core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	201993	203201	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	1	1209	GCA_009379475_1_15_186	GCA_009379475_1_15_186	+	258205	.	COG4536	Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains [Inorganic ion transport and metabolism]. 	MPRPRTQNLANLSFVSIAIFTVSVAAIFIPSTAFAAFELGGTPTNLALLIFFICLSLVVSFLCSISEATLLTMTPSYIDTLEEDNPKGAALLKSVKVDHIEKSISAILTLNTVAHTLGSLGAGAQAVIVFGNAWFGVFSGVMTLIILIGTEIIPKTIGTVYWRRFAMPVAYYVRTINVALLPVIWVTEKISRMLTRGNQEIGFNRHEFLALANQGESLGQMSEMETRIIKNSLALGMINVEDILTPRSVVSAFDENMTVGDVFASYPKLPFSRFPIFDEDLDNATGFILKSDLLIAKANQEIHTPIKQFRRDINFVFAKMKLFDLLDLMLKEQVHIALAVGEFGEVKGLVSLEDVLETLLGLEIVDEFDRVDDMQILARQLMDKRMARLGAKLEEDAPFDEK*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0001	persistent	direct	high	1208	0.999	GCA_009379475.1_00936
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	203307	203912	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	1315	1920	GCA_009379475_1_15_187	GCA_009379475_1_15_187	+	258205	.	PF13474.6	SnoaL-like domain	MAYSFIDKYIEYKGWFMKYSTRSVLRKAVAASMLTAVIRSAIQLTGKSFGKGASIGLFIGMIGVQSLITTNAYAISEQDVSQYASSMSSAANAQNIAQISRLIDDDAIISLSRGGKTTSLDKEGYLQLLQKSWATSSDYRYRINVADVVVTGNQARAQIVTTETWTQDGKPVTIKTASRATFSQVGNNAVLLRSVSQVTVD*	hhsuite_tools	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0002	persistent	direct	moderate	557	0.919	GCA_009379475.1_00937
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	204107	206977	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	2115	4985	GCA_009379475_1_15_188	GCA_009379475_1_15_188	+	258205	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MKKHTKSSISTQILKPLSLAISSCILVACSSTGTPAKPVSQTPKPIPQAKPSQQINISSGNTNLGNTKTGADVDVLDVQMLDALEALLQATDMSMVEGDELAIQRYGNLWDRVRRGYRINEMTNARIEAQKSWFYTRQTYLDRLTARASRYLHHTVAEAERRGIPSELALLPIIESSYDPTATSNAAAAGLWQFIPSTGRIYGLNQSATYDGRRDVIESTRAAYDFLTSLYNQFGSWELALAAYNAGPGRVSRAIKANQDQGLPTDYWSLKLPTETMNYVPRFLAVAQIVRSPNTYGINLPAIANHSHFRTVPVNYGVSLSEVATVTGLSVSELRLLNPALLNFTVDEIGPNRIVIPDSLPNQIDNQLASLKGYGFGGDYIATAPAQSITYVVPKSGATANTSSQQELIAANTLPTTIAQVTPNNTIVQEPALSKSEINLIAAEIQKTSPEVPAISPQDGNIQLNAVQTGQSVLDARGETKMLSFADGPKTQAVAQQPTQPVQVAVTPPAQPVQITVVSPTPEPISQPKPQLPPVTASIPVVSSPPVLVPPPPSRPRPEPASRPKPKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQTPSRQSTSTANTNSATHKVSAGESLTAIARKYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKTANTTMANTSSSPSVNKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQQTSQATQSTKNNQSTATHRVQSGESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKAESSTPSRLGNTKNNSTRTPANTNIGITENYTVRSGDSLTMLSNRFGVAIGDLATANGLASNANLRIGQTLKVPKLTTTYTVKAGDGLIALARRYGISTQELAKMNNLEPTADLRIGQVLTVPNK*	common_virus_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0003	persistent	direct	high	2870	1.0	GCA_009379475.1_00938
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	207134	208966	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	5142	6974	GCA_009379475_1_15_189	GCA_009379475_1_15_189	-	258205	.	COG1274	Phosphoenolpyruvate carboxykinase, GTP-dependent [Energy production and conversion]. 	MTAKITAPDFVRHQALIHWVAEIAALTKPAAIEWCDGSEEENQRLIDLMIKNGTMIKLNEDKHPNSYLAFSDPTDVARVEDRTYICSKEEIDAGATNNWVEPSQMRTKLNDLFDGCMAGRTMYVVPFSMGPLGSHIAHIGIEITDSPYVVVSMRKMARMGKEVYDVLGADGEYVPCVHTVGSPLTEGQKDVAWPCNDDKYIVHFPETREIWSYGSGYGGNALLGKKCLALRIASAMGREQGWLAEHMLILGVTNPQGKKHYIAAAFPSACGKTNFAMLIPPAGYEGWKVETVGDDIAWIKPSEDGKLYAINPEAGFFGVAPGTNTKTNSNCMSTLGSDVIYTNVAVTDDGEVWWEGKTKETPANLTNWKREPHTGAERAAHANARFTVSAKQCPSIDPQWENPEGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAATMGSETTAAATGQQGVVRRDPFAMLPFTGYNMADYFNHWLQMGENLGKKAKAAGNQLPKMFKVNWFRRDTNGDFVWPGFGQNMRVLQWIIERCEGTANAVRTPIGLVPTYDDINWDQSDFTKAQFELVTSQDKDAWIKELESHAELFDKLGERMPTALKAHNAKLKADIEQA*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0004	persistent	direct	high	1832	0.999	GCA_009379475.1_00939
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	209264	210682	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	7272	8690	GCA_009379475_1_15_190	GCA_009379475_1_15_190	+	258205	.	PDB:3BH0_A	Helicase-ATPase	MAKAKSSYICQNCGAIYGKWAGQCTDCGEWNTLVEAPNTSLPHHHKSKTTTAPRKTANYAGAVSAVMTLDHVGVTLETRMPTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGDSLSGSALYITGEESLSQVAMRAVRLGLPTDRLRVLAETNVDTICAALTTEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDSRFRMIRAIKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIHTSGMDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPVRLCVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRANAPAANHPQFKNIQIIAVDRLDEAIYQAFEINAG*	rep_hall_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0005	persistent	direct	high	1418	0.999	GCA_009379475.1_00940
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	210724	211443	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	8732	9451	GCA_009379475_1_15_191	GCA_009379475_1_15_191	-	258205	.	COG1118	ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. 	MSIKIQNIHKTFGDFVALGEISIDISTGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYFDSIDVTDIPVQHRGIGFVFQQYALFRHQTVAQNIAFGLTLLPRNTRPSANTIDRRVDELLDLVQLSHTKTRYPHELSGGQRQRVALARALATEPKLLLLDEPFGALDAKVRKSLRDSLKDIQREIGITSILVTHDQEEAQAISDKIVIMNHGQIEQIGTPSKLFAQPSSDFVVDFLGL*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0006	persistent	direct	high	719	0.999	GCA_009379475.1_00941
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	211536	212375	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	9544	10383	GCA_009379475_1_15_192	GCA_009379475_1_15_192	-	258205	.	COG4208	ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. 	MSHTSSYSYQKNPATRDKPWVRWSLIGIAVVFMGVMLVVPLVSVFYEALKEGWQAYQAALLEPDALASIKLTLITAAIILPINTIIGVALAYLITRHQFRGKFVITTLLDLPFAVSPVVAGLMFVLVFGANTRLGGYLESMGIQVIFATTGIVLATLFVTFAFIARELIPLMQAQGDSEEQAALTLGANGWQMFWKVTLPNIKWALLYGIILTNARAMGEFGAVSVVSGHIRGETNTVPLMIEIAYNEYAFTLAFALSSLLALLALITLVAQGLMSHKK*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0007	persistent	direct	high	839	0.999	GCA_009379475.1_00942
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	212420	213298	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	10428	11306	GCA_009379475_1_15_193	GCA_009379475_1_15_193	-	258205	.	TIGR02139	sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]	MLNQPIPLKNRARRVMPFFGLSMGISIFALGLLVILPFLMMILTTLQMSFDDIMQTIREPQVFAAIKLSLSMAMLATLTNLIFGTLAAWVLVRYEFWGKSFLNALVDLPFALPTAVTGIALATLYAPNGLFGQWFTHLGILLFNEPIKIAFTPIGIWLALVVVSFPFIVRAVQPVLAELSVEFEEAAAVMGAGRLTTFCRVILPEISPAMLIGAGMMFARATGEYGSVIFIAGNIPMQSEILPLIIVSKLEQFDVTGAACVSLFMLLISLVFLFTMNFIQWKLSARLGAKTN*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0008	persistent	direct	high	878	0.999	GCA_009379475.1_00943
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	213648	214088	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	11656	12096	GCA_009379475_1_15_194	GCA_009379475_1_15_194	+	258205	.	.	hypothetical protein	MMMKNKWMRGLAILVLSLPTVTYAKTAAPKASEAPEVSLTQEEQMAIDFCDFSAYGVMHIAGDHQGGATKSEALTNHDKRMAELKDLIDLDPETATMLDKYWKGAIDRIFQESVQKTDAEKQAFVMGVGESSFYSCLDQVLKTPKN*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0009	persistent	direct	high	440	0.998	GCA_009379475.1_00944
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	214119	215294	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	12127	13302	GCA_009379475_1_15_195	GCA_009379475_1_15_195	+	258205	.	PDB:1OYW_A	ATP-dependent-DNA-helicase	MTETTVKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKVTMLSGDVAQQKRERYLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDAFNLPALERHIDQKFKLNQFEFLDEHK*	common_virus_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0010	persistent	direct	high	1175	0.999	GCA_009379475.1_00945
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	215308	216483	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	13316	14491	GCA_009379475_1_15_196	GCA_009379475_1_15_196	+	258205	.	COG0635	Coproporphyrinogen III oxidase or related Fe-S oxidoreductase [Coenzyme transport and metabolism]. 	MYPDLLDPAHIPLSLYIHIPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIGGGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTIGINRLSIGVQSFDHNVLTVLGRIHNPDQASNAIRAARIAGFDRVNADLMYGLPNQNPSKAVNDIQTAIDAGATHLSWYQLTIEPNTTFYRTPPQLPDEEIMAEIETLGQSVLTKHGFYNYEVSAWHGPNDAPCQHNLNYWQFGDYLAIGAGAHGKLTLKNHPDYQDGIYRYQKSRQPKDYLAFEDAPKMVNFERISDDNLPFEFMMNALRLKDGVSTDVFETRTGLLISTIDNEMLPLQHQGLMVLDPLRIAPTRLGFRYVNYLVSQFI*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0011	persistent	direct	high	1176	1.0	GCA_009379475.1_00946
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	216565	216705	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	14573	14713	GCA_009379475_1_15_197	GCA_009379475_1_15_197	-	258205	.	COG5510	Predicted small secreted protein  [Function unknown]. 	MKKVLVASIAAVVVLTGCNAIKGFGKDVSKAGEAVSDTAQKVEKKI*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0012	persistent	direct	high	140	0.993	GCA_009379475.1_00947
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	216953	217498	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	14961	15506	GCA_009379475_1_15_198	GCA_009379475_1_15_198	+	258205	.	COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]. 	MSQFSDALIHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEEVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQLGFVGDIGQSVGYHKPTSR*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0013	persistent	direct	high	545	0.998	GCA_009379475.1_00948
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	217614	217829	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	15622	15837	GCA_009379475_1_15_199	GCA_009379475_1_15_199	-	258205	.	.	hypothetical protein	MTDSTTSPARQKATNTYRQKALANIALVISHTEPHALDALNQIMAHKDCSKAMAIKVALVEYANTLSQTSR*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0014	shell	direct	high	215	0.995	GCA_009379475.1_00949
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	218232	218522	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	16240	16530	GCA_009379475_1_15_200	GCA_009379475_1_15_200	-	258205	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MALECLDVHFSGLVADGEEIPLPTNFDAHTQNSQFDGMMWAWVAVDLSKYDVKSHKINITLPNHLIAKIDEKVAAHKSLYKSRSNYLAQLAMADLA*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0015	shell	direct	high	290	0.997	GCA_009379475.1_00950
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	218901	219098	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	16909	17106	GCA_009379475_1_15_201	GCA_009379475_1_15_201	-	258205	.	PFAM:PF16777.4	transcriptional-regulator	MPKIVANPKTRAQIQKDSDARRGVKPIGFKVPIEFAELLDELAKQSGKTKNIIIMEAVELWAKQL*	phrogs_hmm	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0016	persistent	direct	high	197	0.995	GCA_009379475.1_00952
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	219674	220111	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	17682	18119	GCA_009379475_1_15_202	GCA_009379475_1_15_202	+	258205	.	6AF2_A	HIT domain-containing protein	MFQLHPTLAKDTFLVGDFPLSTVRLMNDCQFPWLILVPRVSGIKEIYELSAADQVQFLRESSWVSSQMAKIFGADKMNVAALGNQVSQLHFHHIVRYQNDAAWPNPVWGHEAMPYTQEVLSHMQQTLMMALRGHHQMPFDWKMDV*	hhsuite_tools	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0017	persistent	direct	high	437	0.998	GCA_009379475.1_00953
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	220265	220927	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	18273	18935	GCA_009379475_1_15_203	GCA_009379475_1_15_203	+	258205	.	PRK00043	thiamine phosphate synthase. 	MTLQSIDKVPKLYLLTNDDELTTLLDKLERVFDTGAVSLLQVRRKSTLKLYDLATVYREAEMIVSLANDYDIKVVMNDSLELASHFGTGLHLGQRDGSVRVAREILGDHVVIGRTCHTDLALFKEAKREGATYGAMGTAFASITKPRAKIISKDILKKACELDFPLCVIGGITLENIHQLRDKLNGAAIDYIAVTADIMGHSVDTIADKCLAWQQKLNTW*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0018	persistent	direct	high	662	0.998	GCA_009379475.1_00954
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	220932	224486	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	18940	22494	GCA_009379475_1_15_204	GCA_009379475_1_15_204	+	258205	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MIDTFKPKLDLPTKANFKTILPLLGGADLSFWLALAAKSEERLIVMIANHQNELNQLDTELSFFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGVLLVSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQAGMNTHHAQKLPSSAKITEFRLLPAREFPLEEGKEMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQVLKAYPRVVINTNHDTAKIGVMESLPPPILPINHQAAKPLSELLSFIKSGQVPILLVAESAGRREIILELLKDKVAVKVVDNYQEFINNLDDFNTDCIALSVAPIERGLWLRDETGGLCIISETQIFGRQVLQTRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATNAIKQGKTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRTEMIDRFGTLPTQTQNLFAVHRIRIRAKALGITKIDATQTTISIEFRADTPIDGLAIIKLIQSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESTKTA*	common_virus_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0019	persistent	direct	high	3554	1.0	GCA_009379475.1_00955
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	224483	224752	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	22491	22760	GCA_009379475_1_15_205	GCA_009379475_1_15_205	-	258205	.	.	hypothetical protein	MPMSIPTKATVGYTQRRLFMVSMTVGLISLSGCQHIQVTKSPIPIIIHSHTKSPSQPKPTPTDAVPTKNRPISPPTQKSNTIFILEDWF*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0020	persistent	ambiguous	low	5	0.019	GCA_009379475.1_00955
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	224752	226014	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	22760	24022	GCA_009379475_1_15_206	GCA_009379475_1_15_206	-	258205	.	TIGR02800	tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MKSPITKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLSLAGLGTTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTVNGSIITPTFSPDGLSIAYSVQTKNNLPIIYIVSVSGGTPKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGTRRQSLYRYDFGTTHSTQIASYATNPRLSPDGSKLVYLSGGQIIIANTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRTIPTSGTVRDPIWSK*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0021	persistent	direct	high	1262	0.999	GCA_009379475.1_00956
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	226031	226831	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	24039	24839	GCA_009379475_1_15_207	GCA_009379475_1_15_207	-	258205	.	4G7X_B	Putative uncharacterized protein, TolA protein	MRLSDNHPTVNFDKSALILPILASVLLHTVIIIAVAAPLITPPTKPNTTIQTALVGQEAFNRAKTALSNHHANQNKPTATNTSSTITANDNDNAFMQAQNQHRYHPQVSTSATTTQAYHPPPNSAPFESNSPNIQNQPTNAHAKLAEYSNHVSDLEQSNHTESTPSRAQINAAITSVKHRIEAIWQHYPKQPNQTITFQVNMNQQGDVTSIQFGGGHPDLRESVEAAVYAAAPFYELGGMRDSIRLQFTTEQLIMDNNQTTNEPNH*	hhsuite_tools	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0022	persistent	direct	high	800	0.999	GCA_009379475.1_00957
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	226862	227296	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	24870	25304	GCA_009379475_1_15_208	GCA_009379475_1_15_208	-	258205	.	TIGR02801	TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MVTSNRFARRQRPLNSDMNVVPYIDVMLVLLVIFIVTAPMLATGIEVSLPKEQTKPITQADKLPVIVSIQADGNLYVSHKNAIDVPITPDKLDTLLRQMHQDNTDLQVMVNADADNAYSRIMQIMALIQNVGITQVSLLSESVQ*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0023	persistent	direct	high	434	0.998	GCA_009379475.1_00958
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	227322	228011	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	25330	26019	GCA_009379475_1_15_209	GCA_009379475_1_15_209	-	258205	.	TIGR02796	TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MNESISLISLVIEASVVVKLVMAILLLLSTISWVLIFHLGTKIGGIAKFDKRFERWFWTDDIDHQLSVVQAESERAGLELIFYTGFYDQNHQDQDSSLSDDKKVQIVERRLRMALGSEQVHLEKGLSTLATIGSVSPYIGLFGTVWGIMNAFIGLGQAESVGLATVAPSIAEALIATALGLFAAIPATMAYNHFATKSNTLYENRSLFCEGLISALVTNLAKKNTASTL*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0024	persistent	direct	high	689	0.999	GCA_009379475.1_00959
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	228287	232459	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	26295	30467	GCA_009379475_1_15_210	GCA_009379475_1_15_210	+	258205	.	PDB:5XDR_A	Replicative-polyprotein	MHSTDNLPVLAKDRHYLNKLKQKMNSTTGDLKTKCKIRYDAIYERSAEQVANRMDSIPKNLSEKLNHDLPVTAEADTLIQAIRDHQVVIIAGETGSGKTTQLPKLAMMAGRGITGQIGHTQPRRLAARSVAMRIAEELGEPLGQTVSFKIRFTEEGGKHSIVKLMTDGILLAELGSDKFLANYDTIIIDEAHERSLNIDFIMGYLKRLLPKRPDLKVIITSATLDTQRFSDYFAANGKPAPVYIVEGRSYPVEVRYHPLTDTIVSSQDDDAFDDIEDNLPRALTAAVNECFEDARTKGHPDQADILIFAATEAEIRELQEVLMLYEPAHTEILPLFARQSYGEQQKIFAPSGKGRRIIIATNVAETALTVPNIRYVIDLGFARISRYNYRSRIQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEEDFNSRPEFTEPEILRTNLASVILQMERLQLGDVNAFDFITPPDLRLVNDGRKLLIELGALDDKSFTKTRTKKGRTQLSSLTKIGQQMAKMPIDPRLARMLVAGDTFDCLADILIIVSALAVQDVRERPINKHAQADQKHALFRKEDSDFLFYLELFAALFDQHSTNDNQALSSNARRNFAKKHYLSYARIREWQKTHRQLSEMMAEMGFEINKQKNHQNDVKIDTKKGVRLSLKSGTSHQKSIKQALVGAKALKNDIDNKTSIHYANIHRALLSALLSFVAHKTDTVGEYLMARSQKARIFPASTLHKKGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPNLLKYHYFEPHWSKKAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDALVANQYGMQMKFLADNANKIKDIERIEDKLRRRDLLVDEESLYQFYDAKIPNHIASRKSFEEFYHDAENKTPNFLHFSDEDVLNEAVDDSREFPESWHLGGLRLPLSYVFDPAADNDGVTVHVPIKALAQVDPVALLWGISGWRYELVLQLLKTLPKEIRRQIVPIPDTCQKIFHQLDASSKMGLLDQLVAALKTLGVQAHAQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARHRKTSVQSIAIEQGVHHHFPNHFNFVKNKHTSGIVMQEFSALKADAAQSAVFIATFTEMNAALAEHKKGVLTLIKGHLGAKQKQLTGQIDKAFKLAFAPLGDLEKLKNIVVHATLEACLYDYGPDFDHKPVSQHGDHARAAIAGLITQNNQWLISHLPLDEREFDDCQDLILKNFLLVGQEILRNLKEIYTAWQTARGKLLMLDQEIFGENIEDIEDQLDDLQLANFVYQTDYRHWRQYPRYLQALNIRLDRLQHNLEADLDAVYLLDAHMERLARCVKNPKFAEYRWLVEEYRINLFAQPMKTVQPVSAKRLETLWANLTTQ*	common_virus_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0025	persistent	direct	high	4172	1.0	GCA_009379475.1_00960
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	232721	234217	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	30729	32225	GCA_009379475_1_15_211	GCA_009379475_1_15_211	+	258205	.	3PIK_A	Cation efflux system protein cusC	MSIKCQLVAIDNIIKPCYDKILNFVYFSTMKMPYFLLLGLLLVQQADADYSLLDAQKQLMSSSPAIQASHALYQADVLQAESLQKLHYPRISLNAHAFVLQQNSSIPLDHIKEQTAQHINTHFDHRFGSAPDGLLDALHNSTQTALDRLPDHQDVKLRHDGITPNITATIPIYTGGLISSTKNIANLQAQRGKFGLQERISLAKLNLIRHYFNVQLQKQLTDTQQNMLSAMQLHVDNAYKLEQQGFISRGQRMQFEVARNQVQRLYQSTQNQHQNSIYELAVLLGLPHIEPLSTPLFINTQHRPNWQALLKDSQNTPLNQKLKTDILLADENIALRQSTKKPKIAAVARYTLDDKPDWFAGVAVSYNLFLGIDRDKQIGAAHLQKQAAQLGHEQVNEHITTTMHTAYGEMVLAQKTHALLQQNRQAAKENLRIQTLSFQEGFGTVAGVVDAQSALSQIDSETALNAYRYLLALATLLHYTGTIDDFDDYLSLDDAHKL*	hhsuite_tools	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0026	persistent	direct	high	1496	0.999	GCA_009379475.1_00961
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	234264	235427	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	32272	33435	GCA_009379475_1_15_212	GCA_009379475_1_15_212	+	258205	.	COG1566	Multidrug resistance efflux pump [Defense mechanisms]. 	MTDKTDDVKPDTDGNHPKKQKPHTQAKSKPRPLALFLLLALIGSVLLVIIFGLIQSYGTPQNLPTANAVGGTNEPPKGVIAHLRQKITGPATFSIQGRVEGETVNISTKLPSRVAAIYVKEGQAVRAGEPLVQLVSPEIDAKKQQAAAMLQSALAFQSSTDRGTRQENVDTLYANWQSAKAQATLAEESYRRGEYLYQEGVISRQRRDEMRAAKQSSAQIAQAAQQQYLKAQRGRTDELKSSADAQVQIARAAVAEADALDAETMLYAPIDGTVSKIYIQSSELVMPAVPVMSLLDNHPTITISVQENQYSHVHALPKLTGFIPALNKTADFKIVHTDDEGEFATIKNTRQTGGYDIHSFKTKLEPITPIEGLKVGMSVIFDITVLP*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0027	persistent	direct	high	1163	0.999	GCA_009379475.1_00962
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	235455	236633	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	33463	34641	GCA_009379475_1_15_213	GCA_009379475_1_15_213	+	258205	.	PF12698.7	ABC-2 family transporter protein	MIVRFIRAFCQAFLRELNRLSCNRFDLAMAMIAPLVIIVLFGAMFYHGKAHHLPVALVDEDNSELSHLIYQHIHHNETIKTVLILDNVQDAHHAINRLDVGGYIHIPKDAQNHLVRGENTGIHIAYNQSFFSIGSAISSALSKSTKGGIAKFIQTKHLTGVLPHLSGNMPHVKISVLFNPNLSYEFFLEPFLVAAVLHLLLCCLVAHAIGQEFHENSVHEWLYHSPFGALFGKISVYVLIISLWHGLWQAWLIGVRGWFVAGSLFVLIIGQLLFYLAYALFGAMVVLKTQNINKSYGILAVYGGSSMSFAGVTLPLNNAPSFTQFWSQIIPFTPFARLQVEQWVIGSPFIITLAQLNSLLIFVLIFAIGSLLLLRRINKTLIAIPNTPKDDS*	hhsuite_tools	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0028	persistent	direct	high	1178	0.999	GCA_009379475.1_00963
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	236633	237733	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	34641	35741	GCA_009379475_1_15_214	GCA_009379475_1_15_214	+	258205	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MRRFIKQYLTIWLDVVKDRSIFLTMVLSVVFYGFFYPFAYQAQRPADLPIVIVDEEQSPLTQAIIHTTSHTPNIHVLAVVSDFRQAQMLVQSAKADGILLLPDNLSQSIHHGQTGGVGLYLSSAYFLRTQNIGAGLVSSLQATIIQELGQVTQTRHKPMPELIHQSALFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGYRQRLWRASACDFLAIYAVALTIGCLSCFYLFGFVFWWHDYPRGGNFWGMMLGVPIFVSCAIGVALLIVSWVADGAKVGVLLIFSSVPLFMLTGLAYPLMAMPKFLQPLAHALPTTQGVQMFIQLNQMGVSIQDVWQKMAYLASVAVLCLGVAFWRLRLVNRSV*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0029	persistent	direct	high	1100	0.999	GCA_009379475.1_00964
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	238058	238177	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	36066	36185	GCA_009379475_1_15_215	GCA_009379475_1_15_215	-	258205	.	PDB:2MXZ_A	L-alanyl-D-glutamate-peptidase-endolysin	MAQASGKLGVNVRWGGAWMVITGKAGTPQEWVKAYRAGG*	common_virus_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0030	.	unmatched_CDS	none	0	0	.
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	238369	238782	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	36377	36790	GCA_009379475_1_15_216	GCA_009379475_1_15_216	+	258205	.	COG1598	Predicted nuclease of the RNAse H fold, HicB family [Defense mechanisms]. 	MHYPVTLTPDTDGFCVTFRDIPEAISQGDTTDEALDMAQDALMVAMEFYFEDNRAVPMPSQAQDGEHLVSLPPSVWVKVLLLNEMIAQNVSQAELAKRMGIVPQSLTRLVDLSHTTKIDTLANAFAKLGKQLQVGLT*	mmseqs_cdd	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0031	shell	direct	high	413	0.998	GCA_009379475.1_00965
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	238762	239556	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	36770	37564	GCA_009379475_1_15_217	GCA_009379475_1_15_217	-	258205	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MRLTKTIKEAIHAHAKICYPAECCGLIIDGQYYPCDNVAVNPTEHFEIDHLDMVEMQEYHGEIQAIVHSHPNGNAEPSEIDRVQMSIHGLDWVICAFGYHADGKEYFDVKRHKPKAYQAPLLGREYHHGVQDCYSLVRDYYSRELDIHLPDFHRRDGWWEDENHEPLYEKNFTKAGFIKMQDETDLQKHDVILCRVGRTHHVNHALIYVGDGKLKSETTPDCVGNALILHHPHGGLSVREIYGKGWADRTAMVVRHQALSQTNL*	mmseqs_cdd	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0032	shell	direct	high	794	0.999	GCA_009379475.1_00966
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	239943	240146	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	37951	38154	GCA_009379475_1_15_218	GCA_009379475_1_15_218	+	258205	.	.	hypothetical protein	MADKASPQARKKATANYFDKSLARIGLVISHTEPHVLDALNQIMAHKDCSKAMAIKIALVEYAKTLD*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0033	shell	direct	high	203	0.995	GCA_009379475.1_00967
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	240143	240811	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	38151	38819	GCA_009379475_1_15_219	GCA_009379475_1_15_219	-	258205	.	PFAM:PF05100.11	minor-tail-protein-	MSFNTDIQQTTVQGFITLYELDARKLGGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGRASTPKLSIGDKINGIQGAVSALCRLYDDFARAKLTVTHTLQAYLDSHDAQNYRQQEWYIEQKVSENPSLGIVEFELSNPVDFEGQKIPVRQITTYCNEAVCGRYRGEVCGYTGTARFTHDGKPTDDPTLDRCSGLLAHCKLRDNEGSFCGFPAAGLV*	hallmark_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0034	shell	direct	high	668	0.999	GCA_009379475.1_00968
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	240895	241284	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	38903	39292	GCA_009379475_1_15_220	GCA_009379475_1_15_220	-	258205	.	.	hypothetical protein	MSETTLTEVSRTEAQVLQSFIAQVDFWKNQHGDKAATIEVIYYPEDDGFEVANGEPNNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTEFSLSYKNDRYGVRAALASEATDKADDGDDAKNTD*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0035	persistent	direct	high	389	0.997	GCA_009379475.1_00969
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	241389	241721	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	39397	39729	GCA_009379475_1_15_221	GCA_009379475_1_15_221	-	258205	.	PFAM:PF05939.12	minor-tail-protein	MKTFTWDISADSSETTALNTTITAFGDDYEQAVSFGINNSRKSWQCSKTDTKAVIDEIYRFLIDTKGVEPFNFKPLTDEPSIKVRLDGEISRQKTGGDVWQIGFTLKQVF*	hallmark_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0036	shell	direct	high	332	0.997	GCA_009379475.1_00970
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	241824	243062	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	39832	41070	GCA_009379475_1_15_222	GCA_009379475_1_15_222	-	258205	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MDLFEQVKKTSQELIDATNRHEATQEFESTLKDIKKQMAIMGSQEPLAEFLYDLQNAEKYAYYTTEQLATLKDEMIKLQNAKDAKQASDGIEESLKDINKQLALLGSNHPLDDFFYELEQTDKYAHATTDEINELIDAIFKLQAAKDTLNAKQAFDTLMKDTALANETPAQRLQREYDEKMAVIDRYEQMHSDKLENATSLRQQITERYEQAEKDAKVKNYQEHLTAFAGFLKNTAGEQSKAYRVMFAASKAYALADVGVKMGKAVADAWADPSAVTIWQKLANVAKVSLEQGHVLSMINAISPKGFATGGYTGNMGINQVAGVVHGQEYVLNAKATKRIGVGNLERLNRGDGIGGHVNHINVHVTVNSDGSNVQADTQMGKTMGEAMAKIARQVVIQESKQNGHLDRLYRR*	hallmark_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0037	shell	direct	high	1238	0.999	GCA_009379475.1_00971
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	243096	244331	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	41104	42339	GCA_009379475_1_15_223	GCA_009379475_1_15_223	-	258205	.	UniProtKB:A0A0R1V141_9LACO	Minor-tail-protein-	MIAAFAALVAAGVYVYRNWDTIKQKANDAWNSIKETWQGVGEWFGELWGKVKQTFFNWLSQMPKPVQDMVANIGEIFSTIVDVAGAVWDGIANIAKSVWHAITKFVSYAIDKIKPVIKSVLEFFKNAWDGLVGIAKTVWQAVVSVVSHVFDKISGIISTQFEAMKAIFMAGVTIFASIFNAGFEMVKNIFSTAFKVIKAVLTGDMQGVKDAIKDGFQKAVDILKKLVGNIVDALKKLGKDLLQVGRDAMQGFINGISEKIDAAVSKAKEMASSVKNAVTGFFDIHSPSRVMKQVGGWISEGLAIGIAYKAPIAAKEAKNLAKSVKNDLESELQKTAEEIFLTKQHIAGNPYAQLTKDIAFGKYGKQDTSRLQKLAQEQILQSNILTLTQQLHEAQQNLANVGLTNIEIMQR*	hallmark_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0038	shell	direct	high	1235	0.999	GCA_009379475.1_00972
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	244279	245691	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	42287	43699	GCA_009379475_1_15_224	GCA_009379475_1_15_224	-	258205	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MGGFLLGEFMSNTYRLDIQVNADSANTALGNLKEHFDKIEQSSGKASVGIDGFSDKADKASKSSKKAGDGAKKFGDDAKKAGNDIDDLKHKADGLKTAFGTLKGVMFTALAVAGVGGIIATADDMQTLTSQIKIATTSTKDYAHAMSEIERIAMGNMVSLDSVGQLYASNERSLKQLGKSQDEVIKFTENITTAMRVSGGSAESQAAALTQLGQAMASGVLRGDEFNSIAEQAPVIMELMADSLGVTTGKLRDMAKQGKLTSKVVYDAIAGASASDKLAEKSKKMSTTISGAMQNIQTQWRLGVHAIMNGEGGLSSVLADGINSIALGASSFVDALPAINQAITDTIAKAKEMGTAFLESDFGQSAIQTAKDAFEQLKSAMQGVVDIAGDVKAFFEKNPELAIALASGVGAVAGAFLLFKGVLIVWAGVATLATVAGGCVGGGDGSTNQSDYACDCSFCCTGGGRCVCIP*	hallmark_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0039	shell	direct	high	1412	0.999	GCA_009379475.1_00973
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	245724	246560	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	43732	44568	GCA_009379475_1_15_225	GCA_009379475_1_15_225	-	258205	.	.	hypothetical protein	MAQELPTTESLFDFLYLDSIKIRSFYAQLTGFGSLASIKANNALNSSLASEGAFGVNAMAKIDAKVNYATGENQSSEKTYDATPTLPREMIDKLDELGFISRELGENSAGNLVLLNGVLSITDIETLQNLLEPTMYFATEEEYKQLYGDRKRQAVKKKLEENKPVVQLIKAIPYALEARLKVGEDMVWMTLNRGEMVGNPHDINLKHGKVLFGEYYVLGVLDAIPNDDMNIDMTTGSFGDVILELSQSLKETMGRNTSSYGITPIAIFRVIRTNQQVK*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0040	shell	direct	high	836	0.999	GCA_009379475.1_00974
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	246523	246705	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	44531	44713	GCA_009379475_1_15_226	GCA_009379475_1_15_226	-	258205	.	.	hypothetical protein	MQDNAKKSDATHHSAQLLRDMFSCLNQAMSRETEKFHQEQKKVKEEINHGARITNHRISL*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0041	shell	direct	high	182	0.995	GCA_009379475.1_00975
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	246838	247050	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	44846	45058	GCA_009379475_1_15_227	GCA_009379475_1_15_227	-	258205	.	.	hypothetical protein	MIKPDAKEQGEFQITCHQATNQAMNYLHGLHAEIKRLGGVAPSLDIDEDEIARAIITRMVQGKRFMVNLD*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0042	shell	direct	high	212	0.995	GCA_009379475.1_00976
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	247495	247956	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	45503	45964	GCA_009379475_1_15_228	GCA_009379475_1_15_228	-	258205	.	.	hypothetical protein	MAFDLTLLKKDAKMSAKREIEFDGLELTLEIQASEAFKRAAAEVQKIANTPKKVTKDSLKRGNQDEIGEYEAMLFILGEYCISQWNVTADGEPLAINGDNFLILLDQGFEKDKLTQFITLLFETYASLSQEFEDNKAKLVKKSTTATNGKKSG*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0043	shell	direct	high	461	0.998	GCA_009379475.1_00977
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	248007	248153	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	46015	46161	GCA_009379475_1_15_229	GCA_009379475_1_15_229	-	258205	.	.	hypothetical protein	MEYITIIVDFMKYLIEKHGLFVIWLMVASLITLYKLDMILTAVHLFFN*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0044	shell	direct	high	146	0.993	GCA_009379475.1_00978
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	248237	249145	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	46245	47153	GCA_009379475_1_15_230	GCA_009379475_1_15_230	-	258205	.	PDB:5NGJ_B	Tail-tube-protein	MSSGAFVKTAYAKQTGETLPKTGWKTLPNISNGLTVATELTNSEMLSGSRMAKAGMVTSASVQGDIETELMFGAYDELIAAAFWSEWSAGASPNTLSVGATKHQFAIAKDFSDINVNHVFTGCVVSSFGLTIDTSSLIKLKFGMTGLGYQESKTESFAKTPTAQADTAKASGLSIGEIKVNGTKLDVCVESFSFELDNQTEVQKCLGDNIYGGNILAMLTNITGSMTIAYSQKAHEMISNQMTGTTLSLELPIKFGNSKYVIKIPKFQVSGEIPSPSGTDLVTVDLSYTVVDESPVIEKHTA*	hallmark_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0045	shell	direct	high	908	0.999	GCA_009379475.1_00979
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	249149	249337	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	47157	47345	GCA_009379475_1_15_231	GCA_009379475_1_15_231	-	258205	.	.	hypothetical protein	MPKNRHRRLLQLYGEINELGAILDAPKPKDIHPHEWILMKDQLYYMRQYYRVLKQRTDDTEN*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0046	shell	direct	high	188	0.995	GCA_009379475.1_00980
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	249337	249720	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	47345	47728	GCA_009379475_1_15_232	GCA_009379475_1_15_232	-	258205	.	PDB:2L25_A	tail-completion-protein	MDTAHIEQTLLTHIKSWEHFDDVPLAKENRNFKPPDGIWGRVTILGGVNQVRSISNTPNILQQGTLVIQLFCPQDLGTVAIKQKADSLANHLQTRRFGRLELLAPSIINAGFHDCYQINVSVAWRYY*	hallmark_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0047	shell	direct	high	383	0.997	GCA_009379475.1_00981
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	249818	250165	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	47826	48173	GCA_009379475_1_15_233	GCA_009379475_1_15_233	-	258205	.	PFAM:PF04883.11	tail-component	MGIKWNKKLSIEPIADKIDATYRKFAIDCYNNVIALSPVRKGRYKNAHHISIGSPSYAETGGGIELILGIPKHTYPLIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSALGNLS*	hallmark_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0048	persistent	direct	high	347	0.997	GCA_009379475.1_00982
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	250165	250521	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	48173	48529	GCA_009379475_1_15_234	GCA_009379475_1_15_234	-	258205	.	PFAM:PF12206.7	head-closure-Hc1	MGLNAEISTEITQAFDTDLKDAVKDFTGRRVILSDDDWAVNDTQVLSTINYSGRGVFTGFYAHEIDNKTIMQSDVKLICLQDELTEIPQIDDEINEMKIISISHDPAEVSFTIQLRGF*	phrogs_hmm	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0049	persistent	direct	high	356	0.997	GCA_009379475.1_00983
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	250523	250882	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	48531	48890	GCA_009379475_1_15_235	GCA_009379475_1_15_235	-	258205	.	CDD:cd08053	Head-Tail-Connector-Protein	MITLDDLTDIDKADEQTVVIVNAWLNKHKIRAFDKTPDPIRQAGRYIAKAWLDGDLFATRTEGQVISKSSKAGDVSVSKTYADGQMGQAMSQNEQIALALIEPYLQQPLGMFGLPLVRV*	hallmark_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0050	shell	direct	high	359	0.997	GCA_009379475.1_00984
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	250943	251146	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	48951	49154	GCA_009379475_1_15_236	GCA_009379475_1_15_236	-	258205	.	.	hypothetical protein	MSLPKDKVKPAFNFTYPSERAYFDESKSTLANAQVTDPAKSGADYGIKDPQVTEALTGTKSETAKVE*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0051	shell	direct	high	203	0.995	GCA_009379475.1_00985
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	251157	252173	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	49165	50181	GCA_009379475_1_15_237	GCA_009379475_1_15_237	-	258205	.	PDB:6R3A_A	Major-Capsid-Protein	MAKLREIFNKNVTLSYQVKDNLQRSKFWQSGAFVSDARLRPLLNSGSLTFDVPFIHPIDGNLEANYSNTIMTDIAMPRSIEGSKSKGRLALLNEGFIESRLESYLLGQSPLKLMAQMIDDYWLTQAENRAIATLFGLLNYDQSNGKKLSTDISKATADDSSGFDVHAFIDAEGSLDEMHQGSGLMIVHPLIATKMRKQRLLERVTTADDLKPIDMYNGRRLIQSKRATVIGTGKNAKYVSYLLGAGAFAADMVAGHDDLELERTANTGNGSGHTTLWTRRNMLIHPQGFSFIGEPSTLTGGTKNEALSPSWTDLTTAANWRLDADADATPIRFLITNL*	hallmark_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0052	shell	direct	high	1016	0.999	GCA_009379475.1_00986
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	252176	252814	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	50184	50822	GCA_009379475_1_15_238	GCA_009379475_1_15_238	-	258205	.	PFAM:PF06810.10	minor-structural-protein-	MSEENQTTVLSDDTQNQITQEQYNKLQAEVERLRKHSETLLAEKKQQSEQRKAEQAEKERLAEETARKKGDFEALEKQYQAKIQELNEQIAKRDKERDENLVKSHAQKLSSQLSDNPANQEILQILIEKRLSAKDGQLSVLDDSGAVSIMTLDDLAKQMQNCGKYDSLIIGTKSCGTGSNGQSAKRAGDYSEQERLALAHSNPALFNQLFLE*	hallmark_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0053	shell	direct	high	638	0.998	GCA_009379475.1_00987
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	252866	253870	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	50874	51878	GCA_009379475_1_15_239	GCA_009379475_1_15_239	-	258205	.	PFAM:PF06152.10	minor-capsid-protein	MKHLINLERFKVHLANKFKTTLNEIDEFLQLVVFRHEISELNYKEFELLIGESKQKLLGFLAGYALELTQDWQELYDYSYTLETKMIDDDKPDTLNMNEPQFDADSPIKLSAQVGVTLNQILAKFGDEQSTKISNAISYAYANGLPNQELVRIIRGTRKNRYQDGILQITTRHAKTIAHTGTAIVANQAKQQFIHDNKDIIKGIKVIATLDLRTSGICRHLDGEIMPIDKAVYPPYHYNCRTSFEIVYDGYQTPKQRASMDGVVKNQTYYEWLKNQPAQYQDEVLGKTRAKLFRDGGMTVERFRALQLDKYFTPLTLEQMRALEPKAFKKASIH*	hallmark_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0054	shell	direct	high	1004	0.999	GCA_009379475.1_00988
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	254173	254541	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	52181	52549	GCA_009379475_1_15_240	GCA_009379475_1_15_240	-	258205	.	.	hypothetical protein	MNEFIIPNSNSVSNDFNYSRTDLDAQEQQIAEFIKKGGKVINLDNSEQPKKKSAKKRDFNNQRINSKMHLVLCYLKRSGKRMTGLQIQEKFGISATTLGSQTRLLNAQASKQYNQNSNPSRK*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0055	shell	direct	high	368	0.997	GCA_009379475.1_00989
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	254940	255644	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	52948	53652	GCA_009379475_1_15_241	GCA_009379475_1_15_241	+	258205	.	PDB:2FJR_A	Repressor-protein-CI	MQDFSIRLNQAMSAKNLSLRDLSEKTGINYEMIRRYSKGQAKPRNDKMKLLAQCLGVPITWLDYGEGEMTKNNDKLTPITEWDDSTPLDDDEAEIPFYKDIAFACGHGAVNDDVTHETRKLRMGKRTLSNLGVMPENAFAVTARDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVSRLERW*	common_virus_hmm	common_virus	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0056	shell	direct	high	704	0.999	GCA_009379475.1_00990
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	255696	256601	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	53704	54609	GCA_009379475_1_15_242	GCA_009379475_1_15_242	+	258205	.	PF14337.6	Domain of unknown function (DUF4393)	MTAETFHLIPAITGAVSGAASVGLLNGPLQTLQDIWFVVYGHKWHYKVESIKAQQAMNIQAMQNNIQTGIEKIPANALKDPNVAIIGPALEASRFHMNEENIREMFANLIVSAMDERKDGQMHHAFVEIIKSLSPLDAKNLKYLNQDSAKNISPIANIIRQESNSYHMLYQHVFLGNPEVSDQDLIAPSIDNLSRLKLIDITYNDYLTDDSEYESFYHSAPYQEMTSALNKEHEALNLDISILQNPDLKIEFEGKILNKDERSEKLDQVMKGLESKIEIQKGVIKLTAFGKNFLSVCSPTT*	hhsuite_tools	nonviral_gene	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0057	shell	direct	high	905	0.999	GCA_009379475.1_00991
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	256630	256836	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	54638	54844	GCA_009379475_1_15_243	GCA_009379475_1_15_243	-	258205	.	.	hypothetical protein	MALAINIVLGANTVHFSRNIQKATQNAKKYLQGFALLAYMQAADKDKSVQDFLIIDPNPMTDEQKSLY*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0058	shell	direct	high	206	0.995	GCA_009379475.1_00992
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	256899	257303	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	54907	55311	GCA_009379475_1_15_244	GCA_009379475_1_15_244	-	258205	.	.	hypothetical protein	MMRLVMFGIKLLHSDDFIKSASSFGCFLAIMDKQTNKNHVYNLSTQVQRFELIDIDQVANLANSVQNGAISATVGTLLVRAGVLPALVALSIGAGLPNRTKDAYVCHIEFDDSKSAILLQLSKHKYQQFLKHIA*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0059	shell	direct	high	404	0.998	GCA_009379475.1_00993
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	CDS	257333	257440	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	55341	55448	GCA_009379475_1_15_245	GCA_009379475_1_15_245	-	258205	.	.	hypothetical protein	MTDKMREAYEAIKAEQALQRQSEALMCMFDRLEKA*	.	hypothetical_protein	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_CDS_0060	.	unmatched_CDS	none	0	0	.
GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote	cenote	tRNA	257761	257844	GCA_009379475.1	RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475.1_RCKM01000003.1	GCA_009379475.1|RCKM01000003.1	GCA_009379475_1_15	GCA_009379475_1_15@C10	55769	55852	tRNA-Leu	tRNA-Leu	-	258205	.	tRNAscan-SE score: 55.3	Leu	NA	tRNAscan-SE	.	C10	56213	201993	258206	GCA_009379475.1|RCKM01000003.1@region_201994_258206@tool_cenote_tRNA_0001	.	.	.	.	.	.