core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	1	470	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	1	471	GCA_009379015_1_15_1	GCA_009379015_1_15_1	+	9622	.	PFAM:PF06810.10	minor-structural-protein-	EKERLAEETARKKGDFETLEKQYQAKIQELNEQIAKRDKERDENLVKSHAQKLSSQLSDNPANQEILQILIEKRLSAKDGQLSVLDDSGAVSIMTLDDLAKQMQNCGKYDSLIIGTKSCGTGSNGQSAKRAGDYSEQERLALAHSNPALFNQLFLE*	hallmark_hmm	common_virus	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0001	shell	direct	moderate	338	0.719	GCA_009379015.1_00817
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	473	1489	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	474	1490	GCA_009379015_1_15_2	GCA_009379015_1_15_2	+	9622	.	PDB:6R3A_A	Major-Capsid-Protein	MAKLREIFNKNVTLSYQVKDNLQRSKFWQSGAFVSDARLRPLLNSGSLTFDVPFIHPIDGNLEANYSNTIMTDIAMPRSIEGSKSKGRLAVLNEGFIESRLESYLLGQSPLKLMAQMIDDYWLAQAENRAIATLFGLLNYDQSNGKKLSTDISKATADDSSGFDVHAFIDAEGTMDEMYQGKGLMVVHPLIATKMRKQRLLERVTTADDLKPIETYNGRTVIQSKRATVIGTGKNAKYVSYLLGAGAFAADMVAGHDDLELERTANTGNGSGHTTLWTRRNMLIHPQGFSFIGEPSTLTGGTKNEALSPSWTDLTTAANWRLDADADATPIRFLITNL*	hallmark_hmm	common_virus	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0002	shell	direct	high	1016	0.999	GCA_009379015.1_00818
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	1500	1703	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	1501	1704	GCA_009379015_1_15_3	GCA_009379015_1_15_3	+	9622	.	.	hypothetical protein	MSLPKDKVKPAFNFTYPSERAYFDESKSTLANAQVTDPAKSGADYGIKDPQVTEALTGTKSETAKVE*	.	hypothetical_protein	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0003	shell	direct	high	203	0.995	GCA_009379015.1_00819
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	1764	2123	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	1765	2124	GCA_009379015_1_15_4	GCA_009379015_1_15_4	+	9622	.	CDD:cd08053	Head-Tail-Connector-Protein	MITLDDLTDIDKADEQTVVIVNAWLNKHKLIPFKTIPEPIKQAGRYIAKAWLDGDLFATRTEGQVISKSSKAGDVSVSKTYADGQMGQAMSQNEQIALALIEPYLQQPLGMFGLPLVRV*	hallmark_hmm	common_virus	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0004	shell	direct	high	359	0.997	GCA_009379015.1_00820
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	2125	2481	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	2126	2482	GCA_009379015_1_15_5	GCA_009379015_1_15_5	+	9622	.	PFAM:PF12206.7	head-closure-Hc1	MGLKAEISTEITQAFDTDLKDAVKDFTGRRVILSDDDWAVNDTQVLSTINYSGRGVFTGFYAHEIDNKTIMQSDVKLICLQDELTEIPQIDDEINEMKIISISHDPAEVSFTIQLRGF*	phrogs_hmm	hypothetical_protein	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0005	persistent	direct	high	356	0.997	GCA_009379015.1_00821
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	2481	2828	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	2482	2829	GCA_009379015_1_15_6	GCA_009379015_1_15_6	+	9622	.	PFAM:PF04883.11	tail-component	MGIKWNKKLSIDPIADEIDKTYRKFAINCYNNVKTLSPVDTGRYRNAHHISIGSPSYAETGGGIELVLGIPKHTYPLIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSALSKLS*	hallmark_hmm	common_virus	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0006	persistent	direct	high	347	0.997	GCA_009379015.1_00822
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	2899	3078	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	2900	3079	GCA_009379015_1_15_7	GCA_009379015_1_15_7	+	9622	.	.	hypothetical protein	MNFNINMNLDKVMNAFSQNKTLRVWSYIIAVLVVIGLFFIFGGELFKGIADIIRATQGR*	.	hypothetical_protein	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0007	cloud	direct	moderate	143	0.794	GCA_009379015.1_00823
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	3078	3464	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	3079	3465	GCA_009379015_1_15_8	GCA_009379015_1_15_8	+	9622	.	PDB:2L25_A	tail-completion-protein	MNTAQIEQTLLAHIQKWEHFNTVVLARENRNFKPPKSLWGRVTILGGVNTICSVSDEPCILQQGTLVIQLFAPENVGTAEIKHKADSLANHLKAKQLGRLELLAPSIINVPSNDGIYQINVSVPYRYY*	hallmark_hmm	common_virus	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0008	cloud	direct	high	386	0.997	GCA_009379015.1_00824
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	3473	3991	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	3474	3992	GCA_009379015_1_15_9	GCA_009379015_1_15_9	+	9622	.	pfam11195	Protein of unknown function (DUF2829). This is a uncharacterized family of proteins found in bacteria and bacteriphages.	MKLITASVLTALLTSFVATRTVQATPLNRQEYNDLRGWQVPDNENPNDDGYLVVNAGVSERNVDGFDGYVSWLPKLAFEEQYKNDNLTFGQAVELLKGGKKVARKGWNGKGMYLLLATDINFKTKANLSDMQNENGELTVPSITMKTADNKFAVGWLASQTDMLAEDWVVVQ*	mmseqs_cdd	common_virus	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0009	shell	direct	high	518	0.998	GCA_009379015.1_00825
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	4026	4934	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	4027	4935	GCA_009379015_1_15_10	GCA_009379015_1_15_10	+	9622	.	PDB:5NGJ_B	Tail-tube-protein	MSSGAFVKTAYAKQTGETLPKTGWKTLPNISNGLTVATELTNSEMLSGSRMAKAGMVTSASVQGDIETELMFGAYDELIAAAFWSEWSAGASPNTLSVGATKHQFAIAKDFSDINVNHVFTGCVVSSFGLSVDTSSLIKLKFGMTGLGYQESKTESFAKTPTAQADTAKASGLSIGEIKVNGTKLDVCVESFSFELDNQTEVQKCLGDNIYGGNILAMLTNITGSMTIAYSQKAHEMISNQMTGATLSLELPIKFGNSKYVIKIPKFQVSGEIPSPSGTDLVTVDLSYTVVDESPVIEKHTA*	hallmark_hmm	common_virus	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0010	shell	direct	high	908	0.999	GCA_009379015.1_00826
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	5018	5164	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	5019	5165	GCA_009379015_1_15_11	GCA_009379015_1_15_11	+	9622	.	.	hypothetical protein	MEYITIIVDFMKYLIEKHGLFVIWLMVASLITLYKLDMILTAVHLFFN*	.	hypothetical_protein	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0011	shell	direct	high	146	0.993	GCA_009379015.1_00827
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	5215	5676	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	5216	5677	GCA_009379015_1_15_12	GCA_009379015_1_15_12	+	9622	.	PFAM:PF08809.10	Tail-assembly-chaperone	MAFDLTLLKKDAKINAKREIEFDGLELTLQIQASEAFKRAAAEVQKIANTPKKVTKDSLKRDSQDEIGEYEAMLFILGEYCISQWNVTADGEPLAINGDNFLILLDQGFEKDKLTQFITLLFETYASLSQEFEDNKAKLVKKSMTATNGKKSG*	phrogs_hmm	hypothetical_protein	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0012	shell	direct	high	461	0.998	GCA_009379015.1_00828
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	6042	6590	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	6043	6591	GCA_009379015_1_15_13	GCA_009379015_1_15_13	+	9622	.	.	hypothetical protein	MKKLLIAGILSLSSLTVSAAQNDVQVDINKFINASNVVENPFHADSALEYRFVNADNLNVRDYPVTGNVVGQLSRGEQVGVYAVSDSWVQISSGYTDSKWVSAAYLCEGAGCFEKSTKNTKNQRTANQSNSGSQPKNTTTKKSSAPKRTYSDGLCPCSGSYNCTGPRGGQYCITSGGNKRYR*	.	hypothetical_protein	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0013	shell	direct	high	548	0.998	GCA_009379015.1_00829
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	6602	7528	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	6603	7529	GCA_009379015_1_15_14	GCA_009379015_1_15_14	+	9622	.	PFAM:PF05766.11	HNH-endonuclease	MSDFFWLMAFIGFCFVILIVGIGIVVYIFNSISTLIKHKPKSYSEYKELRRKDREIAQENIKKLAGYKERVMAICDKNFVSEDEIAELTNYINTNNLSSKQIDIYAHTAFKKHYAAIVSDNLLTDEEMESLTRVAKFLKPDKQLVKKELEELSRSVSLKKIQSGILPEAYTSAIILRRGEIAHFVIPAQLLEERVISRGYKGGSQGVSIRIAKGITYRVGQNRGKLVSEKGTIPVDSGDFVITNRRLIFTGTKKSFSYDYKKLLAWNVYSDGILLNIDNASSRMLSFSNNIDSDAIHLALAYLVDQNT*	phrogs_hmm	hypothetical_protein	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0014	shell	direct	high	926	0.999	GCA_009379015.1_00830
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	7569	8207	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	7570	8208	GCA_009379015_1_15_15	GCA_009379015_1_15_15	+	9622	.	.	hypothetical protein	MKKLLKWFGIIFAVILGIGVIAVALETPEQKAEREAQAAEEKAQREAEYVAQIDDKEEVQPVNLGMTPQELGSGIDNIIKEISGVDPQLRSVSTNDNIYSVNLGEDIIWYGDLDKTGNIITSMYNVKISDNVEDRMMALLAFAIAKARTLSPDLPKEQVANSVAEVMSRAMKKFNQSLKPTTETQVIGDYKYIVNIYPDSKSMRFSVVHKDH*	.	hypothetical_protein	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0015	shell	direct	high	638	0.998	GCA_009379015.1_00831
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	8501	9343	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	8502	9344	GCA_009379015_1_15_16	GCA_009379015_1_15_16	+	9622	.	PFAM:PF10547.8	P22_AR-protein	MSNISIFNFESTKQVRTAIRNGGDIWFCLPDVANVLEISRSSDLLQVAKPAFVKNETSSKRGALDPAGVHKMYISYESGKKQVTFINEPNLYRVIFRSNKAEAVKFQNWVFDEVLPTIRKTGQYTIAFATKDERKPLVQAVNMLVGETGAIYSNVWKMIHQRFDVDCVDELTNEQVYQAVEYVHGLILQHGKKPVDDVLLYKVLVDSAVYLRDYAQLIKQMRDIRFFDENMGKNMYNFVADNINDIVRLTHDMKLTNKNGRPMFEKNRINYYGGAALIYR*	common_virus_hmm	common_virus	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0016	shell	direct	high	842	0.999	GCA_009379015.1_00833
GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote	cenote	CDS	9384	9620	GCA_009379015.1	NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015.1_NXCZ01000022.1	GCA_009379015.1|NXCZ01000022.1	GCA_009379015_1_15	GCA_009379015_1_15	9385	9621	GCA_009379015_1_15_17	GCA_009379015_1_15_17	+	9622	.	.	hypothetical protein	MGYWCLLNRSDWAFLLGEFMLNTYRLDIQVNADSANTALGNLKEHFDKIEQSSGKAGVGIDGFSDKADKASKSSKKAGD	.	hypothetical_protein	NaN	.	0	9622	GCA_009379015.1|NXCZ01000022.1@region_1_9622@tool_cenote_CDS_0017	.	unmatched_CDS	none	0	0	.
GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote	cenote	CDS	15	3719	GCA_009379015.1	NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015.1_NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015_1_18	GCA_009379015_1_18	16	3720	GCA_009379015_1_18_1	GCA_009379015_1_18_1	-	8652	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MGGFLLGEFMSNTYRLDIQVNADSANTALGNLKEHFDKIEQSSGKAGVGINGFSDKADKASKSSKKAGDGAKKFGDDAKKAGDDVDGLKRKTDGLKNAFGALKGVMFTAFAVAGVGGIIATADQMQNLASQIRLATDSTEQFHAVQTELRAIANEQRSSFDAVVDLYSNSQRSLSALGKSQQDVINFTRNMTMAMNVGGRSAQAQAAALTQLGQALASGVLRGDEFNSVAEQAPILMDLIAKEMGVTSNAIRDLAKDGKITADVVYNAVAKATDSLSAMSAKMPTTVSQALQVIKNEYNYLIDDIMNQNSMMSQNIANAVLWAAEHFRTLVSAAAMVGVVWLGIIAKNSALVTSFVTLTGATVASTKASVANAFSVQGQITAYNALSTRLMLLRLTKAHYIDLTKTAIATTAVYARSLVGLATSFDRTTLATKAATLASIGWTKTKRGAIGVGILATRTITGLGGAFMSLGRIITAHPIIAIGAVLASVVVSTHGVTGAINSLSDAFGVVTLMAKDFIGFIGDGFSMAWDTVSAFADNMLAKVGDTTKGSTGAFSNFFATSHGGFVGMLQVAAKTFDLINAAAKAGAKNALHNFVQLGKTTKNIFYGIGNAFVSIIEMMINNAARKIDFLSTKANSMAKVLGIEASIPLIGTVSLGRLQYDNVDFGAVASIADNNTNSAYNYVTQLADKATQATKANASLADSYNSVGSAATNAANATKNASDKTKKTADDITDAINELDALVAKLHHESHQLLNNSLSEMIFETDNKLGKFYEATEAQKQKLKDLAGQKDLYTATKKANDELKSLARTIKLVGKQTPFDELAHDLFDVRHEMSVLNGETKNNLLLWAANAENAKLAYELNQRSSQIKHDAMLSNHASSYQRELLNIERQNNQEIQKYAGLKQDGTEHIYEQIKANLQLHATEQKKLATHKAYMQLVFDSRSEEEKRLDILDEQLTILAEQHRLHGTDVSAQSRQLMSELLDLPKPDSSAFDELNFEYETRLNRLGRFMDKQKELYKDNEDALTQIAQEGVAARIAIDEAYQDAKRTLILSQSENIFESLASITKDSLGEQSRLYRAMFAMQQGFAIAQAGIAMQQAISQGLAKGFPEGLADMALAASHGARIVSAIKSVVMPVGQAHDGIMCVPKAGTWNLEKGERVLPRHTAQALDKKLDGMQNGNAGQVINVHVTVNSDGSNVQADTQMGKTMGEAMAKIARQVVIQESKQNGHLDRLYRR*	hallmark_hmm	common_virus	NaN	.	0	8652	GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote_CDS_0001	shell	direct	high	3704	1.0	GCA_009379015.1_00844
GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote	cenote	CDS	3752	4588	GCA_009379015.1	NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015.1_NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015_1_18	GCA_009379015_1_18	3753	4589	GCA_009379015_1_18_2	GCA_009379015_1_18_2	-	8652	.	.	hypothetical protein	MAQELPTTESLFDFLYLDSIKIRSFYAQLTGFGSLASIKANNALNSSLASEGALGVNAMAKIDAKVNYATGENQSSEKTYDATPTLPREMIDKLDELGFISRELGENSAGNLVLLNGVLSITDIETLQNLLEPTMHFATEEECKQLYGDRKRQAVKKKLEENKPVVQLIKAIPYALEARLKVGEDMVWMTLNRGEMVGNPHDINLKHGKVLFGEYYVLGVLDAIPNDDMNIDMTTGSFGDVILELSQSLKETMGRNTSSYGITPIAIFRVIRTNQQAK*	.	hypothetical_protein	NaN	.	0	8652	GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote_CDS_0002	shell	direct	high	836	0.999	GCA_009379015.1_00845
GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote	cenote	CDS	4551	4733	GCA_009379015.1	NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015.1_NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015_1_18	GCA_009379015_1_18	4552	4734	GCA_009379015_1_18_3	GCA_009379015_1_18_3	-	8652	.	.	hypothetical protein	MQDNAKKSDATHHSAQLLRDMFSCLNQAMSRETEKFHQEQKKVKEEINRGARITNHRISL*	.	hypothetical_protein	NaN	.	0	8652	GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote_CDS_0003	shell	direct	high	182	0.995	GCA_009379015.1_00846
GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote	cenote	CDS	4866	5078	GCA_009379015.1	NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015.1_NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015_1_18	GCA_009379015_1_18	4867	5079	GCA_009379015_1_18_4	GCA_009379015_1_18_4	-	8652	.	.	hypothetical protein	MIKPDAKEQGEFQITCHQATNQAMNYLHGLHAEIKRLGGVAPSLDIDEDEIARAIITRMVQGKRFMVNLD*	.	hypothetical_protein	NaN	.	0	8652	GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote_CDS_0004	shell	direct	high	212	0.995	GCA_009379015.1_00847
GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote	cenote	CDS	5239	5496	GCA_009379015.1	NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015.1_NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015_1_18	GCA_009379015_1_18	5240	5497	GCA_009379015_1_18_5	GCA_009379015_1_18_5	-	8652	.	.	hypothetical protein	MGIDLPTPAVSDVYVDNIFMVFALANRARRYTQGIALPLSVRDVCDVCDVCEHYQSLLPRAWLFELIFMLDDLWLDEYNKSSKKT*	.	hypothetical_protein	NaN	.	0	8652	GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote_CDS_0005	.	unmatched_CDS	none	0	0	.
GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote	cenote	CDS	5532	5993	GCA_009379015.1	NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015.1_NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015_1_18	GCA_009379015_1_18	5533	5994	GCA_009379015_1_18_6	GCA_009379015_1_18_6	-	8652	.	.	hypothetical protein	MAFDLTLLKKDAKMSAKREIEFDGLELTLEIQASEAFKRAAAEVQKIANTPKKVTKDSLKRGNQDEIGEYEAMLFILGEYCISQWNVTADGEPLAINGDNFLILLDQGFEKDKLTQFITLLFETYASLSQEFEDNKAKLVKKSTTATNGKKSG*	.	hypothetical_protein	NaN	.	0	8652	GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote_CDS_0006	shell	direct	high	461	0.998	GCA_009379015.1_00848
GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote	cenote	CDS	6044	6190	GCA_009379015.1	NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015.1_NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015_1_18	GCA_009379015_1_18	6045	6191	GCA_009379015_1_18_7	GCA_009379015_1_18_7	-	8652	.	.	hypothetical protein	MEYITIIVDFMKYLIEKHGLFVIWLMVASLITLYKLDMILTAVHLFFN*	.	hypothetical_protein	NaN	.	0	8652	GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote_CDS_0007	shell	direct	high	146	0.993	GCA_009379015.1_00849
GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote	cenote	CDS	6274	7182	GCA_009379015.1	NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015.1_NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015_1_18	GCA_009379015_1_18	6275	7183	GCA_009379015_1_18_8	GCA_009379015_1_18_8	-	8652	.	PDB:5NGJ_B	Tail-tube-protein	MSSGAFVKTAYAKQTGETLPKTGWKTLPNISNGLTVATELTNSEMLSGSRMAKAGMVTSASVQGDIETELMFGAYDELLAAAFWSEWSSGASPNTLSVGATKHQFAIAKDFSDINVNHVFTGCVVSSFGLSVDTSSLIKLKFGMTGLGYQESKTTSFAKTPTAQADTAKASGLSIGEIKVNGTKLDVCVESFSFELDNQTEVQKCLGDNIYGGNILAMLTNITGSMTIAYSQKAHEMISNQMTGTTLSLELPIKFGNSKYVIKIPKFQVSGEIPSPSGTDLVTVDLSYTVVDESPVIEKHTA*	hallmark_hmm	common_virus	NaN	.	0	8652	GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote_CDS_0008	shell	direct	high	908	0.999	GCA_009379015.1_00850
GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote	cenote	CDS	7186	7374	GCA_009379015.1	NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015.1_NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015_1_18	GCA_009379015_1_18	7187	7375	GCA_009379015_1_18_9	GCA_009379015_1_18_9	-	8652	.	.	hypothetical protein	MPKNRHRRLLQLYGEINELGAILDAPKPKDIHPHEWILMKDQLYYMRQYYRVLKQRTDDTEN*	.	hypothetical_protein	NaN	.	0	8652	GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote_CDS_0009	shell	direct	high	188	0.995	GCA_009379015.1_00851
GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote	cenote	CDS	7374	7757	GCA_009379015.1	NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015.1_NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015_1_18	GCA_009379015_1_18	7375	7758	GCA_009379015_1_18_10	GCA_009379015_1_18_10	-	8652	.	PDB:2L25_A	tail-completion-protein	MNSFHIEQTLLTHIKAWEHFDDVPLAKENRNFKPPDGIWGRVTILGGVNQVRSISDKPDIMQQGTLVIQLFCPQDLGTVAIKQKADSLANHLQTRRFGRLETLTASIINAGFHDYYQINVSVAWRYY*	hallmark_hmm	common_virus	NaN	.	0	8652	GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote_CDS_0010	shell	direct	high	383	0.997	GCA_009379015.1_00852
GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote	cenote	CDS	8123	8323	GCA_009379015.1	NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015.1_NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015_1_18	GCA_009379015_1_18	8124	8324	GCA_009379015_1_18_11	GCA_009379015_1_18_11	+	8652	.	PFAM:PF16777.4	transcriptional-regulator	MPKITSTPKSQTQRTADSDAKRGFKTKGLKLHIDDISLIENLSKRLNIPQNQLIMDAVRAYQRQLD*	phrogs_hmm	hypothetical_protein	NaN	.	0	8652	GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote_CDS_0011	shell	direct	high	200	0.995	GCA_009379015.1_00853
GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote	cenote	CDS	8320	8649	GCA_009379015.1	NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015.1_NXCZ01000025.1	GCA_009379015.1|NXCZ01000025.1	GCA_009379015_1_18	GCA_009379015_1_18	8321	8650	GCA_009379015_1_18_12	GCA_009379015_1_18_12	-	8652	.	PFAM:PF04883.11	tail-component	KKLSIEPIADKIDATYRKFAIDCYNNVIALSPVRKGRYKNAHHISIGSPSYAETGGGIELVLGIPKHTYPLIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSAIANLG*	hallmark_hmm	common_virus	NaN	.	0	8652	GCA_009379015.1|NXCZ01000025.1@region_1_8652@tool_cenote_CDS_0012	persistent	direct	moderate	234	0.709	GCA_009379015.1_00854
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	79962	81170	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	1	1209	GCA_009379015_1_23_76	GCA_009379015_1_23_76	+	120399	.	COG4536	Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains [Inorganic ion transport and metabolism]. 	MPRPRTQNLANLSFVSIAIFTVSVAAIFIPSTAFAAFELGGTPTNLALLIFFICLSLVVSFLCSISEATLLTMTPSYIDTLEEDNPKGAALLKSVKVDHIEKSISAILTLNTVAHTLGSLGAGAQAVIVFGNAWFGVFSGVMTLIILIGTEIIPKTIGTVYWRRFAMPVAYYVRTINVALLPVIWVTEKISRMLTRGNQEIGFNRHEFLALANQGESLGQMSEMETRIIKNSLALGMINVEDILTPRSVVSAFDENMTVGDVFASYPKLPFSRFPIFDEDLDNATGFILKSDLLIAKANQEIHTPIKQFRRDINFVFAKMKLFDLLDLMLKEQVHIALAVGEFGEVKGLVSLEDVLETLLGLEIVDEFDRVDDMQILARQLMDKRMARLGAKLEEDAPFDEK*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0001	persistent	direct	high	1208	0.999	GCA_009379015.1_00976
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	81276	81881	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	1315	1920	GCA_009379015_1_23_77	GCA_009379015_1_23_77	+	120399	.	PF13474.6	SnoaL-like domain	MAYSFIDKYIEYKGWFMKYSTRSVLRKAVAASMLTAVIRSAIQLTGRSFGKGASIGLFIGMIGVQSLITTNAYAISEQDVSRYASSMSSAANAQNIAQISRLIDDDAIISLSRGGKTTSLDKEGYLQLLQKSWATSSDYRYRINVADVVVTGNQARAQIVTTETWTQDGKPVTIKTASRATFSQVGNNAVLLRSVSQVTVD*	hhsuite_tools	hypothetical_protein	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0002	persistent	direct	moderate	557	0.919	GCA_009379015.1_00977
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	82076	84955	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	2115	4994	GCA_009379015_1_23_78	GCA_009379015_1_23_78	+	120399	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MKKHTKSSISTQILKPLSLAISSCILVACSSTGTPAKPVSQTPKPIPQAKPSQQINISSGNTNLGNTKTGADVDVLDVQMLDALEALLQATDMSMVEGDELAIQRYGNLWDRVRRGYRINEMTNARIEAQKSWFYTRQTYLDRLTARASRYLHHTVAEAERRGIPSELALLPIIESSYDPTATSNAAAAGLWQFIPSTGRIYGLNQSATYDGRRDVIESTRAAYDFLTSLYNQFGSWELALAAYNAGPGRVSRAIKANQDQGLPTDYWSLKLPTETMNYVPRFLAVAQIVRSPNTYGINLPAIANHSHFRTVPVNYGVSLSEVATVTGLSVSELRLLNPALLNFTVDEIGPNRIVIPDSLPNQIDNQLASLKGYGFGGDYIATAPAQSITYVVPKSGATANTSSQQELIAANTLPTTIAQVTPNNTIVQEPALSKSEINLIAAEIQKTSPEVPAISPQDGNIQLNAVQTGQSVLDARGETKMLSFADGPKTQAVAQQPTQPVQVAVTPPAQPVQITVVSPTPEPISQPKPQLPPVTASIPVVSSPPVLVPPPPSRPRPEPASRPKPKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQTPSRQSTSTANTNSATHKVSAGESLTAIARKYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKTANTTMANTSSSPSVNKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQQTSQATQSTKNNQSTQSTATHRVQSGESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKAESSTPSRLGNTKNNSTRTPANTNIGITENYTVRSGDSLTMLSNRFGVAIGDLATANGLASNANLRIGQTLKVPKLTTTYTVKAGDGLIALARRYGISTQELAKMNNLEPTADLRIGQVLTVPNK*	common_virus_hmm	common_virus	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0003	persistent	direct	high	2879	1.0	GCA_009379015.1_00978
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	85112	86944	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	5151	6983	GCA_009379015_1_23_79	GCA_009379015_1_23_79	-	120399	.	COG1274	Phosphoenolpyruvate carboxykinase, GTP-dependent [Energy production and conversion]. 	MTAKITAPDFVRHQALIHWVAEIAALTKPAAIEWCDGSEEENQRLIDLMIKNGTMIKLDEDKHPNSYLAFSDPTDVARVEDRTYICSKEEIDAGATNNWVEPSQMRTKLNDLFDGCMAGRTMYVVPFSMGPLGSHIAHIGIEITDSPYVVVSMRKMARMGKEVYDVLGADGEYVPCVHTVGSPLTEGQKDVAWPCNDDKYIVHFPETREIWSYGSGYGGNALLGKKCLALRIASAMGREQGWLAEHMLILGVTNPQGKKHYIAAAFPSACGKTNFAMLIPPAGYEGWKVETVGDDIAWIKPSEDGKLYAINPEAGFFGVAPGTNTKTNSNCMSTLGSDVIYTNVAVTDDGEVWWEGKTKETPANLTNWKREPHTGAERAAHANARFTVSAKQCPSIDPQWENPEGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAATMGSETTAAATGQQGVVRRDPFAMLPFTGYNMADYFNHWLQMGENLGKKAKAAGNQLPKMFKVNWFRRDTNGDFVWPGFGQNMRVLQWIIERCEGTANAVRTPIGLVPTYDDINWDQSDFTKAQYELVTSQDKDAWIKELESHAELFDKLGERMPTALKAHNAKLKADIEQA*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0004	persistent	direct	high	1832	0.999	GCA_009379015.1_00979
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	87242	88660	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	7281	8699	GCA_009379015_1_23_80	GCA_009379015_1_23_80	+	120399	.	PDB:3BH0_A	Helicase-ATPase	MAKAKSSYICQNCGAIYGKWAGQCTDCGEWNTLVEAPNTSLPHHHKSKTTTAPRKTANYAGAVSAVMTLDHVGVTLETRMPTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGDSLSGSALYITGEESLSQVAMRAVRLGLPTDRLRVLAETNVDTICAALTTEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDSRFRMIRAIKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIHTSGMDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPVRLCVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRANAPAANHPQFKNIQIIAVDRLDEAIYQAFEINAG*	rep_hall_hmm	common_virus	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0005	persistent	direct	high	1418	0.999	GCA_009379015.1_00980
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	88702	89421	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	8741	9460	GCA_009379015_1_23_81	GCA_009379015_1_23_81	-	120399	.	COG1118	ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. 	MSIKIQNIHKTFGDFVALGEISIDISTGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYFDSIDVTDIPVQHRGIGFVFQQYALFRHQTVAQNIAFGLTLLPRNTRPSANTIDRRVDELLDLVQLSHTKTRYPHELSGGQRQRVALARALATEPKLLLLDEPFGALDAKVRKSLRDSLKDIQREIGITSILVTHDQEEAQAISDKIVIMNHGQIEQIGTPSKLFAQPSSDFVVDFLGL*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0006	persistent	direct	high	719	0.999	GCA_009379015.1_00981
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	89514	90353	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	9553	10392	GCA_009379015_1_23_82	GCA_009379015_1_23_82	-	120399	.	COG4208	ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. 	MSHTSSYSYQKNPATRDKPWVRWSLIGIAVVFMGVMLVVPLVSVFYEALKEGWQAYQAALLEPDALASIKLTLITAAIILPINTIIGVALAYLITRHQFRGKFVITTLLDLPFAVSPVVAGLMFVLVFGANTRLGGYLESMGIQVIFATTGIVLATLFVTFAFIARELIPLMQAQGDSEEQAALTLGANGWQMFWKVTLPNIKWALLYGIILTNARAMGEFGAVSVVSGHIRGETNTVPLMIEIAYNEYAFTLAFALSSLLALLALITLVAQGLMSHKK*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0007	persistent	direct	high	839	0.999	GCA_009379015.1_00982
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	90398	91276	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	10437	11315	GCA_009379015_1_23_83	GCA_009379015_1_23_83	-	120399	.	TIGR02139	sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]	MLNQPIPLKNRARRVMPFFGLSMGISIFALGLLVILPFLMMILTTLQMSFDDIMQTIREPQVFAAIKLSLSMAMLATLTNLIFGTLAAWVLVRYEFWGKSFLNALVDLPFALPTAVTGIALATLYAPNGLFGQWFTHLGILLFNEPIKIAFTPIGIWLALVVVSFPFIVRAVQPVLAELSVEFEEAAAVMGAGRLTTFCRVILPEISPAMLIGAGMMFARATGEYGSVIFIAGNIPMQSEILPLIIVSKLEQFDVAGAACVSLFMLLISLVFLFTMNFIQWKLSARLGAKTN*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0008	persistent	direct	high	878	0.999	GCA_009379015.1_00983
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	91626	92066	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	11665	12105	GCA_009379015_1_23_84	GCA_009379015_1_23_84	+	120399	.	.	hypothetical protein	MMMKNKWMRGLAILVLSLPTVTYAKTAAPKASEAPEVSLTQEEQMAIDFCDFSAYGVMHIAGDHQGGATKSEALTNHDKRMAELKDLIDLDPETATMLDKYWKGAIDRIFQESVQKTDAEKQAFVMGVGESSFYSCLDQVLKTPKN*	.	hypothetical_protein	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0009	persistent	direct	high	440	0.998	GCA_009379015.1_00984
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	92096	93271	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	12135	13310	GCA_009379015_1_23_85	GCA_009379015_1_23_85	+	120399	.	PDB:1OYW_A	ATP-dependent-DNA-helicase	MTETTVKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKVTMLSGDVAQQKRERYLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDAFNLPALERHIDQKFKLNQFEFLDEHK*	common_virus_hmm	common_virus	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0010	persistent	direct	high	1175	0.999	GCA_009379015.1_00985
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	93285	94460	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	13324	14499	GCA_009379015_1_23_86	GCA_009379015_1_23_86	+	120399	.	COG0635	Coproporphyrinogen III oxidase or related Fe-S oxidoreductase [Coenzyme transport and metabolism]. 	MYPDLLDPAHIPLSLYIHIPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIGGGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTIGINRLSIGVQSFDHNALTVLGRIHNPDQASNAIRAARIAGFDRVNADLMYGLPNQNPSKAVNDIQTAIDAGATHLSWYQLTIEPNTTFYCTPPQLPDEEIMAEIETLGQSVLTKHGFYNYEVSAWHGPNDAPCQHNLNYWQFGDYLAIGAGAHGKLTLKNHPDYQDGIYRYQKSRQPKDYLAFEDAPKMVNFERISDDNLPFEFMMNALRLKDGVSTDVFETRTGLLISTIDNEMLPLQHQGLMVLDPLRIAPTRLGFRYVNYLVSQFI*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0011	persistent	direct	high	1176	1.0	GCA_009379015.1_00986
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	94542	94682	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	14581	14721	GCA_009379015_1_23_87	GCA_009379015_1_23_87	-	120399	.	COG5510	Predicted small secreted protein  [Function unknown]. 	MKKVLVASIAAVVVLTGCNAIKGFGKDVSKAGEAVSDTAQKVEKKI*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0012	persistent	direct	high	140	0.993	GCA_009379015.1_00987
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	94930	95475	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	14969	15514	GCA_009379015_1_23_88	GCA_009379015_1_23_88	+	120399	.	COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]. 	MSQFSDALIHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEEVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQLGFVGDIGQSVGYHKPTSR*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0013	persistent	direct	high	545	0.998	GCA_009379015.1_00988
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	95591	95782	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	15630	15821	GCA_009379015_1_23_89	GCA_009379015_1_23_89	-	120399	.	.	hypothetical protein	MTDSTTSPARQKALANIALVISHTEPHVLDALNQIMAHKDCSKAMAIKVALVEYANTLSQTSR*	.	hypothetical_protein	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0014	shell	direct	high	191	0.995	GCA_009379015.1_00989
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	96185	96589	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	16224	16628	GCA_009379015_1_23_90	GCA_009379015_1_23_90	-	120399	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MLYPIAILKGGDKTAHGIFFPDVPNLASACDELQDIHKMALECLDVHFSGLVADGEEIPLPTNFDAHTQNSQFDGMMWAWVDVDLSKYDVKSHKINITLPNHLIAKIDEKVAAHKSLYKSRSNYLAQLAMADLA*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0015	shell	direct	high	404	0.998	GCA_009379015.1_00990
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	96801	96998	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	16840	17037	GCA_009379015_1_23_91	GCA_009379015_1_23_91	-	120399	.	PFAM:PF16777.4	transcriptional-regulator	MPKIVANPKTRAQIQKDSDARRGVKPIGFKVPIEFAELLDELAKQSGKTKNIIIMEAVELWAKQL*	phrogs_hmm	hypothetical_protein	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0016	persistent	direct	high	197	0.995	GCA_009379015.1_00991
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	97576	98013	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	17615	18052	GCA_009379015_1_23_92	GCA_009379015_1_23_92	+	120399	.	6AF2_D	HIT domain-containing protein	MFQLHPTLAKDTFLVGDFPLSTVRLMNDCQFPWLILVPRVSGIKEIYELSAADQVQFLRESSWVSSQMAKIFGADKMNVAALGNQVLQLHFHHIVRYQNDAAWPNPVWGHEAMPYTQEVLSHMQQTLMMALRGHHQMPFDWKMDV*	hhsuite_tools	hypothetical_protein	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0017	persistent	direct	high	437	0.998	GCA_009379015.1_00992
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	98167	98829	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	18206	18868	GCA_009379015_1_23_93	GCA_009379015_1_23_93	+	120399	.	PRK00043	thiamine phosphate synthase. 	MTLQSIDKVPKLYLLTNDDELTTLLDKLERVFDTGAVSLLQVRRKSTLKLYDLATVYREAEMIVSLANDYDIKVVMNDSLELASHFGTGLHLGQRDGSVRVAREILGDHVVIGRTCHTDLALFKEAKREGATYGAMGTAFASITKPRAKIISKDILKKACELDFPLCVIGGITLENIHQLRDKLNGAAIDYIAVTADIMGHSVDTIADKCLAWQQKLNTW*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0018	persistent	direct	high	662	0.998	GCA_009379015.1_00993
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	98834	102388	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	18873	22427	GCA_009379015_1_23_94	GCA_009379015_1_23_94	+	120399	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MIDTFKPKLDLPTKANFKTTLPLLGGADLSFWLALAAKSEERLIVMIANHQNELNQLDTELSFFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGVLLVSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQAGMNTHHAQKLPSSAKITEFRLLPAREFPLEAGKEMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQVLKAYPRVVINTNHDTAKIGAMESLPPPILPINHQAAKPLSELLSFIKSGQVPILLVAESAGRREIILELLKDKVAVKVVDNYQEFINNLDDFNTDCIALSVAPIERGLWLRDETGGLCIISETQIFGRQVLQTRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIAIPPARRLAIKTFLLPKSDETIKEAILREILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATNAIKQGKTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRTEMIDRFGTLPTQTQNLFAVHRIRIRAKALGITKIDATQTTISIEFRADTPIDGLAIIKLIQSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESTKTA*	common_virus_hmm	common_virus	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0019	persistent	direct	high	3554	1.0	GCA_009379015.1_00994
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	102385	102654	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	22424	22693	GCA_009379015_1_23_95	GCA_009379015_1_23_95	-	120399	.	.	hypothetical protein	MPMSIPTKVTVGYTQRRLFMVSMTVGLISLSGCQHIQVTKSPIPIIIHSHTKSPSQPKPTPTDAVPTKNRPISPPTQKSNTIFILEDWF*	.	hypothetical_protein	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0020	persistent	ambiguous	low	5	0.019	GCA_009379015.1_00994
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	102654	103916	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	22693	23955	GCA_009379015_1_23_96	GCA_009379015_1_23_96	-	120399	.	TIGR02800	tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MKSPITKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLSLAGLGTTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTVNGSIITPTFSPDGLSIAYSVQTKNNLPIIYIVSVSGGTPKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGTRRQSLYRYDFGTTHSTQIASYATNPRLSPDGSKLVYLSGGQIIIANTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRTIPTSGTVRDPIWSK*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0021	persistent	direct	high	1262	0.999	GCA_009379015.1_00995
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	103933	104733	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	23972	24772	GCA_009379015_1_23_97	GCA_009379015_1_23_97	-	120399	.	4G7X_B	Putative uncharacterized protein, TolA protein	MRLSDNHPTVNFDKSALILPILASVLLHTVIIIAVAAPLITPPTKPNTTIQTALVGQEAFNRAKTALSNHHANQNKPTATNTSSTITANDNDNAFMQAQNQHRYHPQVSTSATTTQAYHPPPNSAPFESNSPNIQNQPTNAHAKLAEYSNHVSDLEQSNHTESTPSRAQINAAITSVKHRIEAIWQRYPKQPNQTITFQVNMNQQGDVTSIQFGGGHPDLRESVEAAVYAAAPFYELGGMRDSIRLQFTTEQLIMDNNQTTNEPNH*	hhsuite_tools	hypothetical_protein	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0022	persistent	direct	high	800	0.999	GCA_009379015.1_00996
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	104764	105198	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	24803	25237	GCA_009379015_1_23_98	GCA_009379015_1_23_98	-	120399	.	TIGR02801	TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MVTSNRFARRQRPLNSDMNVVPYIDVMLVLLVIFIVTAPMLATGIEVSLPKEQTKPITQADKLPVIVSIQADGNLYVSHKNAIDVPITPDKLDTLLRQMHQDNTDLQVMVNADADNAYSRIMQIMALIQNVGITQVSLLSESVQ*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0023	persistent	direct	high	434	0.998	GCA_009379015.1_00997
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	105224	105913	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	25263	25952	GCA_009379015_1_23_99	GCA_009379015_1_23_99	-	120399	.	TIGR02796	TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MNESISLISLVIEASVVVKLVMAILLLLSTISWVLIFHLGTKIGGIAKFDERFERWFWTDDIDHQLSVVQAESERAGLELIFYTGFYDQNHQDQDSSLSDDKKVQIVERRLRMALGSEQVHLEKGLSTLATIGSVSPYIGLFGTVWGIMNAFIGLGQAESVGLATVAPSIAEALIATALGLFAAIPATMAYNHFATKSNTLYENRSLFCEGLISALVTNLAKKNTASTL*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0024	persistent	direct	high	689	0.999	GCA_009379015.1_00998
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	106190	110362	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	26229	30401	GCA_009379015_1_23_100	GCA_009379015_1_23_100	+	120399	.	PDB:5XDR_A	Replicative-polyprotein	MHSTDNLPVLAKDRHYLNKLKQKMNSTTGDLKTKCKIRYDAIYERSAEQVANRMDSIPKNLSEKLNHDLPVTAEADTLIQAIRDHQVVIIAGETGSGKTTQLPKLAMMAGRGITGQIGHTQPRRLAARSVAMRIAEELGEPLGQTVSFKIRFTEEGGKHSIVKLMTDGVLLAELGSDKFLANYDTIIIDEAHERSLNIDFIMGYLKRLLPKRPDLKVIITSATLDTQRFSDYFAANGKPAPVYIVEGRSYPVEVRYHPLTDTIVSSQDDDAFDDIEDNLPRALTAAVNECFEDARTKGHPDQADILIFAATEAEIRELQEVLMLYAPAHTEILPLFARQSYGEQQKIFAPSGKGRRIIIATNVAETALTVPNIRYVIDLGFARISRYNYRSRIQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEEDFNSRPEFTEPEILRTNLASVILQMERLQLGDVNAFDFITPPDLRLVNDGRKLLIELGALDDKSFTKTRAKKGRTQLSSLTKIGQQMAKMPIDPRLARMLVAGDTFDCLADILIIVSALAVQDVRERPINKHAQADQKHALFRKEDSDFLFYLELFAALFDQHSTNDNQALSSNARRNFAKKHYLSYARIREWQKTHRQLSEMMAEMGFEINKQKNHQNDVKIDTKKGVRLSLKSGTSHQKSIKQALVGAKALKNDIDNKTSIHYANIHRALLSALLSFVAHKTDTVGEYLMARSQKARIFPASTLHKKGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPNLLKYHYFEPHWSKKAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDALVANQYGMQMKFLADNANKIKDIERIEDKLRRRDLLVDEESLYQFYDAKIPNHIASRKSFEEFYHDAENKTPNFLHFSDEDVLNEAVDDSREFPESWHLGGLRLPLSYVFDPAADNDGVTVHVPIKALAQVDPVALLWGISGWRYELVLQLLKTLPKEIRRQIVPIPDTCQKIFHQLDASSKMGLLDQLVAALKTLGVQAHAQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARHRKASVQSIAIEQGVHHHFPNHFNFVKNKHTSGIVMQEFSALKADAAQSAVFIATFTEINAALAEHKKGVLTLIKGHLGAKQKQLTGQIDKAFKLAFAPLGDLEKLKNIVVHATLEACLYDYGPDFDHKPVSQHVDHARAAIAGLITQNNQWLISHLPLDEREFDDCQDLILKNFLLVGQEILRNLKEIYTAWQTARGKLLMLDQEIFGENIEDIEDQLDDLQLANFVYQTDYRHWRQYPRYLQALNIRLDRLQHNLEADLDAVYLLDTHMERLARCVKNPKFAEYRWLVEEYRINLFAQPMKTVQPVSAKRLETLWANLTTQ*	common_virus_hmm	common_virus	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0025	persistent	direct	high	4172	1.0	GCA_009379015.1_00999
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	110624	112120	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	30663	32159	GCA_009379015_1_23_101	GCA_009379015_1_23_101	+	120399	.	1YC9_A	Vibrio cholerae, outer membrane protein	MSIKCQLVAIDNIIKPCYDKILNFVYFSTMKMPYFLLLGLLLAQQADADYSLLDAQKQLMSSSPAIQASHALYQADVLQAESLQKLHYPRISLNAHAFVLQQNSSIPLDHIKEQTAQHINTHFDHRFGSAPDGLLDALHNSTQTALDRLPDHQDVKLRHDGITPNITATMPIYTGGLISSSKNIANLQAQRGKFGLQERISLAKLNLIRHYFNVQLQKQLTDTQQNMLSAMQLHVDNAYKLEQQGFISRGQRMQFEVARNQVQRLYQSTQNQHQNSIYELAVLLGLPHIEPLSTPLFINTQHRPNWQALLKDSQNTPLNQKLKTDILLADENIALRQSTKKPKIAAVARYTLDDKPDWFAGVAVSYNLFLGIDRDKQIGAAHLQKQAAKLGHEQVNEHITTTMHTAYGEMVLAQKTHALLQQNHQAAKENLRIQTLSFQEGFGTVAGVVDAQSALSQIDSETALNAYRYLLALATLLHYTGTIDDFDDYLSLDDAHKL*	hhsuite_tools	hypothetical_protein	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0026	persistent	direct	high	1496	0.999	GCA_009379015.1_01000
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	112167	113330	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	32206	33369	GCA_009379015_1_23_102	GCA_009379015_1_23_102	+	120399	.	COG1566	Multidrug resistance efflux pump [Defense mechanisms]. 	MTDKTDDVKPDTDGNHPKKQKPHTQAKSKPRPLALFLLLALIGSVLLVIIFGLIQSYGTPQNLPTANAIGSTNEPPKGVIAHIRQKIAGSATFSIQGRVEGETVNISTKLPSRVAAIYVKEGQAVRAGEPLVQLISPEIDAKKQQAAAMLQSALAFQSSTDRGTRQENVDTLYANWQSAKAQATLAEESYRRGEYLYQEGVISRQRRDEMRAAKQSSAQIAHAAQQQYLKAQRGRTDELKSSADAQVQIARAAVAEADALDAETMLYAPIDGTVSKIYIQSSELVMPAVPVMSLLDNHPTITISVQENQYSHVHALPKLTGFIPALNKTADFKIVHTDDEGEFATIKNTRQTGGYDIHSFKTKLEPITPIEGLKVGMSVIFDITVLP*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0027	persistent	direct	high	1163	0.999	GCA_009379015.1_01001
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	113358	114536	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	33397	34575	GCA_009379015_1_23_103	GCA_009379015_1_23_103	+	120399	.	PF12698.7	ABC-2 family transporter protein	MIVRFIRAFCQAFLRELNRLSCNRFDLAMVMIAPLVIIVLFGAMFYHGKAHHLPVALVDEDNSELSHLIYQHIHHNETIKIVLILDNVQDAHHAINRLDVGGYIHIPKDAQNRLVRGENTGIHIAYNQSFFSIGSAISSALSKSTKGGIAKFIQTKHLTGVLPHLSGNMPHVKISVLFNPNLSYEFFLEPFLVAAVLHLLLCCLVAHAIGQEFHEHSVHEWLCHSPFGALFGKISVYVLIISLWHGLWQAWLIGVSGWFVAGSLFVLIIGQLLFYLAYALFGAMVVLKTQNINKSYGILAVYGGSSMSFAGVTLPLNNAPSFTQFWSQIIPFTPFARLQVEQWVIGSPFIITLAHLNSLLIFVLIFAIASLLLLRHIKKTLIAIPNTPKDDS*	hhsuite_tools	hypothetical_protein	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0028	persistent	direct	high	1178	0.999	GCA_009379015.1_01002
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	114536	115636	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	34575	35675	GCA_009379015_1_23_104	GCA_009379015_1_23_104	+	120399	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MRRFIKQYLTIWLDIIKDRSIFLTMVLSVVFYGFFYPFAYQAQRPADLPIVIVDEEQSPLTQAIIHTTSHTPNIHVLAVVSDFRQAQMLVQSAKADGILLLPNNLSQSIHHGQTGGVGLYLSSAYFLRTQNIGAGLVSSLQATIIQELGQVTQTRHKPMPELIHQSALFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGYRQRLWRASACDFLAIYAVALTIGCLSCFYLFGFVFWWHDYPRGGNFWGMMLGVPIFVSCAIGVALLIASWVADGAKVGVLLIFSSVPLFMLTGLAYPLMAMPKFLQPLAHALPTTQGVQMFIQLNQMGVSIQDVWQKMAYLASVAVLCLGVAFWRLRLVNRSV*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0029	persistent	direct	high	1100	0.999	GCA_009379015.1_01003
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	115961	116080	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	36000	36119	GCA_009379015_1_23_105	GCA_009379015_1_23_105	-	120399	.	PDB:2MXZ_A	L-alanyl-D-glutamate-peptidase-endolysin	MAQASGKLGVNVRWGGAWMVITGKAGTPQEWVKAYRAGG*	common_virus_hmm	common_virus	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0030	shell	ambiguous	low	30	0.25	GCA_009379015.1_01004
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	116050	116277	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	36089	36316	GCA_009379015_1_23_106	GCA_009379015_1_23_106	-	120399	.	.	hypothetical protein	MHKFSAFVVKAITPDEIRAAGEQFKSHPENNAPATADKLIANKSGFVLSERSLKNLQMIIAPLPKQWHRQAVSWA*	.	hypothetical_protein	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0031	shell	direct	high	227	0.996	GCA_009379015.1_01004
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	116277	116603	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	36316	36642	GCA_009379015_1_23_107	GCA_009379015_1_23_107	-	120399	.	PFAM:PF06805.11	tail-assembly-protein-I	MKTVILHGILAKKFGKTFKLSVNSTKEAMRALCVQLTGFEAFMMNAHKQGLRFAVFHDKHNVGENELDMNHTAKIIRVVPVVEGSKKEGVLETVIGAVLVVAGVVVTG*	hallmark_hmm	common_virus	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0032	shell	direct	high	326	0.997	GCA_009379015.1_01005
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	116703	116885	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	36742	36924	GCA_009379015_1_23_108	GCA_009379015_1_23_108	+	120399	.	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family [General function prediction only]. 	MNSRQMIKLITDDGWYEVAVRGSHHHYKHPTKQGKVTIPHPKSDLPIGTVKQILKQAGLK*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0033	shell	direct	high	182	0.995	GCA_009379015.1_01006
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	116918	117325	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	36957	37364	GCA_009379015_1_23_109	GCA_009379015_1_23_109	+	120399	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MLYPIAIEKPVSTNECYGVIVPDIVGCFSAGDTVDEAVKNAYEAIVLHLDMLADDGEDIPQATDIAHHQENPDYQGMIWAVVDIDLSAYMGKSEKINVTLPSRLIVKIDEKVKAHKSLYKSRSNYLAQLASRDLA*	mmseqs_cdd	nonviral_gene	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0034	shell	direct	high	407	0.998	GCA_009379015.1_01007
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	117317	118096	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	37356	38135	GCA_009379015_1_23_110	GCA_009379015_1_23_110	-	120399	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MRLTKTIKEAIHAHAKICYPAECCGLIIDGQYYPCDNVTPNPTEHFEIDPIDMFEMGEKGQIQAIVHSHPDGNAEPSEVDRVQMGIHGIDWVICAFGYHADGKEYFDVKCHKPKAYQAPLLGREYHHGVQDCYSLVQDYYSRELDITLPSFARSDDWWENPNHEPLYENNFTKAGFIKVQDKNDLQKHDVILCRVGRTHHVNHALIYVGDGKLKSETTPDCVGNALILHHPHGSLSVREIYGDNWQRRTAMVVRHQSLG*	mmseqs_cdd	common_virus	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0035	shell	direct	high	779	0.999	GCA_009379015.1_01008
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	118480	118683	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	38519	38722	GCA_009379015_1_23_111	GCA_009379015_1_23_111	+	120399	.	.	hypothetical protein	MADKASPQARKKATANYFDKSLARIGLVISHTEPHVLDALNQIMAHKDCSKAMAIKIALVEYARTLD*	.	hypothetical_protein	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0036	shell	direct	high	203	0.995	GCA_009379015.1_01010
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	118680	119348	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	38719	39387	GCA_009379015_1_23_112	GCA_009379015_1_23_112	-	120399	.	PFAM:PF05100.11	minor-tail-protein-	MSFNTDIQQTTVQGFITLYELDARKLVGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGRASTPKLSIGDKINGIQGAVSALCRLYDDFARAKLTVTHTLQAYLDSHDAQNYRQQEWYIEQKVSENPSLGIVEFELSNPVDFEGQKIPVRQITTYCNEAVCGRYRGEICGYTGTARFTHDGKPTDDPTLDRCSGLLAHCKLRDNEGSFCGFPAAGLI*	hallmark_hmm	common_virus	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0037	shell	direct	high	668	0.999	GCA_009379015.1_01011
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	119432	119821	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	39471	39860	GCA_009379015_1_23_113	GCA_009379015_1_23_113	-	120399	.	.	hypothetical protein	MSETTLTELSRTEAQVLQSFIAQVDFWKNQHGDKAATIEVIYYPEDDGFEVANGEPNNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTEFSLSYKNDRYGVRAALASEATDKADDGDDAKNTD*	.	hypothetical_protein	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0038	persistent	direct	high	389	0.997	GCA_009379015.1_01012
GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote	cenote	CDS	119925	120323	GCA_009379015.1	NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015.1_NXCZ01000003.1	GCA_009379015.1|NXCZ01000003.1	GCA_009379015_1_23	GCA_009379015_1_23@C7	39964	40362	GCA_009379015_1_23_114	GCA_009379015_1_23_114	-	120399	.	PFAM:PF05939.12	minor-tail-protein	MGDFITFLTYIESEKLNLREKTMKTFNWDISADSSETTDLNTTITAFGDGYEQAVSFGINNSRKSWQCSKIDTKAVIDEIYRFLIDTKGVEPFNFKPLTDEPSIKVRLDGEVSRQKTGGDVWQIGFTLKQVF*	hallmark_hmm	common_virus	C7	40438.0	79962	120400	GCA_009379015.1|NXCZ01000003.1@region_79963_120400@tool_cenote_CDS_0039	shell	direct	high	398	0.997	GCA_009379015.1_01013
GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote	cenote	CDS	95951	96919	GCA_009379015.1	NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015.1_NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015_1_27	GCA_009379015_1_27@C7	1	969	GCA_009379015_1_27_87	GCA_009379015_1_27_87	+	109221	.	7CI2_A	Cas12i2/RNA/DNA Complex	MHHTIARMQKFNKEFTNAKACYKKMQQAYLTSKNKFAFFPMQHASLLDMSTAIAYEQTRSDPFSEKGVNALKTLNQLYLFGTWRYTLGIYCLDDEIIKDSKAIPDDTPTSIFLNLPEWCVYLDIASAKIAITQDNKTRHIKGFWAVYDLIEYNSKPQKAINFIIDTDSDDDIYLPLTLILDDDMTVMQSLSYADNKIGDGGSNELIKVLLPYLLWLCVAEPEIMHKGEPVSRANLDKPKYQTNKKTGVFIPPSEPFIYEVGSRLGGEIRHYQEQIEQGKHRQTSKKRPHIRRGHWHGHWHGTGQAKEFKIKWQPAIFVNSGV*	hhsuite_tools	nonviral_gene	C7	13271.0	95951	109222	GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote_CDS_0001	shell	direct	high	968	0.999	GCA_009379015.1_01328
GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote	cenote	CDS	96921	97121	GCA_009379015.1	NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015.1_NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015_1_27	GCA_009379015_1_27@C7	971	1171	GCA_009379015_1_27_88	GCA_009379015_1_27_88	+	109221	.	.	hypothetical protein	MSKNKTPDYVLRANANYRKKHTTNKSLQLHNEKDADIIQALQNETKSFNALMKDILRNHYNLNQNQ*	.	hypothetical_protein	C7	13271.0	95951	109222	GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote_CDS_0002	shell	direct	high	200	0.995	GCA_009379015.1_01329
GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote	cenote	CDS	97228	97698	GCA_009379015.1	NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015.1_NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015_1_27	GCA_009379015_1_27@C7	1278	1748	GCA_009379015_1_27_89	GCA_009379015_1_27_89	+	109221	.	cd22580	Anti-CRISPR type I subtype F11 (AcrIF11). AcrIF11 (also known as AcrF11) is an anti-CRISPR (Acr) protein that was discovered via the guilt-by association (GBA) method, and subsequently confirmed by functional assays to inhibit the type I-F CRISPR-Cas system. GBA is based on the strong co-occurrence and clustering of acr and anti-CRISPR associated (aca) genes through proximity and homology searches. AcrIF11 is often associated with genes encoding DNA-binding motifs, named Aca4 through Aca7. AcrIF11 is found in over 50 species of diverse proteobacteria; given its widespread nature it was used to discover acr loci encoding acr genes inhibiting types I-C and V-A CRISPR systems, where Acr proteins had not yet been found. Structure determination revealed that AcrIF11 binds NAD. The type I-F Csy complex is a crRNA-guided surveillance complex composed of a crRNA and nine Cas proteins (one Cas8f, one Cas5f, one Cas6f, and six Cas7f), which recruits a nuclease-helicase protein Cas3 for target degradation. CRISPR-Cas immune systems are used by certain prokaryotes and archaea to resist the invasion of foreign nucleic acids such as phages or plasmids. Anti-CRISPRs are small proteins which are the natural inhibitors for CRISPR-Cas systems; encoded on bacterial and archaeal viruses, they allow the virus to evade host CRISPR-Cas systems. The CRISPR-Cas-mediated adaptive immune response can be divided into three steps, including the acquisition of spacer derived from invading nucleic acids, crRNA processing, and target degradation. Theoretically, Acr proteins could suppress any step to disrupt the CRISPR-Cas system. Acr proteins are diverse with no common sequence or structural motif, and they inhibit a wide range of CRISPR-Cas systems with various inhibition mechanisms. CRISPR-Cas systems are divided into two classes (1 and 2) and six types (class 1: types I, III and IV; class 2: types II, V and VI). Class 1 systems utilize RNA-guided complexes consisting of multiple Cas proteins as the effector proteins to recognize and cleave target DNA. Type I CRISPR-Cas systems are the most widespread in nature, and the Cas protein composition of the employed CRISPR ribonucleoprotein (crRNP) complexes differs between seven subtypes (A to F, U). Acr families are named for their type and subtype which are numbered sequentially as they are discovered.	MTTLYHGSHENTAPVIKIGFAAFLPADNVFDGIFANGDKNVARSHGDFIYAYEVDSIATNDDLDCDEAIQIIAKELYIDEETAAPIAEAVAYEESLAEFEEHIMPRSCGDCADFGWEMQRLRGVIARKLGFDAVECVDEHGVSHLIVNANIRGSIA*	mmseqs_cdd	nonviral_gene	C7	13271.0	95951	109222	GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote_CDS_0003	shell	direct	high	470	0.998	GCA_009379015.1_01330
GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote	cenote	CDS	97718	98263	GCA_009379015.1	NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015.1_NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015_1_27	GCA_009379015_1_27@C7	1768	2313	GCA_009379015_1_27_90	GCA_009379015_1_27_90	-	109221	.	PFAM:PF08291.10	Peptidase-M15	MTSIKHIQTQIGTAADGIWGDKSKQALKSAINDGKIITITKNISLNELLASNTAKRHNIDNMPNQAILQNLIDASVNLYQPVREILGVAIIISSGYRCPALNKAVGGSATSAHMSGFAIDFTAPKFGTPKLIVPHIVKILKQKGIGFDQAIIEYPKSPRSWVHLGYKHPSGRQRGSSFVIG*	common_virus_hmm	common_virus	C7	13271.0	95951	109222	GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote_CDS_0004	shell	direct	high	545	0.998	GCA_009379015.1_01331
GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote	cenote	CDS	98288	98614	GCA_009379015.1	NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015.1_NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015_1_27	GCA_009379015_1_27@C7	2338	2664	GCA_009379015_1_27_91	GCA_009379015_1_27_91	-	109221	.	.	hypothetical protein	MSNLLIINALICAIGFFVGVHTFIKHLKAFSTEKTPVVEAWLVAVGMLAWSVLLYASFDEPIITRLEVFSRLLFLIYWVGGILKVQKQCIKIRRHLSKRKTKTNHYKP*	.	hypothetical_protein	C7	13271.0	95951	109222	GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote_CDS_0005	shell	direct	high	326	0.997	GCA_009379015.1_01332
GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote	cenote	CDS	98607	98981	GCA_009379015.1	NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015.1_NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015_1_27	GCA_009379015_1_27@C7	2657	3031	GCA_009379015_1_27_92	GCA_009379015_1_27_92	-	109221	.	.	hypothetical protein	MIDLQGLHAPFLISWFGVWLFAFLGGWASAFIKINEIDNRLQFPFIAKPLIGTVAGVAMAMIINGQAEPPAVSLAFWSFVGSICSTPIITGFLVFISDQKRQNELYKSAQNKFIPWSNKEKKHE*	.	hypothetical_protein	C7	13271.0	95951	109222	GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote_CDS_0006	shell	direct	high	374	0.997	GCA_009379015.1_01333
GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote	cenote	CDS	98989	105552	GCA_009379015.1	NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015.1_NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015_1_27	GCA_009379015_1_27@C7	3039	9602	GCA_009379015_1_27_93	GCA_009379015_1_27_93	-	109221	.	PFAM:PF13550.5	tail-protein	MNIYGAKRQKQSSNKPYIQKDTASSTNSYQALYGLSEGEIYGLVDGGKSIRLDGTPIINDNGEPNFPDVSWDFRAGSIDQEHIKGFSSVENEQSVNVELRHDRPYTKAINNKQLSAVAIRLGFNSLREQKGNGDVVGYRIEYAIDVQTDGGAWEMVLNTAVDDKVSQGYQRSHRIDLPKAQQGWSVRVRRLTPNRDSEMVSDTMVVSAVTEIIDAKLRYPCTALLALKYDAQTFSNIAKVAVHVRGMLIQVPTNYDPTARTYDGLWDGTFKLAYTNNPAWVFYDICTAKRYGLGDRLAGKVDKWSLYRLAQYCDEMVDDGKGGKEPRFTVNVYLQKADDAYRVLQNLASVFRALSFWDGTSIVVDADTPKEPVYVFSNANVIGGEFSYTGTRARDRHTIVKCAYDDPDNNFETDYIYVQDEHAIAKYGINQLELNLFGCTSKGQAQRAGIWALKSEQLETETVSFSTGLDGFIPKVGEIIHVQDNSRAGRMQAGRIVATDGRQITLDRMAGKVGDTLMVGDNSAQIVQIDDTVITTDTAIGRAGQVFAISSSDVAPRAYRVMTISQNDDASFSFTALQYEIGKFTATNNIAAIPKKEVSVIKAHVLTPPNSVSITERTRTHQGQAITTLVISWEQVVGAVAYIVEYKKDSNAWQTHKVSSHSLEIDGVYAGAYQAKVRAIDAFDNESLSQSSQLTAIQGKQGKPPRPINLSVQGVLFGMNLGWNFAKGSGDTNFTEIEVSPDGRTHITTLGTFAYPTNKHEITGLQGNLTQFYRARIVDKLGNTSDWTDWVSGTTSADADKVLDMLSGQISQSHLDQSLRTPIGKIGTIESNINSFNSKIPSINKIPTLESAINSVNSKIPTIESNINSFNSKIPSINKIPTLESAVNSVNGNLSTLNSQLATAQNELSTAKSTLQTAVGNITTERNRITAAIFDINALQADKNAKTQEIANLTQTVGSHTSSIRELGVATGDLSQKYGQIKTQADNTNSEITAIKQTQSGQATSVERLGARFDNLSAGGRNLIINSGVVVQNDSYPIRSYPLAPNHGLADGDDVVITIWGQLADSKTAFYAYNSGGWVKLGRFSKISDGVYVLKTPWAVSLGVNTASNTALNIYPFPQSQTGESRIDKIKLERGNIATDWTAAPEDLQEQLTAQLANKASTASVNTLNQTLANKERALTEQINTAKSELANKASSADLQSVQRTLTSKERSLSQRINTLQSDYNGNKASVQSSINTLTTTNQSLSERINTVESSVSGNTSSINTLNQSLTDKERALTRKQEQLTAQLANKASSADLQSVQQTLTTKEQALTEQINTAKSELGGRITQISDETRTLSDANRTIGERINRLDSEIYSPNLLQNGDTPKTASTWNIDFPITESLQAGRRVYISLSGASGLTSVAVYNSSPAGAAKVGDLTNDDGVWRGEFDWVSYGNNNVLQFYREPRSSTQTVTASLTTSNGSKIANLERTVTTNNQSLSERINTVESSVSGNTSSINTLNQSLTTTNRALTTKQEQLTAQLANKASTSSVNSLSDSLATKERALSRRIGTVESSVSGNTSSINTLNQSLTTTNRALTTKQEQLTAQLANKASTASVNSLTESLASKERALSRRIGTVESSVSGNTSSINTLNQSLTTTNRALTTKQEQLTAQLANKASTASVNSLTESLASKERALTEQINRAKSEMGGRITQISNETRTLTDANRTIGERINQLNSELAGADSISDNLLINSNRTLVTGAYLIATYRISETLKNGDKVRLTVNAPQLGSRRIGFMAYNSNSASGSKLSDIRNRQGNSYTAEFEWNVGTGANNELWLYHNAENTRSVSTITSVSLQKITTGSGLASIKSSVANLERTLTTTNQSLAERINTVQTTLNGQTASIQQHAQSLNGLSAQWTLKVQSGGVVSGIGLASNNGVSDFAVRADKFYVASPQGNKKPMFSVITRPTTLNGTTVPTGVYLNGDLLASGTISGDKIRANTQITAPNIRGGSINIGSNFSVDSQGNLNANSGVFRGQVFADKITGQIDVESLKSSAVALGYDMFISNSYHASSPSGFDKTFKASYPSHGSIIQSLGFNNENIGSAMYEMRVFCKRAITVKQKLHTVDDNLYCYVNGDSAFGYHSNYDYYDNEERVPTPFGRGRINTEISLSLRQGLNTIQFVLNNSGGGICQLIVLGDFIDNNIIKFA*	hallmark_hmm	common_virus	C7	13271.0	95951	109222	GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote_CDS_0007	cloud	direct	high	6563	1.0	GCA_009379015.1_01334
GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote	cenote	CDS	105561	106154	GCA_009379015.1	NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015.1_NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015_1_27	GCA_009379015_1_27@C7	9611	10204	GCA_009379015_1_27_94	GCA_009379015_1_27_94	-	109221	.	PFAM:PF06805.11	tail-assembly-protein-I	MKTVILHGILAKKFGKSFDLDVKTAKEACHALACQIPAFYEFMMNAEKQGIKFAIFNGEKRTQKTNIGEKQLDDITTASHIHIMPRVAGSGGKTMGWIQVVAGWVLVGVGVVTGNAGLIAAGAGLMLGGVSSLLMPTPNLDPNNEDGNRPNNGFGGAVTTVAQGNPVPILYGEREIGGFIVSAAIYAEDKMVQGVKI*	hallmark_hmm	common_virus	C7	13271.0	95951	109222	GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote_CDS_0008	shell	direct	high	593	0.998	GCA_009379015.1_01335
GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote	cenote	CDS	106220	107035	GCA_009379015.1	NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015.1_NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015_1_27	GCA_009379015_1_27@C7	10270	11085	GCA_009379015_1_27_95	GCA_009379015_1_27_95	-	109221	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MGGFLLEKFMRLTKTIKEAIHAHAKSAYPNECCGLIIDGQYYPCDNAAPNPTEHFEIDYLDMVEMQEYHGEIQAIVHSHPNGNAEPSEVDRVQMSIHGLDWVICAFGYHAGGKEYFDVKCHKPKAYQALLLGREYHHGVQDCYSLVRDYYSRELDIHLPDFHRTDGWWEKEHHLPLYENNFTKAGFIKMQDKNDLQKHDVILCRVGRTHHVNHALIYVGDGKLKSETTPDCVGNALILHHPHGSLSVREIYGDNWQRRTAMVVRHERLNNG*	mmseqs_cdd	common_virus	C7	13271.0	95951	109222	GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote_CDS_0009	shell	direct	high	815	0.999	GCA_009379015.1_01336
GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote	cenote	CDS	107066	107476	GCA_009379015.1	NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015.1_NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015_1_27	GCA_009379015_1_27@C7	11116	11526	GCA_009379015_1_27_96	GCA_009379015_1_27_96	-	109221	.	PFAM:PF11008.7	lipoprotein	MKSIIALTLLFVLTACSTKPIVNYTETVSLVDNNVTSDRSTIVVRRDMGFMGSGCPVEIYLNGVKYARLQSSQSINIHTTAGTHILSAKFTGRGFCQDRLNETEVTIQKNESKYYRLAMNANGDFHIFPTLSTPIQ*	phrogs_hmm	hypothetical_protein	C7	13271.0	95951	109222	GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote_CDS_0010	shell	direct	high	410	0.998	GCA_009379015.1_01337
GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote	cenote	CDS	107537	108205	GCA_009379015.1	NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015.1_NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015_1_27	GCA_009379015_1_27@C7	11587	12255	GCA_009379015_1_27_97	GCA_009379015_1_27_97	-	109221	.	PFAM:PF05100.11	minor-tail-protein-	MSFNTDIQQTTVQGFITLYELDARKLGGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGRASTPKLSIGDKINGIQGAVSALCRLYDDFARAKLTVTHTLQAYLDSHDAQNYRQQEWYIEQKVSENPSLGIVEFELSNPVDFEGQKIPVRQITTYCNEAVCGRYRGEVCGYTGTARFTHDGKPTDDPTLDRCSGLLAHCKLRDNEGSFCGFPAAGLV*	hallmark_hmm	common_virus	C7	13271.0	95951	109222	GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote_CDS_0011	shell	direct	high	668	0.999	GCA_009379015.1_01338
GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote	cenote	CDS	108289	108678	GCA_009379015.1	NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015.1_NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015_1_27	GCA_009379015_1_27@C7	12339	12728	GCA_009379015_1_27_98	GCA_009379015_1_27_98	-	109221	.	.	hypothetical protein	MSETTLTELSRTEAMVLQSFIAQVDFWKNQHGDKAATIEVIYYPEDDGFEVANGEPNNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTEFSLSYKNDRYGVRAALASETTDKADDGDDAKNTD*	.	hypothetical_protein	C7	13271.0	95951	109222	GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote_CDS_0012	persistent	direct	high	389	0.997	GCA_009379015.1_01339
GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote	cenote	CDS	108782	109114	GCA_009379015.1	NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015.1_NXCZ01000006.1	GCA_009379015.1|NXCZ01000006.1	GCA_009379015_1_27	GCA_009379015_1_27@C7	12832	13164	GCA_009379015_1_27_99	GCA_009379015_1_27_99	-	109221	.	PFAM:PF05939.12	minor-tail-protein	MKTFTWDISADSSETTALNTTITAFGDGYEQAVSFGINNSRKSWQCSKTDTKAVIDEILSFLLNTKGVEPFTFAPIKGEPAIKVRLDGEISRQKTGGDVWQIGFTLKQVF*	hallmark_hmm	common_virus	C7	13271.0	95951	109222	GCA_009379015.1|NXCZ01000006.1@region_95952_109222@tool_cenote_CDS_0013	shell	direct	high	332	0.997	GCA_009379015.1_01340
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	36360	36500	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	1	141	GCA_009379015_1_5_35	GCA_009379015_1_5_35	+	60987	.	.	hypothetical protein	MNQPKRQNIEMNILSKGTEKPITTEMITAVLKKLAKGHCESLALTA*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0001	persistent	direct	high	140	0.993	GCA_009379015.1_00389
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	37660	37962	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	1301	1603	GCA_009379015_1_5_36	GCA_009379015_1_5_36	-	60987	.	.	hypothetical protein	MIPFKPNQLRQKLQHPNPFAKPSLADLASFLRHLAFGLWKIWAVLALVHRPFGSAAYPVILVLPNHLSIRFSTLSCHLDTVIKSHAKHNNLLVICSKAKQ*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0002	.	unmatched_CDS	none	0	0	.
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	38068	38391	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	1709	2032	GCA_009379015_1_5_37	GCA_009379015_1_5_37	+	60987	.	COG0607	Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]. 	MITELKITEFTPTKDKVIWDVRDAEQYQEGHIEHAVNHPLSTIDKTLLDATKGDIYVLCGGGTKAQKAAKLINELDNDRRIIHLTGGTRGAIASGMAIISEQPLERN*	mmseqs_cdd	nonviral_gene	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0003	persistent	direct	high	323	0.997	GCA_009379015.1_00392
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	39010	40182	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	2651	3823	GCA_009379015_1_5_38	GCA_009379015_1_5_38	+	60987	.	PDB:1Z19_B	Integrase	MARTTKPLTNTQIDKAKAKEKVYRLYDGNGLVMNITPNGGKYWYLQYKHPTTGKAQMHKLGNYPALGLADAREKSAFYHSLLAKNIDPKQHDLQQNAQNDLLTVYQSWAKTKDYTEKHHAKNNNYVRDTIAIIGNKSIADISVPDLVRVLKPVESIGQYEKLKKWRSLLNQIFAYAVASGHIEHNPALNLRGAFGTGEVRHNPAILDEKRLAELVRAIDEYHGSIVTRQALRYALLTFARPGEVRHLKWQDIHDDFWHYQPSKTRKKTGVEMITPLSSQALQIIHARQAIKCSDFVFPSVTGNTRPLSENTLNQALRRMGFDSSEQTTHGFRAIARTLLEEKFKYDYRMIEMQLGHLVRDSNGRAYNRVTWLDERKEMMQKWADYLDSIK*	common_virus_hmm	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0004	shell	direct	high	1172	0.999	GCA_009379015.1_00396
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	40207	40386	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	3848	4027	GCA_009379015_1_5_39	GCA_009379015_1_5_39	-	60987	.	pfam05930	Prophage CP4-57 regulatory protein (AlpA). This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant, overproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins.	MNMSSLKRLRLPQVIEKTGWQRATIYKKIKEGEFIPPKKDGRISYWLEQDIDNWILTRA*	mmseqs_cdd	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0005	shell	direct	high	179	0.994	GCA_009379015.1_00397
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	40387	40563	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	4028	4204	GCA_009379015_1_5_40	GCA_009379015_1_5_40	-	60987	.	.	hypothetical protein	MRFNISNFTSALLYSLLGALVMLTISALSVYLVGTTIIATISFIICFGFAITAGFLED*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0006	shell	direct	high	176	0.994	GCA_009379015.1_00398
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	40569	41066	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	4210	4707	GCA_009379015_1_5_41	GCA_009379015_1_5_41	-	60987	.	.	hypothetical protein	MNNQLFKAGDKIYHPLVSRDIRVLTKPAGKSEKLLVAKEDKDNIFIFEESGCEYRELHRYSSIFHATEENCELLSKLYGEEFEKPKSNPTPDTIVKKMLDDGYAYVICSILLPRGVVKDIIRGYGGGVFLGEYDNYYRDEIIPLDAYTGKVIVDYKDGKPVLGDE*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0007	shell	direct	high	497	0.998	GCA_009379015.1_00399
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	41120	41389	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	4761	5030	GCA_009379015_1_5_42	GCA_009379015_1_5_42	-	60987	.	.	hypothetical protein	MNTEEERPFLKVEVSLDDIASKDWFTEAVENGISMLLCSNEPTLREYVLERRVLPNFTKIRTLVPAYYDQMRLIMKFNGSDLGFELPEE*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0008	cloud	direct	high	269	0.996	GCA_009379015.1_00400
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	41602	41811	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	5243	5452	GCA_009379015_1_5_43	GCA_009379015_1_5_43	-	60987	.	.	hypothetical protein	MVSIVFDLVADDGTHHKIDYSVDKPLTRYELANLAHSLGLNDLRDGQTDGINYNVKKSYITTILTEQNR*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0009	cloud	direct	high	209	0.995	GCA_009379015.1_00401
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	41757	41972	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	5398	5613	GCA_009379015_1_5_44	GCA_009379015_1_5_44	-	60987	.	.	hypothetical protein	MKAKRKPYQPKISGSMSFPLEYDSDTVAKFLATAKYTGLLSYAKGLKIIDLKPRWYPLYLIWWRMMAHITR*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0010	cloud	direct	high	215	0.995	GCA_009379015.1_00402
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	41994	42215	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	5635	5856	GCA_009379015_1_5_45	GCA_009379015_1_5_45	-	60987	.	.	hypothetical protein	MKIKALRWKKFDWGYYAMGVNQNYIIRAENKHYRLTIMPHDYGRPILQDAKTVEECKKIAHIQHEESVLRWFE*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0011	cloud	direct	high	221	0.995	GCA_009379015.1_00403
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	42224	42928	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	5865	6569	GCA_009379015_1_5_46	GCA_009379015_1_5_46	-	60987	.	PFAM:PF05037.12	single-strand-DNA-binding-protein	MNYFIACNDADAAKFGASNFIDGDTAQVVKITQAYYTQNDKGTQTLHLSLISSEKQTGDVAIHFANGQGERLIGYNLINAILKVTGTAGITQAQGTYSAYDFNAGGTVNKQGMVAPELVGKFFGAIFSKNYRINDKGEEKYSINLFGVYHAQTQQWAKQMINGEQALPGQIDQMLERAKAESEKSRANPYGKRQTQQVSNQQNSQVRQHPQSHVQPYSPPVQYGKNVSDDDMPF*	phrogs_hmm	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0012	shell	direct	high	704	0.999	GCA_009379015.1_00404
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	42925	43554	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	6566	7195	GCA_009379015_1_5_47	GCA_009379015_1_5_47	-	60987	.	CDD:cd01120	RecA-like_NTPase-recombinase	MAIGAFILGQSGTGKSFSLRNLNPDNVGFINVVGKYLPFRGAEFKQVVTDDPNLICDILMKSKAPIIIIDDFQYLMSNKYMRDSEVKGYDKYTENGKNIWQILNTVNYHMKPYQRVYILSHTDEVDGKTKLKTIGKLLDEKITPEGMVGIVLQTHIESGKNYFTTKNNGFTTVKAPFEMFDNDLITNDLEMVDNAICNYYNLPKNGENS*	common_virus_hmm	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0013	shell	direct	high	629	0.998	GCA_009379015.1_00405
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	43654	44151	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	7295	7792	GCA_009379015_1_5_48	GCA_009379015_1_5_48	-	60987	.	PFAM:PF05565.10	resistance-protein	MNLYQISKEAEESLIRLGEMLENGETPSDEEVNDLLDLRGDLHDKLLNYGKFIKNNSSDIDALDGEIRRLSAKKRALNNLNECLKSNMLAAMQANDIKKVDDPIIPIRRQKSIPSVCLDINADRLPKEFQKMEIKANNAAIAKALKDGIVIDGANLVQNEHIRIG*	common_virus_hmm	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0014	cloud	direct	high	497	0.998	GCA_009379015.1_00406
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	44120	44287	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	7761	7928	GCA_009379015_1_5_49	GCA_009379015_1_5_49	-	60987	.	.	hypothetical protein	MNDRDFMDFIELQFSEEELAQFDDEQQYYDLLAHEFGLPFESEAKNESIPNQQRS*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0015	cloud	direct	high	167	0.994	GCA_009379015.1_00407
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	44284	44556	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	7925	8197	GCA_009379015_1_5_50	GCA_009379015_1_5_50	-	60987	.	.	hypothetical protein	MAVYRRQVIKMQKATATIRLGKSEQVVTGRISYQDGQYHSVILSVSVCLGGHEIELDLQAHDDWQIAEVLAIQAGLFEPIALSENIKGAA*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0016	shell	direct	moderate	243	0.89	GCA_009379015.1_00408
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	44619	44909	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	8260	8550	GCA_009379015_1_5_51	GCA_009379015_1_5_51	-	60987	.	.	hypothetical protein	MSKLRKRYINRGIVNFTVVYSIGRDATKIIHAIFMYLECGNPPREVCCNRKEIREYCTKLLNLQDFVFFQDFCPHLFKEFEQDKGAIFITGEQHDN*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0017	shell	direct	high	290	0.997	GCA_009379015.1_00409
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	44906	45067	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	8547	8708	GCA_009379015_1_5_52	GCA_009379015_1_5_52	-	60987	.	.	hypothetical protein	MRSTIQTVIFIVIMMFMLKGCLYAFDHECKIQEELGRQYYEESIHLQRENPNP*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0018	shell	direct	high	161	0.994	GCA_009379015.1_00410
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	45441	45593	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	9082	9234	GCA_009379015_1_5_53	GCA_009379015_1_5_53	+	60987	.	.	hypothetical protein	MGGEEELVKWTAYWYSMWSHQRETKIWKGFFKIPFSTQDDQKALNYLEGK*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0019	cloud	direct	high	152	0.993	GCA_009379015.1_00411
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	45595	46137	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	9236	9778	GCA_009379015_1_5_54	GCA_009379015_1_5_54	+	60987	.	.	hypothetical protein	MHELDYKHLLAERNSLEQMISNAKNPNSISVKSLQTRLNHVIEQIDRIDPMHLIQKAVITFRGKPVNGSKSISADFSAKALESLTDMVTSIAASATNTLSYHGAIPNKSQHNLQITGTAVGSFGFELSLPSPQDDLIDGSKNDTAYTLNHIQQLLQYGISGTDEQVSELIKIQPTVEYDS*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0020	cloud	direct	high	542	0.998	GCA_009379015.1_00412
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	46364	46894	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	10005	10535	GCA_009379015_1_5_55	GCA_009379015_1_5_55	-	60987	.	.	hypothetical protein	MLKQRIEKTYQKFPYRADFENGRTNIGGIDLTKEPERIDEIVELSNLPKAKEAIYQLNVQNTAFMTLGCAFGELSTFIGGYIEICLRPEIDNSLIDIMRLDELFFQHLAKNYNQRMVDYMERALMSWEVHFATVDQSDSLPIVAIFVGAQSYQDLDLTVELLIQRLHQDFLYLTMS*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0021	cloud	direct	high	530	0.998	GCA_009379015.1_00413
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	46940	47644	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	10581	11285	GCA_009379015_1_5_56	GCA_009379015_1_5_56	-	60987	.	PDB:2FJR_A	Repressor-protein-CI	MQKTAIERIIEVTGKTPAEIAKAINASPQSVNNWQKRGISKKGAQDIAKAYNLSLDWIITGEGSIHPLQSNISPNFESVDDWGNDTPLEPDEVEIPFYKDFSVACGHGTDLVVMENEKRRLRFSRLTLDRIGSHKDKVFATLAEGDSMSPTINDKDTIWIDESKTSIKDGKIFVFEYGGLCMCKRLYRLPNNGLKIVSDNTIDYPEWEITGEQKETNGFRLIGWVFHWSVMDSW*	common_virus_hmm	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0022	cloud	direct	high	704	0.999	GCA_009379015.1_00414
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	47792	47995	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	11433	11636	GCA_009379015_1_5_57	GCA_009379015_1_5_57	+	60987	.	PFAM:PF10078.8	DNA-binding-protein	MTDKELIQRLGGAKVLGDYLSLKNPHQTVWNWGSRGIPAKVKLDYPELFQTDNPPNLNMVKKKNDQN*	phrogs_hmm	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0023	cloud	direct	high	203	0.995	GCA_009379015.1_00415
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	48155	48589	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	11796	12230	GCA_009379015_1_5_58	GCA_009379015_1_5_58	+	60987	.	.	hypothetical protein	MNSIILTDTNDESNAFSKRRTDFDAQEREIAEFIKKGGKVINLDNTKRPKKKSVKSHHANFNNSGIKSEMHLVLCYLKRSGKRMTGLQIQEKFGISATTLGVQTRLLNAQAGKTLIENEKIRDENNRLKRVYWATRQGMKQDEF*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0024	cloud	direct	high	434	0.998	GCA_009379015.1_00416
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	48579	49631	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	12220	13272	GCA_009379015_1_5_59	GCA_009379015_1_5_59	+	60987	.	PDB:2RU8_A	Primosomal-protein-1	MSFKAVAWAAEQTKTTTSSQTLLLMILANFANEDFRAYPSLETLSKLTRLDKRTVRKCLIELQELGLIFDTGDKYKKQICVYYLNLLDDKVGDNGANLTVKGGTILHERGCKNDTPNKNDTPNNFVSKGGTILHKGGTILHERGCKNDTQSYYKPINKPINNPVSINTHAHESENSDHLNNSEQQSEMVKKLSSSANDFGEKTHTPAKKSKTKHSEQKPVDVKAYLAELGVSKQACDDFIDFRKQARRPLTITAVNRLVNEANKAGLTVEQAIEYALFKGWHSFTANYYHNSEQLNQGQNYARQSYQHNHQQSETEQYAQSLQQQFDAKYNQPQAGRVVDADFLDLEKPF*	rep_hall_hmm	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0025	cloud	direct	high	1052	0.999	GCA_009379015.1_00417
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	49597	50133	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	13238	13774	GCA_009379015_1_5_60	GCA_009379015_1_5_60	+	60987	.	PF06992.11	Replication protein P	MQTFLIWKSHFKSKLKSGDWNLQTAEIWSIALADMGWSEVAHTAAERKSLQLEWPPSSAKEFHKLAIFVLFDDVYRAHRQAIQGVFKSGVAYETTKRLGGHYELVRMDEKTSFSRWQIVYTQVCGEAIKGAVFTQPISRQIEQKQETQNIISAEMQNKINRFLTTFGKKKHGQQGVKV*	hhsuite_tools	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0026	cloud	direct	high	536	0.998	GCA_009379015.1_00418
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	50144	50491	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	13785	14132	GCA_009379015_1_5_61	GCA_009379015_1_5_61	+	60987	.	PFAM:PF06356.10	Endonuclease	MSMKYKNKKVKIDDITFDSKKEANRYLVLKQMQNSGLISDLTLQKPFILVSGTRIAGEPRKRPSVRYIADFVYFDNRVGKTVVEDVKSAITKKDKVYRLKKHLMKTVHNIDILEI*	common_virus_hmm	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0027	shell	direct	moderate	341	0.98	GCA_009379015.1_00419
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	50492	51157	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	14133	14798	GCA_009379015_1_5_62	GCA_009379015_1_5_62	+	60987	.	TIGR02170	thymidylate synthase, flavin-dependent. Two forms of microbial thymidylate synthase are known: ThyA (2.1.1.45) and ThyX (2.1.1.148). This model describes ThyX, a homotetrameric flavoprotein. Both enzymes convert dUMP to dTMP. Under oxygen-limiting conditions, thyX can complement a thyA mutation. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]	MSMTYKQAPIAVIYKDHMGDDNSVVNAARVSFAKDASNFTPEQNKNLIKYLAKHNHWTPFAHAFVTLHMKAPIAIHAQCVKHQIGFAMNTVSRRYVSEAPDYYLPIFRSKPIGSVKQGSGDEIKGSMQTNVQTVYSYYMQASIDLYKQLIDEGVTPEQARFVLPQGVMTEWVWSGSLMAWARFYNQRIDHHAQKEIQELAKQVDKIIEPLFPVAWEALTTD*	mmseqs_cdd	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0028	cloud	direct	high	665	0.998	GCA_009379015.1_00420
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	51509	52000	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	15150	15641	GCA_009379015_1_5_63	GCA_009379015_1_5_63	+	60987	.	PFAM:PF05772.11	NinB/-Orf-homologous-recombination-mediator	MMKQVFRIISESVMKHCFTEIVKQYESGQVCSVVITDKNETRTNAQNRLYWLWLKQIKDKTGQDDDDLHVMFKRLFLAKIYARDDGEMAQLFESLNTLKRQPNYEQQVALPFAKRFLTTTQATTAQFSEYLNEIEVWAFKNGIALSVPDDLKWIKDDEKISIS*	phrogs_hmm	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0029	shell	direct	high	488	0.992	GCA_009379015.1_00421
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	52010	52189	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	15651	15830	GCA_009379015_1_5_64	GCA_009379015_1_5_64	+	60987	.	.	hypothetical protein	MTTYYNEQNNQLAKVNSSKADKDGNIWVEIDGKAPVPMNYDDFIKNFRSMSNEFSRKAR*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0030	shell	direct	high	179	0.994	GCA_009379015.1_00422
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	52164	52544	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	15805	16185	GCA_009379015_1_5_65	GCA_009379015_1_5_65	+	60987	.	.	hypothetical protein	MSSQEKHDDIKIGSKWSRQPDHPVVTVCDVKNGKVYFFGNGTNLTYRIDIQDFRDSFKKITPKISKYDRFSVLFVSLFAILMVVTLSIYLLFALSHYVGDDGKIILMAIFFFVFVSSAIEVFRNDS*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0031	cloud	direct	high	380	0.997	GCA_009379015.1_00423
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	52534	53133	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	16175	16774	GCA_009379015_1_5_66	GCA_009379015_1_5_66	+	60987	.	PFAM:PF11753.7	nucelotide-kinase	MTHNTGYELIYRLPSVGHGGKLILAAKKAPNKEPRQPKVGDIWVCQEGAVLVFGISDIGVEYLWQDTPDEFVVDSRSVEDWHKNFDYKENIFDCEDIKDDDPKLYKKIKEMQQMIESLSLKKKEANQDEVNHPSHYTSDPSGIECIQISENWSFCLGNALKYLWRNGKKDADTDIQDLEKAIWYIQREIERKKRVKGGA*	common_virus_hmm	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0032	cloud	direct	high	599	0.998	GCA_009379015.1_00424
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	53133	53525	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	16774	17166	GCA_009379015_1_5_67	GCA_009379015_1_5_67	+	60987	.	PFAM:PF06530.11	anti-termination-protein-Q-like	MSNEKLEAYKKEFVEWGRWVRCDPDRLSYPSPWFEMIMRDNIPCSSVSPNITDDRAMAIDKAVSRLSRYSVLQYQIFVLYFAKNISEYKIAKMADMRVFSNGRIKNARNIIKENLSGAMGYVIAFLENNA*	phrogs_hmm	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0033	shell	direct	high	392	0.997	GCA_009379015.1_00425
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	53667	54533	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	17308	18174	GCA_009379015_1_5_68	GCA_009379015_1_5_68	+	60987	.	PDB:3ME5_A	Cytosine-specific-methyltransferase	MNAQGKTVQKPKPPTIGSLFAGIGGFDVGFEKAGFHTSWQVEINPVCRAVLSDRFPHAKQFADVKTCLPELLSLPNGGQVDVIAGGFPCQDVSVAGKRAGLKGKRTSLFFNAMDIVDTLKPTYLVLENVAGLISSNDGKDLQTVIETLAQCGYVGFWRVLDSRYFGVPQKRRRVFLVAGLGKYPPFSLMADLGSVERISGKTESQSCWADAHHTLLAGVGSSAININCADIIAVPNGRGQMAVRERTTVDDGLCKGLDETNATEARAAGNAVCPPVAQWIASHLIKAI*	common_virus_hmm	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0034	shell	direct	high	866	0.999	GCA_009379015.1_00426
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	54562	54735	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	18203	18376	GCA_009379015_1_5_69	GCA_009379015_1_5_69	+	60987	.	.	hypothetical protein	MAQTKTDKSALDKAPAKNGFKYKPKFGLVIVCDDEPHQQTVFNHLKELGYKTKVVVV*	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0035	cloud	direct	high	173	0.994	GCA_009379015.1_00427
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	54732	55871	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	18373	19512	GCA_009379015_1_5_70	GCA_009379015_1_5_70	+	60987	.	COG2401	ABC-type ATPase fused to a predicted acetyltransferase domain  [General function prediction only]. 	MNINIHHTCTDFDSYRAERIKSLFNVETGADVQITAELPIEFEHWQENGNWQLGVVVGGSGTGKTSIGKKIWQGVGIYNPTWQADKPIIDQIAVNDSVDKATACLSAVGLGTVPAWLRPYQVLSNGEQFRANLAKALADEPNRLIIDEFSSVVDRQIACIGAGAFAKAWKRTQGKQAILLTCHYDVLDWLEPDWVYNTDTGEFYVNRGSLRQNKRHKRPKISFEIYQTNWRFWELFEPHHYLKMPKMIAATNYIAVVDGKPVAHLAVSTRPGLIEARACRLVVMPEWQGAGIGMRFLNAVCEMWLQGNNRYNKPMRTIFHTSHPNLAQALRRDKKWTQISGALYSKSSNKCKDGKLLGRYGGHFRAVQGFRYLGDNFNE*	mmseqs_cdd	nonviral_gene	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0036	shell	direct	high	1139	0.999	GCA_009379015.1_00428
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	55810	56391	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	19451	20032	GCA_009379015_1_5_71	GCA_009379015_1_5_71	+	60987	.	cd08822	Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalytic core domain found in a group of proteins with unknown functions.  Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group.  This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.	MAVILERCRALGIWGIILMNKLKVMVVGQKWLAERLLAWCLNKPNIKVVAVSPPNETDKLAALATTHKIPITPHGKTLTADQVPNGVDIILTAHAYCFVEKQARDKARLGAVGYHPSLLPKYKGKTAVKDAFENGDKVVGGSLYQLDDGWDTGQVLAQRSISVDDNDTLTTLWQEKLAPIGVDLFREYLTRLF*	mmseqs_cdd	nonviral_gene	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0037	cloud	direct	moderate	527	0.905	GCA_009379015.1_00429
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	56428	56847	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	20069	20488	GCA_009379015_1_5_72	GCA_009379015_1_5_72	+	60987	.	PDB:4DZP_B	Small-Terminase	MTAKKPKMGRPTIYNEDLVAEFLYRVAKGRSVASVCSDDDMPHRATIYEWLAHNSDFSDRYARASEQRADQYFDEMLHIADNALPEEVQKAKLQIDTRKWVLARMNPKKYSGKSQDDNTDNAISLMAKFMKELGEDKGD*	hallmark_hmm	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0038	cloud	direct	high	419	0.998	GCA_009379015.1_00430
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	56847	58319	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	20488	21960	GCA_009379015_1_5_73	GCA_009379015_1_5_73	+	60987	.	PDB:2O0J_A	Large-Terminase	MFYKLADPLYRLNNLYYITDKTGKKVKFKMTAEQYNYFKHEHSRNIILKARQLGFTTQVCIMQLDSALFESQKCALIAHTLHDAKRLFREKVKFAYEHLPDLIKLANPIKIETKEEMVFENGGSVTVSTSFRGGTLQRLHVSEFGKICAKYPDKAREIVTGAFEAVSLGGIVTLESTAEGRQGYFYEFSQIAEKLYLSKKTLTAQDWRFFFFAWWQNKEYAMTTEPISERLQAYFDSLKAKHGIQLSDEQKAWYQAKERTLGDDMKREYPSLPIEAFEQSIEGAYYAKQFAYLYANSRIDKLPDNEHLPIDTYWDLGVSDSTTIWFIRQVGDEFHIVDYYENSGEGLNHYIKVLKDKGYKYAKHVAPHDIDNRQLGADRAKTLRELARDGYEIDGQIYRLNFDVVPRTSNVNEDIEKVRQILPKCAFDAIKCEQGIKALESYRKEWNDKMGVWRDKPLHDWASHGADAFRYFATYQTKQQYATQLKVSMY*	hallmark_hmm	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0039	shell	direct	high	1472	0.999	GCA_009379015.1_00431
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	58319	59734	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	21960	23375	GCA_009379015_1_5_74	GCA_009379015_1_5_74	+	60987	.	PDB:7Z4W_L	Portal-Protein	MNPDYMLPELLEQIPKWTMIEDCYHGQDAVTKKGEIYLPNPSPINEDEAVKVQRYMDYQKRAVFYNVTKRTANAMAGMVFAKYPTLDIDPALEFLKTAVDGGALSFVGQARQAFLMMLLKGRGGLLVDYPLVKHGQYLPTKKDVSDDNLRPKIRLFDPQSIINWRVQMVNNTRKLTLLVLKENYIKQDDGFKVQTGEQLLVYRLIDGQIWHSIYQKQGTWQQIQSDIIRGVHEIPFVFFGANDNDESIDDAPLYDLAVLNLAHYRNSADYEEGNFIAGQPSLFITGLTKEWVTDIVNQGNPIRLGARTANILGSGANAFLLQSNANSGLYEAMQDKKEQMVALGARLIEPKGGIKTATQSQSDKADETSITAHLANNLSDAYSRAFNYCGQFLGIKHTCTVVFNTKFDTNKMTADERRQLIAEWQAGAITFSEMRARLIDDEIAFIEDDELAKAEIESDLGEITGHIDDEP*	hallmark_hmm	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0040	shell	direct	high	1415	0.999	GCA_009379015.1_00432
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	59746	60735	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	23387	24376	GCA_009379015_1_5_75	GCA_009379015_1_5_75	+	60987	.	PFAM:PF06152.10	minor-capsid-protein	MKTLINLERLKTKLANDFNVTIKDILAFLQRVVFNKEIGDLSQKEVNIVIKKTDSQLKTLFGAFITNLKTDWRGLFNHRYEVDSPKNIKALQKYADEVFAKPLRLDGKMGITLDELLDAFTDTERKKITNAIRLAHHDGLPNAKLVQMIRGSRARNYQDGILQTTTRHAKTIAHTGTAIVASQAKQQFIHDNKDIIKGIKILATLDLRTSSICRGLDGVFMPLDKARYPPYHFNCRSSFEIVYDGYQTPKQRASMDGVVKNQSYYEWLKNQPAQYQDEVLGKTRAKLFRDGGMTVERFRALQLDKHFTPLTLEQMRALEPKAFKKASIH*	hallmark_hmm	common_virus	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0041	shell	direct	high	989	0.999	GCA_009379015.1_00433
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	CDS	60788	60985	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	24429	24626	GCA_009379015_1_5_76	GCA_009379015_1_5_76	+	60987	.	.	hypothetical protein	MNLEELLKSLGLDDEAIGKVVEATKPDQAQAEEIERLRKHNETLLGEKKAESEKRRAEQAEKERLA	.	hypothetical_protein	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_CDS_0042	.	unmatched_CDS	none	0	0	.
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	tRNA	38527	38603	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	2168	2244	tRNA-Pro	tRNA-Pro	+	60987	.	tRNAscan-SE score: 77.8	Pro	NA	tRNAscan-SE	.	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_tRNA_0003	.	.	.	.	.	.
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	tRNA	38657	38733	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	2298	2374	tRNA-Arg	tRNA-Arg	+	60987	.	tRNAscan-SE score: 84.1	Arg	NA	tRNAscan-SE	.	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_tRNA_0004	.	.	.	.	.	.
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	tRNA	38752	38827	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	2393	2468	tRNA-His	tRNA-His	+	60987	.	tRNAscan-SE score: 67.2	His	NA	tRNAscan-SE	.	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_tRNA_0005	.	.	.	.	.	.
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	tRNA	36880	36961	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	521	602	tRNA-Leu	tRNA-Leu	-	60987	.	tRNAscan-SE score: 64.2	Leu	NA	tRNAscan-SE	.	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote	cenote	tRNA	36751	36824	GCA_009379015.1	NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015.1_NXCZ01000013.1	GCA_009379015.1|NXCZ01000013.1	GCA_009379015_1_5	GCA_009379015_1_5@C5	392	465	tRNA-Met	tRNA-Met	-	60987	.	tRNAscan-SE score: 78.9	Met	NA	tRNAscan-SE	.	C5	24628.0	36360	60988	GCA_009379015.1|NXCZ01000013.1@region_36361_60988@tool_cenote_tRNA_0001	.	.	.	.	.	.