF06530.11	anti-termination-protein-Q-like	MSNEKLEAYKKEFVEWGRWVRCDPNRLSYPSPWFEMIMRDNIPCSSVSPNITDDRAMAIDKAVCALARYSVLQYQVFCMRYLLGYSERIIADLADERILRNRRNRVKQELDKAGGFIYGFLENNT*	phrogs_hmm	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0018	shell	direct	high	377	0.997	GCA_009378755.1_00318
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	314444	314734	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	13153	13443	GCA_009378755_1_4_297	GCA_009378755_1_4_297	+	680235	.	PDB:5H0M_A	HNH-endonuclease	MKGYCDEHAHLRHGWQHNKSASERGYGSQWKRLRLQVLKRDKYLCQMCKADARYTHATDVDHIILKAKGGTDNMANLQSLCSSCHKIKTAQDERGG*	common_virus_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0019	.	unmatched_CDS	none	0	0	.
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	314840	315295	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	13549	14004	GCA_009378755_1_4_298	GCA_009378755_1_4_298	+	680235	.	PFAM:PF05119.11	Small-Terminase	MKGRKPKPTAIKELTGNPGKRALNKNEPKFAQITEIEPPVWMTSTAVTMWCTVMPELLATGVLTVADVHNVEAFCMSYSRWREAEQEVERYGLVIMDDNGKLNKNPALTIINEAKTQMMKFGSLLGLDPSSRTRLTGAANSEPIANPFADL*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0020	shell	direct	high	455	0.998	GCA_009378755.1_00320
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	315292	316986	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	14001	15695	GCA_009378755_1_4_299	GCA_009378755_1_4_299	+	680235	.	PFAM:PF03354.14	Large-Terminase	MTYPNVQKALDYIHAVLSGEIIANKYIKLACQKHLDELKNSETNPDYPYFFDPAKAEKVAKFIQLLPHTKGKWASKGEKIALESWQIFACCLPFGWIKRATGFRRYTKILIFVCRKNGKSAIAAGIGNYMFCADGEFGAEVYSGATTEKQAWEVFRPAKIMVERTKALKDFYGIEVNASNMARLADGSRFEPIIGKPGDGSSPSCAIIDEYHEHKNNDLYDTMETGMGAREQPIMLVITTAGSSIGGACHQMVRDAEKMLDGVMDIPDLWAVLYGMDKDDDWTSEIALKKANPNMDISVSAEFLQARRRDAKMSAAKQAIFRTKHLNEWVGAKNAWLNMAKWANAPERLPLSALTGRPCFIGLDLATKIDMVALILLFPPTADDLNYHVHGRYYLPDVRVLEELDSNTERYRAWDADSLLTLTMGEVVDFDAIKDDLREFYGRFDVQEVAYDPWQATQLAQEMEKEGMVMVELRHTVQNMSEPMKELEALVLQKRLAHGDCPILTWQASNVVATLDKKDNIYPNKERAENKIDGMVALIMALSRAIVHTDTGNVDEFFDNMIIA*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0021	shell	direct	high	1694	0.999	GCA_009378755.1_00321
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	317067	317516	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	15776	16225	GCA_009378755_1_4_300	GCA_009378755_1_4_300	+	680235	.	PDB:1G60_B	Adenine-specific-DNA-methyltransferase	MDIQLQQGDCLELLKTLPDNSVDMVLTDPPYGVLDFKWDNEIDNEKLWQELKRVIKPNCIIALFGIEPFSTQVRLSNIKNYKYDWYWKKSAVGGFINAKKRPLKTLENIMVFSDGVPRYYPQGLVRLDKKSPERQRSSQREAGEGRCVV*	common_virus_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0022	shell	direct	high	449	0.998	GCA_009378755.1_00322
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	317509	317829	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	16218	16538	GCA_009378755_1_4_301	GCA_009378755_1_4_301	+	680235	.	PDB:1Z6A_A	Helicase-of-the-snf2-family	MYSCNSKASEYIQEFTNYPRHILEFGNSNSTERGLHPTQKPVDLLEYLIKTYTNKGETVLDFTMGSGSTGVACVNTGRKFIGFELDDYYFGVACDRINRHRVLKDE*	rep_hall_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0023	cloud	direct	high	320	0.997	GCA_009378755.1_00323
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	317822	319033	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	16531	17742	GCA_009378755_1_4_302	GCA_009378755_1_4_302	+	680235	.	PDB:8CEZ_K	Portal-Protein	MNDENWWSRFYARLFGGGKRLDKGSEVAPFNSMHMPSGTAVTAETALKLSAVWACVRLRSQTIASLPLHLKSDSKELATDHHLYRILHDSPNADMTASEFWESVIVSLDLWGNAYVYITRLGGRVVSLDILDPSITVVKRNRDGDISYKVGEDIFGAEDVLHIKGFTMDGLVGLSPIRYQAGVMGAQIDANNAASHTFGNNLKAGGFLQTDNILNSEQRQKLRGNLEYFSKPENAGKYMVLEAGMSVSSSGVKMNPSDAQLLETRYFGIEEICRAFGVPPQLIGHTDKASSWASSLEGMNLGFLTYSLRPTLERIEQAIRKKLLNPSERSQYSPKFSVEGLLRADSQGRANFYTTMLQNGVMTRNEVRALEDLPPMSGGDSLTVQLNLTPLEKLGQDHENQIN*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0024	shell	direct	high	1211	0.999	GCA_009378755.1_00324
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	319014	319664	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	17723	18373	GCA_009378755_1_4_303	GCA_009378755_1_4_303	+	680235	.	PFAM:PF04586.16	prohead-serine-protease	MKTKSINFEPSIVKDDGFFSGYCNVFDVVDSYGDSVQKGAFVKSLAKFETRSKMPPILWQHDRAQPIGVWTALKEDEHGLYGEGKLLIDDVPKAREAHALIKAGVIDGLSIGYRVEQADYDNTKEGLLLKELDLFEISIVTFPANDASTVTVVKSALAQGQLPTLSEFEKFLRDAGFSKSQATAIASHGLRQLLGEPAELKDALQIIKSITGDINV*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0025	shell	direct	high	650	0.998	GCA_009378755.1_00325
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	319657	320838	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	18366	19547	GCA_009378755_1_4_304	GCA_009378755_1_4_304	+	680235	.	PDB:3QPR_G	Major-Capsid-Protein	MSDMTKQLATELAKATDYVKGLGEELTGRLEKGEGSLSTLKGDVDEALKSMGDVKARLDAVEQKQARRAQNQEPEKSLGERLFESDAFKQFADNPTAGNRAKLNVKATITSATTDTSGAAGALVQTQRLGGIVAPPDQRLRVRDLLMQGTTDSNALEYVRETGFTNSAAAQQNEGDKKAQSHIKFDTQSVSVRTLAHYVKASRQILDDASALASYINGRLMYGLKLVEDRQLLNGDGENGNLKGIIPQATAFADKATLSTYTIIDQLRLAQLQAVLAEYPASGIVLNPIDWAKIELEKDADNRHIIGLPQGTANRTLWGVPVVETTAMGTGKFLTGAFNLGAQIFDRQQAAIAVATENEDDFVRNLVTILCEERLALAVYRPEAFIYGDLVAK*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0026	shell	direct	high	1181	0.999	GCA_009378755.1_00326
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	321058	321303	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	19767	20012	GCA_009378755_1_4_305	GCA_009378755_1_4_305	+	680235	.	.	hypothetical protein	MVVIMEYEVLKQHYGDKQYYEGDIRQLDDDFTAKRLIEFGLIGKAHANKKVQSKAKKVPSNKAEPVLENKDDDSDDTEDNT*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0027	shell	direct	moderate	233	0.947	GCA_009378755.1_00327
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	321281	321568	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	19990	20277	GCA_009378755_1_4_306	GCA_009378755_1_4_306	+	680235	.	PFAM:3JVO_G	Head-Tail-Connector-protein	MTQKITLEMVKHQCRIDHDDEDDLLMHYLNAALIHASNYIDGLLDESNLAVQQAVLLLVGHWYDNREAVNNDYQTPQSIPFGFEALLQPYRNLGV*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0028	shell	direct	high	287	0.997	GCA_009378755.1_00328
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	321568	321906	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	20277	20615	GCA_009378755_1_4_307	GCA_009378755_1_4_307	+	680235	.	PDB:2KZ4_A	Head-tail-adaptor	MQAGKLKDRVSFMQHLQSRSQTGAPKRTWSVIDTVWGQFTPVSAKDVIAGKAAGVEILARLKIRYRDDIKRNMRVVCRGKTYDIIGEPLADNKSGREYLTLLLQGAGDESER*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0029	shell	direct	high	338	0.997	GCA_009378755.1_00329
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	321890	322408	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	20599	21117	GCA_009378755_1_4_308	GCA_009378755_1_4_308	+	680235	.	.	hypothetical protein	MKVSVKIEGLKELDEQLGKIDKEFRGKSLYESLNFASQPMLNAARRGARVAEKRYRWYMSHGQGEATYVKTKNGKWRAGKSKRAKRGEGKFEWQEPGLLKKAFADAGSIKKVKISIEPLSVSICTKAQERRTDQLIIGGLLSMVLKKCLPRLLSVQLIIIMKLKRLIDLNRA*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0030	cloud	direct	high	518	0.998	GCA_009378755.1_00330
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	322506	323396	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	21215	22105	GCA_009378755_1_4_309	GCA_009378755_1_4_309	+	680235	.	.	hypothetical protein	MKKLLLSVLSIGITTSVYANCNYDQINSPEYKVDEITSKYMSNSFVLSEKTGLFSRSLNNRQYADFANSNLKVSRTNVPTKYTQELYRSKTDNVVIGGKSYTRDRYVTTEFITPSCKTIYYMGGMPKNDILKANGEKLDDQDQLHIFGGSITPVSIKAKSRYDEFDGMYSLSTDMFDDNYLIRGNYNKKTGQLVVLQIYLKNLSFTGWSHFKSARDTNGGSYSVTQIDNDVDCSSKSVGLPCKITEVVGINITENLLRENPNGFKLKLYGKQEIIIEISPEVIKPFLEELDKIKSI*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0031	shell	direct	high	890	0.999	GCA_009378755.1_00331
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	323674	323865	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	22383	22574	GCA_009378755_1_4_310	GCA_009378755_1_4_310	+	680235	.	.	hypothetical protein	MNKFLSVLSVFATCLSYRPHLQWLKIRHAAVKKAVSLIAAMVSLSVKMDQSVHLRKFVNRVRA*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0032	shell	direct	high	191	0.995	GCA_009378755.1_00332
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	323862	323978	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	22571	22687	GCA_009378755_1_4_311	GCA_009378755_1_4_311	+	680235	.	.	hypothetical protein	MKLHSNLFTVKALAAGAACLAYGNTQFEFDATGLDWQY*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0033	shell	direct	high	116	0.991	GCA_009378755.1_00333
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	324087	324431	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	22796	23140	GCA_009378755_1_4_312	GCA_009378755_1_4_312	+	680235	.	PFAM:PF05657.10	tail-component	MNASRIIYEKLAPLVDSRVYPLFVPESVGQRPPYIVYQTISTQPDNTLDGITGHEWINIQIDVYHNDYDDMLALTDQVISVLDNIKPSEYGGCQYLYEDGLYRSLIEYGFWQTY*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0034	shell	direct	high	344	0.997	GCA_009378755.1_00334
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	324476	324907	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	23185	23616	GCA_009378755_1_4_313	GCA_009378755_1_4_313	+	680235	.	PFAM:PF16461.4	tail-tube-protein	MAKNVANLVDSFYQLFVSTDGEDFKKVEHLTKCSVPSDEKVLDDVTATDDKRTVKAVVDFKEESEIEFEFVVDPEDAAQKLVQKAFDDGSELHFQLKFVKASSESRKFTGLISKLSVDNEDTKKKLRKTATIAITGDVSKITE*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0035	shell	direct	high	431	0.998	GCA_009378755.1_00335
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	325111	325320	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	23820	24029	GCA_009378755_1_4_314	GCA_009378755_1_4_314	+	680235	.	CDD:pfam16459	Tail-assembly-chaperone	MQTEEDTILNNSAYSILYSVCDENGEPMFTEADLPQIAQIDAGTVGELMDAIKKVNRFDEDEAELEKNS*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0036	shell	direct	high	210	1.0	GCA_009378755.1_00336
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	325395	325652	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	24104	24361	GCA_009378755_1_4_315	GCA_009378755_1_4_315	+	680235	.	PFAM:PF06223.11	tail-protein	MSASELSEWLAYDRLDPIGGYRGDIQAATIAASMGGGKLSDYLIIDPNPMTDEQRQEYEYYQRLAELEDEQSLLIERFNHLEDAQ*	phrogs_hmm	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0037	shell	direct	high	258	1.0	GCA_009378755.1_00337
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	325698	330086	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	24407	28795	GCA_009378755_1_4_316	GCA_009378755_1_4_316	+	680235	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MLSLNIVLGANTAHFSRNISKATKKAEQDLKGLAGFAQKTFDRFGALNVIGGALSARNIIQTADSMQELASQVRINTKSHEEYKNVLNNLRDISRENYASFDATVDLYAQSKRALDNLGKSQAQVLTFTESITKAMAVGGGSAASQQAALTQLAQALNMGALKGQEFNSVASQAPVLIDLLTQKLGVSIDQLKKMGSEGKITAEVIYSAVADAGDALDAKMAMMPVTISQALSNIGQEYKNLVHDLVNENSRASALVVSSLNFVTQNFKTLTTVAGVAGAMFAGNYAKSMLYAKLGTDSMTASLVTKTKSLYAAIAAETKAAYSQQQLTNASALFSQQKKIAARAVELFDTATTKAYVNVSATSTVMMNYARANFTLANAKSVATASVMSFIGAAQSAALTTSQYVRTTFTLRNAKTVLSKATASSIATVNRWHTSAATAVGTGVAYARSLTTVAGAKKALTGTATLASNSITATALAMKKATIVATAYTVRLTTANATKKALVGTTVLATKSVMLFGRGLKSVGAIIMAHPIMIIGGIIAAIAVRTMGLEKAMESLGDAFDVSAEILGRLIDWGIDGFGRLWDTTSEFLSNFGIGSKQTTKNSQSYFAKMFADTEGGFVGMMQVAATMFDKMTGFAVGFAKYSLDVFNKFKAQTYNLFISLGDSVANYFLGKINGIIDGLNWVNSKFGGDKEYISHFELKSSELLKVPDAVFAMGAGTNLRGKLDGIIITNKLSKEAKAKAEAQANGVGGGGSGGENNKGGKDAKGKDKKDKEKEYDGRLVGISGNSGTSTGAHLDIRLTGGGRRLTAEELGRFKADGKDLSAYKITSDFGLRKAPKAGASSDHRGIDYAMKTGTAITTTHAVEDVEVFHQKGGGWVSRVKFADGLSVDLLHLAPESQQVKRGTSAKAGDKYGNMVAQVNNEYNEVLEQQAKKRDEILSAYSWDGLEKIALERTTALKELSEAGFSEEDFEIQKANIDEFFELKAEHYLWEREKQKNNLIEFAQTEERAIKLAATERRAEILFNHEFALAKNAELAKAMLDSIDFREEYELTSLKITQDEKARAIQNENALIKVKDLNLQNILRIEQELADKQSDINKLMEVANKHGSDILAEKLKMEEADLKRVHAERYRNELTRAYYDIVENALSEEEKLTRELNEQLEVLIRINAERGKPGAPKPSEDELNPMDLIKDNLRRKYGIAKPEMHPIDKLKADNEALLAEQTAFNERMIALEHSADESRRITAEQRRELIIYNDELVQQKIEENLRARYALMEKMAVEHYDAILGTLKSFVGENNRVYQALFTLQRSYAIGKALMNMWEAGSKAFAETPGTIWNKSLAAAAAVARGGQFVALLKAVQPVGQAHDGIMSVPKSGTWNLEKGERVLPRHTAKALDDKLDKIGNGGRPVNVVINNYSGEKTDVQQMPNGDMMVTIGKMISHTVDAKLNQRFIQARRQGGELYGR*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0038	shell	direct	high	4388	1.0	GCA_009378755.1_00338
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	330246	330548	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	28955	29257	GCA_009378755_1_4_317	GCA_009378755_1_4_317	+	680235	.	PFAM:PF05939.12	minor-tail-protein	MGASASVHHTVSKTQFGDGYAQRVSVGINNQRMDWSGSKTGDWQTVILPIKTFLDEHKGVIPFLWTNPHGQTKKYVCENYEISQKKGNFWEISLKFEQVF*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0039	shell	direct	high	302	0.997	GCA_009378755.1_00339
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	330674	330934	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	29383	29643	GCA_009378755_1_4_318	GCA_009378755_1_4_318	-	680235	.	PFAM:PF16777.4	partition-protein-ATPase	MSYLDTTELLQNQDTWKRSQVRLPNSLYQVVAKYAEDKSMSLNTAIIHLLDIGLVRETERIQSIRELKRALNEVNAKMQALENQSE*	phrogs_hmm	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0040	shell	direct	high	260	0.996	GCA_009378755.1_00340
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	331096	331647	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	29805	30356	GCA_009378755_1_4_319	GCA_009378755_1_4_319	+	680235	.	PFAM:PF04383.12	KilA-protein	MSNLPQTLKTVNFDGISVSFTENGYLNATMIAKHYGKRVQNYLKSERTQDYLRALDEHLSEAPKTASQNSLVIVKKGNSQEFEQGTWLHPKLAIDFARWLNPRFAVWCDMQIEQMLMSSAKSLTAQIIETTITLKHFDDNLSHAGRYLATHGKQTKPRLKAKLNELLAKAQPFLPFIELGGVR*	common_virus_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0041	shell	direct	high	551	0.998	GCA_009378755.1_00341
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	331789	332172	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	30498	30881	GCA_009378755_1_4_320	GCA_009378755_1_4_320	+	680235	.	.	hypothetical protein	MSETTLTEVSRTEAQVLQSFIAQVDFWKNQHGDKAATIEVIYYPEDDGFEVSNNEPNNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTEFSLSYKNDRYGVRAALASEATDKADDGAEQTQ*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0042	persistent	direct	high	383	0.997	GCA_009378755.1_00342
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	332319	332987	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	31028	31696	GCA_009378755_1_4_321	GCA_009378755_1_4_321	+	680235	.	PFAM:PF05100.11	minor-tail-protein-	MSFNTDIQQTTVQGFITLYELDARKLGGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGRASTPKLSIGDKINGIQGAVSALCRLYDDFARAKLTVTHTLQAYLDSHDAQNYRQQEWYIEQKVSENPSLGIVEFELSNPVDFEGQKIPVRQITTYCNEAVCGRYRGEVCGYTGTARFTHDGKPTDDPTLDRCSGLLAHCKLRDNEGSFCGFPAAGLV*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0043	shell	direct	high	668	0.999	GCA_009378755.1_00343
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	332984	333187	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	31693	31896	GCA_009378755_1_4_322	GCA_009378755_1_4_322	-	680235	.	.	hypothetical protein	MADKASPQARKKATANYFDKSLARIGLVISHTEPHVLDALNQIMAHKDCSKAMAIKIALVEYAKTLD*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0044	shell	direct	high	203	0.995	GCA_009378755.1_00344
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	333334	333456	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	32043	32165	GCA_009378755_1_4_323	GCA_009378755_1_4_323	+	680235	.	.	hypothetical protein	MIVILSIAFPPYVTARLVLAQSTPLVLMKCIVLQYTNKVN*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0045	shell	direct	high	122	0.992	GCA_009378755.1_00345
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	333570	334352	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	32279	33061	GCA_009378755_1_4_324	GCA_009378755_1_4_324	+	680235	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MRLTKTIKEAIHAHAKICYPAECCGLIIDGQYYPCDNAAPNPAEHFEIDYLNMVEMQEYHGEIQAIVHSHPNGNAEPSEIDRVQMSIHGLDWVICAFGYHADGKEYFDVKCHKPKAYQAPLLGREYYHGVQDCYSLVQDYYSRELDITLPSFARSDDWWENPNHEPLYENNFTKAGFIKVQDKNDLQKHDVILCRVGRTHHVNHALIYVGDGKLKSETTPDCVGNALILHHPHGGLSVREIYGENWQRRTAMVVRHQSLG*	mmseqs_cdd	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0046	shell	direct	high	782	0.999	GCA_009378755.1_00346
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	334344	334751	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	33053	33460	GCA_009378755_1_4_325	GCA_009378755_1_4_325	-	680235	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MLYPIAIEKPVSTNECYGVIVPDIVGCFSAGDTVDEAVKNAYEAIVLHLDMLADDGEDIPQATDIAHHQENPDYQGMIWAVVDIDLSAYMGKSEKINVTLPSRLIVKIDEKVKAHKSLYKSRSNYLAQLASRDLA*	mmseqs_cdd	nonviral_gene	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0047	shell	direct	high	407	0.998	GCA_009378755.1_00347
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	334784	334966	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	33493	33675	GCA_009378755_1_4_326	GCA_009378755_1_4_326	-	680235	.	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family [General function prediction only]. 	MNSRQMIKLITDDGWYEVAVRGSHHHYKHPTKQGKVTIPHPKSDLPIGTVKQILKQAGLK*	mmseqs_cdd	nonviral_gene	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0048	shell	direct	high	182	0.995	GCA_009378755.1_00348
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	335066	335677	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	33775	34386	GCA_009378755_1_4_327	GCA_009378755_1_4_327	+	680235	.	PFAM:PF06805.11	tail-assembly-protein-I	MKTIILHGILAKKFGKFFHLDVKTAREASHALACQIPAYRKFMLDAEKLGYRFAVFLGKVTKSNNIGEHKLDFITDKNTIHIVPKVIGSGGKTMAWLQVIGGYAMIGLGVAFGQPALIAAGVGLVLGGVSSLLMPTPKLDPNNEGGNRPNNGFGGAITTVAQGNPVPVLYGEREVGGFIASVSIIAEDKVVAGVANTANTRGF*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0049	shell	direct	high	611	0.998	GCA_009378755.1_00349
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	335681	337183	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	34390	35892	GCA_009378755_1_4_328	GCA_009378755_1_4_328	+	680235	.	PFAM:PF13550.5	tail-protein	MISGAKKQKGGQQKPNIQKDTTASNEFVQALYGLAEGEIAGLVDGGKSIKLDGTPLINDDGKPNFDNVTWDVRVGTLNQDYIKGFGSVSNETNVNVELRHDKPFVKALNNTSLDALVIRLGFHGLREQKDNGDVVGYRIDYAVDVQTDGGAWSEMLSTFIHDKASQGYKRSHRIDLPKARRGWVVRVRRITPNRDSGSIGDTMSVVAITEVIDAKLRYPNTALLALKYDAEIFSNIAKLSVRLRGKLIQVPSNYNPAERTYDGMWDGVFKLEHSNNPAWVYYDICTHKRYGLGLSVDKWQLYQIAQYCDEMVDDGKGGKEPRFTCNVYLQKAEDAYQVLQSLASVFRGLTYWDGMQIVVDSDTPKDAVYTFTRSNVVNGEFIYTGTRHRDRHTVFKVAFDNPDNDYKTEYEMVRDDYAIAKYGINILDINAFGCTSQSQAQRVGQWALKTEQLETQSIAFKTGLDGFIPKVGEIIHVQDNHRAGRKCVLGRWPLFGWRAF*	hallmark_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0050	shell	direct	high	1502	0.999	GCA_009378755.1_00350
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	337232	337372	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	35941	36081	GCA_009378755_1_4_329	GCA_009378755_1_4_329	-	680235	.	.	hypothetical protein	MAELERIKMEAEKLRAETLKIQKEATWFPWLSLAVALIALIVALVK*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0051	shell	direct	high	140	0.993	GCA_009378755.1_00351
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	337518	338711	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	36227	37420	GCA_009378755_1_4_330	GCA_009378755_1_4_330	-	680235	.	PDB:1Z19_B	Integrase	MLTEVWLKANNGKPRDKVTEIADRDGMSVRISPKGKIVFQLRYRFNGKLKRFDLGVYPLISLKQAREKSLSAKTQLLHGKDPKLEEQIAKQAYINADTFYECFLQWYDKSAVITKKQASDIKRSFELYVFPVIGSLPINDITLQQYIIIIESISEKTPGIAERILTNTKQMLKWAKKREIVTHNILADLELSDFNLVRVKRKRYLSDDEIILFYKALYGSKISYRNRLATELALMFGCRGIELRRAKITDFQDGVWTVPPENHKVGHITQQPLIRPILPPMQALIDEAIAISRSEYLFDRRGEMLEKNAFLDITAGLMHWIDRHCSIQLPRFTFHDLRRTARTNFSAFTSRDIAEIMIGHTVGNMQQVYDHYNYLPQQTAAYEQWLKKLAELKQVAL*	common_virus_hmm	common_virus	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0052	shell	direct	high	1193	0.999	GCA_009378755.1_00352
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	338937	339419	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	37646	38128	GCA_009378755_1_4_331	GCA_009378755_1_4_331	-	680235	.	COG1607	Acyl-CoA hydrolase [Lipid transport and metabolism]. 	MSGFCTLNIASTDLTMTVLMTPDMANFSGNVHGGTILKLLDQVAYACASRYAGGYVVTLSVDQVIFKEPIYVGELVTFLARINHVGTTSMEVGIRVEAENIQTRTARHTNSCYFSMVAVDQAGKPVPVPPLVVDDSLAKQRYEMAKKRKELRIKLQQHDW*	mmseqs_cdd	nonviral_gene	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0053	persistent	direct	high	482	0.998	GCA_009378755.1_00353
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	339442	339762	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	38151	38471	GCA_009378755_1_4_332	GCA_009378755_1_4_332	-	680235	.	pfam04358	DsrC like protein. Family member DsvC has been observed to co-purify with Desulfovibrio vulgaris dissimilatory sulfite reductase, and many members of this family are annotated as the third (gamma) subunit of dissimilatory sulphite reductase. However, this protein appears to be only loosely associated to the sulfite reductase, which suggests that DsrC may not be an integral part of the dissimilatory sulphite reductase. Members of this family are found in organisms such as E. coli and H. influenzae which do not contain dissimilatory sulphite reductases but can synthesize assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins. The strictly conserved cysteine in the C-terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds.	MNHLPSLDDDGHLKNHTDWTPKIAQRLADTIGVTLESEHYQIIGEVRVFFETYHHSPSTRPLIKYLMASLPNLDISNQKLQKLFNTGLVARHVNRIAGLPKPPNCL*	mmseqs_cdd	nonviral_gene	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0054	persistent	direct	high	320	0.997	GCA_009378755.1_00354
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	339778	340083	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	38487	38792	GCA_009378755_1_4_333	GCA_009378755_1_4_333	-	680235	.	.	hypothetical protein	MKFLIHINTDSELISYEAIALALTLATFDHDIQIELGEKVLVLLNNPKSRIYGMIQSLALYDLPKAYHNFQAVDALDKVIQLSLQSGSLALDDYDSKLYFQ*	.	hypothetical_protein	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0055	persistent	direct	high	305	0.997	GCA_009378755.1_00355
GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote	cenote	CDS	340093	340470	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C19	38802	39179	GCA_009378755_1_4_334	GCA_009378755_1_4_334	-	680235	.	TIGR03012	sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate. [Protein synthesis, tRNA and rRNA base modification]	MILLLVTSSPHSHAGKLAVEYATKQLHLGNQISVFFYGDGAYTANRLMWQTADVPSVAKQWQALSNNHGITLPVCVSTALARGVCDAQNATRHGLIGDNLLPPFSLVGLSELAMMIDDTTSVVQF*	mmseqs_cdd	nonviral_gene	C19	39179	301292	340471	GCA_009378755.1|RCJS01000001.1@region_301293_340471@tool_cenote_CDS_0056	persistent	direct	high	377	0.997	GCA_009378755.1_00356
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	471214	472422	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	1	1209	GCA_009378755_1_4_449	GCA_009378755_1_4_449	+	680235	.	COG4536	Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains [Inorganic ion transport and metabolism]. 	MPRPRTQNLANLSFVSIAIFAVSVAAIFIPSTAFAAFELGGTPTNLALLIFFICLSLVVSFLCSISEATLLTMTPSYIDTLEEDNPKGAALLKSVKVDHIEKSISAILTLNTVAHTLGSLGAGAQAVIVFGNAWFGVFSGVMTLIILIGTEIIPKTIGTVYWRRFAMPVAYYVRTINVALLPVIWVTEKISRMLTRGNQEIGFNRHEFLALANQGESLGQMSEMETRIIKNSLALGMINVEDILTPRSVVSAFDENMTVGDVFASYPKLPFSRFPIFDEDLDNATGFILKSDLLIAKANQEIHTPIKQFRRDINFVFAKMKLFDLLDLMLKEQVHIALAVGEFGEVKGLVSLEDVLETLLGLEIVDEFDRVDDMQILARQLMDKRMARLGAKLEEDAPFDEK*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0001	persistent	direct	high	1208	0.999	GCA_009378755.1_00474
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	472528	473133	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	1315	1920	GCA_009378755_1_4_450	GCA_009378755_1_4_450	+	680235	.	PF13474.6	SnoaL-like domain	MAYSFIDKYIEYKGWFMKYSTRSVLRKAVAASMLTAVIRSAIQLTGRSFGKGASIGLFIGMIGVQSLITTNAYAISEQDVSRYASSMSSAANAQNIAQISRLIDDDAIISLSRGGKTTSLDKEGYLQLLQKSWATSSDYRYRINVADVVVTGNQARAQIVTTETWTQDGKPVTIKTASRATFSQVGNNAVLLRSVSQVTVD*	hhsuite_tools	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0002	persistent	direct	moderate	557	0.919	GCA_009378755.1_00475
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	473328	476207	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	2115	4994	GCA_009378755_1_4_451	GCA_009378755_1_4_451	+	680235	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MKKHTKSSISTQILKPLSLAISSCILVACSSTGTPAKPVSQTPKPIPQAKPSQQINISSGNTNLGNTKTGADVDVLDVQMLDALEALLQATDMSMVEGDELAIQRYGNLWDRVRRGYRINEMTNARIEAQKSWFYTRQTYLDRLTARASRYLHHTVAEAERRGIPSELALLPIIESSYDPTATSNAAAAGLWQFIPSTGRIYGLNQSATYDGRRDVIESTRAAYDFLTSLYNQFGSWELALAAYNAGPGRVSRAIKANQDQGLPTDYWSLKLPTETMNYVPRFLAVAQIVRSPNTYGINLPAIANHSHFRTVPVNYGVSLSEVATVTGLSVSELRLLNPALLNFTVDEIGPNRIVIPDSLPNQIDNQLASLKGYGFGGDYIATAPAQSITYVVPKSGATANTSSQQELIAANTLPTTIAQVTPNNTIVQEPALSKSEINLIAAEIQKTSPEVPAISPQDGNIQLNAVQTGQSVLDARGETKMLSFADGPKTQAVAQQPTQPVQVAVTPPAQPVQITVVSPTPEPISQPKPQLPPVAASIPVVSSPPVLVPPLPSRPRPEPASRPKPKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQTPSRQSTSTANTNSATHKVSAGESLTAIARKYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKTANTTMANTSSSPSVNKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQQTSQATQSTKNNQSTQSTATHRVQSGESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKAESSTPSRLGNTKNNSTRTPANTNIGITENYTVRSGDSLTMLSNRFGVAIGDLATANGLASNANLRIGQTLKVPKLTTTYTVKAGDGLIALARRYGISTQELAKMNNLEPTADLRIGQVLTVPNK*	common_virus_hmm	common_virus	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0003	persistent	direct	high	2879	1.0	GCA_009378755.1_00476
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	476365	478197	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	5152	6984	GCA_009378755_1_4_452	GCA_009378755_1_4_452	-	680235	.	COG1274	Phosphoenolpyruvate carboxykinase, GTP-dependent [Energy production and conversion]. 	MTAKITAPDFVRHQALIHWVAEIAALTKPAAIEWCDGSEEENQRLIDLMIKNGTMIKLNEDKHPNSYLAFSDPTDVARVEDRTYICSKEEIDAGATNNWVEPSQMRTKLNDLFDGCMAGRTMYVVPFSMGPLGSHIAHIGIEITDSPYVVVSMRKMARMGKEVYDVLGADGEYVPCVHTVGSPLTEGQKDVAWPCNDDKYIVHFPETREIWSYGSGYGGNALLGKKCLALRIASAMGREQGWLAEHMLILGVTNPQGKKHYIAAAFPSACGKTNFAMLIPPAGYEGWKVETVGDDIAWIKPSEDGKLYAINPEAGFFGVAPGTNTKTNSNCMSTLGSDVIYTNVAVTDDGEVWWEGKTKETPANLTNWKREPHTGAERAAHANARFTVSAKQCPSIDPQWENPEGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAATMGSETTAAATGQQGVVRRDPFAMLPFTGYNMADYFNHWLQMGENLGKKAKAAGNQLPKMFKVNWFRRDTNGDFVWPGFGQNMRVLQWIIERCEGTANAVRTPIGLVPTYDDINWDQSDFTKAQFELVTSQDKDAWIKELESHAELFDKLGERMPTALKAHNAKLKADIEQA*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0004	persistent	direct	high	1832	0.999	GCA_009378755.1_00477
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	478495	479913	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	7282	8700	GCA_009378755_1_4_453	GCA_009378755_1_4_453	+	680235	.	PDB:3BH0_A	Helicase-ATPase	MAKAKSSYICQNCGAIYGKWAGQCTDCGEWNTLVEAPNTSLPHHHKSKTTTAPRKTANYAGAVSAVMTLDHVGVTLETRMPTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGDSLSGSALYITGEESLSQVAMRAVRLGLPTDRLRVLAETNVDTICAALTTEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDSRFRMIRAIKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIHTSGMDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPVRLCVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRANAPAANHPQFKNIQIIAVDRLDEAIYQAFEINAG*	rep_hall_hmm	common_virus	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0005	persistent	direct	high	1418	0.999	GCA_009378755.1_00478
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	479955	480674	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	8742	9461	GCA_009378755_1_4_454	GCA_009378755_1_4_454	-	680235	.	COG1118	ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. 	MSIKIQNIHKTFGDFVALGEISIDISTGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYFDSIDVTDIPVQHRGIGFVFQQYALFRHQTVAQNIAFGLTLLPRNTRPSANTIDRRVDELLDLVQLSHTKTRYPHELSGGQRQRVALARALATEPKLLLLDEPFGALDAKVRKSLRDSLKDIQREIGITSILVTHDQEEAQAISDKIVIMNHGQIEQIGTPSKLFAQPSSDFVVDFLGL*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0006	persistent	direct	high	719	0.999	GCA_009378755.1_00479
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	480767	481606	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	9554	10393	GCA_009378755_1_4_455	GCA_009378755_1_4_455	-	680235	.	COG4208	ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. 	MSHTSSYLYQKNPATRDKPWVRWSLIGIAVVFMGVMLVVPLVSVFYEALKEGWQAYQAALLEPDALASIKLTLITAAIILPINTIIGVALAYLITRHQFRGKFVITTLLDLPFAVSPVVAGLMFVLVFGANTRLGGYLESMGIQVIFATTGIVLATLFVTFAFIARELIPLMQAQGDSEEQAALTLGANGWQMFWKVTLPNIKWALLYGIILTNARAMGEFGAVSVVSGHIRGETNTVPLMIEIAYNEYAFTLAFALSSLLALLALITLVAQGLMSHKK*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0007	persistent	direct	high	839	0.999	GCA_009378755.1_00480
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	481651	482529	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	10438	11316	GCA_009378755_1_4_456	GCA_009378755_1_4_456	-	680235	.	TIGR02139	sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]	MLNQPIPLKNRARRVMPFFGLSMGISIFALGLLVILPFLMMILTTLQMSFDDIMQTIREPQVFAAIKLSLSMAMLATLTNLIFGTLAAWVLVRYEFWGKSFLNALVDLPFALPTAVTGIALATLYAPNGLFGQWFTHLGILLFNEPIKIAFTPIGIWLALVVVSFPFIVRAVQPVLAELSVEFEEAAAVMGAGRLTAFCRVILPEISPAMLIGAGMMFARATGEYGSVIFIAGNIPMQSEILPLIIVSKLEQFDVAGAACVSLFMLLISLVFLFTMNFIQWKLSARLGAKTN*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0008	persistent	direct	high	878	0.999	GCA_009378755.1_00481
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	482879	483319	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	11666	12106	GCA_009378755_1_4_457	GCA_009378755_1_4_457	+	680235	.	.	hypothetical protein	MMMKNKWMRGLAILVLSLPTVTYAKTAAPKASEAPEVSLTQEEQMAIDFCDFSAYGVMHIAGDHQGGATKSEALTNHDKRMAELKDLIDLDPETATMLDKYWKGAIDRIFQESVQKTDAEKQAFVMGVGESSFYSCLDQVLKTPKN*	.	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0009	persistent	direct	high	440	0.998	GCA_009378755.1_00482
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	483350	484525	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	12137	13312	GCA_009378755_1_4_458	GCA_009378755_1_4_458	+	680235	.	PDB:1OYW_A	ATP-dependent-DNA-helicase	MTETTVKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCHELTRFSQLYNLCITGGSDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKVTMLSGDVAQQKRERYLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDAFNLPALERHIDQKFKLNQFEFLDEHK*	common_virus_hmm	common_virus	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0010	persistent	direct	high	1175	0.999	GCA_009378755.1_00483
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	484539	485714	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	13326	14501	GCA_009378755_1_4_459	GCA_009378755_1_4_459	+	680235	.	COG0635	Coproporphyrinogen III oxidase or related Fe-S oxidoreductase [Coenzyme transport and metabolism]. 	MYPDLLDPAHIPLSLYIHMPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIGGGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTIGINRLSIGVQSFDHNALTVLGRIHNPDQASNAIRAARIAGFDRVNADLMYGLPNQNPSKAVNDIQTAIDAGATHLSWYQLTIEPNTTFYCTPPQLPDEEIMAEIETLGQSVLTKHGFYNYEVSAWHGPNDAPCQHNLNYWQFGDYLAIGAGAHGKLTLKNHPDYQDGIYRYQKSRQPKDYLAFEDAPKMVNFERISDDNLPFEFMMNALRLKDGVSTDVFETRTGLLISTIDNEMLPLQHQGLMVLDPLRIAPTRLGFRYVNYLVSQFI*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0011	persistent	direct	high	1176	1.0	GCA_009378755.1_00484
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	485796	485936	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	14583	14723	GCA_009378755_1_4_460	GCA_009378755_1_4_460	-	680235	.	COG5510	Predicted small secreted protein  [Function unknown]. 	MKKVLVASIAAVVVLTGCNAIKGFGKDVSKAGEAVSDTAQKVEKKI*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0012	persistent	direct	high	140	0.993	GCA_009378755.1_00485
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	486184	486729	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	14971	15516	GCA_009378755_1_4_461	GCA_009378755_1_4_461	+	680235	.	COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]. 	MSQFSDALIHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEEVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQLGFVGDIGQSVGYHKPTSR*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0013	persistent	direct	high	545	0.998	GCA_009378755.1_00486
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	486845	487060	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	15632	15847	GCA_009378755_1_4_462	GCA_009378755_1_4_462	-	680235	.	.	hypothetical protein	MTDSTTSPARQKATNTYRQKALANIALVISHTEPHVLDALNQIMAHKDCSKAMAIKVALVEYANTLSQTSR*	.	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0014	shell	direct	high	215	0.995	GCA_009378755.1_00487
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	487463	487753	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	16250	16540	GCA_009378755_1_4_463	GCA_009378755_1_4_463	-	680235	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MALECLDVHFSGLVADGEEIPLPTNFDAHTQNSQFDGMMWAWVAVDLSKYDVKSHKINITLPNHLIAKIDEKVAAHKSLYKSRSNYLAQLAMADLA*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0015	shell	direct	high	290	0.997	GCA_009378755.1_00488
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	488078	488275	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	16865	17062	GCA_009378755_1_4_464	GCA_009378755_1_4_464	-	680235	.	PFAM:PF16777.4	transcriptional-regulator	MPKIVANPKTRAQIQKDSDARRGVKPIGFKVPIEFAELLDELAKQSGKTKNIIIMEAVELWAKQL*	phrogs_hmm	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0016	persistent	direct	high	197	0.995	GCA_009378755.1_00489
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	488851	489288	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	17638	18075	GCA_009378755_1_4_465	GCA_009378755_1_4_465	+	680235	.	6AF2_A	HIT domain-containing protein	MFQLHPTLAKDTFLVGDFPLSTVRLMNDCQFPWLILVPRVSGIKEIYELSAADQVQFLRESSWVSSQMAKIFGADKMNVAALGNQVSQLHFHHIVRYQNDAAWPNPVWGHEAMPYTQEVLSHMQQTLMMALRGHHQMPFDWKMDV*	hhsuite_tools	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0017	persistent	direct	high	437	0.998	GCA_009378755.1_00490
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	489442	490104	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	18229	18891	GCA_009378755_1_4_466	GCA_009378755_1_4_466	+	680235	.	PRK00043	thiamine phosphate synthase. 	MTLQSIDKVPKLYLLTNDDELTTLLDKLERVFDTGAVSLLQVRRKSTLKLYDLATVYREAEMIVSLANDYDIKVVMNDSLELASHFGTGLHLGQRDGSVRVAREILGDHVVIGRTCHTDLALFKEAKREGATYGAMGTAFASITKPRAKIISKDILKKACELDFPLCVIGGITLENIHQLRDKLNGAAIDYIAVTADIMGHSVDTIADKCLAWQQKLNTW*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0018	persistent	direct	high	662	0.998	GCA_009378755.1_00491
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	490109	493663	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	18896	22450	GCA_009378755_1_4_467	GCA_009378755_1_4_467	+	680235	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MIDTFKPKLDLPTKANFKTTLPLLGGADLSFWLALAAKSEERLIVMIANHQNELNQLDTELSFFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGVLLVSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQAGMNTHHAQKLPSSAKITEFRLLPAREFPLEEGKEMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQVLKAYPRVVINTNHDTAKIGAMESLPPPILPINHQAAKPLSELLSFIKSGQVPILLVAESAGRREIILELLKDKVAVKVVDNYQEFINNLDDFNTDCIALSVAPIECGLWLRDETGGLCIISETQIFGRQVLQTRRRRQSSISQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDEAIKEAILREILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATNAIKQGKTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRTEMIDRFGTLPTQTQNLFAVHRIRIRAKALGITKIDATQTTISIEFRADTPIDGLAIIKLIQSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESTKTA*	common_virus_hmm	common_virus	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0019	persistent	direct	high	3554	1.0	GCA_009378755.1_00492
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	493660	493929	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	22447	22716	GCA_009378755_1_4_468	GCA_009378755_1_4_468	-	680235	.	.	hypothetical protein	MPMSIPTKATVGYTQRRLFMVSMTVGLISLSGCQHIQVTKSPIPIIIHSHTKSPSQPKPTPTDAVPTKNRPISPPTQKSNTIFILEDWF*	.	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0020	persistent	ambiguous	low	5	0.019	GCA_009378755.1_00492
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	493929	495191	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	22716	23978	GCA_009378755_1_4_469	GCA_009378755_1_4_469	-	680235	.	TIGR02800	tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MKSPITKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLSLAGLGTTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTVNGSIITPTFSPDGLSIAYSVQTKNNLPIIYIVSVSGGTPKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGTRRQSLYRYDFGTTHSTQIASYATNPRLSPDGSKLVYLSGGQIIIANTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRTIPTSGTVRDPIWSK*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0021	persistent	direct	high	1262	0.999	GCA_009378755.1_00493
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	495208	496002	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	23995	24789	GCA_009378755_1_4_470	GCA_009378755_1_4_470	-	680235	.	4G7X_B	Putative uncharacterized protein, TolA protein	MRLSDNHPTVNFDKSALILPILASVLLHTVIIIAVAAPLITPPTKPNTTIQTALVGQEAFNRVKTALSNHHANQNKPTATNTSSTITANDNAFMQAQNQHRYHPQVSTSATTTQAYHPPPNSAPFESNSPNIQNQPTNAHAKLAEYSNHVSDLEQSNHTESTPSRAQINAAITSVKHRIEAIWQRYPKQPNQTITFQVNMNQQGDVTSIQFGGGHPDLRESVEAAVYAAAPFYELGGMRDSIRLQFTTEQLIMDNNQTTNEPNH*	hhsuite_tools	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0022	persistent	direct	high	794	0.999	GCA_009378755.1_00494
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	496033	496467	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	24820	25254	GCA_009378755_1_4_471	GCA_009378755_1_4_471	-	680235	.	TIGR02801	TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MVTSNRFARRQRPLNSDMNVVPYIDVMLVLLVIFIVTAPMLATGIEVSLPKEQTKPITQADKLPVIVSIQADGNLYVSHKNAIDVPITPDKLDTLLRQMHQDNTDLQVMVNADADNAYSRIMQIMALIQNVGITQVSLLSESVQ*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0023	persistent	direct	high	434	0.998	GCA_009378755.1_00495
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	496493	497182	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	25280	25969	GCA_009378755_1_4_472	GCA_009378755_1_4_472	-	680235	.	TIGR02796	TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MNESISLISLVIEASVVVKLVMAILLLLSTISWVLIFHLGTKIGGIAKFDKRFERWFWTDDIDHQLSVVQAESERAGLELIFYTGFYDQNHQDQDSSLSDDKKVQIVERRLRMALGSEQVHLEKGLSTLATIGSVSPYIGLFGTVWGIMNAFIGLGQAESVGLATVAPSIAEALIATALGLFAAIPATMAYNHFATKSNTLYENRSLFCEGLISALVTNLAKKNTASTL*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0024	persistent	direct	high	689	0.999	GCA_009378755.1_00496
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	497457	498257	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	26244	27044	GCA_009378755_1_4_473	GCA_009378755_1_4_473	+	680235	.	PRK11131	ATP-dependent RNA helicase HrpA; Provisional	MHSTDNLPVLAKDRHYLNKLKQKMNSTTGDLKTKCKIRYDAIYERSAEQVANRMDSIPKNLSEKLNHDLPVTAEADTLIQAIRDHQVVIIAGETGSGKTTQLPKLAMMAGRGITGQIGHTQPRRLAARSVAMRIAEELGEPLGQTVSFKIRFTEEGGKHSIVKLMTDGILLAELGSDKFLANYDTIIIDEAHERSLNIDFIMGYLKRLLPKRPDLKVIITSATLDTQRFSDYFAANGKPAPVYIVEGRSYPVEVRYHPLTDTIVSS*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0025	persistent	direct	high	800	0.999	GCA_009378755.1_00497
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	498303	501629	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	27090	30416	GCA_009378755_1_4_474	GCA_009378755_1_4_474	+	680235	.	PDB:3O8B_A	protease-helicase	MTAAINECFEDARTKGHPDQADILIFAATEAEIRELQEVLMLYAPAHTEILPLFARQSYGEQQKIFAPSGKGRRIIIATNVAETALTVPNIRYVIDLGFARISRYNYRSRIQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEEDFNSRPEFTEPEILRTNLASVILQMERLQLGDVNAFDFITPPDLRLVNDGRKLLIELGALDDKSFTKTRTKKGRTQLSSLTKIGQQMAKMPIDPRLARMLVAGDTFDCLADILIIVSALAVQDVRERPINKHAQADQKHALFRKEDSDFLFYLELFAALFDQHSTNDNQALSSNARRNFAKKHYLSYARIREWQKTHRQLSEMMAEMGFEINKQKNHQNDVKIDTKKGVRLSLKSGTSHQKSIKQALVGAKALKNDIDNKTSIHYANIHRALLSALLSFVAHKTDTVGEYLMARSQKARIFPASTLHKKGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPNLLKYHYFEPHWSKKAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDALVANQYGMQMKFLADNANKIKDIERIEDKLRRRDLLVDEESLYQFYDAKIPNHIASRKSFEEFYHDAENKTPNFLHFSDEDVLNEAVDDSREFPESWHLGGVRLPLSYVFDPAADNDGVTVHVPIKALAQVDPVALLWGISGWRYELVLQLLKTLPKEIRRQIVPIPDTCQKIFHQLDASSKMGLLDQLVAALKTLGVQAHAQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARHRKASVQSIAIEQGVHHHFPNHFNFVKNKHTSGIVMQEFSALKADAAQSAVFIATFTEMNAALAEHKKGVLTLIKGHLGAKQKQLTGQIDKAFKLAFAPLGDLEKLKNIVVHATLEACLYDYGPDFDHKPVSQHGDHARAAIAGLITQNNQWLISHLPLDEREFDDCQDLILKNFLLVGQEILRNLKEIYTAWQTARGKLLMLDQEIFGENIEDIEDQLDDLQLANFVYQTDYRHWRQYPRYLQALNIRLDRLQHNLEADLDAVYLLDTHMERLARCVKNPKFAEYRWLVEEYRINLFAQPMKTVQPVSAKRLETLWANLTTQ*	common_virus_hmm	common_virus	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0026	persistent	direct	high	3326	1.0	GCA_009378755.1_00498
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	501891	503387	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	30678	32174	GCA_009378755_1_4_475	GCA_009378755_1_4_475	+	680235	.	1YC9_A	Vibrio cholerae, outer membrane protein	MSIKCQLVAIDNIIKPCYDKILNFVYFSTMKTPYFLLLGLLLAQQADADYSLLDAQKQLMSSSPAIQASHALYQADFLQAESLQKLHYPRISLNAHAFVLQQNSSIPLDHIKEQTAQHINTHFDHRFGSAPDGLLDALHDSTQTALDRLPDHQDVKLRHDGITPNITATMPIYTGGLISSSKNIANLQAQRGKFGLQERISLAKLNLIRHYFNVQLQKQLTDTQQNMLSAMQLHVDNAYKLEQQGFISRGQRMQFEVARNQVQRLYQSTQNQHQNSIYELAVLLGLPHIEPLSTPLFINTQHRPNWQALLKDSQNTPLNQKLKTDTQLADENIALRQSTKKPKIAAVARYTLDDKPDWFAGVAVSYNLFLGIDRDKQIEAAHLQKQAAQLGHEQVNEHITTTMHTAYGEMVLAQKTHALLQQNRQAAKENLRIQTLSFQEGFGTVAGVVDAQSALSQIDSETALNAYRYLLALATLLHYTGTIDDFDDYLSLDDAHKL*	hhsuite_tools	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0027	persistent	direct	high	1496	0.999	GCA_009378755.1_00499
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	503434	504597	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	32221	33384	GCA_009378755_1_4_476	GCA_009378755_1_4_476	+	680235	.	COG1566	Multidrug resistance efflux pump [Defense mechanisms]. 	MTDKTDDVKPDTDGNHSKKQKPHTQAKSKPRPLALFLLLALIGSVLLVIIFGLIQSYGTPQNLPTANAIGSTNEPPKGVISHLRQKITGPATFSIQGRVEGETVNISTKLPSRVAAIYVKEGQAVRAGEPLVQLISPEIDAKKQQAAAMLQSALAFQSSTDRGTRQENVDTLYANWQSAKAQATLAEESHRRGEYLYQEGVISRQRRDEMRAAKQSSAQIAHAAQQQYLKAQRGRTDELKSSADAQVQIARAAVAEADALDAETMLYAPIDGTVSKIYIQSSELVMPAVPVMSLLDNHPTITISIQENQYSHVHALPKLTGFIPALNKTADFKIVHTDDEGEFATIKNTRQTGGYDIHSFKTKLEPITPIEGLKVGMSVIFDITVLP*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0028	persistent	direct	high	1163	0.999	GCA_009378755.1_00500
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	504625	505803	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	33412	34590	GCA_009378755_1_4_477	GCA_009378755_1_4_477	+	680235	.	PF12698.7	ABC-2 family transporter protein	MIVRFIRAFCQAFLRELNRLSCNRFDLAMVMIAPLVIIVLFGAMFYHGKAHHLPVALVDEDNSELSHLIYQHIHHNETIKTVLILDNVQDAHHAINRLDVGGYIHIPKDAQNRLVRGENTGIHIAYNQSFFSIGSAISSALSKSTKGGIAKFIQTKHLTGVLPHLPGNMPHVKISVLFNPNLSYEFFLEPFLVAAVLHLLLCCLVAHAIGQEFHENSVHEWLYHSPFGALFGKISVYVLIISLWHGLWQAWLIGVRGWFVAGSLFVLIIGQLLFYLAYALFGAMVVLKTQNINKSYGILAVYGGSSMSFAGVTLPLNNAPSFTQFWSQIIPFTPFARLQVEQWVIGSPFIITLAHLNSLLIFVLIFGIGSLLLLRRINKTLIATPNSSKDDS*	hhsuite_tools	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0029	persistent	direct	high	1178	0.999	GCA_009378755.1_00501
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	505803	506903	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	34590	35690	GCA_009378755_1_4_478	GCA_009378755_1_4_478	+	680235	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MRRFIKQYLTIWLDIIKDRSIFLTMVLSVVFYGFFYPFAYQAQRPADLPIVIVDEEQSPLTQAIIHTTSHTPNIHVLAVVSDFRQAQMLVQSAKADGILLLPDNLSQSIHHGQTGGVGLYLSSAYFLRTQNIGAGLVSSLQATIIQELGQVTQTRHKPMPELIHQSALFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGYRQRLWRASACDFLAIYAVALTIGCLSCFYLFGFVFWWHDYPRGGNFWGMMLGVPIFVSCAIGVALLIASWVADGAKVGVLLIFSSVPLFMLTGLAYPLMAMPKFLQPLAHALPTTQGVQMFIQLNQMGVSIQDVWQKMAYLASVAVLCLGVAFWRLRLVNKSV*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0030	persistent	direct	high	1100	0.999	GCA_009378755.1_00502
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	507228	507347	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	36015	36134	GCA_009378755_1_4_479	GCA_009378755_1_4_479	-	680235	.	PDB:2MXZ_A	L-alanyl-D-glutamate-peptidase-endolysin	MAQASGKLGVNVRWGGAWMVITGKAGTPQEWVKAYRAGG*	common_virus_hmm	common_virus	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0031	.	unmatched_CDS	none	0	0	.
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	507539	507721	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	36326	36508	GCA_009378755_1_4_480	GCA_009378755_1_4_480	+	680235	.	COG1598	Predicted nuclease of the RNAse H fold, HicB family [Defense mechanisms]. 	MHYPVTLTPDTDGFCVTFRDIPEAISQGDTTDEALDMAQDALMVAMEFYFEDNRAVPMPS*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0032	shell	direct	high	182	0.995	GCA_009378755.1_00503
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	507749	507952	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	36536	36739	GCA_009378755_1_4_481	GCA_009378755_1_4_481	+	680235	.	PFAM:PF15919.4	toxin-antitoxin-system-HicB-like	MPPSVWVKVLLLNEMIAQNVSQAELARRMGIVPQSLTRLVDLSHTTKIDTLANAFAKLGKQLQVGLV*	phrogs_hmm	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0033	shell	ambiguous	low	20	0.098	GCA_009378755.1_00504
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	507932	508726	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	36719	37513	GCA_009378755_1_4_482	GCA_009378755_1_4_482	-	680235	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MTLTKHTKRLIHAHAKICYPAECCGLIIDGQYYPCDNVAPNPAEHFEIDYLNMVEMQEYHGEIQAIVHSHPNGNAEPSEVDKVQMGLHDIDWVIVGLGHTPTGATYCDIKRHKPTTYQSPLLGREYHHGVQDCYSLVRDYYSRELDIHLPDFHRTDGWWEKEHHLPLYENNFTKAGFIKMQDETDLQKHDVILCRVGRTHHVNHALIYVGDGKLKSETTPDCVGNALILHHPHGRLSTREIYGKGWADRTAMVVRHQASNQTNL*	mmseqs_cdd	common_virus	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0034	shell	direct	high	794	0.999	GCA_009378755.1_00504
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	508843	509562	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	37630	38349	GCA_009378755_1_4_483	GCA_009378755_1_4_483	-	680235	.	COG3600	Uncharacterized phage-associated protein  [Mobilome: prophages, transposons]. 	MAMIANTLKMVFIVLLLVLMVTMATILPIKQTLLDVLYYSLAYLKIQVIITVLYEIVMIIWLFLSHFEKGVVMIKAPYNPIDVANYIVAEAVKREKPVTHLKLQKLLYYVVAKYAKTYNTILINEDIVKWQYGPVVKSVYHYFKLHGDRIITKPIAYLESAEIFNLKFTDVDANNAQLGNDKRLVDTVGQVLNDTDLLTAYELVERTHKEPAWRNFEPEILQGFEPYYSEDELKAATYD*	mmseqs_cdd	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0035	shell	direct	moderate	663	0.921	GCA_009378755.1_00505
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	509698	509898	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	38485	38685	GCA_009378755_1_4_484	GCA_009378755_1_4_484	+	680235	.	PFAM:PF16777.4	transcriptional-regulator	MPKITSTPKTQTQIQKESNARRGVKNKAFTLKLDDIELIKSLSKRLNIPQNQLIMDAVRAYQRQLD*	phrogs_hmm	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0036	shell	direct	high	200	0.995	GCA_009378755.1_00506
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	509895	510242	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	38682	39029	GCA_009378755_1_4_485	GCA_009378755_1_4_485	-	680235	.	PFAM:PF04883.11	tail-component	MGIKWHKKITVEPIADKIDATYRKFAIDCYNNVIALSPVRKGRYKNAHHISIGSPSYAETGGGIELVLGIPKHTYPLIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSAIANLG*	hallmark_hmm	common_virus	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0037	persistent	direct	high	347	0.997	GCA_009378755.1_00507
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	510232	510591	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	39019	39378	GCA_009378755_1_4_486	GCA_009378755_1_4_486	-	680235	.	PFAM:PF12206.7	head-closure-Hc1	MKQEITADIANAFDTDLKDAVKDFTAKRVILSDDDWAVNDTQVLSTINYSGRGVFTGFYAHEIDNKTIMQQDTKLICLQSELTDRPQMNDSINQMKVMNISQDPAGICYFIQLRGTNGD*	phrogs_hmm	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0038	persistent	direct	high	359	0.997	GCA_009378755.1_00508
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	510720	511112	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	39507	39899	GCA_009378755_1_4_487	GCA_009378755_1_4_487	+	680235	.	.	hypothetical protein	MNVIYKTEAGTKVKKAVKALNIKAKIKVTQHRYKVYVSITTTNAKLCEVEALKKVTSEMTSEIDDIYVTHNNNQTNEYAKMLNDLAVKFFCKKYRNNHQTDEELAEIAKPHIQKIINGTHRLSSEFWATI*	.	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0039	shell	direct	high	392	0.997	GCA_009378755.1_00509
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	511160	511369	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	39947	40156	GCA_009378755_1_4_488	GCA_009378755_1_4_488	+	680235	.	7DTR_A	HTH motif, protein interaction, VIRAL	MKPHIDNHRPDPTYLRALLKKAELSQRKAAHMLGVSERMMRYYLVHTDDPNYRPMPYAVQFCLECLAKT*	hhsuite_tools	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0040	shell	direct	high	209	0.995	GCA_009378755.1_00510
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	511366	511725	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	40153	40512	GCA_009378755_1_4_489	GCA_009378755_1_4_489	-	680235	.	CDD:cd08053	Head-Tail-Connector-Protein	MITLDDLTDIDKADEQTVVIVNAWLNKHKIRAFDKTPDPIKQAGRYIAKAWLDGDLFATRTEGQVISKSSKAGDVSVSKTYADGQMGQAMSQNEQIALALIEPYVQKSLGMFSLPLVRG*	hallmark_hmm	common_virus	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0041	shell	direct	high	359	0.997	GCA_009378755.1_00511
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	511786	511989	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	40573	40776	GCA_009378755_1_4_490	GCA_009378755_1_4_490	-	680235	.	.	hypothetical protein	MSLPKDKVKPAFNFTYPSERAYFDESKSTLANAQVTDPAKSGADYGIKDPQVTEALTGTKSETAKVE*	.	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0042	shell	direct	high	203	0.995	GCA_009378755.1_00512
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	512000	513016	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	40787	41803	GCA_009378755_1_4_491	GCA_009378755_1_4_491	-	680235	.	PDB:6R3A_A	Major-Capsid-Protein	MAKLREIFNKNVTLSYQVKDNLQRSKFWQSGAFVSDARLRPLLNSGSLTFDVPFIHPIDGNLEANYSNTIMTDIAMPRSIEGSKSKGRLALLNEGFIESRLESYLMGQSPLKLMAQMIDDYWLTQAENRAIATLFGLLNYDQSNGKKLSTDISKATADDSSGFDVHAFIDAEGTMDEMYQGKGLMVVHPLIATKMRKQRLVERVTTADDLKPIDVYNGRTVIQSKRATVIGTGKNAKYVSYLLGNGAFAADMVSGQDDLELERTANTGNGSGHTTLWTRRNMLIHPQGFSFIAESSTLTGGTKNEALSPSWTDLTTAANWRLDHNAEATAIRFLITNL*	hallmark_hmm	common_virus	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0043	shell	direct	high	1016	0.999	GCA_009378755.1_00513
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	513019	513654	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	41806	42441	GCA_009378755_1_4_492	GCA_009378755_1_4_492	-	680235	.	PFAM:PF06810.10	minor-structural-protein-	MSEKPTTVLSDDTQNQITQEQYNELQAEVERLRKHSETLLAEKKQQSEQRKAEQAEKERLAEETARKKGDFETLEKQYQAKIQELNEQIAKRDKERDENLVKSHAQKLSSQLSDNPANQEILQILIEKRLFAKDGQLSVLDDSGAVSIMTLDDLAKQMQNCGKYDSLIIGTKSCGTGSNGQSAKRAGDYSEQERLALAHSNPALFNQLFLE*	hallmark_hmm	common_virus	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0044	shell	direct	high	635	0.998	GCA_009378755.1_00514
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	513874	515628	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	42661	44415	GCA_009378755_1_4_493	GCA_009378755_1_4_493	-	680235	.	PFAM:PF06152.10	minor-capsid-protein	MKHLINLERFKVHLANKFKTTLNEIDEFLQLVVFRHEISELNYKEFELLIGESKQKLLGFLAGYALELTQDWQELYDYSYTLETKMIDDDKPDTLNMNEPQFDADSPIKLSAQVGVTLNQILAKFGDEQSTKISNAISYAYANGLPNQELVRIIRGTCKNRYQDGILAITTRHAKTIAHTGTAIVANQAKQQFIHDNKDIIKGIKVIATLDLRTSSICRGLDGVFMPLDKARYPPYHFNCRSSFEIVYDGYQTPKQRASMDGVVKNQTYYEWLKNQPAQYQDEVLGKTRAKLFRDGGMTVERFRALQLDKHFTPLTLEQMRALEPKAFDKAFAAVVKLDNTKDRVLAVKRTDWGDLPNVMIAHAKDTITTHKHYQKAKSGELSSALFLVDEYLTDDFVLKLHHTIKGYDNVRIVPVHAEEQLGRNKIPMAYALALSEMLGVDMDLGIVQAKRAYRTSSDGVGRLLKRVSFDGVVLSGHHYMIVDDVITQGGTLADLRGFIESKGGKVILASTLNGKPNSAKLPITKATLGQLRKQAGKEIEQWWQEQFGYDFSQFTESEARYLAKQIHRYGIDAIRDILFASRP*	hallmark_hmm	common_virus	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0045	shell	direct	high	1754	0.999	GCA_009378755.1_00515
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	515931	516299	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	44718	45086	GCA_009378755_1_4_494	GCA_009378755_1_4_494	-	680235	.	.	hypothetical protein	MNEFIIPNSNSVSNDFNYSRTDLDAQEQQIAEFIKKGGKVINLDNSEQPKKKSAKKRDFNNQRINSKMHLVLCYLKRSGKRMTGLQIQEKFGISATTLGSQTRLLNAQASKQYNQNSNPSRK*	.	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0046	shell	direct	high	368	0.997	GCA_009378755.1_00516
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	516502	517152	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	45289	45939	GCA_009378755_1_4_495	GCA_009378755_1_4_495	+	680235	.	PDB:2FJR_A	Repressor-protein-CI	MPSERAKADQFPKMIRRYSKGQAKPRNDKMKLLTQCLGVPITWLDYGEGEMTKNNDKLAPITEWDDSTPLDDDEAEIPFYKDIAFACGHGAVNDEVTHETRKLRMGKRTLSNLGVMPENAFAVTAHDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVSRLERW*	common_virus_hmm	common_virus	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0047	shell	direct	high	650	0.998	GCA_009378755.1_00517
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	517204	518100	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	45991	46887	GCA_009378755_1_4_496	GCA_009378755_1_4_496	+	680235	.	PF14337.6	Domain of unknown function (DUF4393)	MTAETFHLIPAITGAVSGAASVGLLNGPLQTLQDIWFVVYGHKWHYKVESIKAQQAMNIQAMQNNIQTGIEKIPANALKDPNVAIIGPALEASRFHMNEENIREMFANLIVSAMDERKDGQMHHAFVEIIKSLSPLDAKNLEYLSQSGDAPIVNIVKEASYGFHMLHQHVFLGNRQVLDPNLITPSIDNLARLKLIDVTYTEHLTHEPVYDPFYHSALYQEKVSALGKELKLRRLDISKLQDLTRPVELDGKVLNKDERTEQIELINKELESKIEIQKGIIKLTAFGKNFLSVCSPTT*	hhsuite_tools	nonviral_gene	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0048	shell	direct	high	896	0.999	GCA_009378755.1_00518
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	518129	518368	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	46916	47155	GCA_009378755_1_4_497	GCA_009378755_1_4_497	-	680235	.	.	hypothetical protein	MRWVFYLKDGNMALAINIVLGANTVHFSRNIQKATQNAKKYLQGFALLAYMQAADKDKSVQDFLIIDPNPMTDEQKSLY*	.	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0049	shell	direct	moderate	207	0.863	GCA_009378755.1_00519
GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote	cenote	CDS	518397	518798	GCA_009378755.1	RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755.1_RCJS01000001.1	GCA_009378755.1|RCJS01000001.1	GCA_009378755_1_4	GCA_009378755_1_4@C27	47184	47585	GCA_009378755_1_4_498	GCA_009378755_1_4_498	-	680235	.	.	hypothetical protein	MMRLVMFGIKLLHSDDFIKSASSFGCFLAIMDKQTNKNHVYNLSTQVQRFELIDIDQVANLANSVQNGAISATVGTLLVRAGVLPALVALSIGAGLPNCTKDAYVCHIEFDDGKSAILQLSKHKYQQFLKHIA*	.	hypothetical_protein	C27	47585	471214	518799	GCA_009378755.1|RCJS01000001.1@region_471215_518799@tool_cenote_CDS_0050	shell	direct	high	401	0.998	GCA_009378755.1_00520