core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	37768	38070	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	1	303	GCA_009379515_1_1_36	GCA_009379515_1_1_36	-	64033	.	.	hypothetical protein	MIPFKPNQLRQKLQHPNPFAKPSLADLASFLRHLAFGLWKIWAVLALVHRPFGSAAYPVILVLPNHLSIRFSTLSCHLDTVIKSHAKHNNLLVICSKAKQ*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	38176	38499	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	409	732	GCA_009379515_1_1_37	GCA_009379515_1_1_37	+	64033	.	COG0607	Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]. 	MITELKITEFTPTKDKVIWDVRDAEQYQEGHIEHAVNHPLSTIDKTLLDATKGDIYVLCGGGTKAQKAAKLINELDNDRRIIHLTGGTRGAIASGMAIISEQPLERN*	mmseqs_cdd	nonviral_gene	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0002	persistent	direct	high	323	0.997	GCA_009379515.1_00038
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	39119	40291	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	1352	2524	GCA_009379515_1_1_38	GCA_009379515_1_1_38	+	64033	.	PDB:1Z19_B	Integrase	MSRTTKPLTNTQIDKAKPKEKIYRLYDGNGLVMNITPNGGKYWYLQYKHPTTGKAQMHKLGNYPSLGLADAREKSAFYHSLLAKNIDPKQHDLQQNAQNDLLTVYQSWAKTKDYTEKHHAKNNNYVRDTIAIIGNKSIADISVPDLVRVLKPVESIGQYEKLKKWRSLLNQIFAYAVASGHIEHNPALNLRGAFGTGEVRHNPAILDEKRLAELVRAIDEYHGSIVTRQALRYALLTFARPGEVRHLKWQDIHDDFWHYQPSKTRKKTGVEMITPLSSQALQIIHARQAIKCSDFVFPSVTGNTRPLSENTLNQALRRMGFDSSEQTTHGFRAIARTLLEEKFKYDYRMIEMQLGHLVRDSNGRAYNRVTWLDERKEMMQKWADYLDSIK*	common_virus_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0003	shell	direct	high	1172	0.999	GCA_009379515.1_00042
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	40315	40494	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	2548	2727	GCA_009379515_1_1_39	GCA_009379515_1_1_39	-	64033	.	COG3311	Predicted DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]. 	MNMSSLKRLRLPQVIEKTGWQRATIYKKIKEGEFIPPKKDGRISYWLEQDVDNWILTRA*	mmseqs_cdd	nonviral_gene	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0004	shell	direct	moderate	174	0.967	GCA_009379515.1_00043
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	40491	40670	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	2724	2903	GCA_009379515_1_1_40	GCA_009379515_1_1_40	-	64033	.	.	hypothetical protein	MRFNISSFISALLYSLLGALVMLTMSALSKYLVGTIILAPILFIICFGFAITISFWRIR*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0005	.	unmatched_CDS	none	0	0	.
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	40676	41158	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	2909	3391	GCA_009379515_1_1_41	GCA_009379515_1_1_41	-	64033	.	.	hypothetical protein	MNNQLFKAGDKVYYPLISNKILTLLKNDEDTVSVDLGVGNYTVFNPNGKKFKHHLAQSIFHATQLNYELLTNLYPHIQFEKPRPTPATIVKKMLDDGYAYVICNILLPNNVVKDIIKDYDDNVLFGEYGNCDCDEVIPLDAYTGKIIVDYKDGKPVLEDE*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0006	shell	direct	high	482	0.998	GCA_009379515.1_00044
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	41212	41481	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	3445	3714	GCA_009379515_1_1_42	GCA_009379515_1_1_42	-	64033	.	.	hypothetical protein	MNTEEERPFLKVEVSLDDIASKDWFTEAVENGISMLLCSNEPTLREYVLERRVLPNFTKIRTLVPAYYDQMRLIMKFNGSDLGFELPEE*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0007	cloud	direct	high	269	0.996	GCA_009379515.1_00045
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	41694	41903	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	3927	4136	GCA_009379515_1_1_43	GCA_009379515_1_1_43	-	64033	.	.	hypothetical protein	MVSIVFDLVADDGTHHKIDYSVDKPLTRYELANLAHSLGLNDLRDGQTDGINYNVKKSYITTILTEQNR*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0008	cloud	direct	high	209	0.995	GCA_009379515.1_00046
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	41849	42064	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	4082	4297	GCA_009379515_1_1_44	GCA_009379515_1_1_44	-	64033	.	.	hypothetical protein	MKAKRKPYQPKISGSMSFPLEYDSDTVAKFLATAKYTGLLSYAKGLKIIDLKPRWYPLYLIWWRMMAHITR*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0009	cloud	direct	high	215	0.995	GCA_009379515.1_00047
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	42086	42307	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	4319	4540	GCA_009379515_1_1_45	GCA_009379515_1_1_45	-	64033	.	.	hypothetical protein	MKIKALRWKKFDWGYYAMGVNQNYIIRAENKHYRLTIMPHDYGRPILQDAKTVEECKKIAHIQHEESVLRWFE*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0010	cloud	direct	high	221	0.995	GCA_009379515.1_00048
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	42316	43020	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	4549	5253	GCA_009379515_1_1_46	GCA_009379515_1_1_46	-	64033	.	PFAM:PF05037.12	single-strand-DNA-binding-protein	MNYFIACNDADAAKFGASNFIDGDTAQVVKITQAYYTQNDKGTQTLHLSLISSEKQTGDVAIHFANGQGERLIGYNLINAILKVTGTAGITQAQGTYSAYDFNAGGIVNKQGMVAPELVGKFFGAIFSKNYRINDKGEEKYSINLFGVYHAQTQQWAKQMINGEQALPGQIDQMLERAKAESEKSRANPYGKRQTQQVSNQQNSQVRQHPQSHVQPYSPPVQYGKNVSDDDMPF*	phrogs_hmm	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0011	shell	direct	high	704	0.999	GCA_009379515.1_00049
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	43017	43646	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	5250	5879	GCA_009379515_1_1_47	GCA_009379515_1_1_47	-	64033	.	CDD:cd01120	RecA-like_NTPase-recombinase	MAIGAFILGQSGTGKSFSLRNLNPDNVGFINVVGKYLPFRGAEFKQVVTDDPNLICDILMKSKAPIIIIDDFQYLMSNKYMRDSEVKGYDKYTENGKNIWQILNTVNYHMKPYQRVYILSHTDEVDGKTKLKTIGKLLDEKITPEGMVGIVLQTHIESGKNYFTTKNNGFTTVKTPFEMFDNDLITNDLEMVDNAICNYYNLPKNGENS*	common_virus_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0012	shell	direct	high	629	0.998	GCA_009379515.1_00050
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	43746	44243	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	5979	6476	GCA_009379515_1_1_48	GCA_009379515_1_1_48	-	64033	.	PFAM:PF05565.10	resistance-protein	MNLYQISKEAEESLIRLGEMLENGETPSDEEVNDLLDLRGDLHDKLLNYGKFIKNNSSDIDALDGEIRRLSAKKRALNNLNECLKSNMLAAMQANDIKKVDDPIIPIRRQKSIPSVCLDINADRLPKEFQKMEIKANNAAIAKALKDGIVIDGANLVQNEHIRIG*	common_virus_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0013	cloud	direct	high	497	0.998	GCA_009379515.1_00051
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	44212	44382	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	6445	6615	GCA_009379515_1_1_49	GCA_009379515_1_1_49	-	64033	.	.	hypothetical protein	MNDRDFMDFIELQFSEEELAQFDDDEQQYYDLLAHEFGLPFESEAKNESIPNQQRS*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0014	cloud	direct	high	170	0.994	GCA_009379515.1_00052
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	44379	44651	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	6612	6884	GCA_009379515_1_1_50	GCA_009379515_1_1_50	-	64033	.	.	hypothetical protein	MAVYRRQVIKMQKATATIRLGKSEQVVTGRISYQDGQYHSIILSVSVCLGGHEIELDLQAHDDWQIAEVLAIQAGLFEPIALSENIKGAA*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0015	shell	direct	moderate	243	0.89	GCA_009379515.1_00053
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	44714	45004	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	6947	7237	GCA_009379515_1_1_51	GCA_009379515_1_1_51	-	64033	.	.	hypothetical protein	MSKLRKRYINRGIVNFTVVYSIGRDATKIIHAIFMYLECGNPPREVCCNRKEIREYCTKLLNLQDFVFFQDFCPHLFKEFEQDKGAIFITGEQHDN*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0016	shell	direct	high	290	0.997	GCA_009379515.1_00054
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	45001	45162	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	7234	7395	GCA_009379515_1_1_52	GCA_009379515_1_1_52	-	64033	.	.	hypothetical protein	MRSTIQTVIFIVIMMFMLKGCLYAFDHECKIQEELGRQYYEESIHLQRENPNP*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0017	shell	direct	high	161	0.994	GCA_009379515.1_00055
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	45536	45688	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	7769	7921	GCA_009379515_1_1_53	GCA_009379515_1_1_53	+	64033	.	.	hypothetical protein	MGGEEELVKWTAYWYSMWSHQRETKIWKGFFKIPFSTQDDQKALNYLEGK*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0018	cloud	direct	high	152	0.993	GCA_009379515.1_00056
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	45690	46232	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	7923	8465	GCA_009379515_1_1_54	GCA_009379515_1_1_54	+	64033	.	.	hypothetical protein	MHELDYKHLLAERNSLEQMISNAKNPNSISVKSLQTRLNHVIEQIDRIDPMHLIQKAVITFRGKPVNGSKSISADFSAKALESLTDMVTSIAASATNTLSYHGAIPNKSQHNLQITGTAVGSFGFELSLPSPQDDLIDGSKNDTAYTLNHIQQLLQYGISGTDEQVSELIKIQPTVEYDS*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0019	cloud	direct	high	542	0.998	GCA_009379515.1_00057
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	46459	46989	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	8692	9222	GCA_009379515_1_1_55	GCA_009379515_1_1_55	-	64033	.	.	hypothetical protein	MLKQRIEKTYQKFPYRADFENGRTNIGGIDLTKEPERIDEIVELSNLPKAKEAIYQLNVQNTAFMTLGCAFGELSTFIGGYIEICLRPEIDNSLIDIMRLDELFFQHLAKNYNQRMVDYMERALMSWEVHFATVDQSDSLPIVAIFVGAQSYQDLDLTVELLIQRLHQDFLYLTMS*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0020	cloud	direct	high	530	0.998	GCA_009379515.1_00058
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	47035	47739	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	9268	9972	GCA_009379515_1_1_56	GCA_009379515_1_1_56	-	64033	.	PDB:2FJR_A	Repressor-protein-CI	MQKTAIERIIEVTGKTPAEIAKAINASPQSVNNWQKRGISKKGAQDIAKAYNLSLDWIITGEGSIHPLQSNISPNFESVDDWGNDTPLEPDEVEIPFYKDFSVACGHGTDLVVMENEKRRLRFSRLTLDRIGSHKDKVFATLAEGDSMSPTINDKDTIWIDESKTSIKDGKIFVFEYGGLCMCKRLYRLPNNGLKIVSDNTIDYPEWEITGEQKETNGFRLIGWVFHWSVMDSW*	common_virus_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0021	cloud	direct	high	704	0.999	GCA_009379515.1_00059
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	47887	48090	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	10120	10323	GCA_009379515_1_1_57	GCA_009379515_1_1_57	+	64033	.	PFAM:PF10078.8	DNA-binding-protein	MTDKELIQRLGGAKVLGDYLSLKNPHQTVWNWGSRGIPAKVKLDYPELFQTDNPPNLNMVKKKNDQN*	phrogs_hmm	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0022	cloud	direct	high	203	0.995	GCA_009379515.1_00060
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	48250	48684	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	10483	10917	GCA_009379515_1_1_58	GCA_009379515_1_1_58	+	64033	.	.	hypothetical protein	MNSIILTDTNDESNAFSKRRTDFDAQEREIAEFIKKGGKVINLDNTKRPKKKSVKSHHANFNNSGIKSEMHLVLCYLKRSGKRMTGLQIQEKFGISATTLGVQTRLLNAQAGKTLIENEKIRDENNRLKRVYWATRQGMKQDEF*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0023	cloud	direct	high	434	0.998	GCA_009379515.1_00061
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	48674	49726	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	10907	11959	GCA_009379515_1_1_59	GCA_009379515_1_1_59	+	64033	.	PDB:2RU8_A	Primosomal-protein-1	MSFKAVAWAAEQTKTTTSSQTLLLMILANFANEDFRAYPSLETLSKLTRLDKRTVRKCLIELQELGLIFDTGDKYKKQICVYYLNLLDDRVGDNGANLTVKGGTILHERGCKNDTPNKNDTPNNFVSKGGTILHKGGTILHERGCKNDTQSYYKPINKPINNPVSINTHAHESENSDHLNNSEQQSEMVKKLSSSANDFGEKTHTPAKKSKTKHSEQKPVDVKAYLAELGVSKQACDDFIVFRKQARRPLTITAVNRLVNEANKAGLTVEQAIEYALFKGWHSFTANYYHNSEQLNQGQNYARQSYQHNHQQSETEQYAQSLQQQFNAKYNQPQAGRVVDADFLDLEKPF*	rep_hall_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0024	cloud	direct	high	1052	0.999	GCA_009379515.1_00062
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	49692	50228	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	11925	12461	GCA_009379515_1_1_60	GCA_009379515_1_1_60	+	64033	.	PF06992.11	Replication protein P	MQTFLIWKSHFKSKLKSGDWNLQTAEIWSIALADMGWSEVAHTAAERKSLQLEWPPSSAKEFHKLAIFVLFDDVYRAHRQAIQGVFKSGVAYETTKRLGGHYELVRMDEKTSFSRWQIVYTQVCGEAIKGAVFTQPISRQIEQKQETQNIISAEMQNKINRFLTTFGKKKHGQQGVKV*	hhsuite_tools	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0025	cloud	direct	high	536	0.998	GCA_009379515.1_00063
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	50239	50586	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	12472	12819	GCA_009379515_1_1_61	GCA_009379515_1_1_61	+	64033	.	PFAM:PF06356.10	Endonuclease	MSMKYKNKKVKIDDITFDSKKEANRYLVLKQMQNSGLISDLTLQKPFILVSGTRIAGEPRKRPSVRYIADFVYFDNRVGKTVVEDVKSAITKKDKVYRLKKHLMKTVHNIDILEI*	common_virus_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0026	shell	direct	moderate	341	0.98	GCA_009379515.1_00064
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	50587	51252	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	12820	13485	GCA_009379515_1_1_62	GCA_009379515_1_1_62	+	64033	.	TIGR02170	thymidylate synthase, flavin-dependent. Two forms of microbial thymidylate synthase are known: ThyA (2.1.1.45) and ThyX (2.1.1.148). This model describes ThyX, a homotetrameric flavoprotein. Both enzymes convert dUMP to dTMP. Under oxygen-limiting conditions, thyX can complement a thyA mutation. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]	MSMTYKQAPIAVIYKDHMGDDNSVVNAARVSFAKDASNFTPEQNKNLIKYLAKHNHWTPFAHAFVTLHMKAPIAIHAQCVKHQIGFAMNTVSRRYVSEAPDYYLPIFRSKPIGSVKQGSGDEIKGSMQTNVQTVYSYYMQASIDLYKQLIDEGVTPEQARFVLPQGVMTEWVWSGSLMAWARFYNQRIDHHAQKEIQELAKQVDKIIKPLFPVAWEALTTD*	mmseqs_cdd	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0027	cloud	direct	high	665	0.998	GCA_009379515.1_00065
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	51206	51469	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	13439	13702	GCA_009379515_1_1_63	GCA_009379515_1_1_63	-	64033	.	.	hypothetical protein	MPLPFPNSCQLACAAWLGGGKPHWQHGKARICLSLFDTISPQKVVIKLFIFTAFIVPYALINSYHYLTLARPINQLLTLPMQLGIMA*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0028	cloud	ambiguous	low	48	0.182	GCA_009379515.1_00065
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	51604	52095	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	13837	14328	GCA_009379515_1_1_64	GCA_009379515_1_1_64	+	64033	.	PFAM:PF05772.11	NinB/-Orf-homologous-recombination-mediator	MMKQVFRIISESVMKHCFTEIVKQYESGQVCSVVITDKNETRTNAQNRLYWLWLKQIKDKTGQDDDDLHVMFKRLFLAKIYARDDGEMAQLFESLNTLKRQPNYEQQVALPFAKRFVTTTMATTAQFSEYLNEIEVWAFKNGIALSVPDDLKWIKDDEKISIS*	phrogs_hmm	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0029	shell	direct	high	488	0.992	GCA_009379515.1_00066
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	52105	52284	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	14338	14517	GCA_009379515_1_1_65	GCA_009379515_1_1_65	+	64033	.	.	hypothetical protein	MTTYYNEQNNQLAKVNSSKADKDGNIWVEIDGKAPVPMNYDDFIKNFRSMSNEFSRKAR*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0030	shell	direct	high	179	0.994	GCA_009379515.1_00067
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	52259	52639	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	14492	14872	GCA_009379515_1_1_66	GCA_009379515_1_1_66	+	64033	.	.	hypothetical protein	MSSQEKHGDIKIGSKWSRQPDYPVVTICDVKDGKVYFFGNGTNLTYYIDIQDFRDSFKKITPKISKYDRFSVLFVSLFAILMVVTLSIYLLFALSHYVGDDGKIILMAIFFFVFVFSAIEVFRNDS*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0031	cloud	direct	high	380	0.997	GCA_009379515.1_00068
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	52629	52901	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	14862	15134	GCA_009379515_1_1_67	GCA_009379515_1_1_67	+	64033	.	PFAM:PF11753.7	nucelotide-kinase	MTHSTNDEVTYQSNPLTGDPVNHPSHYISDPSGIECIQISENWSFCLGNALKYLWRNGKKDADTDIQDLEKAIWYIQREIERKKRVKGGA*	common_virus_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0032	cloud	direct	high	272	0.996	GCA_009379515.1_00069
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	52901	53293	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	15134	15526	GCA_009379515_1_1_68	GCA_009379515_1_1_68	+	64033	.	PFAM:PF06530.11	anti-termination-protein-Q-like	MSNEKLEAYKKEFIEWGRWVRCDPDRLSYPSPWFEMIMRDNIPCSSVSPNITDDRAMAIDKAVSRLSRYSVLQYQIFVLYFAKNISEYKIAKMADMRVFSNGRIKNARNIIKENLSGAMGYVIAFLENNA*	phrogs_hmm	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0033	shell	direct	high	392	0.997	GCA_009379515.1_00070
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	53605	54471	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	15838	16704	GCA_009379515_1_1_69	GCA_009379515_1_1_69	+	64033	.	PDB:3ME5_A	Cytosine-specific-methyltransferase	MNAQGKTVQKPKPPTIGSLFAGIGGFDVGFEKAGFHTSWQVEINPVCRAVLSDRFPHAKQFADVKTCLPELLSLPNGGQVDVIAGGFPCQDVSVAGKRAGLKGKRTSLFFNAMDIVDTLKPTYLVLENVAGLISSNDGKDLQTVIETLAQCGYVGFWRVLDSRYFGVPQKRRRVFLVAGLGKYPPFSLMADLGSVERISGKTESQSCWADAHHTLLAGVGSSAININCADIIAVPNGRGQMAVRERTTVDDGLCKGLDETNATEARAAGNAVCPPVAQWIASHLIKAI*	common_virus_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0034	shell	direct	high	866	0.999	GCA_009379515.1_00072
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	54500	54673	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	16733	16906	GCA_009379515_1_1_70	GCA_009379515_1_1_70	+	64033	.	.	hypothetical protein	MAQTKTDKSALDKAPAKNGFKYKPKFGLVIVCDDEPHQQTVFNHLKELGYKTKVVVV*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0035	cloud	direct	high	173	0.994	GCA_009379515.1_00073
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	54670	55809	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	16903	18042	GCA_009379515_1_1_71	GCA_009379515_1_1_71	+	64033	.	COG2401	ABC-type ATPase fused to a predicted acetyltransferase domain  [General function prediction only]. 	MNINIHHTCTDFDSYRAERIKSLFNVETGADVQITAELPIEFEHWQENGNWQLGVVVGGSGTGKTSIGKKIWQGVGIYNPTWQADKPIIDQIAVNDSVDKATACLSAVGLGTVPAWLRPYQVLSNGEQFRANLAKALADEPNRLIIDEFSSVVDRQIACIGAGAFAKAWKRTQGKQAILLTCHYDVLDWLEPDWVYNTDTGEFYVNRGSLRQNKRHKRPKISFEIYQTNWRFWELFEPHHYLKMPKMIAATNYIAVVDGKPVAHLAVSTRPGLIEARACRLVVMPEWQGAGIGMRFLNAVCEMWLQGNNRYNKPMRTIFHTSHPNLAQALRRDKKWTQISGALYSKSSNKCKDGKLLGRYGGHFRAVQGFRYLGDNFNE*	mmseqs_cdd	nonviral_gene	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0036	shell	direct	high	1139	0.999	GCA_009379515.1_00074
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	55748	56329	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	17981	18562	GCA_009379515_1_1_72	GCA_009379515_1_1_72	+	64033	.	cd08822	Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalytic core domain found in a group of proteins with unknown functions.  Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group.  This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.	MAVILERCRALGIWGIILMNKLKVMVVGQKWLAERLLAWCLNKPNIKVVAVSPPNETDKLAALATTHKIPITPHGKTLTADQVPNGVDIILTAHAYCFVEKQARDKARLGAVGYHPSLLPKYKGKTAVKDAFENGDKVVGGSLYQLDDGWDTGQVLAQRSISVDDNDTLTTLWQEKLAPIGVDLFREYLTRLF*	mmseqs_cdd	nonviral_gene	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0037	cloud	direct	moderate	527	0.905	GCA_009379515.1_00075
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	56366	56785	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	18599	19018	GCA_009379515_1_1_73	GCA_009379515_1_1_73	+	64033	.	PDB:4DZP_B	Small-Terminase	MTAKKPKMGRPTIYNEDLVAEFLYRVAKGRSVASVCSDDDMPHRATIYEWLAHNSDFSDRYARASEQRADQYFDEMLHIADNALPEEVQKAKLQIDTRKWVLARMNPKKYSGKSQDDNTDNAISLMAKFMKELGEDKGD*	hallmark_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0038	cloud	direct	high	419	0.998	GCA_009379515.1_00076
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	56785	58257	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	19018	20490	GCA_009379515_1_1_74	GCA_009379515_1_1_74	+	64033	.	PDB:2O0J_A	Large-Terminase	MFYKLADPLYRLNNLYYITDKTGKKVKFKMTAEQYNYFKHEHSRNIILKARQLGFTTQVCIMQLDSALFESQKCALIAHTLHDAKRLFREKVKFAYEHLPDLIKLANPIKIETKEEMVFENGGSVTVSTSFRGGTLQRLHVSEFGKICAKYPDKAREIVTGAFEAVSLGGIVTLESTAEGRQGYFYEFSQIAEKLHLSKKTLTAQDWRFFFFAWWQNKEYAMTTEPISERLQAYFDSLKAKHGIQLSDEQKAWYQAKERTLGDDMKREYPSLPSEAFEQSIEGAYYAKQFAYLYANSRIDKLPDNEHLPIDTYWDLGVSDSTTIWFIRQVGDEFHIVDYYENSGEGLNHYIKVLKDKGYKYAKHVAPHDIDNRQLGADRAKTLRELARDGYEIDGQIYRLNFDVVPRTSNVNEDIEKVRQILPKCAFDAIKCEQGIKALESYRKEWNDKMGVWRDKPLHDWASHGADAFRYFATYQTKQQYATQLKVSMY*	hallmark_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0039	shell	direct	high	1472	0.999	GCA_009379515.1_00077
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	58257	59672	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	20490	21905	GCA_009379515_1_1_75	GCA_009379515_1_1_75	+	64033	.	PDB:7Z4W_L	Portal-Protein	MNPDYMLPELLEQIPKWTMIEDCYHGQDAVTKKGEIYLPNPSPINEDEAVKVQRYMDYQKRAVFYNVTKRTANAMAGMVFAKYPTLDIDPALEFLKTTVDGGALSFVGQARQAFLMMLLKGRGGLLVDYPLVKHGQYLPTKKDVSDDNLRPKIRLFDPQSIINWRVQMVNNTRKLTLLVLKENYIKQDDGFKVQTGEQLLVYRLIDGQIWHSIYQKQGTWQQIQSDIIRGVHEIPFVFFGANDNDESIDDAPLYDLAVLNLAHYRNSADYEEGNFIAGQPSLFITGLTKEWVTDIVNQGNPIRLGARTANILGSGANAFLLQSNANSGLYEAMQDKKEQMVALGARLIEPKGGIKTATQAQSDKADETSITAHLANNLSDAYSRAFNYCGQFLGIKHTCTVVFNTKFDTNKMTADERRQLIAEWQAGAITFSEMRARLIDDEIAFIEDDELAKAEIESDLGEITGHIDDEP*	hallmark_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0040	shell	direct	high	1415	0.999	GCA_009379515.1_00078
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	59684	60673	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	21917	22906	GCA_009379515_1_1_76	GCA_009379515_1_1_76	+	64033	.	PFAM:PF06152.10	minor-capsid-protein	MKTLINLERLKTKLANDFNVTIKDILAFLQRVVFNKEIGDLSQKEVNIVIKKTDSQLKTLFGAFITNLKTDWRGLFNHRYEVDSPKNIKALQKYADEVFAKPLRLDGKMGITLDELLDAFTDTERKKITNAIRLAHHDGLPNAKLVQMIRGSRARNYQDGILAITTRHAKTIAHTGTAIVANQAKQQFIHDNKDIIKGIKVIATLDLRTSSICRGLDGVFMPLDKARYPPYHFNCRSSFEIVYDGYQTPKQRASMDGVVKNQTYYEWLKNQPAQYQDEVLGKTRAKLFRDGGMTVERFRALQLDKHFTPLTLEQMRALEPKAFKKASIH*	hallmark_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0041	shell	direct	high	989	0.999	GCA_009379515.1_00079
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	60726	61376	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	22959	23609	GCA_009379515_1_1_77	GCA_009379515_1_1_77	+	64033	.	PFAM:PF06810.10	minor-structural-protein-	MNLEELLKSLGLDDEAIGKVVEATKPDQAQAEEIERLRKHNETLLGEKKAESEKRRAEQAEKERLAEETARKKGDFETLEKQYQAKIQELNEQIAKRDKERDENLVKSHAQKLSSQLSDNPANQEILQILIEKRLFAKDGQLSVLDDSGAVSIMTLDDLAKQMQNCGKYDSLIIGTKSCGTGSNGQSAKRAGDYSEQERLALAHSNPALFNQLFLE*	hallmark_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0042	shell	direct	high	650	0.998	GCA_009379515.1_00080
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	61379	62395	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	23612	24628	GCA_009379515_1_1_78	GCA_009379515_1_1_78	+	64033	.	PDB:6R3A_A	Major-Capsid-Protein	MAKLREIFNKNVTLSYQVKDNLQRSKFWQSGAFVSDARLRPLLNSGSLTFDVPFIHPIDGNLEANYSNTIMTDIAMPRSIEGSKSKGRLALLNEGFIESRLESYLLGQSPLKLMAQMIDDYWLTQAENRAIATLFGLLNYDQSNGKKLSTDISKATADDSSGFDVHAFIDAEGTMDEMYQGKGLMVVHPLIATKMRKQRLLERVTTADDLKPIETYNGRTVIQSKRATVIGTGKNAKYVSYLLGAGAFAADMVAGHDDLELERTANTGNGSGHTTLWTRRNMLIHPQGFSFIAESSTLTGGTKNEALSPSWTDLTTAANWRLDADADATPIRFLITNL*	hallmark_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0043	shell	direct	high	1016	0.999	GCA_009379515.1_00081
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	62406	62609	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	24639	24842	GCA_009379515_1_1_79	GCA_009379515_1_1_79	+	64033	.	.	hypothetical protein	MSLPKDKVKPAFNFTYPSERAYFDESKSTLANAQVTDPAKSGADYGIKDPQATEALTDTKSETAKVE*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0044	shell	direct	high	203	0.995	GCA_009379515.1_00082
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	62670	63029	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	24903	25262	GCA_009379515_1_1_80	GCA_009379515_1_1_80	+	64033	.	CDD:cd08053	Head-Tail-Connector-Protein	MITLDDLTDIDKADEQTVVIVNAWLNKHKIRAFDKTPDPIRQAGRYIAKAWLDGDLFATRTEGQVISKSSKAGDVSVSKTYADGQMGQAMSQNEQIALALIEPYLQQPLGMFGLPLVRG*	hallmark_hmm	common_virus	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0045	shell	direct	high	359	0.997	GCA_009379515.1_00083
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	63026	63235	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	25259	25468	GCA_009379515_1_1_81	GCA_009379515_1_1_81	-	64033	.	7DTR_A	HTH motif, protein interaction, VIRAL	MKPHIDNHRPDPTYLRALLKKAELSQRKAAHMLGVSERMMRYYLVHTDDPNYRPMPYAVQFCLECLAKT*	hhsuite_tools	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0046	shell	direct	high	209	0.995	GCA_009379515.1_00084
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	63283	63675	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	25516	25908	GCA_009379515_1_1_82	GCA_009379515_1_1_82	-	64033	.	.	hypothetical protein	MNIIYKTEAGTKVKKAVKALNIKAKIKVTQHRYKVYVSITTTNAKLCEVEALKKVTSEMTSEIDDIYVTHNNNQTNEYAKMLNDLAVKFFCKKYRNNHQTDEELAEIAKPHIQKIINGTHRLSSEFWATI*	.	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0047	shell	direct	high	392	0.997	GCA_009379515.1_00085
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	CDS	63804	64031	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	26037	26264	GCA_009379515_1_1_83	GCA_009379515_1_1_83	+	64033	.	PFAM:PF12206.7	head-closure-Hc1	MKQEITQEIKQAFDGDLKDTVKDFTAKRVILSDDDWAVNDTQVLSTINYSGRGVFTGFYAHEIDNKTIMQQDTKLI	phrogs_hmm	hypothetical_protein	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_CDS_0048	.	unmatched_CDS	none	0	0	.
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	166173	166457	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	1	285	GCA_009379515_1_13_147	GCA_009379515_1_13_147	+	176304	.	.	hypothetical protein	MYNLSTQVQRFELIDIDQVANLANSVQNGAISATVGTLLVRAGVLPALVALSIGAGLPNRTKDAYVCHIEFDDSKSAILQLSKHKYQQFLKHIA*	.	hypothetical_protein	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0001	shell	direct	high	284	0.996	GCA_009379515.1_01070
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	166520	166738	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	348	566	GCA_009379515_1_13_148	GCA_009379515_1_13_148	+	176304	.	.	hypothetical protein	MALAINIVLGANTVHFSRNIQKATQNAKKYLQGFALLAYMQAADKDKSVQDFLIIDPNPMTDEQKKPLLSAL*	.	hypothetical_protein	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0002	shell	direct	high	218	0.995	GCA_009379515.1_01071
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	166756	167661	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	584	1489	GCA_009379515_1_13_149	GCA_009379515_1_13_149	-	176304	.	PF14337.6	Domain of unknown function (DUF4393)	MTAETFHLIPAITGAVSGTASVGLLNGPLQTLQDIWFVVYGHKWHYKVESIKAQQAMNIQAMQNNIQTGIEKIPANALKDPNVAIIGPALEASRFHMNEENIREMFANLIVSAMDERKDGQVHHAFVEIIKSLSPLDAKNLKYLNQDSAKNISPIANIIRQESNSYHMLYQHVFLGNPEVSDQDLIAPSIDNLSRLKLIDITYNDYLTDDSEYESFYHSAPYQEMTSALNKEHEALNLDISILQNPDLKIEFEGKILNKDERSEKLDQVMKGLESKIEIQKGIIKLTAFGKNFLSVCSPTT*	hhsuite_tools	nonviral_gene	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0003	shell	direct	high	905	0.999	GCA_009379515.1_01072
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	167713	168363	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	1541	2191	GCA_009379515_1_13_150	GCA_009379515_1_13_150	-	176304	.	PDB:2FJR_A	Repressor-protein-CI	MPSERAKADQFPKMIRRYSKGQAKPRNDKMKLLTQCLGVPITWLDYGEGEMTKNNDKLAPITEWDNGAPLDDDEAEIPFYKDIAFACGHGAVNDEVTHETRKLRMGKRTLSNLGVMSENAFAVTARDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVSRLERW*	common_virus_hmm	common_virus	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0004	shell	direct	high	650	0.998	GCA_009379515.1_01073
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	168567	168935	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	2395	2763	GCA_009379515_1_13_151	GCA_009379515_1_13_151	+	176304	.	.	hypothetical protein	MNEFIIPNSNSVSNDFNYSRTDLDAQEQQIAEFIKKGGKVINLDNSEQPKKKSAKKRDFNNQRINSKMHLVLCYLKRSGKRMTGLQIQEKFGISATTLGSQTRLLNAQASKQYNQNSNPSRK*	.	hypothetical_protein	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0005	shell	direct	high	368	0.997	GCA_009379515.1_01074
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	169238	170200	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	3066	4028	GCA_009379515_1_13_152	GCA_009379515_1_13_152	+	176304	.	PFAM:PF06152.10	minor-capsid-protein	MKHLINLERFKVHLANKFKTTLNEIDEFLQLVVFRHEISELNYKEFELLIGESKQELLGFLAGYALELTQDWQELYNYSYTLETKMVDDDKPDTLNMNEPQFDADSPIKLSAQVGVTLNQILAKFGDEQSTKISNAISYAYANGLPNQELVRIIRGTRKNRYQDGILQITTRHAKTIAHTGTAIVASQAKQQFIHDNKDIIKGIKVIATLDLRTSGICRHLDGEIMPIDKAVYPPYHYNCRTSFEIVYDGYQTPKQRASMDGVVKNQTYYEWLKNQPKAYQVEVLGKKKAKLFQESSVDEFKEFDKNLRPMTLDEIKAQL*	hallmark_hmm	common_virus	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0006	shell	direct	high	962	0.999	GCA_009379515.1_01075
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	170272	171024	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	4100	4852	GCA_009379515_1_13_153	GCA_009379515_1_13_153	+	176304	.	PFAM:PF06810.10	minor-structural-protein-	MQLKTDENGNVVVQDGKPVYMYDDGQGIAFDAMQNMAKISQLNAEAKQHREAKEKAETLLKAFDGLNADDAKKALETVKNLDDKRLIDAGEVEKVKAEAKKAFDEQLAQKDAQIKKINDDYRSAVIGGEFARSSFIKDKTLLPPDIAQNAFGRHFDMVDGKVVGYLNGEPIYSRTNMGELANFDEAFETIINHYPSKSDILRGSSASGAGVKQPLAQAGTTNLKRSQMSLEQKSAFIKEHGQTAYLNLGA*	hallmark_hmm	common_virus	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0007	shell	direct	high	752	0.999	GCA_009379515.1_01076
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	171028	171972	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	4856	5800	GCA_009379515_1_13_154	GCA_009379515_1_13_154	+	176304	.	PDB:4AN5_F	Major-Capsid-protein	MAITTNNDVLIYNELAQTAYLERLQENLAVFNKASNNAILLSDENLQGDFTKESFYKIAGEIEHRDVNSTSVVQAKKIAMAERVGVKVPFKFGPYETTEEAFKRRARSVDEFSLLLGQDYADALMAGYWKYATAALQGAVGSNSSMLVTAKLSEHGRKVITQGMRKFGDKFSNLSLLVMDAASYFDIVDGAITDKLYQEASTVVYGGAPGTMGIPVLVTDQAKKDTIFGLQQGAIRIRNSQLPAFRVYQDNTKENLVIGVRAEGAFNLDVLGYSYKDTAGANPNLATLGATANWEKYATSDKNTAGVILNIAEG*	hallmark_hmm	common_virus	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0008	shell	direct	high	944	0.999	GCA_009379515.1_01077
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	171974	172225	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	5802	6053	GCA_009379515_1_13_155	GCA_009379515_1_13_155	+	176304	.	.	hypothetical protein	MLVYSKQGKKVLGVDGEYRNPEYFEKTEQTDAVTVIGDYPHIELAYQAIGVNVIRLGVDDTPAVNDDGEQTKAKSRRTPKAVV*	.	hypothetical_protein	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0009	shell	direct	high	251	0.996	GCA_009379515.1_01078
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	172293	172457	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	6121	6285	GCA_009379515_1_13_156	GCA_009379515_1_13_156	+	176304	.	.	hypothetical protein	MSKTKKARIDAPAKNGFNYKPKFGLVIQCDDEAHQQTVFEQLKQLGYKAKVVVV*	.	hypothetical_protein	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0010	shell	direct	high	164	0.994	GCA_009379515.1_01079
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	172454	173119	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	6282	6947	GCA_009379515_1_13_157	GCA_009379515_1_13_157	+	176304	.	COG2401	ABC-type ATPase fused to a predicted acetyltransferase domain  [General function prediction only]. 	MIINIHHTCTDFDSYRAERVKSLFNVETGADVKITADLPIESEHWQDKDWQLGVIVGRSGTGKTSIGKQIWEGTPIYNPTWQTDQPIIDQIATNDSIDKATAYLSAVGLGTVPAWLRPYQVLSNGEQFRANLAKALADEPNRLIIDEFSSVVDRQIACIGASAFAKAWKRTKGKQAILLTCHYDVLDWLEPDWVYNTDTGEFTVNRGLLSGVTLAKTTHRL*	mmseqs_cdd	nonviral_gene	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0011	shell	direct	high	665	0.998	GCA_009379515.1_01080
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	173187	173609	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	7015	7437	GCA_009379515_1_13_158	GCA_009379515_1_13_158	+	176304	.	PFAM:PF12568.7	acetyltransferase	MIASTNYVAVVGGELVAHLAVSTLPGLIEARACRLVVMPEWQGAGIGMRFLNAVCQMWLEGNNRYNKSMRTIFHTSHPNLAQALRRDKKWTQISAKLHGGNKLRSQQTMVKASGKNAGSGYGGHFRAVQGFRYLGEDFDE*	phrogs_hmm	hypothetical_protein	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0012	cloud	direct	high	422	0.998	GCA_009379515.1_01081
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	173656	174135	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	7484	7963	GCA_009379515_1_13_159	GCA_009379515_1_13_159	+	176304	.	cd08822	Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalytic core domain found in a group of proteins with unknown functions.  Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group.  This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.	MARCLKKPNIEVVTVSPPNNTDRLARLATIHQIPIVVHDKTLTANQVPTGVDIILTAHAYCFVQKKARDKARLGAVGYHPSLLPKYKGKNAIQLAFNNGDKVMGGSLYQLDDGWDTGAVLAQSSVTVDSGDTLAILWRDKLAPLGLDLFEQFLNSHLTV*	mmseqs_cdd	nonviral_gene	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0013	shell	direct	high	479	0.998	GCA_009379515.1_01082
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	174176	174532	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	8004	8360	GCA_009379515_1_13_160	GCA_009379515_1_13_160	+	176304	.	CDD:cd08053	Head-Tail-Connector-Protein	MITLDDLTDIDKADEQTVVIVNAWLNKRNLKRFDDVPEPIKQAGLELAHAFMNGELLAGRTEGVVTSKSSKAGDVSVSKTYADGADGQAMGQHEMIALALMQPYIKKSYGVNALVGRL*	hallmark_hmm	common_virus	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0014	shell	direct	high	356	0.997	GCA_009379515.1_01083
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	174529	174888	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	8357	8716	GCA_009379515_1_13_161	GCA_009379515_1_13_161	+	176304	.	PFAM:PF12206.7	head-closure-Hc1	MKQEITADIANAFDTDLKDTVKDFTAKRIILSDDDWAVNDTQVLSTINYSGRGVFTGFYAHEIDNKTIMQQDTKLICLQSELTDRPQMNDSINQMKVMNISQDPAGICYFIQLRGTNGD*	phrogs_hmm	hypothetical_protein	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0015	persistent	direct	high	359	0.997	GCA_009379515.1_01084
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	174878	175225	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	8706	9053	GCA_009379515_1_13_162	GCA_009379515_1_13_162	+	176304	.	PFAM:PF04883.11	tail-component	MGIKWHKKITVEPIADKIDATYRKFAIDCYNNVIALSPVRKGRYKNAHHISIGSPSYAETGGGIELVLGLPKHTYPLIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSAIANLG*	hallmark_hmm	common_virus	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0016	persistent	direct	high	347	0.997	GCA_009379515.1_01085
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	175222	175422	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	9050	9250	GCA_009379515_1_13_163	GCA_009379515_1_13_163	-	176304	.	PFAM:PF16777.4	transcriptional-regulator	MPKITSTPKSQTQRTADSDAKRGFKTKGLKLHIDDISLIENLSKRLNIPQNQLIMDAVRAYQRQLD*	phrogs_hmm	hypothetical_protein	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0017	shell	direct	high	200	0.995	GCA_009379515.1_01086
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	175957	176118	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	9785	9946	GCA_009379515_1_13_164	GCA_009379515_1_13_164	+	176304	.	.	hypothetical protein	MFNNHKSNSQLQIGGKMTSKGADKVGLIQAVALCGFSLASIILAVSALILALK*	.	hypothetical_protein	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0018	cloud	direct	high	161	0.994	GCA_009379515.1_01087
GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote	cenote	CDS	176165	176302	GCA_009379515.1	RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515.1_RCKN01000003.1	GCA_009379515.1|RCKN01000003.1	GCA_009379515_1_13	GCA_009379515_1_13@C14	9993	10130	GCA_009379515_1_13_165	GCA_009379515_1_13_165	+	176304	.	PFAM:PF13554.5	tail-terminator	MNSFHIEQTLLTHIKSWEHFDDIPLAKENRNFKPPDGIWGRVTILG	phrogs_hmm	hypothetical_protein	C14	10132.0	166173	176305	GCA_009379515.1|RCKN01000003.1@region_166174_176305@tool_cenote_CDS_0019	.	unmatched_CDS	none	0	0	.
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	187	399	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	188	400	GCA_009379515_1_15_1	GCA_009379515_1_15_1	+	148367	.	.	hypothetical protein	MIKPDAKEQGEFQITCHQATNQAMNYLHGLHAEIKRLGGVAPSLDIDEDEIARAIITRMVQGKRFMVNLD*	.	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0001	shell	direct	high	212	0.995	GCA_009379515.1_01256
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	532	714	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	533	715	GCA_009379515_1_15_2	GCA_009379515_1_15_2	+	148367	.	.	hypothetical protein	MQDNAKKSDATHHSAQLLRDMFSCLNQAMSRETEKFHQEQKKVKEEINHGARITNHRISL*	.	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0002	shell	direct	high	182	0.995	GCA_009379515.1_01257
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	677	1513	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	678	1514	GCA_009379515_1_15_3	GCA_009379515_1_15_3	+	148367	.	.	hypothetical protein	MAQESPTTESLFDFLYLDSIKIRSFYAQLTGFGSLASIKANNALNSSLASEGALGVNAMAKIDAKVNYATGENQSSEKTYDATPTLPREMIDKLDELGFISRELGENSAGNLVLLNGVLSITDIETLQNLLEPTMHFATEEEYKQLYGDRKRQAVKKKLEENKPVVQLIKAIPYALEARLKVGEDMVWMTLNRGEMVGNPHDINLKHGKVLFGEYYVLGVLDAIPNDDMNIDMTTGSFGDVILELSQSLKETMGRNTSSYGITPIAIFRVIRTNQQAK*	.	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0003	shell	direct	high	836	0.999	GCA_009379515.1_01258
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	1546	5532	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	1547	5533	GCA_009379515_1_15_4	GCA_009379515_1_15_4	+	148367	.	PFAM:PF10145.8	minor-tail-protein	MGGFLLGEFMSNTYRLDIQVNADSANTALGNLKEHFDKIEQSSGKAGVGINGFSDKADKASKSSKKAGDEAKKASNAQKGLAASFKEATAVAAVGFAAISGTVALSIGKANEFESALAGISKVVDFKSPDGLKDMRAELEALSTQIPLTFTELAQITAAGGQLGVAEENLIAFTKLTADMATAFDISAESAGDSMAKLANIFSKPIEEMGEFGDMINTISNNMPAKASEIVESLTRIGGTAKAFGLAEKEAVALTSAMISLGKAPEVASTAINSMLTTLSTLDVADKDVAASLKAMGLNAQEFGKTIREDGYKAIMQLLEGIEQLPKDQKIGIVTDLFGKNFGDDIVQLAGAPDVLEKINELLAEQQGYIGSMAQEAKNVSSTSEARNQMFLNSLENASAALGEVFKPALDSVRDAVIPVLNAFADFTKENPTFVATIVGIAGAFTGVLTILGGVLAVLPILASGWAILTAGATVAVAPILGVVAAIAAVVAVGALLYDNWDLIKAKGQEIWAAVSDYASQAWESIQQAWQGVGEWFGELWDKVKQTFFDWLSQMPKPVQEMVANIGEIFSTIGEVVGAVWDGIADIAKSVWHAITEFVSYAIDKIKPVIKSVLEFFKNAWDGLVGIAKTVWQAVVSVVSHVFDKISGIISTQFEAMKAIFMAGVTIFASIFNAGFEMVKTIFSTAFKVIKAVLTGDMQGVKDAIKDGFQKAVDILKKLVGNIVDALKKLGKDLLQVGRDAMQGFINGISEKIGAAVSKAKQMASSVKNAITGFFDIHSPSRVMKQVGGWISEGLAIGIAYKAPIAAKEAKNLAKSVKNDLESELQKTAEEIFLTKQHIAGNPYAQLTKDIAFGKYGKQDTSRLQKLAQEQILQSNILTLTQQLHEAQQNLANVGLTSIEIMQRQYDETDKSVRASLDLFEQVKKTSQELIDATNRHEATQEFESTLKDIKKQMAIMGSQEPLAEFLYDLQNAEKYAYYTTEQLATLKDEMIKLQNAKDAKQASDGIEESLKDINKQLALLGSNHPLDDFFYELEQTDKYAHATTDEINELTDAIFKLQNAKDTLNAKQAFDTLMKDTALANETPAQRLQREYDEKMAVIDRYEQMHSDKLENATSLRQQITERYEQAEKDAKVKNYQEHLTAFAGFLKNTAGEQSKAYRVMFAASKAYALADVGVKMGKAVADAWADPSAVTIWQKLANVAKVSLEQGHVLSMINAISPKGFATGGYTGNMGINQVAGVVHGQEYVLNAKATKRIGVGNLERLNRGDGIGGHVNHINVHVTVNSDGSNVQADTQMGKTMGEAMAKIARQVVIQESKQNGHLDRLYRR*	hallmark_hmm	common_virus	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0004	shell	direct	high	3986	1.0	GCA_009379515.1_01259
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	5635	5967	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	5636	5968	GCA_009379515_1_15_5	GCA_009379515_1_15_5	+	148367	.	PFAM:PF05939.12	minor-tail-protein	MKTFTWDISADSSETTDLNTTITAFGDGYEQAVSFGINNSRKSWQCSRTDKKAVIDEIYRFLIDTKGVEPFNFKPLTDEPSIKVRLDGEVSRQKMGGDVWQIGFTLKQVF*	hallmark_hmm	common_virus	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0005	shell	direct	high	332	0.997	GCA_009379515.1_01260
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	6071	6454	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	6072	6455	GCA_009379515_1_15_6	GCA_009379515_1_15_6	+	148367	.	.	hypothetical protein	MSETTLTELSRTEAMVLQSFIAQVDFWKNQHGDKAATIEVIYYPEDDGFEVSNNEANNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTEFSLSYKNDRYGVRAALASEATDKADDGAEQTQ*	.	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0006	persistent	direct	high	383	0.997	GCA_009379515.1_01261
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	6597	7265	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	6598	7266	GCA_009379515_1_15_7	GCA_009379515_1_15_7	+	148367	.	PFAM:PF05100.11	minor-tail-protein-	MSFNTDIQQTTVQGFITLYELDARKLGGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGRASTPKLSIGDKINGIQGAVSALCRLYDDFARAKLTVTHTLQAYLDSHDAQNYRQQEWYIEQKVSENPSLGIVEFELSNPVDFEGQKIPVRQITTYCNEAVCGRYRGEVCGYTGTARFTHDGKPTDDPTLDRCSGLLAHCKLRDNEGSFCGFPAAGLV*	hallmark_hmm	common_virus	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0007	shell	direct	high	668	0.999	GCA_009379515.1_01262
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	7326	7736	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	7327	7737	GCA_009379515_1_15_8	GCA_009379515_1_15_8	+	148367	.	PFAM:PF11008.7	lipoprotein	MKSIIALTLLFVLTACSTKPIVNYTETVSLVDNNVTSDRSTIVVRRDMGFMGSGCPVEIYLNGVKYARLQSSQSINIHTTAGTHILSAKFTGRGFCQDRLNETEVTIQKNESKYYRLAMNANGDFHIFPTLSTPIQ*	phrogs_hmm	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0008	shell	direct	high	410	0.998	GCA_009379515.1_01263
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	7767	8585	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	7768	8586	GCA_009379515_1_15_9	GCA_009379515_1_15_9	+	148367	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MGGFLLEKFMRLTKTIKEAIHAHAKICYPAECCGLIIDGQYYPCDNVAVNPTEHFEIDPKDFARAESMGQIQAIVHSHPDGNAEPSEIDRVQMSIHGLDWVICAFGYHADGKEYFDVKCHKPKAYQAPLLGREYHHGVQDCYSLVRDYYSRELDIHLPDFHRRDGWWEDENHEPLYENNFTKAGFIKMQDETDLQKHDVILCRVGRTHHVNHALIYVGDGKLKSETTPDCVGNALILHHPHGSLSVREIYGDNWQRRTAMVVRHQASNQTNL*	mmseqs_cdd	common_virus	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0009	shell	direct	high	818	0.999	GCA_009379515.1_01264
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	8565	8777	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	8566	8778	GCA_009379515_1_15_10	GCA_009379515_1_15_10	-	148367	.	PFAM:PF15919.4	toxin-antitoxin-system-HicB-like	MVSLPPSVWVKVLLLNEMIAQNVSQAELAKRMGIVPQSLTRLVDLSHTTKIDTLANAFAKLGKQLQVGLV*	phrogs_hmm	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0010	shell	ambiguous	low	22	0.103	GCA_009379515.1_01264
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	8796	8978	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	8797	8979	GCA_009379515_1_15_11	GCA_009379515_1_15_11	-	148367	.	COG1598	Predicted nuclease of the RNAse H fold, HicB family [Defense mechanisms]. 	MHYPVTLTPDTDGFCVTFRDIPEAISQGDTTDEALDMAQDALMVAMEFYFEDNRAVPMPS*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0011	shell	direct	high	182	0.995	GCA_009379515.1_01265
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	8994	9200	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	8995	9201	GCA_009379515_1_15_12	GCA_009379515_1_15_12	+	148367	.	.	hypothetical protein	MVKAITPDEIRAAGEQFKSHPENNAPATADKLIANKSGFVLSERSLKNLQMIIAPLPKQWHRQAVSWA*	.	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0012	.	unmatched_CDS	none	0	0	.
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	9170	9289	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	9171	9290	GCA_009379515_1_15_13	GCA_009379515_1_15_13	+	148367	.	PDB:2MXZ_A	L-alanyl-D-glutamate-peptidase-endolysin	MAQASGKLGVNVRWGGAWMVITGKAGTPQEWVKAYRAGG*	common_virus_hmm	common_virus	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0013	.	unmatched_CDS	none	0	0	.
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	9614	10714	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	9615	10715	GCA_009379515_1_15_14	GCA_009379515_1_15_14	-	148367	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MRRFIKQYLTIWLDVVKDRSIFLTMVLSVVFYGFFYPFAYQAQRPADLPIVIVDEEQSPLTQAIIHTTSHTPNIHVLAVVSDFRQAQMLVQSAKADGILLLPDNLSQSIHHGQTGGVGLYLSSAYFLRTQNIGAGLVSSLQATIIQELGQVTQTRHKPMPELIHQSALFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGYRQRLWRASACDFLAIYAVALTIGCLSCFYLFGFVFWWHDYPRGGNFWGMMLGVPIFVSCAIGVALLIASWVADGAKVGVLLIFSSVPLFMLTGLAYPLMAMPKFLQPLAHALPTTQGVQMFIQLNQMGVSIQDVWQKMAYLASVAVLCLGVAFWRLRLVNRSV*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0014	persistent	direct	high	1100	0.999	GCA_009379515.1_01266
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	10714	11892	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	10715	11893	GCA_009379515_1_15_15	GCA_009379515_1_15_15	-	148367	.	PF12698.7	ABC-2 family transporter protein	MIVRFIRAFCQAFLRELNRLSCNRFDLAMAMIAPLVIIVLFGAMFYHGKAHHLPVALVDEDNSELSHLIYQHIHHNETIKTVLILDNVQDAHHAINRLDVGGYIHIPKDAQNHLVRGENTGIHIAYNQSFFSIGSAISSALSKSTKGGIAKFIQTKHLTGVLPHLPGNMPHVKISVLFNPNLSYEFFLEPFLVAAVLHLLLCCLVAHAIGQEFHENSVHEWLYHSPFGALFGKISVYVLIISLWHGLWQAWLIGVRGWFVAGSLFVLIIGQLLFYLAYALFGAMVVLKTQNINKSYGILAVYGGSSMSFAGVTLPLNNAPSFTQFWSQIIPFTPFARLQVEQWVIGSPFIITLAQLNSLLIFVLIFAIGSLLLLRRIKKTLIAMPNTPKDDS*	hhsuite_tools	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0015	persistent	direct	high	1178	0.999	GCA_009379515.1_01267
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	11920	13083	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	11921	13084	GCA_009379515_1_15_16	GCA_009379515_1_15_16	-	148367	.	COG1566	Multidrug resistance efflux pump [Defense mechanisms]. 	MTDKTDDVKPDTDGNHPKKQKPHTQAKSKPRPLALFLLLALIGSVLLVIIFGLIQSYGTPQNLPTANAIGSTNEPPKGVIAHLRQKITGPATFSIQGRVEGETVNISTKLPSRVAAIYVKEGQAVRAGEPLVQLISPEIDAKKQQAAAMLQSALAFQSSTDRGTRQENVDTLYANWQSAKAQATLAEESHRRGEYLYQEGVISRQRRDEMRAAKQSSAQIAQAAQQQYLKAQRGRTDELKSSADAQVQIARAAVAEADALDAETMLYAPIDGTVSKIYIQSSELVMPAVPVMSLLDNHPTITISVQENQYSHVHALPKLTGFIPALNKTADFKIVHTDDEGEFATIKNTRQTGGYDIHSFKTKLEPITPIEGLKVGMSVIFDITVLP*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0016	persistent	direct	high	1163	0.999	GCA_009379515.1_01268
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	13130	14626	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	13131	14627	GCA_009379515_1_15_17	GCA_009379515_1_15_17	-	148367	.	1YC9_A	Vibrio cholerae, outer membrane protein	MSIKCQLVAIDNIIKPCYDKILNFVYFSTMKMPYFLLLGLLLAQQADADYSLLDAQKQLMSSSPAIQASHALYQADVLQAESLQKLHYPRISLNAHAFVLQQNSSIPLDHIKEQTAQHINTHFDHRFGSAPDGLLDALHDSTQTALDRLPDHQDVKLRHDGITPNITATMPIYTGGLISSSKNIANLQAQRGKFGLQERISLAKLNLIRHYFNVQLQKQLTDTQQNMLSAMQLHVDNAYKLEQQGFISRGQRMQFEVARNQVQRLYQSTQNQHQNSIYELAVLLGLPHIEPLSTPLFINTQHRPNWQALLKDSQNTPLNQKLKTDILLADENIALRQSTKKPKIAAVARYTLDDKPDWFAGVAVSYNLFLGIDRDKQIGAAHLQKQAAKLGHEQVNEHITTTMHTAYGEMVLAQKTHALLQQNHQAAKENLRIQTLSFQEGFGTVAGVVDAQSALSQIDSETALNAYRYLLALATLLHYTGTIDDFDDYLSLDDAHKL*	hhsuite_tools	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0017	persistent	direct	high	1496	0.999	GCA_009379515.1_01269
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	14888	19060	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	14889	19061	GCA_009379515_1_15_18	GCA_009379515_1_15_18	-	148367	.	PDB:5XDR_A	Replicative-polyprotein	MHSTDNLPVLAKDRHYLNKLKQKMNSTTGDLKTKCKIRYDAIYERSAEQVANRMDSIPKNLSEKLNHDLPVTAEADTLIQAIRDHQVVIIAGETGSGKTTQLPKLAMMAGRGITGQIGHTQPRRLAARSVAMRIAEELGEPLGQTVSFKIRFTEEGGKHSIVKLMTDGILLAELGSDKFLANYDTIIIDEAHERSLNIDFIMGYLKRLLPKRPDLKVIITSATLDTQRFSDYFAANGKPAPVYIVEGRSYPVEVRYHPLTDTIVSSQDDDAFDDIEDNLPRALTAAVNECFEDARTKGHPDQADILIFAATEAEIRELQEVLMLYEPAHTEILPLFARQSYGEQQKIFAPSGKGRRIIIATNVAETALTVPNIRYVIDLGFARISRYNYRSRIQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEEDFNSRPEFTEPEILRTNLASVILQMERLQLGDVNAFDFITPPDLRLVNDGRKLLIELGALDDKSFTKTRAKKGRTQLSSLTKIGQQMAKMPIDPRLARMLVAGDAFDCLADILIIVSALAVQDVRERPINKHAQADQKHALFRKEDSDFLFYLELFAALFDQHSTNDNQALSSNARRNFAKKHYLSYARIREWQKTHRQLSEMMAEMGFEINKQKNHQNDVKIDTKKGVRLSLKPGTSHQKSIKQALVGAKALKNDIDNKTSIHYANIHRALLSALLSFVAHKTDTVGEYLMARSQKARIFPASTLHKKGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPNLLKYHYFEPHWSKKAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDSLVANQYGMQMKFLADNANKIKDIERIEDKLRRRDLLVDEESLYQFYDAKIPNHIASRKSFEEFYHDAENKTPNFLHFSDEDVLNEAVDDSREFPESWHLGGVRLPLSYVFDPAADNDGVTVHVPIKALAQVDPVALLWGISGWRYELVLQLLKTLPKEIRRQIVPIPDTCQKIFHQLDASSKMGLLDQLVAALKTLGVQAHAQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARHRKASVQSIAIEQGVHHHFPNHFNFVKNKHTSGIVMQEFSALKADAAQSAVFIATFTEMNAALAEHKKGVLTLIKGHLGAKQKQLTGQIDKAFKLAFAPLGDLEKLKNIVVHATLEACLYDYGPDFDHKPVSQHGDHARAAIAGLITQNNQWLISHLPLDEREFDDCQDLILKNFLLVGQEILRNLKEIYTAWQTARGKLLMLDQEIFGENIEDIEDQLDDLRLANFVYQTDYRHWRQYPRYLQALNIRLDRLQHNLEADLDAVYLLDTHMERLARCVKNPKFAEYRWLVEEYRINLFAQPMKTVQPVSAKRLETLWANLTTQ*	common_virus_hmm	common_virus	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0018	persistent	direct	high	4172	1.0	GCA_009379515.1_01270
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	19337	20026	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	19338	20027	GCA_009379515_1_15_19	GCA_009379515_1_15_19	+	148367	.	TIGR02796	TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MNESISLISLVIEASVVVKLVMAILLLLSTISWVLIFHLGTKIGGIAKFDKRFERWFWTDDIDHQLSVVQAESERAGLELIFYTGFYDQNHQDQDSSLSDDKKVQIVERRLRMALGSEQVHLEKGLSTLATIGSVSPYIGLFGTVWGIMNAFIGLGQAESVGLATVAPSIAEALIATALGLFAAIPATMAYNHFATKSNTLYENRSLFCEGLISALVTNLAKKNTASTL*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0019	persistent	direct	high	689	0.999	GCA_009379515.1_01271
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	20052	20486	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	20053	20487	GCA_009379515_1_15_20	GCA_009379515_1_15_20	+	148367	.	TIGR02801	TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MVTSNRFARRQRPLNSDMNVVPYIDVMLVLLVIFIVTAPMLATGIEVSLPKEQTKPITQADKLPVIVSIQADGNLYVSHKNAIDVPITPDKLDTLLRQMHQDNTDLQVMVNADADNAYSRIMQIMALIQNVGITQVSLLSESVQ*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0020	persistent	direct	high	434	0.998	GCA_009379515.1_01272
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	20517	21317	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	20518	21318	GCA_009379515_1_15_21	GCA_009379515_1_15_21	+	148367	.	4G7X_B	Putative uncharacterized protein, TolA protein	MRLSDNHPTVNFDKSALILPILASVLLHTVIIIAVAAPLITPPTKPNTTIQTALVGQEAFNRAKTALSNHHANQNKPTATNTSSTITANDNDNAFMQAQNQHRYHPQVSTSATTTQAYHPPPNSAPFESNSPNIQNQPTNAHAKLAEYSNHVSDLEQSNHTESTPSRAQINAAITSVKHRIEAIWQRYPKQPNQTITFQVNMNQQGDVTSIQFGGGHPDLRESVEAAVYAAAPFYELGGMRDSIRLQFTTEQLIMDNNQTTNEPNH*	hhsuite_tools	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0021	persistent	direct	high	800	0.999	GCA_009379515.1_01273
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	21334	22596	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	21335	22597	GCA_009379515_1_15_22	GCA_009379515_1_15_22	+	148367	.	TIGR02800	tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MKSPITKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLSLAGLGTTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTVNGSIITPTFSPDGLSIAYSVQTKNNLPIIYIVSVSGGTPKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTFTTFNGAENAPNYLADASGFIYTADKGTRRQSLYRYDFGTTHSTQIASYATNPRLSPDGSKLVYLSGGQIIIANTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRTIPTSGTVRDPIWSK*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0022	persistent	direct	high	1262	0.999	GCA_009379515.1_01274
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	22862	26416	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	22863	26417	GCA_009379515_1_15_23	GCA_009379515_1_15_23	-	148367	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MIDTFKPKLDLPTKANFKTTLPLLGGADLSFWLALAAKSEERLIVMIANHQNELNQLDTELSFFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGVLLVSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQAGMNTHHAQKLPSSAKITEFRLLPAREFPLEAGKEMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKAGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQVLKAYPRVVINTNHDTAKIGAMESLPPPILPINHQAAKPLSELLSFIKSGQVPILLVAESAGRREIILELLKDKVAVKVVDNYQEFINNLDDFNTDCIALSVAPIERGLWLRDETGGLCIISETQIFGRQVLQTRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATNAIKQGKTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRTEMIDRFGTLPTQTQNLFAVHRIRIRAKALGITKIDATQTTISIEFRADTPIDGLAIIKLIQSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESTKTA*	common_virus_hmm	common_virus	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0023	persistent	direct	high	3554	1.0	GCA_009379515.1_01275
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	26421	27083	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	26422	27084	GCA_009379515_1_15_24	GCA_009379515_1_15_24	-	148367	.	PRK00043	thiamine phosphate synthase. 	MTLQSIDKVPKLYLLTNDDELTTLLDKLERVFDTGAVSLLQVRRKSTLKLYDLATVYREAEMIVSLANDYDIKVVMNDSLELASHFGTGLHLGQRDGSVRVAREILGDHVVIGRTCHTDLALFKEAKREGATYGAMGTAFASITKPRAKIISKDILKKACELDFPLCVIGGITLENIHQLRDKLNGAAIDYIAVTADIMGHSVDTIADKCLAWQQKLNTW*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0024	persistent	direct	high	662	0.998	GCA_009379515.1_01276
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	27237	27674	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	27238	27675	GCA_009379515_1_15_25	GCA_009379515_1_15_25	-	148367	.	6AF2_A	HIT domain-containing protein	MFQLHPTLAKDTFLVGDFPLSTVRLMNDCQFPWLILVPRVSGIKEIYELSAADQVQFLRESSWVSSQMAKIFGADKMNVAALGNQVSQLHFHHIVRYQNDAAWPNPVWGHEAMPYTQEVLSHMQQTLMMTLRGHHQMPFDWKMDV*	hhsuite_tools	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0025	persistent	direct	high	437	0.998	GCA_009379515.1_01277
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	28250	28447	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	28251	28448	GCA_009379515_1_15_26	GCA_009379515_1_15_26	+	148367	.	PFAM:PF16777.4	transcriptional-regulator	MPKIVANPKTRAQIQKDSDARRGVKPIGFKVPIEFAELLDELAKQSGKTKNIIIMEAVELWAKQL*	phrogs_hmm	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0026	persistent	direct	high	197	0.995	GCA_009379515.1_01278
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	28712	28942	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	28713	28943	GCA_009379515_1_15_27	GCA_009379515_1_15_27	+	148367	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MLYPIAILKGGDKTAHGIFFPDVPNLASTCDELQDIHKMALECLDVHFSGLVADGEEISHCLPILMHTPKTANLTV*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0027	cloud	direct	high	230	0.996	GCA_009379515.1_01279
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	28939	29118	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	28940	29119	GCA_009379515_1_15_28	GCA_009379515_1_15_28	+	148367	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MMWAWVDVDLSKYDVKSHKINITLPNHLIAKIDEKVAAHKSLYKSRSNYLAQLAMADLA*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0028	shell	direct	high	179	0.994	GCA_009379515.1_01280
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	29521	29736	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	29522	29737	GCA_009379515_1_15_29	GCA_009379515_1_15_29	+	148367	.	.	hypothetical protein	MTDSTTSPARQKATNTYRQKALANIALVISHTEPHVLDALNQIMAHKDCSKAMAIKVALVEYANTLSQTSR*	.	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0029	shell	direct	high	215	0.995	GCA_009379515.1_01281
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	29852	30397	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	29853	30398	GCA_009379515_1_15_30	GCA_009379515_1_15_30	-	148367	.	COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]. 	MSQFSDALIHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEEVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQLGFVGDIGQSVGYHKPTSR*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0030	persistent	direct	high	545	0.998	GCA_009379515.1_01282
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	30645	30785	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	30646	30786	GCA_009379515_1_15_31	GCA_009379515_1_15_31	+	148367	.	COG5510	Predicted small secreted protein  [Function unknown]. 	MKKVLVASIAAVVVLTGCNAIKGFGKDVSKAGEAVSDTAQKVEKKI*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0031	persistent	direct	high	140	0.993	GCA_009379515.1_01283
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	30867	32042	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	30868	32043	GCA_009379515_1_15_32	GCA_009379515_1_15_32	-	148367	.	COG0635	Coproporphyrinogen III oxidase or related Fe-S oxidoreductase [Coenzyme transport and metabolism]. 	MYPDLLDPAHIPLSLYIHIPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIGGGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTIGINRLSIGVQSFDHNALTVLGRIHNPDQASNAIRAARIAGFDRVNADLMYGLPNQNPSKAVNDIQTAIDAGATHLSWYQLTIEPNTTFYCTPPQLPDEEIMAEIETLGQSVLTKHGFYNYEVSAWHGPNDAPCQHNLNYWQFGDYLAIGAGAHGKLTLKNHPDYQDGIYRYQKSRQPKDYLAFEDAPKMVNFERISDDNLPFEFMMNALRLKDGVSTDVFETRTGLLISTIDNEMLPLQHQGLMVLDPLRIAPTRLGFRYVNYLVSQFI*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0032	persistent	direct	high	1175	0.999	GCA_009379515.1_01284
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	32056	33231	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	32057	33232	GCA_009379515_1_15_33	GCA_009379515_1_15_33	-	148367	.	PDB:1OYW_A	ATP-dependent-DNA-helicase	MTETTVKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKVTMLSGDVAQQKRERYLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDAFNLPALERHIDQKFKLNQFEFLDEHK*	common_virus_hmm	common_virus	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0033	persistent	direct	high	1175	0.999	GCA_009379515.1_01285
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	33262	33702	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	33263	33703	GCA_009379515_1_15_34	GCA_009379515_1_15_34	-	148367	.	.	hypothetical protein	MMMKNKWMRGLAILVLSLPTVTYAKTAAPKASEAPEVSLTQEEQMAIDFCDFSAYGVMHIAGDHQGGATKSEALTNHDKRMAELKDLIDLDPETATMLDKYWKGAIDRIFQESVQKTDAEKQAFVMGVGESSFYSCLDQVLKTPKN*	.	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0034	persistent	direct	high	440	0.998	GCA_009379515.1_01286
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	34052	34930	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	34053	34931	GCA_009379515_1_15_35	GCA_009379515_1_15_35	+	148367	.	TIGR02139	sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]	MLNQPIPLKNRARRVMPFFGLSMGISIFALGLLVILPFLMMILTTLQMSFDDIMQTIREPQVFAAIKLSLSMAMLATLTNLIFGTLAAWVLVRYEFWGKSFLNALVDLPFALPTAVTGIALATLYAPNGLFGQWFTRLGILLFNEPIKIAFTPIGIWLALVVVSFPFIVRAVQPVLAELSVEFEEAAAVMGAGRLTTFCRVILPEISPAMLIGAGMMFARATGEYGSVIFIAGNIPMQSEILPLIIVSKLEQFDVAGAACVSLFMLLISLVFLFTMNFIQWKLSARLGAKTN*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0035	persistent	direct	high	878	0.999	GCA_009379515.1_01287
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	34975	35814	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	34976	35815	GCA_009379515_1_15_36	GCA_009379515_1_15_36	+	148367	.	COG4208	ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. 	MSHTSSYSYQKNPATRDKPWVRWSLIGIAVVFMGVMLVVPLVSVFYEALKEGWQAYQAALLEPDALASIKLTLITAAIILPINTIIGVALAYLITRHQFRGKFVITTLLDLPFAVSPVVAGLMFVLVFGANTRLGGYLESMGIQVIFATTGIVLATLFVTFAFIARELIPLMQAQGDSEEQAALTLGANGWQMFWKVTLPNIKWALLYGIILTNARAMGEFGAVSVVSGHIRGETNTVPLMIEIAYNEYAFTLAFALSSLLALLALITLVAQGLMSHKK*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0036	persistent	direct	high	839	0.999	GCA_009379515.1_01288
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	35907	36626	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	35908	36627	GCA_009379515_1_15_37	GCA_009379515_1_15_37	+	148367	.	COG1118	ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. 	MSIKIQNIHKTFGDFVALGEISIDISTGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYFDSIDVTDIPVQHRGIGFVFQQYALFRHQTVAQNIAFGLTLLPRNTRPSANTIDRRVDELLDLVQLSHTKTRYPHELSGGQRQRVALARALATEPKLLLLDEPFGALDAKVRKSLRDSLKDIQREIGITSILVTHDQEEAQAISDKIVIMNHGQIEQIGTPSKLFAQPSSDFVVDFLGL*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0037	persistent	direct	high	719	0.999	GCA_009379515.1_01289
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	36668	38086	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	36669	38087	GCA_009379515_1_15_38	GCA_009379515_1_15_38	-	148367	.	PDB:3BH0_A	Helicase-ATPase	MAKAKSSYICQNCGAIYGKWAGQCTDCGEWNTLVEAPNTSLPHHHKSKTTTAPRKTANYAGAVSAVMTLDHVGVTLETRMPTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGDSLSGSALYITGEESLSQVAMRAVRLGLPTDRLRVLAETNVDTICAALTTEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDSRFRMIRAIKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIHTSGMDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPVRLCVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRANAPAANHPQFKNIQIIAVDRLDEAIYQAFEINAG*	rep_hall_hmm	common_virus	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0038	persistent	direct	high	1418	0.999	GCA_009379515.1_01290
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	38384	40216	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	38385	40217	GCA_009379515_1_15_39	GCA_009379515_1_15_39	+	148367	.	COG1274	Phosphoenolpyruvate carboxykinase, GTP-dependent [Energy production and conversion]. 	MTAKITAPDFVRHQALIHWVAEIAALTKPAAIEWCDGSEEENQRLIDLMIKNGTMIKLDEDKHPNSYLAFSDPTDVARVEDRTYICSKEEIDAGATNNWVEPSQMRTKLNDLFDGCMAGRTMYVVPFSMGPLGSHIAHIGIEITDSPYVVVSMRKMARMGKEVYDVLGADGEYVPCVHTVGSPLTEGQKDVAWPCNDDKYIVHFPETREIWSYGSGYGGNALLGKKCLALRIASAMGREQGWLAEHMLILGVTNPQGKKHYIAAAFPSACGKTNFAMLIPPAGYEGWKVETVGDDIAWIKPSEDGKLYAINPEAGFFGVAPGTNTKTNSNCMSTLGSDVIYTNVAVTDDGEVWWEGKTKETPANLTNWKREPHTGAERAAHANARFTVSAKQCPSIDPQWENPEGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAATMGSETTAAATGQQGVVRRDPFAMLPFTGYNMADYFNHWLQMGENLGKKAKAAGNQLPKMFKVNWFRRDTNGDFVWPGFGQNMRVLQWIIERCEGTANAVRTPIGLVPTYDDINWDQSDFTKAQFELVTSQDKDAWIKELESHAELFDKLGERMPTALKAHNAKLKADIEQA*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0039	persistent	direct	high	1832	0.999	GCA_009379515.1_01291
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	40374	43253	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	40375	43254	GCA_009379515_1_15_40	GCA_009379515_1_15_40	-	148367	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MKKHTKSSISTQILKPLSLAISSCILVACSSTGTPAKPVSQTPKPIPQAKPSQQINISSGNTNLGNTKTGADVDVLDVQMLDALEALLQATDMSMVEGDELAIQRYGNLWDRVRRGYRINEMTNARIEAQKSWFYTRQTYLDRLTARASRYLHHTVAEAERRGIPSELALLPIIESSYDPTATSNAAAAGLWQFIPSTGRIYGLNQSATYDGRRDVIESTRAAYDFLTSLYNQFGSWELALAAYNAGPGRVSRAIKANQDQGLPTDYWSLKLPTETMNYVPRFLAVAQIVRSPNTYGINLPAIANHSHFRTVPVNYGVSLSEVATVTGLSVSELRLLNPALLNFTVDEIGPNRIVIPDSLPNQIDNQLASLKGYGFGGDYIATAPAQSITYVVPKSGATANTSSQQELIAANTLPTTIAQVTPNNTIVQEPALSKSEINLIAAEIQKTSPEVPAISPQDGNIQLNAVQTGQSVLDARGETKMLSFADGPKTQAVAQQPIQPVQVAVTPPAQPVQITVVSPTPEPISQPKPQLPPVTASIPVVSSPPVLVPPLPSRPRPEPASRPKPKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQTPSRQSTSTANTNSATHKVSAGESLTAIARKYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKTANTTMANTSSSPSVNKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLVNDAHILIGQRLWLVAGKVKRQPVSAQQTSQATQSTKNNQSTQSTATHRVQSGESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKAESSTPSRLGNTKNNSTRTPANTNIGITENYTVRSGDSLTMLSNRFGVAIGDLATANGLASNANLRIGQTLKVPKLTTTYTVKAGDGLIALARRYGISTQELAKMNNLEPTADLRIGQVLTVPNK*	common_virus_hmm	common_virus	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0040	persistent	direct	high	2879	1.0	GCA_009379515.1_01292
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	43448	44053	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	43449	44054	GCA_009379515_1_15_41	GCA_009379515_1_15_41	-	148367	.	PF13474.6	SnoaL-like domain	MAYSFIDKYIEYKGWFMKYSTRSVLRKAVAASMLTAVIRSAIQLTGRSFGKGASIGLFIGMIGVQSLITTNAYAISEQDVSRYASSMSSAANAQNIAQISRLIDDDAIISLSRGGKTTSLDKEGYLQLLQKSWATSSDYRYRINVADVVVTGNQARAQIVTTETWTQDGKPVTIKTASRATFSQVGNNAVLLRSVSQVTVD*	hhsuite_tools	hypothetical_protein	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0041	persistent	direct	moderate	558	0.921	GCA_009379515.1_01293
GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote	cenote	CDS	44159	45367	GCA_009379515.1	RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515.1_RCKN01000005.1	GCA_009379515.1|RCKN01000005.1	GCA_009379515_1_15	GCA_009379515_1_15@C0	44160	45368	GCA_009379515_1_15_42	GCA_009379515_1_15_42	-	148367	.	COG4536	Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains [Inorganic ion transport and metabolism]. 	MPRPRTQNLANLSFVSIAIFTVSVAAIFIPSTAFAAFELGGTPTNLALLIFFICLSLVVSFLCSISEATLLTMTPSYIDTLEEDNPKGAALLKSVKVDHIEKSISAILTLNTVAHTLGSLGAGAQAVIVFGNAWFGVFSGVMTLIILIGTEIIPKTIGTVYWRRFAMPVAYYVRTINVALLPVIWVTEKISRMLTRGNQEIGFNRHEFLALANQGESLGQMSEMETRIIKNSLALGMINVEDILTPRSVVSAFDENMTVGDVFASYPKLPFSRFPIFDEDLDNATGFILKSDLLIAKANQEIHTPIKQFRRDINFVFAKMKLFDLLDLMLKEQVHIALAVGEFGEVKGLVSLEDVLETLLGLEIVDEFDRVDDMQILARQLMDKRMARLGAKLEEDAPFDEK*	mmseqs_cdd	nonviral_gene	C0	45368.0	0	45368	GCA_009379515.1|RCKN01000005.1@region_1_45368@tool_cenote_CDS_0042	persistent	direct	high	1208	0.999	GCA_009379515.1_01294
GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote	cenote	CDS	1	3509	GCA_009379515.1	RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515.1_RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515_1_4	GCA_009379515_1_4@C0	1	3510	GCA_009379515_1_4_1	GCA_009379515_1_4_1	-	14398	.	PFAM:PF13550.5	tail-protein	MNIYGAKRQKQSSNKPYIQKDTASSTNSYQALYGLSEGEIYGLVDGGKSIRLDGTPIINDNGEPNFPDVSWDFRAGSIDQTHIKGFSSVENEQSVNVELRHDRPYTKAINNKQLSAVAIRLGFNSLREQKGNGDVVGYRIEYAIDVQTDGGAWEMVLNTAVDDKVSQGYQRSHRIDLPKAQQGWSVRVRRLTPNRDSEMVSDTMVVSAVTEIIDAKLRYPCTALLALKYDAQTFSNIAKVAVHVRGMLIQVPTNYDPTARTYDGLWDGTFKLAYTNNPAWVFYDICTAKRYGLGDRLAGKVDKWSLYRLAQYCDEMVDDGKGGKEPRFTVNVYLQKADDAYRVLQNLASVFRALSFWDGTSIVVDADTPKEPVYVFSNANVIGGEFSYTGTRARDRHTIVKCAYDDPDNNFETDYIYVQDEHAIAKYGINQLELNLFGCTSKGQAQRAGIWALKSEQLETETVSFSTGLDGFIPKVGEIIHVQDNSRAGRMQAGRIVATDGRQITLDRMAGKVGDTLMVGDNSAQIVQIDDTVITTDTAIGRAGQVFAISSSDVAPRAYRVMTISQNDDASFSFTALQYEIGKFTATNNIAAIPKKEVSVIKAHVLTPPNSVSITERTRTHQGQAITTLVISWEQVVGAVAYIVEYKKDSNAWQTHKVSSHSLEIDGVYAGAYQAKVRAIDAFDNESLATSSQLTQITGKQGKPPRPINLSVQGVLFGMNLGWNFAKGSGDTNYTEIQVSPDGRSNITTLGTFAYPTNKHEITGLQGNLTQFYRARIVDKLGNVSDWTDWASGTTSANADKVLDMLSGQISQSHLDQSLRTPIGKIGTIESNISGINSKIPSIESNIGVINSKIPSINKIPSIESAVNSVNGNLSTLNSQLATAQNELSTAKSTLQIAVGNITTERNRITAAIFDINALQADKNAKTQEIANLTQTVGSHTSSIRELGVATGDLSQKYNQIKTQADNTNSEITAIKQTQSGQATSVERLGARFDNLSAGGRNLIINSGVVVQNDSYPIRSYPLAPNHGLADGDDVVITIWGQLADSKTAFYAYNSGGWVRLGRFSKISDGVYVLKTQWAVSLGVNTASNTALNIYPFPQSQTGESRIDKIKLERGNIATDWTAAPEDLQEQLTAQLANKASTASVNSLTESLANKEQALSRRIGTVESSV	hallmark_hmm	common_virus	C0	14399.0	0	14399	GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote	cenote	CDS	3518	4111	GCA_009379515.1	RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515.1_RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515_1_4	GCA_009379515_1_4@C0	3519	4112	GCA_009379515_1_4_2	GCA_009379515_1_4_2	-	14398	.	PFAM:PF06805.11	tail-assembly-protein-I	MKTVILHGILAKKFGKSFDLDVKTAKEACHALACQIPAFYEFMMNAEKQGIKFAIFNGEKRTQKTNIGEKQLDDITTASHIHIMPRVAGSGGKTMGWIQVVAGWVLVGVGVVTGNAGLIAAGAGLMLGGVSSLLMPTPNLDPNNEDGNRPNNGFGGAVTTVAQGNPVPILYGEREIGGFIVSAAIYAEDKMVQGVKI*	hallmark_hmm	common_virus	C0	14399.0	0	14399	GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote_CDS_0002	shell	direct	high	593	0.998	GCA_009379515.1_00187
GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote	cenote	CDS	4177	4992	GCA_009379515.1	RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515.1_RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515_1_4	GCA_009379515_1_4@C0	4178	4993	GCA_009379515_1_4_3	GCA_009379515_1_4_3	-	14398	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MGGFLLEKFMRLTKTIKEAIHAHAKICYPAECCGLIIDGQYYPCDNAAPNPAEHFEIDYLNMVEMQEYHGEIQAIVHSHPDGNAEPSEVDRVQMGIHGIDWVICAFGYHADGKEYFDVKCHKPKAYQAPLLGREYHHGVQDCYSLVRDYYNRELDIHLPDFHRSDAWWEHENHEPLYENNFTKAGFIKMQDETDLQKHDVILCRVGRTHHVNHALIYVGDGKLKSETTPDCVGNALILHHPHGSLSVREIYGDNWQRRTAMVVRHERLNNG*	mmseqs_cdd	common_virus	C0	14399.0	0	14399	GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote_CDS_0003	shell	direct	high	815	0.999	GCA_009379515.1_00188
GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote	cenote	CDS	5023	5433	GCA_009379515.1	RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515.1_RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515_1_4	GCA_009379515_1_4@C0	5024	5434	GCA_009379515_1_4_4	GCA_009379515_1_4_4	-	14398	.	PFAM:PF11008.7	lipoprotein	MKSIIALTLLFVLTACSTKPIVNYTETVSLVDNNVTSDRSTIVVRRDMGFMGSSCPVEIYLNGVKYARLQSSQSINIHTTAGTHILSAKFTGRGFCQDRLNETEVTIQKNESKYYRLAMNANGDFHIFPTLSTPIQ*	phrogs_hmm	hypothetical_protein	C0	14399.0	0	14399	GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote_CDS_0004	shell	direct	high	410	0.998	GCA_009379515.1_00189
GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote	cenote	CDS	5494	6162	GCA_009379515.1	RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515.1_RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515_1_4	GCA_009379515_1_4@C0	5495	6163	GCA_009379515_1_4_5	GCA_009379515_1_4_5	-	14398	.	PFAM:PF05100.11	minor-tail-protein-	MSFNTDIQQTTVQGFITLYELDARKLGGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGRASTPKLSIGDKINGIQGAVSALCRLYDDFARAKLTVTHTLQAYLDSHDAQNYRQQEWYIEQKVSENPSLGIVEFELSNPVDFEGQKIPVRQITTYCNEAVCGRYRGEVCGYTGTARFTHDGKPTDDPTLDRCSGLLAHCKLRDNEGSFCGFPAAGLV*	hallmark_hmm	common_virus	C0	14399.0	0	14399	GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote_CDS_0005	shell	direct	high	668	0.999	GCA_009379515.1_00190
GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote	cenote	CDS	6261	6653	GCA_009379515.1	RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515.1_RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515_1_4	GCA_009379515_1_4@C0	6262	6654	GCA_009379515_1_4_6	GCA_009379515_1_4_6	-	14398	.	.	hypothetical protein	MSETTLTELSRTEATVLQSFIAQVDFWKNQHGDKAATIEVIYYPEDDGFEVSNNEPNNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTEFSLSYKNDRYGVRAALASETTDKADDGAEQAEQDK*	.	hypothetical_protein	C0	14399.0	0	14399	GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote_CDS_0006	persistent	direct	high	392	0.997	GCA_009379515.1_00191
GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote	cenote	CDS	6757	7089	GCA_009379515.1	RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515.1_RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515_1_4	GCA_009379515_1_4@C0	6758	7090	GCA_009379515_1_4_7	GCA_009379515_1_4_7	-	14398	.	PFAM:PF05939.12	minor-tail-protein	MKTFTWDISADSSETTALNTTITAFGDGYEQAVSFGINNSRKSWQCSKTDTKAVIDEILSFLLNTKGVEPFTFAPIKGEPAIKVRLDGEISRQKTGGDVWQIGFTLKQVF*	hallmark_hmm	common_virus	C0	14399.0	0	14399	GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote_CDS_0007	shell	direct	high	332	0.997	GCA_009379515.1_00192
GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote	cenote	CDS	7192	10947	GCA_009379515.1	RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515.1_RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515_1_4	GCA_009379515_1_4@C0	7193	10948	GCA_009379515_1_4_8	GCA_009379515_1_4_8	-	14398	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MGYWCLLNRSDWAFLLGEFMLNTYRLDIQVNADSANTALGNLKEHFDKIEQSSGKAGVGIDGFSDKADKASKSSKKAGDEAKKAGDGAKKFGDGAKKAGDDVDGLKRKTDGLKNAFGALKGVMFTAFAVAGVGGIIATADQMQNLASQIRLATDSTEQFHAVQTELRAIANEQRSSFDAVVDLYSNSQRSLSALGKSQQDVINFTRNMTMAMNVGGRSAQAQAAALTQLGQALASGVLRGDEFNSVAEQAPILMDLIAKEMGVTSNAVRELAKDGKITADVVYNAVAKATDSLSAMSAKMPTTVSQALQVIKNEYNYLIDDIMNQNSMMSQNIANALLWVAEHFRTLVSAAAMVGAVWLGIIAKNSALVTSFATLTGTSLANTKASVANAFSVQGQITAYNALSTRLVLLRLTKAHYIDLTKTAIAATAVYARSLVGLATSFDRTTLATKAATLASIGWTKTKRGAIGVGILATRTITGLGGAFMSLGRIITAHPIIAIGAVLASVVVSTHGVTGAINSLSDAFGVVTLMAKDFIGFIGDGFSMAWDTVSAFADNMLAKVGDTTKGSTGAFSNFFATSHGGFVGMLQVAAKTFDLINAAAKAGAKNALHNFVQLGKTTKNIFYGIGNAFVSIIEMMINNAARKIDFLSTKANSMAKVLGIEASIPLIGTVSLGRVQYDNVDFGAVASIADNNTNSAYNYVTQLADKATQATKANASLADSYNSVGSAATNAANATKNASDKTKKTADDITDAINELDALVAKLHHESHQLLNNSLSEMIFETDNKLGKFYEATEAQKQKLKDLAGQKDLYTATKKANDELKSLARTIKLVGKQTPFDELAHDLFDVRHEMSVLNGETKNNLLLWAANAENAKLAYELNQRSSQIKHDAMLSNHASSYQRELLNIDREINQEIQKYAGLKQDGTEHIYEQIKANLQLHATEQKKLATHKAYMQLVFDSRSEEEKRLDILDEQLTILAEQHRLHGTDVSAQSRQLMSELLDLPKPDSSAFDELNFEYETRLNRLGRFMDKQKELYKDNEDALTQIAQEGVAARIAIDEAYQDAKRTLILSQSENIFESLASITKDSLGEQSRLYRAMFAMQQGFAIAQAGIAMQQAISQGLAKGFPEGLADMALAASHGARIVSAIKSVVMPVGQAHDGIMSVPKSGTWNLEKGERVLPRHTAQALDKKLDGMQNGNAGQVINVHVTVNSDGSNVQADTQMGKTMGEAMAKIARQVVIQESKQNGHLDRLYRR*	hallmark_hmm	common_virus	C0	14399.0	0	14399	GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote_CDS_0008	shell	direct	moderate	3699	0.985	GCA_009379515.1_00193
GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote	cenote	CDS	10988	11830	GCA_009379515.1	RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515.1_RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515_1_4	GCA_009379515_1_4@C0	10989	11831	GCA_009379515_1_4_9	GCA_009379515_1_4_9	-	14398	.	PFAM:PF10547.8	P22_AR-protein	MSNISIFNFESTKQVRTAIRNGGDIWFCLPDVANVLEISRSSDLLQVAKPAFVKNETSSKRGALDPAGVHKMYISYESGKKQVTFINEPNLYRVIFRSNKAEAVKFQNWVFDEVLPTIRKTGQYTIAFATKDERKPLVQAVNMLVGETGAIYSNVWKMIHQRFDVDCVDELTNEQVYQAVEYVHGLILQHGKKPVDDVLLYKVLVDSAVYLRDYAQLIKQMRDIRFFDENMGKNMYNFVADNINDIVRLTHDMKLTNKNGRPMFEKNRINYYGGAALIYR*	common_virus_hmm	common_virus	C0	14399.0	0	14399	GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote_CDS_0009	shell	direct	high	842	0.999	GCA_009379515.1_00194
GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote	cenote	CDS	12124	12762	GCA_009379515.1	RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515.1_RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515_1_4	GCA_009379515_1_4@C0	12125	12763	GCA_009379515_1_4_10	GCA_009379515_1_4_10	-	14398	.	.	hypothetical protein	MKKLLKWFGIIFAVILGIGVIAVALETPEQKAEREAQAAEEKAQREAEYVAQIDDKEEVQPVNLGMTPQELGSGIDNIIKEISGVDPQLRSVSTNDNIYSVNLGEDIIWYGDLDKTGNIITSMYNVKISDNVEDRMMALLAFAIAKARTLSPDLPKEQVANSVAEVMSRAMKKFNQSLKPTTETQVIGDYKYIVNIYPDSKSMRFSVVHKDH*	.	hypothetical_protein	C0	14399.0	0	14399	GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote_CDS_0010	shell	direct	high	638	0.998	GCA_009379515.1_00196
GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote	cenote	CDS	12803	13729	GCA_009379515.1	RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515.1_RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515_1_4	GCA_009379515_1_4@C0	12804	13730	GCA_009379515_1_4_11	GCA_009379515_1_4_11	-	14398	.	PFAM:PF05766.11	HNH-endonuclease	MSDFFWLMAFIGFCFVILIVGIGIVVYIFNSISTLIKHKPKSYSEYKELRRKDREIAQENIKKLAGYKERVMAICDKNFVSEDEIAELTNYINTNNLSSKQIDIYAHTAFKKHYAAIVSDNLLTDEEMESLTRVAKFLKPDKQLVKKELEELSRSVSLKKIQSGILPEAYTSAIILRRGEIAHFVIPAQLLEERVISRGYKGGSQGVSIRIAKGITYRVGQNRGKLVSEKGTIPVDSGDFVITNRRLIFTGTKKSFSYDYKKLLAWNVYSDGILLNIDNASSRMLSFSNNIDSDAIHLALAYLVDQNT*	phrogs_hmm	hypothetical_protein	C0	14399.0	0	14399	GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote_CDS_0011	shell	direct	high	926	0.999	GCA_009379515.1_00197
GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote	cenote	CDS	13741	14289	GCA_009379515.1	RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515.1_RCKN01000013.1	GCA_009379515.1|RCKN01000013.1	GCA_009379515_1_4	GCA_009379515_1_4@C0	13742	14290	GCA_009379515_1_4_12	GCA_009379515_1_4_12	-	14398	.	.	hypothetical protein	MKKLLIAGILSLSSLTVSAAQNDVQVDINKFINASNVVENPFHADSALEYRFVNADNLNVRDYPVTGNVVGQLSRGEQVGVYAVSDSWVQISSGYTDSKWVSAAYLCEGAGCFEKSTKNTKNQRTANQSNSGSQPKNTTTKKSSAPKRTYSDGLCPCSGSYNCTGPRGGQYCITSGGNKRYR*	.	hypothetical_protein	C0	14399.0	0	14399	GCA_009379515.1|RCKN01000013.1@region_1_14399@tool_cenote_CDS_0012	shell	direct	high	548	0.998	GCA_009379515.1_00198
GCA_009379515.1|RCKN01000017.1@region_1_2598@tool_cenote	cenote	CDS	1	371	GCA_009379515.1	RCKN01000017.1	GCA_009379515.1|RCKN01000017.1	GCA_009379515.1_RCKN01000017.1	GCA_009379515.1|RCKN01000017.1	GCA_009379515_1_8	GCA_009379515_1_8	1	372	GCA_009379515_1_8_1	GCA_009379515_1_8_1	+	2598	.	PDB:2L25_A	tail-completion-protein	HIEQTLLTHIKSWEHFDDIPLAKENRNFKPPDGIWGRVTILGGVNQVRSISNTPNILQQGTLVIQLFCPQDLGTVAIKQKADSLANHLQTRRFGRLELLAPSIINAGFHDYYQINVSVAWRYY*	hallmark_hmm	common_virus	NaN	.	0	2598	GCA_009379515.1|RCKN01000017.1@region_1_2598@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_009379515.1|RCKN01000017.1@region_1_2598@tool_cenote	cenote	CDS	371	559	GCA_009379515.1	RCKN01000017.1	GCA_009379515.1|RCKN01000017.1	GCA_009379515.1_RCKN01000017.1	GCA_009379515.1|RCKN01000017.1	GCA_009379515_1_8	GCA_009379515_1_8	372	560	GCA_009379515_1_8_2	GCA_009379515_1_8_2	+	2598	.	.	hypothetical protein	MPKNRHRRLLQLYGEINELGAILDAPKPKDIHPHEWILMKDQIYYMRQYYRVLKQRTDDTEN*	.	hypothetical_protein	NaN	.	0	2598	GCA_009379515.1|RCKN01000017.1@region_1_2598@tool_cenote_CDS_0002	shell	direct	high	188	0.995	GCA_009379515.1_00209
GCA_009379515.1|RCKN01000017.1@region_1_2598@tool_cenote	cenote	CDS	563	1471	GCA_009379515.1	RCKN01000017.1	GCA_009379515.1|RCKN01000017.1	GCA_009379515.1_RCKN01000017.1	GCA_009379515.1|RCKN01000017.1	GCA_009379515_1_8	GCA_009379515_1_8	564	1472	GCA_009379515_1_8_3	GCA_009379515_1_8_3	+	2598	.	PDB:5NGJ_B	Tail-tube-protein	MSSGAFVKTAYAKQTGETLPKTGWKTLPNISNGLTVATELTNSEMLSGSRMAKAGMVTSASVQGDIETELMFGAYDELIAAAFWSEWSAGASPNTLSVGATKTQFAIAKDFSDINVNHVFTGCVVSSFGLTVDTSSLIKLKFGMTGLGYQESKTTSFAKTPTAQADTAKASGLSIGEIKVNGTKLDVCVESFSFELDNQTEVQKCLGDNIYGGNILAMLTNITGSMTIAYSQKAHEMISNQMTGTTLSLELPIKFGNSKYVIKIPKFQVSGEIPSPSGTDLVTVDLSYTVVDESPVIEKHTA*	hallmark_hmm	common_virus	NaN	.	0	2598	GCA_009379515.1|RCKN01000017.1@region_1_2598@tool_cenote_CDS_0003	shell	direct	high	908	0.999	GCA_009379515.1_00210
GCA_009379515.1|RCKN01000017.1@region_1_2598@tool_cenote	cenote	CDS	1752	2213	GCA_009379515.1	RCKN01000017.1	GCA_009379515.1|RCKN01000017.1	GCA_009379515.1_RCKN01000017.1	GCA_009379515.1|RCKN01000017.1	GCA_009379515_1_8	GCA_009379515_1_8	1753	2214	GCA_009379515_1_8_4	GCA_009379515_1_8_4	+	2598	.	PFAM:PF08809.10	Tail-assembly-chaperone	MAFDLTLLKKDAKMSAKREIEFDGLELTLEIQASEAFKRAAAEVQKIANTPKKVTKDSLKRGNQDEIGEYEAMLFILGEYCISQWNVTADGEPLAINGDNFLILLDQGFEKDKLTQFITLLFETYASLSQEFEDNKAKLVKKSMTATNGKKSG*	phrogs_hmm	hypothetical_protein	NaN	.	0	2598	GCA_009379515.1|RCKN01000017.1@region_1_2598@tool_cenote_CDS_0004	shell	direct	high	461	0.998	GCA_009379515.1_00212
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	tRNA	38635	38711	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	868	944	tRNA-Pro	tRNA-Pro	+	64033	.	tRNAscan-SE score: 77.8	Pro	NA	tRNAscan-SE	.	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	tRNA	38766	38842	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	999	1075	tRNA-Arg	tRNA-Arg	+	64033	.	tRNAscan-SE score: 84.1	Arg	NA	tRNAscan-SE	.	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote	cenote	tRNA	38861	38936	GCA_009379515.1	RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515.1_RCKN01000010.1	GCA_009379515.1|RCKN01000010.1	GCA_009379515_1_1	GCA_009379515_1_1@C5	1094	1169	tRNA-His	tRNA-His	+	64033	.	tRNAscan-SE score: 67.2	His	NA	tRNAscan-SE	.	C5	26266.0	37768	64034	GCA_009379515.1|RCKN01000010.1@region_37769_64034@tool_cenote_tRNA_0003	.	.	.	.	.	.