core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	1	890	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	1	891	GCA_009379625_1_15_1	GCA_009379625_1_15_1	+	203721	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	PLAKENGLSVTDGVLIGQTLKLPSDAKTANTTMANTSSSPSVNKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQQTSQATQSTKNNQSTQSTATHRVQSGESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKAESSTPSRLGNTKNNSTRTPANTNIGITENYTVRSGDSLTMLSNRFGVAIGDLATANGLASNANLRIGQTLKVPKLTTTYTVKAGDGLIALARRYGISTQELAKMNNLEPTADLRIGQVLTVPNK*	common_virus_hmm	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0001	shell	direct	moderate	794	0.892	GCA_009379625.1_01219
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	1049	2881	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	1050	2882	GCA_009379625_1_15_2	GCA_009379625_1_15_2	-	203721	.	COG1274	Phosphoenolpyruvate carboxykinase, GTP-dependent [Energy production and conversion]. 	MTAKITAPDFVRHQALIHWVAEIAALTKPAAIEWCDGSEEENQRLIDLMIKNGTMIKLNEDKHPNSYLAFSDPTDVARVEDRTYICSKEEIDAGATNNWVEPSQMRTKLNDLFDGCMAGRTMYVVPFSMGPLGSHIAHIGIEITDSPYVVVSMRKMARMGKEVYDVLGADGEYVPCVHTVGSPLTEGQKDVAWPCNDDKYIVHFPETREIWSYGSGYGGNALLGKKCLALRIASAMGREQGWLAEHMLILGVTNPQGKKHYIAAAFPSACGKTNFAMLIPPAGYEGWKVETVGDDIAWIKPSEDGKLYAINPEAGFFGVAPGTNTKTNSNCMSTLGSDVIYTNVAVTDDGEVWWEGKTKETPANLTNWKREPHTGAERAAHANARFTVSAKQCPSIDPQWENPEGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAATMGSETTAAATGQQGVVRRDPFAMLPFTGYNMADYFNHWLQMGENLGKKAKAAGNQLPKMFKVNWFRRDTNGDFVWPGFGQNMRVLQWIIERCEGTANAVRTPIGLVPTYDDINWDQSDFTKAQFELVTSQDKDAWIKELESHAELFDKLGERMPTALKAHNAKLKADIEQA*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0002	persistent	direct	high	1832	0.999	GCA_009379625.1_01220
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	3179	4597	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	3180	4598	GCA_009379625_1_15_3	GCA_009379625_1_15_3	+	203721	.	PDB:3BH0_A	Helicase-ATPase	MAKAKSSYICQNCGAIYGKWAGQCTDCGEWNTLVEAPNTSLPHHHKSKTTTAPRKTANYAGAVSAVMTLDHVGVTLETRMPTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGDSLSGSALYITGEESLSQVAMRAVRLGLPTDRLRVLAETNVDTICAALTTEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDSRFRMIRAIKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIHTSGMDVYVNVVGGVKVMETGSDLAVLIACASSIKEKLLPVRLCVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRANAPAANHPQFKNIQIIAVDRLDEAIYQAFEINAG*	rep_hall_hmm	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0003	persistent	direct	high	1418	0.999	GCA_009379625.1_01221
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	4639	5358	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	4640	5359	GCA_009379625_1_15_4	GCA_009379625_1_15_4	-	203721	.	COG1118	ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. 	MSIKIQNIHKTFGDFVALGEISIDISTGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYFDSIDVTDIPVQHRGIGFVFQQYALFRHQTVAQNIAFGLTLLPRNTRPSANTIDRRVDELLDLVQLSHTKTRYPHELSGGQRQRVALARALATEPKLLLLDEPFGALDAKVRKSLRDSLKDIQREIGITSILVTHDQEEAQAISDKIVIMNHGQIEQIGTPSKLFAQPSSDFVVDFLGL*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0004	persistent	direct	high	719	0.999	GCA_009379625.1_01222
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	5451	6290	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	5452	6291	GCA_009379625_1_15_5	GCA_009379625_1_15_5	-	203721	.	COG4208	ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. 	MSHTSSYSYQKNPATRDKPWVRWSLIGIAVVFMGVMLVVPLVSVFYEALKEGWQAYQAALLEPDALASIKLTLITAAIILPINTIIGVALAYLITRHQFRGKFVITTLLDLPFAVSPVVAGLMFVLVFGANTRLGGYLESMGIQVIFATTGIVLATLFVTFAFIARELIPLMQAQGDSEEQAALTLGANGWQMFWKVTLPNIKWALLYGIILTNARAMGEFGAVSVVSGHIRGETNTVPLMIEIAYNEYAFTLAFALSSLLALLALITLVAQGLMSHEK*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0005	persistent	direct	high	839	0.999	GCA_009379625.1_01223
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	6335	7213	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	6336	7214	GCA_009379625_1_15_6	GCA_009379625_1_15_6	-	203721	.	TIGR02139	sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]	MPNQPIPLKNRARRVMPFFGLSMGISIFALGLLVILPFLMMILTTLQMSFDDIMQTIREPQVFAAIKLSLSMAMLATLTNLIFGTLAAWVLVRYEFWGKSFLNALVDLPFALPTAVTGIALATLYAPNGLFGQWFTHLGILLFNEPIKIAFTPIGIWLALVVVSFPFIVRAVQPVLAELSVEFEEAAAVMGAGRLTTFCRVILPEISPAMLIGAGMMFARATGEYGSVIFIAGNIPMQSEILPLIIVSKLEQFDVAGAACVSLFMLLISLVFLFTMNFIQWKLSARLGAKTN*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0006	persistent	direct	high	878	0.999	GCA_009379625.1_01224
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	7563	8003	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	7564	8004	GCA_009379625_1_15_7	GCA_009379625_1_15_7	+	203721	.	.	hypothetical protein	MMMKNKWMRGLAILVLSLPTVTYAKTAAPKASEAPEVSLTQEEQMAIDFCDFSAYGVMHIAGDHQGGATKSEALTNHDKRMAELKDLIDLDPETATMLDKYWKGAIDRIFQESVQKTDAEKQAFVMGVGESSFYSCLDQVLKTPKN*	.	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0007	persistent	direct	high	440	0.998	GCA_009379625.1_01225
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	8034	9209	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	8035	9210	GCA_009379625_1_15_8	GCA_009379625_1_15_8	+	203721	.	PDB:1OYW_A	ATP-dependent-DNA-helicase	MTETTVKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKVTMLSGDVAQQKRERYLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDAFNLPALERHIDQKFKLNQFEFLDEHK*	common_virus_hmm	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0008	persistent	direct	high	1175	0.999	GCA_009379625.1_01226
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	9223	10398	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	9224	10399	GCA_009379625_1_15_9	GCA_009379625_1_15_9	+	203721	.	COG0635	Coproporphyrinogen III oxidase or related Fe-S oxidoreductase [Coenzyme transport and metabolism]. 	MYPDLLDPAHIPLSLYIHIPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIGGGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTIGINRLSIGVQSFDHNALTVLGRIHNPDQASNAIRAARIAGFDRVNADLMYGLPNQNPSKAVNDIQTAIDAGATHLSWYQLTIEPNTTFYCTPPQLPDEEIMAEIETLGQSVLTKHGFYNYEVSAWHGPNDAPCQHNLNYWQFGDYLAIGAGAHGKLTLKNHPDYQDGIYRYQKSRQPKDYLAFEDAPKMVNFERISDDNLPFEFMMNALRLKDGVSTDVFETRTGLLISTIDNEMLPLQHQGLMVLDPLRIAPTRLGFRYVNYLVSQFI*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0009	persistent	direct	high	1176	1.0	GCA_009379625.1_01227
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	10480	10620	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	10481	10621	GCA_009379625_1_15_10	GCA_009379625_1_15_10	-	203721	.	COG5510	Predicted small secreted protein  [Function unknown]. 	MKKVLVASIAAVVVLTGCNAIKGFGKDVSKAGEAVSDTAQKVEKKI*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0010	persistent	direct	high	140	0.993	GCA_009379625.1_01228
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	10868	11413	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	10869	11414	GCA_009379625_1_15_11	GCA_009379625_1_15_11	+	203721	.	COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]. 	MSQFSDALIHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEEVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQLGFVGDIGQSVGYHKPTSR*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0011	persistent	direct	high	545	0.998	GCA_009379625.1_01229
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	11529	11744	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	11530	11745	GCA_009379625_1_15_12	GCA_009379625_1_15_12	-	203721	.	.	hypothetical protein	MTDSTTSPARQKATNTYRQKALANIALVISHTEPHVLDALNQIMAHKDCSKAMAIKVALVEYANTLSQTSR*	.	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0012	shell	direct	high	215	0.995	GCA_009379625.1_01230
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	12147	12437	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	12148	12438	GCA_009379625_1_15_13	GCA_009379625_1_15_13	-	203721	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MALECLDVHFSGLVADGEEIPLPTNFDAHTQNSQFDGMMWAWVDVDLSKYDVKSHKINITLPNHLIAKIDEKVAAHKSLYKSRSNYLAQLAMADLA*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0013	shell	direct	high	290	0.997	GCA_009379625.1_01231
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	12762	12959	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	12763	12960	GCA_009379625_1_15_14	GCA_009379625_1_15_14	-	203721	.	PFAM:PF16777.4	transcriptional-regulator	MPKIVANPKTRAQIQKDSDARRGVKPIGFKVPIEFAELLDELAKQSGKTKNIIIMEAVELWAKQL*	phrogs_hmm	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0014	persistent	direct	high	197	0.995	GCA_009379625.1_01232
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	13536	13973	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	13537	13974	GCA_009379625_1_15_15	GCA_009379625_1_15_15	+	203721	.	6AF2_A	HIT domain-containing protein	MFQLHPTLAKDTFLVGDFPLSTVRLMNDCQFPWLILVPRVSGIKEIYELSAADQVQFLRESSWVSSQMAKIFGADKMNVAALGNQVLQLHFHHIVRYQNDAAWPNPVWGHEAMPYTQEVLSHMQQTLMMALRGHHQMPFDWKMDV*	hhsuite_tools	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0015	persistent	direct	high	437	0.998	GCA_009379625.1_01233
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	14127	14789	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	14128	14790	GCA_009379625_1_15_16	GCA_009379625_1_15_16	+	203721	.	PRK00043	thiamine phosphate synthase. 	MTLQSIDKVPKLYLLTNDDELTTLLDKLERVFDTGAVSLLQVRRKSTLKLYDLATVYREAEMIVSLANDYDIKVVMNDSLELASHFGTGLHLGQRDGSVRVAREILGDHVVIGRTCHTDLALFKEAKREGATYGAMGTAFASITKPRAKIISKDILKKACELDFPLCVIGGITLENIHQLRDKLNGAAIDYIAVTADIMGHSVDTIADKCLAWQQKLNTW*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0016	persistent	direct	high	662	0.998	GCA_009379625.1_01234
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	14794	18348	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	14795	18349	GCA_009379625_1_15_17	GCA_009379625_1_15_17	+	203721	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MIDTFKPKLDLPTKANFKTTLPLLGGADLSFWLALAAKSEERLIVMIANHQNELNQLDTELSFFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGVLLVSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQAGMNTHHAQKLPSSAKITEFRLLPAREFPLEAGKEMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQVLKAYPRVVINTNHDTAKIGAMESLPPPILPINHQAAKPLSELLSFIKSGQVPILLVAESAGRREIILELLKDKVAVKVVDNYQEFINNLDDFNTDCIALSVAPIERGLWLRDETGGLCIISETQIFGRQVLQTRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATNAIKQGKTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRTEMIDRFGTLPTQTQNLFAVHRIRIRAKALGIAKIDATQTTISIEFRADTPIDGLAIIKLIQSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESTKTA*	common_virus_hmm	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0017	persistent	direct	high	3554	1.0	GCA_009379625.1_01235
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	18345	18614	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	18346	18615	GCA_009379625_1_15_18	GCA_009379625_1_15_18	-	203721	.	.	hypothetical protein	MPMSIPTKVTVGYTQRRLFMVSMTVGLISLSGCQHIQVTKSPIPIIIHSHTKSPSQPKPTPTDTVPTKNRPISPPTQKSNTIFILEDWF*	.	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0018	persistent	ambiguous	low	5	0.019	GCA_009379625.1_01235
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	18614	19876	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	18615	19877	GCA_009379625_1_15_19	GCA_009379625_1_15_19	-	203721	.	TIGR02800	tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MKSPITKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLSLAGLGTTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTVNGSIITPTFSPDGLSIAYSVQTKNNLPIIYIVSVSGGTPKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGTRHQSLYRYDFGTTHSTQIASYATNPRLSPDGSKLVYLSGGQIIIANTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRTIPTSGTVRDPIWSK*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0019	persistent	direct	high	1262	0.999	GCA_009379625.1_01236
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	19893	20693	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	19894	20694	GCA_009379625_1_15_20	GCA_009379625_1_15_20	-	203721	.	4G7X_B	Putative uncharacterized protein, TolA protein	MRLSDNHPTVNFDKSALILPILASVLLHTVIIIAVAAPLITPPTKPNTTIQTALVGQEAFNRVKTALSNHHADQNKPTATNTSSTITANDNDNAFMQAQNQHRYHPQVSTSATTTQAYHPPPNSAPFESNSPNIQNQPTNAHAKLAEYSNHVSDLEQSSHTESTPSRAQINAAITSVKHRIEAIWQRYPKQPNQTITFQVNMNQQGDVTSIQFGGGHPDLRESVEAAVYAAAPFYELGGMRDSIRLQFTTEQLIMDNNQTTNEPNH*	hhsuite_tools	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0020	persistent	direct	high	800	0.999	GCA_009379625.1_01237
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	20724	21158	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	20725	21159	GCA_009379625_1_15_21	GCA_009379625_1_15_21	-	203721	.	TIGR02801	TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MVTSNRFARRQRPLNSDMNVVPYIDVMLVLLVIFIVTAPMLATGIEVSLPKEQTKPITQADKLPVIVSIQADGNLYVSHKNAIDVPITPDKLDTLLRQMHQDNTDLQVMVNADADNAYSRIMQIMALIQNVGITQVSLLSESVQ*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0021	persistent	direct	high	434	0.998	GCA_009379625.1_01238
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	21184	21873	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	21185	21874	GCA_009379625_1_15_22	GCA_009379625_1_15_22	-	203721	.	TIGR02796	TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MNESISLISLVIEASVVVKLVMAILLLLSTISWVLIFHLGTKIGGIAKFDKRFERWFWTDDIDHQLSVVQAESERAGLELIFYTGFYDQNHQDQDSSLSDDKKVQIVERRLRMALGSEQVHLEKGLSTLATIGSVSPYIGLFGTVWGIMNAFIGLGQAESVGLATVAPSIAEALIATALGLFAAIPATMAYNHFATKSNTLYENRSLFCEGLISALVTNLAKKNTASTL*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0022	persistent	direct	high	689	0.999	GCA_009379625.1_01239
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	22149	26321	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	22150	26322	GCA_009379625_1_15_23	GCA_009379625_1_15_23	+	203721	.	PDB:5XDR_A	Replicative-polyprotein	MHSTDNLPVLAKDRHYLNKLKQKMNSTTGDLKTKCKIRYDAIYERSAEQVANRMDSIPKNLSEKLNHDLPVTAEADTLIQAIRDHQVVIIAGETGSGKTTQLPKLAMMAGRGITGQIGHTQPRRLAARSVAMRIAEELGEPLGQTVSFKIRFTEEGGKHSIVKLMTDGILLAELGSDKFLANYDTIIIDEAHERSLNIDFIMGYLKRLLPKRPDLKVIITSATLDTQRFSDYFAANGKPAPVYIVEGRSYPVEVRYHPLTDTIVSSQDDDAFDDIEDNLPRALTAAVNECFEDARTKGHPDQADILIFAATEAEIRELQEVLMLYAPAHTEILPLFARQSYGEQQKIFAPSGKGRRIIIATNVAETALTVPNIRYVIDLGFARISRYNYRSRIQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEEDFNSRPEFTEPEILRTNLASVILQMERLQLGDVNAFDFITPPDLRLVNDGRKLLIELGALDDKSFTKTRAKKGRTQLSSLTKIGQQMAKMPIDPRLARMLVAGDAFDCLADILIIVSALAVQDVRERPINKHAQADQKHALFRKEDSDFLFYLELFAALFDRHSTNDNQALSSNARRNFAKKHYLSYARIREWQKTHRQLSEMMAEMGFEINKQKNHQNDVKIDTKKGVRLSLKSGTSHQKSIKQALVGAKALKNDIDNKTSIHYANIHRALLSALLSFVAHKTDTVGEYLMARSQKARIFPASTLHKKGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPNLLKYHYFEPHWSKKAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDALVANQYGMQMKFLADNANKIKDIERIEDKLRRRDLLVDEESLYQFYDAKIPNHIASRKSFEEFYHDAENKTPNFLHFSDEDVLNEAVDDSREFPESWHLGGVRLPLSYVFDPAADNDGVTVHVPIKALAQVDPVALLWGISGWRYELVLQLLKTLPKEIRRQIVPIPDTCQKIFHQLDASSKMGLLDQLVAALKTLGVQAHAQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARHRKASVQSIAIEQGVHHHFPNHFNFVKNKHTSGIVMQEFSALKADAAQSAVFIATFTEMNAALAEHKKGVLTLIKGHLGAKQKQLTGQIDKAFKLAFAPLGDLEKLKNIVVHATLEACLYDYGPDFDHKPVSQHGDHARAAIAGLITQNNQWLISHLPLDEREFDDCQDLILKNFLLVGQEILRNLKEIYTAWQTARGKLLMLDQEIFGENIEDIEDQLDDLQLANFVYQTDYRHWRQYPRYLQALNIRLDRLQHNLEADLDAVYLLDTHMERLARCVKNPKFAEYRWLVEEYRINLFAQPMKTVQPVSAKRLETLWANLTTQ*	common_virus_hmm	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0023	persistent	direct	high	4172	1.0	GCA_009379625.1_01240
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	26583	28079	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	26584	28080	GCA_009379625_1_15_24	GCA_009379625_1_15_24	+	203721	.	3PIK_A	Cation efflux system protein cusC	MSIKCQLVAIDNIIKPCYDKILNFVYFSTMKMPYFLLLGLLLAQQADADYSLLDAQKQLMSSSSAIQASHALYQADVLQAESLQKLHYPRISLNAHAFVLQQNSSIPLDHIKEQTAQHINTHFDHRFGSAPDGLLDALHDSTQTALDRLPDHQDVKLRHDGITPNITATMPIYTGGLISSSKNIANLQAQRGKFGLQERISLAKLNLIRHYFNVQLQKQLTDTQQNMLSAMQLHVDNAYKLEQQGFISRGQRMQFEVARNRVQRLYQSTQNQHQNSIYELAVLLGLPHIEPLSTPLFINTQHRPNWQALLKDSQNTPLNQKLKTDTQLADENIALRQSTKKPKIAAVARYTLDDKPDWFAGVAVSYNLFLGIDRDKQIEAAHLQKQAAQLGHEQVNEHITTTMHTAYGEMVLAQKTHALLQQNRQAAKENLRIQTLSFQEGFGTVAGVVDAQSALSQIDSETALNAYRYLLALATLLHYTGTIDDFDDYLSLDDAHKL*	hhsuite_tools	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0024	persistent	direct	high	1496	0.999	GCA_009379625.1_01241
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	28126	29289	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	28127	29290	GCA_009379625_1_15_25	GCA_009379625_1_15_25	+	203721	.	COG1566	Multidrug resistance efflux pump [Defense mechanisms]. 	MTDKTDDVKPDTDGNHPKKQKPHTQAKSKPRPLALFLLLALIGSVLLVIIFGLIQSYGTPQNLPTANAIGSTNEPPKGVIAHLRQKITGPATFSIQGRVEGETVNISTKLPSRVAAIYVKEGQAVRAGEPLVQLISPEIDAKKQQAAAMLQSALAFQSSTDRGTRQENVDTLYANWQSAKAQATLAEESYRRGEYLYQEGVISRQRRDEMRAAKQSSAQIAQAAQQQYLKAQRGRTDELKSSADAQVQIARAAVAEADALDAETMLYAPIDGTVSKIYIQSSELVMPAVPVMSLLDNHPTITISVQENQYSHVHALPKLTGFIPALNKTADFKIVHTDDEGEFATIKNTRQTGGYDIHSFKTKLEPITPIEGLKVGMSVIFDITVLP*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0025	persistent	direct	high	1163	0.999	GCA_009379625.1_01242
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	29317	30495	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	29318	30496	GCA_009379625_1_15_26	GCA_009379625_1_15_26	+	203721	.	PF12698.7	ABC-2 family transporter protein	MIVRFIRAFCQAFLRELNRLSCNRFDLAMVMIAPLVIIVLFGAMFYHGKAHHLPVALVDEDNSELSHLIYQHIHHNETIKTVLILDNVQDAHHAINRLDVGGYIHIPKDAQNHLVRGENTGIHIAYNQSFFSIGSAISSALSKSTKGGIAKFIQTKHLTGVLPHLSGNMPHVKISVLFNPNLSYEFFLEPFLVAAVLHLLLCCLVAHAIGQEFHEHSVHEWLCHSPFGALFGKISVYVLIISLWHGLWQAWLIGVRGWFVAGSLFVLIIGQLLFYLAYALFGAMVVLKTQNINKSYGILAVYGGSSMSFAGVTLPLNNAPSFTQFWSQIIPFTPFARLQVEQWVIGSPFIITLAHLNSLLIFVLIFGIGSLLLLRRINKTLIATPNSSKDDS*	hhsuite_tools	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0026	persistent	direct	high	1178	0.999	GCA_009379625.1_01243
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	30495	31595	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	30496	31596	GCA_009379625_1_15_27	GCA_009379625_1_15_27	+	203721	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MRRFIKQYLTIWLDIIKDRSIFLTMVLSVVFYGFFYPFAYQAQRPADLPIVIVDEEQSPLTQAIIHTTSHTPNIHVLAVVSDFRQAQMLVQSAKADGILLLPNNLSQSIHHGQTGGVGLYLSSAYFLRTQNIGAGLVSSLQATIIQELGQVTQTRHKPMPELIHQSALFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGYRQRLWRASACDFLAIYAVALTIGCLSCFYLFGFVFWWHDYPRGGNFWGMMLGVPIFVSCAIGVALLIASWVADGAKVGVLLIFSSVPLFMLTGLAYPLMAMPKFLQPLAHALPTTQGVQMFIQLNQMGVSIQDVWQKMAYLASVAVLCLGVAFWRLRLVNRSV*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0027	persistent	direct	high	1100	0.999	GCA_009379625.1_01244
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	31921	32040	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	31922	32041	GCA_009379625_1_15_28	GCA_009379625_1_15_28	-	203721	.	PDB:2MXZ_A	L-alanyl-D-glutamate-peptidase-endolysin	MAQASGKLGVNVRWGGAWMVITGKAGTPQEWVKDYRAGG*	common_virus_hmm	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0028	.	unmatched_CDS	none	0	0	.
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	32232	32414	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	32233	32415	GCA_009379625_1_15_29	GCA_009379625_1_15_29	+	203721	.	COG1598	Predicted nuclease of the RNAse H fold, HicB family [Defense mechanisms]. 	MHYPVTLTPDTDGFCVTFRDIPEAISQGDTTDEALDMAQDALMVAMEFYFEDNRAVPMPS*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0029	shell	direct	high	182	0.995	GCA_009379625.1_01245
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	32442	32645	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	32443	32646	GCA_009379625_1_15_30	GCA_009379625_1_15_30	+	203721	.	PFAM:PF15919.4	toxin-antitoxin-system-HicB-like	MPPSVWVKVLLLNEMIAQNVSQAELAKRMGIVPQSLTRLVDLSHTTKIDTLANAFAKLGKQLQVGLV*	phrogs_hmm	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0030	shell	ambiguous	low	20	0.098	GCA_009379625.1_01246
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	32625	33416	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	32626	33417	GCA_009379625_1_15_31	GCA_009379625_1_15_31	-	203721	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MTLTEHTKRLIHAHAKSAYPNECCGLIIDGQFYPCNNIAPNPTEHFEIDPIDMFEMGEKGQIQAIVHSHPDGNAEPSEVDRVQMGIHGIDWVICAFGYHAGGKEYFDVKCHKPKAYQAPLLGREYHHGVQDCYSLVQDYYSRELDIHLPDFHRTDGWWEKEHHLPLYENNFTKAGFIKMQDKNDLQKHDVILCRVGRTHHVNHALIYVGDGKLKSETTPDCVGNALILHHPHGSLSVREIYGDNWQRRTAMVVRHQASNQTNL*	mmseqs_cdd	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0031	shell	direct	high	791	0.999	GCA_009379625.1_01246
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	33533	34246	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	33534	34247	GCA_009379625_1_15_32	GCA_009379625_1_15_32	-	203721	.	COG3600	Uncharacterized phage-associated protein  [Mobilome: prophages, transposons]. 	MMIAILMDAFIVLLLVMMVTMATILPIKQNLLDVLYYSLAYLKSQVIITVLYEIVMIIWLFLSHFEKGVVMIKAPYNPIDVANYIVAEAVKREKPVTHLKLQKLLYYVVAKYAKTYNTILINEDIVKWQYGPVVKSVYHYFKLHGDRIITKPIAYLESAEIFNLKFTDVDANNAQLGNDKRLVDTVGQVLNDTDLLTAYELVERTHKEPAWRNFEPEILQGFEPYYSEDELKAATYD*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0032	shell	direct	high	711	0.996	GCA_009379625.1_01247
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	34387	34587	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	34388	34588	GCA_009379625_1_15_33	GCA_009379625_1_15_33	+	203721	.	PFAM:PF16777.4	transcriptional-regulator	MPKITSTPKTQTQIQKESNARRGVKNKAFTLKLDDIELIKSLSKRLNIPQNQLIMDAVRAYQRQLD*	phrogs_hmm	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0033	shell	direct	high	200	0.995	GCA_009379625.1_01248
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	34584	34931	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	34585	34932	GCA_009379625_1_15_34	GCA_009379625_1_15_34	-	203721	.	PFAM:PF04883.11	tail-component	MGIKWNKKLSIDPIADEIDKTYRKFAINCYNNVKTLSPVDTGRYRNAHHISIGSPSYAETGGGVELVLGIPKHTYPIIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSALGALG*	hallmark_hmm	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0034	persistent	direct	high	347	0.997	GCA_009379625.1_01249
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	34931	35287	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	34932	35288	GCA_009379625_1_15_35	GCA_009379625_1_15_35	-	203721	.	PFAM:PF12206.7	head-closure-Hc1	MGLKAEISTEIAQAFDGDLKDVAKDFTGRRVILSDDDWAVNDTQVLSTINYSGRGVFTGFYAHEIDNKTIMQSDVKLICLQDELTEIPQIDDEINEMKIISISHDPAEVSFTIQLRGF*	phrogs_hmm	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0035	persistent	direct	high	356	0.997	GCA_009379625.1_01250
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	35289	35648	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	35290	35649	GCA_009379625_1_15_36	GCA_009379625_1_15_36	-	203721	.	CDD:cd08053	Head-Tail-Connector-Protein	MITLDDLTDIDKADEQTVVIVNAWLNKHKIRAFDKTPDPIRQAGRYIAKAWLDGDLFATRTEGQVISKSSKAGDVSVSKTYADGEQGQAMSQNEQIALALIEPYLQQPLGMFGLPLVRV*	hallmark_hmm	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0036	shell	direct	high	359	0.997	GCA_009379625.1_01251
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	35689	36276	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	35690	36277	GCA_009379625_1_15_37	GCA_009379625_1_15_37	-	203721	.	cd08822	Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalytic core domain found in a group of proteins with unknown functions.  Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group.  This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.	MADILGRYRAFAIWGKILMNKLKVMIVGQKWLAEQLLARCLKKPNIEVVTVSPPNNTDRLARLATIHQIPIVVHDKTLTANQVPTGVDIILTAHAYCFVQKKARDKARLGAVGYHPSLLPKYKGKNAIQLAFNNGDKVMGGSLYQLDDGWDTGAVLAQSSVTVDSGDTLAILWRDKLAPLGLDLFEQFLNSHLTV*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0037	shell	direct	moderate	534	0.908	GCA_009379625.1_01252
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	36215	37357	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	36216	37358	GCA_009379625_1_15_38	GCA_009379625_1_15_38	-	203721	.	COG2401	ABC-type ATPase fused to a predicted acetyltransferase domain  [General function prediction only]. 	MIINIHHTCTDFDSYRAERVKSLFNVETGADVKITADLPIESEHWQDKDWQLGVIVGRSGTGKTSTGKQIWEGTPIYNPTWQTDQPIIDQIATNDSIDKATAYLSAVGLGTVPAWLRPYQVLSNGEQFRANLAKALADEPNRLIIDEFSSVVDRQIACIGASAFAKAWKRTKGKQAILLTCHYDVLDWLEPDWVYNTDTGEFTVNRGLLWRKPPIAFDIYQTNWRFWELFEPHHYLKMPKMIASTNYVAVVGGELVAHLAVSTLPGLIEARACRLVVMPEWQGAGIGMRFLNAVCQMWLEGNNRYNKSMRTIFHTSHPNLAQALRRDKKWTQISAKLQGGNKLRSQQTMVKASGKNAGSGYGGHFRAVQGFRYLGEDFDE*	mmseqs_cdd	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0038	shell	direct	high	1142	0.999	GCA_009379625.1_01253
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	37354	37524	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	37355	37525	GCA_009379625_1_15_39	GCA_009379625_1_15_39	-	203721	.	.	hypothetical protein	MKQDPICFRWGFSLAKNGFNYKPKFGLVIQCDDEAHQQTVFEQLKQLGYKAKVVVV*	.	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0039	cloud	direct	high	170	0.994	GCA_009379625.1_01254
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	37521	37772	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	37522	37773	GCA_009379625_1_15_40	GCA_009379625_1_15_40	-	203721	.	.	hypothetical protein	MLVYSKQGKKVLGVDGEYRNPEYFEKTEQTDAVTVIGDYPHIELAYQAIGVNVIRLGVDDTPAIDDDSEQTKAKSRRTPKAVV*	.	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0040	shell	direct	high	251	0.996	GCA_009379625.1_01255
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	37774	37980	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	37775	37981	GCA_009379625_1_15_41	GCA_009379625_1_15_41	-	203721	.	PDB:4AN5_F	Major-Capsid-protein	MYQDNTKENLVIGVRAEGAFNLDVLGYSYKDTAGANPNLATLGATANWEKYATSDKNTAGVILNIAEG*	hallmark_hmm	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0041	shell	ambiguous	low	30	0.145	GCA_009379625.1_01256
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	37950	38717	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	37951	38718	GCA_009379625_1_15_42	GCA_009379625_1_15_42	-	203721	.	PDB:4AN5_F	Major-Capsid-protein	MAITTNNDVLIYNELAQTAYLERLQENLAVFNKASNNAILLSDENLQGDFTKESFYKIAGKIEHRDVNSTSVVQAKKIAMAERVGVKVPFKFGPYETTEEAFKRRARSVDEFSLLLGQDYADALMAGYWKYATAALQGAVGSNSSMLVTAKLSEHGRKVITQGMRKFGDKFSNLSLLVMDAASYFDIVDGAITDKLYQEASTVVYGGAPGTMGIPVLVTDQAKKDTILAYNKGQFVSEIANYLRLECIKTIPKKT*	hallmark_hmm	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0042	shell	direct	high	767	0.999	GCA_009379625.1_01256
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	38721	39473	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	38722	39474	GCA_009379625_1_15_43	GCA_009379625_1_15_43	-	203721	.	PFAM:PF06810.10	minor-structural-protein-	MQLKTDENGNVVVQDGKPVYMYDDGQEIAFDAMQNMAKISQLNAEAKQHREAKEKAETLLKAFDGLNADDAKKALETVKNLDDKRLIDAGEVEKVKAEAKKAFDEQLAEKDAQINKIKQEYNNAVIGGAFARSSFIKDKTLLPSDIVQSSFGSHFTMENGKIVANLGGNPIYSRKNPGELADFDEALETIISQYPHKDSILRGSGASGAGVKHPLAQAGTTNLKRSQMSLEQKSAFIKEHGQTAYLNLGA*	hallmark_hmm	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0043	shell	direct	high	752	0.999	GCA_009379625.1_01257
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	39546	40508	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	39547	40509	GCA_009379625_1_15_44	GCA_009379625_1_15_44	-	203721	.	PFAM:PF06152.10	minor-capsid-protein	MKHLINLERFKVHLANKFKTTLNEIDEFLQLVVFRHEISELNYKEFELLIGESKQKLLGFLAGYALELTQDWQELYDYSYTLETKMIDDDKPDTLNMNEPQFDADSPIKLSAQVGVTLNQILAKFGDEQSTKISNAISYAYANGLPNQELVRIIRGTRKNRYQDGILQITTRHAKTIAHTGTAIVANQAKQQFIHDNKDIIKGIKVIATLDLRTSGICRHLDGEIMPIDKAVYPPYHYNCRTSFEIVYDGYQTPKQRASMDGVVKNQTYYEWLKNQPKAYQVEVLGKKKAKLFQESSVDEFKEFDKNLRPMTLDEIKAQL*	hallmark_hmm	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0044	shell	direct	high	962	0.999	GCA_009379625.1_01258
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	40811	41179	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	40812	41180	GCA_009379625_1_15_45	GCA_009379625_1_15_45	-	203721	.	.	hypothetical protein	MNEFIIPNSNSVSNDFNYSRTDLDAQEQQIAEFIKKGGKVINLDNSEQPKKKSAKKRDFNNQRINSKMHLVLCYLKRSGKRMTGLQIQEKFGISATTLGSQTRLLNAQASKQYNQNSNPSRK*	.	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0045	shell	direct	high	368	0.997	GCA_009379625.1_01259
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	41577	42281	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	41578	42282	GCA_009379625_1_15_46	GCA_009379625_1_15_46	+	203721	.	PDB:2FJR_A	Repressor-protein-CI	MQDFSIRLNQAMSAKNLSLRDLSEKTGINYEMIRRYSKGQAKPRNDKMKLLAQCLGVPITWLDYGEGEMTKNNDKLTPITEWDDSTPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMGRRTLSNLGVMPINAYAVTACDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWRVSRLERW*	common_virus_hmm	common_virus	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0046	shell	direct	high	704	0.999	GCA_009379625.1_01260
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	42333	43229	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	42334	43230	GCA_009379625_1_15_47	GCA_009379625_1_15_47	+	203721	.	PF14337.6	Domain of unknown function (DUF4393)	MTAETFHLIPAITGAVSGAASVGLLNGPLQTLQDIWFVVYGHKWHYKVESIKAQQAMNIQAMQNNIQTGIEKIPANALKDPNVAIIGPALEASRFHMNEENIREMFANLIVSAMDERKDGQVHHAFVEIIKSLSPLDAKNLEYLSQSGDAPIVNIVKEASYGFHMLHQHVFLGNRQVLDPNLITPSIDNLARLKLIDVTYTEHLTHEPVYDPFYHSALYQEKVSALGKELKLRRLDISKLQDLTRPVELDGKVLNKDERTEQIELINKELESKIEIQKGIIKLTAFGKNFLSVCSPTT*	hhsuite_tools	nonviral_gene	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0047	shell	direct	high	896	0.999	GCA_009379625.1_01261
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	43247	43498	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	43248	43499	GCA_009379625_1_15_48	GCA_009379625_1_15_48	-	203721	.	.	hypothetical protein	MRWVFYLKDDNMALAINIVLGANTVHFSRNIQKATQNAKKYLQGFALLAYMQAADKDKSVQDFLIIDPNPMTDEQKKPLLSAL*	.	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0048	shell	direct	moderate	219	0.869	GCA_009379625.1_01262
GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote	cenote	CDS	43527	43811	GCA_009379625.1	NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625.1_NXDJ01000004.1	GCA_009379625.1|NXDJ01000004.1	GCA_009379625_1_15	GCA_009379625_1_15@C0	43528	43812	GCA_009379625_1_15_49	GCA_009379625_1_15_49	-	203721	.	.	hypothetical protein	MYNLSTQVQRFELIDIDQVANLANSVQNGAISATVGTLFVGVGVLPALVALSIGAGLPNRTKDAYVCHIEFDDGKSAILQLSKHKYQQFLKHIA*	.	hypothetical_protein	C0	43812	0	43812	GCA_009379625.1|NXDJ01000004.1@region_1_43812@tool_cenote_CDS_0049	shell	direct	high	284	0.996	GCA_009379625.1_01263