core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_009379655.1|RCKT01000024.1@region_1_1938@tool_cenote	cenote	CDS	1	1485	GCA_009379655.1	RCKT01000024.1	GCA_009379655.1|RCKT01000024.1	GCA_009379655.1_RCKT01000024.1	GCA_009379655.1|RCKT01000024.1	GCA_009379655_1_16	GCA_009379655_1_16	2	1486	GCA_009379655_1_16_1	GCA_009379655_1_16_1	-	1938	.	PFAM:PF13550.5	tail-protein	MNIYGAKRQKQSSNKPYIQKDTASSTNSYQALYGLSEGEIYGLVDGGKSIRLDGTPIINDNGEPNFPDVSWDFRAGSIDQTHIKGFSSVENEQSVNVELRHDRPYTKAINNKQLSAVAIRLGFNSLREQKGNGDVVGYRIEYAIDVQTDGGAWEMVLNTAVDDKVSQGYQRSHRIDLPKAQQGWSVRVRRLTPNRDSEMVSDTMVVSAVTEIIDAKLRYPCTALLALKYDAQTFSNIAKVAVHVRGMLIQVPTNYDPTARTYDGLWDGTFKLAYTNNPAWVFYDICTAKRYGLGDRLAGKVDKWSLYRLAQYCDEMVDDGKGGKEPRFTVNVYLQKADDAYRVLQNLASVFRALSFWDGTSIVVDADTPKEPVYVFSNANVIGGEFSYTGTRARDRHTIVKCAYDDPDNNFETDYIYVQDEHAIAKYGINQLELNLFGCTSKGQAQRAGIWALKSEQLETETVSFSTGLDGFIPKVGEIIHVQDNHRAGRMQAGR	hallmark_hmm	common_virus	NaN	.	0	1938	GCA_009379655.1|RCKT01000024.1@region_1_1938@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_009379655.1|RCKT01000024.1@region_1_1938@tool_cenote	cenote	CDS	1494	1937	GCA_009379655.1	RCKT01000024.1	GCA_009379655.1|RCKT01000024.1	GCA_009379655.1_RCKT01000024.1	GCA_009379655.1|RCKT01000024.1	GCA_009379655_1_16	GCA_009379655_1_16	1495	1938	GCA_009379655_1_16_2	GCA_009379655_1_16_2	-	1938	.	PFAM:PF06805.11	tail-assembly-protein-I	IKFAIFNGEKRTQKTNIGEKQLDDITTASHIHIMPRVAGSGGKTMGWIQVVAGWVLVGVGVVTGNAGLIAAGAGLMLGGVSSLLMPTPNLDPNNEDGNRPNNGFGGAVTTVAQGNPVPILYGEREIGGFIVSAAIYAEDKMVQGVKI*	hallmark_hmm	common_virus	NaN	.	0	1938	GCA_009379655.1|RCKT01000024.1@region_1_1938@tool_cenote_CDS_0002	shell	direct	moderate	345	0.777	GCA_009379655.1_00587
GCA_009379655.1|RCKT01000026.1@region_1_1624@tool_cenote	cenote	CDS	1	1623	GCA_009379655.1	RCKT01000026.1	GCA_009379655.1|RCKT01000026.1	GCA_009379655.1_RCKT01000026.1	GCA_009379655.1|RCKT01000026.1	GCA_009379655_1_18	GCA_009379655_1_18	2	1624	GCA_009379655_1_18_1	GCA_009379655_1_18_1	-	1624	.	PFAM:PF13550.5	tail-protein	KSEQLETETVSFSTGLDGFIPKVGEIIHVQDNHRAGRMQAGRIVATDGRQITLDRMAGKVGDTLMVGDNSAQIVQIDDTVITTDTAIGRAGQVFAISSSDVAPRAYRVMTISQNDDASFSFTALQYEIGKFTATNNIAAIPKKEVSVIKAHVLTPPNSVGITERTRTHQGQAITTLVISWEQVVGAVAYIVEYKKDSNAWQTHKVSSHSLEIDGVYAGVYQAKVRAIDAFDNESLATSSQLTQITGKQGKPPRPINLSVQGVLFGMNLGWNFAKGSGDTNFTEIEVSPDGRSNIATLGTFAYPTNKHEITGLQGNLTQFYRARIVDKLGNTSDWTDWASGTTSANADKVLDMLSGQISQSHLDQSLRTPIGKIGTIESNISKINVDLPELNQSIADAQSTLNTAVASIDIEKKRLSSAIVDINTLKQSNNAKTQEIANLTQTVSGHTSQVRELGVTTGDLSQKYSQVKTQANNATSEITAIKQTQGGQATSVERIRSEMANKASTASVNSLTESLANKEQALSRRIRTVESTASGNTSSIN	hallmark_hmm	common_virus	NaN	.	0	1624	GCA_009379655.1|RCKT01000026.1@region_1_1624@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_009379655.1|RCKT01000027.1@region_1_1413@tool_cenote	cenote	CDS	1	1412	GCA_009379655.1	RCKT01000027.1	GCA_009379655.1|RCKT01000027.1	GCA_009379655.1_RCKT01000027.1	GCA_009379655.1|RCKT01000027.1	GCA_009379655_1_19	GCA_009379655_1_19	1	1413	GCA_009379655_1_19_1	GCA_009379655_1_19_1	-	1413	.	PFAM:PF05939.12	minor-tail-protein	FTWKMNMGASASVHHAVSKTQFGDGYAQRVSHGINNQRMDWSGSKTGDWQTVILPIKTFLDEHKGVIPFLWTNPHGQTKKYVCENYEISQKKGNFWEISLKFEQSNSDGSSVPLLDFSNQNSGTSTPNLPQSALDDINKKIQDEIERSTQKDDAHDKAIQSLNTSKTSLSKSIDEIKEQLAGVSSAPASVTWDSITGKPSSFNPSSHSHTISDISGLQSLLNAKANSNHSHSWNSITDKPQSFTPSSHVHQASDIADLHTILSKYATKDEIPQINTDGLTIDTSNLATKTSVETLANKVTEASEALKSETKLRANSIAAIDSKIDDEIASLKRTKADLSHTHTMSEVTDLSAELERYALKTELNDISVDTSHLATKSSVNELSEQIATKADQSHRHTITEVSGLQGILNNKLNSNASARSAQKLTTPRRINGIAFDGTQDITLPTPTANVSWSAISNKPANFTPSAHRHAI	hallmark_hmm	common_virus	NaN	.	0	1413	GCA_009379655.1|RCKT01000027.1@region_1_1413@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	1	135	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	2	136	GCA_009379655_1_22_1	GCA_009379655_1_22_1	-	294591	.	PFAM:PF05939.12	minor-tail-protein	MQTFTWKMNMGASASVHHAVSKTQFGDGYAQRVSHGINNQRMDWS	hallmark_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	192	446	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	193	447	GCA_009379655_1_22_2	GCA_009379655_1_22_2	-	294591	.	.	hypothetical protein	MNEKQMLEFAKDIASPFAKELHARSLANVGTILYLSKKGIIDLNDYLNFMNELKEGLMQSDDYEQETKEAIQAEFDFYRERLIG*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0002	shell	direct	high	254	0.996	GCA_009379655.1_00594
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	449	4123	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	450	4124	GCA_009379655_1_22_3	GCA_009379655_1_22_3	-	294591	.	PFAM:PF10145.8	minor-tail-protein	MAVVSKLQIVLEATTTAFDRGLKQASENLNAFAKKNEEIHNRLERFNRKHEQALSAMRGIGAASAAAMAAVGYGIKSSVNEAMKFESALAEVKKVVDFDSPEGLVNMRRELENLSTQVPIAFDGLAKIAAAAGQSGIAADEIVKFTEAAAKMGTAFDISAEEAGQAMAEMRTAFKMSQLEVETLADKINYLGNNSPNAAANIMQVVQTIGPLGEIAGVSSDQIAAMAASLTGVKPDVAATGLKNMMIQLTKGDSLAKSAKTAFTQLGLSYTNVAKGMQKDSVGTINKVLEAIKKLPAEAQTASINAIFGAEALPVVSQLVTGTETLTKHLQAMGDATKYAGSMNAEAANINATAAAQMEMFKNATQNAKAAIGEAFIPALAGIVEKLTPTINSIKEFAQENPKLVSTITAVTGVILSLGVAIGAIGLAVPVVTTAFGGLSDIGKLLGNAISGISLPMLGIGVAIAGLIVIGVLLYKNWDTIKAKATEIFNNLPEPIKTAIDNIKSYFSSMKAVFDVVLDTAKAFWHGFSTIPLAAFEVIKASVSFGMNAILSIIKAVLTGIAAAFNFGFDIAKAIVETALGVIKGIINGDMNAVVNAIKNGLKTAGNAFNQLRTDVVNTIKQLGTDLYQAGKDAVDGLVKGINDKISAAVAKSKELASGVKNAVTNFFDIRSPSRVMMQVGYWIADGLAVGIKKGAAKTKKEAKKMAEDIKKATDDERINIAKSVYKLQQELKGNPYADFLTDIAFGKYGDAKKFLKSKDYTQISQLKEAEKRLQNIISINDELDGLRESVRSFGMDEIERLEHAYKTSQKYYSATEDDMLEHIGLLKEIQNLEFGNKIDEIREQRNLIGKTEVEQLEYKLKYYREYRHISDVLKKAMIDEIKLKEFETLQSEKKLDLEKKLHMLRGGTETSWLLKQSQFTEEQKKQIEQLTKQIELTEQLAELREKLKDKSVFDVKDAVKSGSFGEGLGGVLEGIAGLGNINAGAIENYAKIEEVFAEEKTKLKQAYEDGLILESEYYEQSKILAEQYADAKEKLLLNATQSTLGGITAITKSAFGEQSKLYRTILAFEKGVAISRSIIAIKTAMAMASANPFPANLGAMATIASQTANIISAIKSVVMPVGQAHDGIMSVPKSGTWNLEKGERVLPRHTAKALDDKLDKIGTGDRPVNVVINNYSGEKTDVQQMPNGDMMVTIGKMISHTVDAKLNQRFIQARRQGGELYGR*	hallmark_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0003	shell	direct	high	3674	1.0	GCA_009379655.1_00595
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	4182	5018	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	4183	5019	GCA_009379655_1_22_4	GCA_009379655_1_22_4	-	294591	.	.	hypothetical protein	MAQESPTTESLFDFLYLDSIKIRSFYAQLTGFGSLASIKANNALNSSLASEGALGVNAMAKIDAKVNYATGENQSSEKTYDATPTLPREMIDKLDELGFISRELGENSAGNLVLLNGVLSITDIETLQNLLEPTMHFATEEEYKQLYGDRKRQAVKKKLEENKPVVQLIKAIPYALEARLKVGEDMVWMTLNRGEMVGNPHDINLKHGKVLFGEYYVLGVLDAIPNDDMNIDMTTGSFGDVILELSQSLKETMGRNTSSYGITPIAIFRVIRTNQQAK*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0004	shell	direct	high	836	0.999	GCA_009379655.1_00596
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	4981	5163	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	4982	5164	GCA_009379655_1_22_5	GCA_009379655_1_22_5	-	294591	.	.	hypothetical protein	MQDNAKKSDATHHSAQLLRDMFSCLNQAMSRETEKFHQEQKKVKEEINHGARITNHRISL*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0005	shell	direct	high	182	0.995	GCA_009379655.1_00597
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	5323	6201	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	5324	6202	GCA_009379655_1_22_6	GCA_009379655_1_22_6	-	294591	.	PFAM:PF10547.8	P22_AR-protein	MSNISIFNFESTKQVRTAIRNGGDIWFCLPDVANILAISNANPSRFNLSEAGVHKMYISYESGKKQVTFINEPNLYRVIFRSNKAEAVKFQNWVFDEVLPAIRKTGRYVAKSTVSDRTPLRQAVSMLVSRCGLDYGTAYTMVNQYMETQHIDEIDLADLPRAIAYTHSLMIKPDAKEQGEFQITCHQATNQAMNYLYGLHAEIKRLGGVAPSLDIDEDEIARAIITRMVQGKRFMVNLDYWNTKPNVSIIDQKSWVVQSDDIAKIIADPAGVPKDVLPSIIQAALKRSGLTV*	common_virus_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0006	shell	direct	high	878	0.999	GCA_009379655.1_00598
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	6493	7131	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	6494	7132	GCA_009379655_1_22_7	GCA_009379655_1_22_7	-	294591	.	.	hypothetical protein	MKKLLKWFGIIFAVFLGIGALAVALETPEQKAEREAQAAEEKAQREAEYAAQIDDKEEVQPVNLGMTPQELGSGIDNIIKEISGVDPQLRSVSTNDNIYSVNLGEDIIWYGDLDKTGNIITSMYNVKISDNVEDRMMALLAFAIAKARTLSPDLPKEQVANSVAEVMSRAMKKFNQSLKPTTETQVIGDYKYIVNIYPDSKSMRFSVVHKDH*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0007	shell	direct	high	638	0.998	GCA_009379655.1_00600
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	7379	7651	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	7380	7652	GCA_009379655_1_22_8	GCA_009379655_1_22_8	-	294591	.	PFAM:PF06223.11	tail-protein	MTVAELASKMSYVEFLEWQAFHDIDPIGGYRGDIQAAMIAASMGGGKLSDYMIIDPNPMTDEQRQEYEQQREAQKARIQVAEMIAMFNSM*	phrogs_hmm	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0008	shell	direct	high	272	0.996	GCA_009379655.1_00601
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	7702	8031	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	7703	8032	GCA_009379655_1_22_9	GCA_009379655_1_22_9	-	294591	.	CDD:pfam16459	Tail-assembly-chaperone	MSNLKNDLLKALSNLGTPTAYDIDGIGTVYIKKLTVEEQGKLMHDKGDDVKSSLRLVTFSVCDEEGKRVFAENDIKDLGKMHADTLTKLIEAIREVNGFDAKVDDLKKD*	hallmark_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0009	shell	direct	high	329	0.997	GCA_009379655.1_00602
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	8080	8526	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	8081	8527	GCA_009379655_1_22_10	GCA_009379655_1_22_10	-	294591	.	PFAM:PF16461.4	tail-tube-protein	MAETNTVENAKDSFYQLFVSATNTSSSFKKIERLTSCGVPSEAKVLDDITATDDRRQVNAVVDYKENSEVEFEYVLLPEDETHKLLQKSFESGRELYFQLKFMEATSESRQFKGIIAELTTDAEDTKKKLRKKGRITITGDTTKELTA*	hallmark_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0010	shell	direct	high	446	0.998	GCA_009379655.1_00603
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	8536	8883	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	8537	8884	GCA_009379655_1_22_11	GCA_009379655_1_22_11	-	294591	.	PFAM:PF05657.10	tail-component	MIASKRIFGLLGELVNDRVYPLFVPETADSTPPFMVYTLVSNVPDNTLDGATGHEWVGVQIDIYAADYDETIALAQEAVKRLNTIKPSEYGGVVYVHDDGLYRAIIEYEFWQTII*	hallmark_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0011	shell	direct	high	347	0.997	GCA_009379655.1_00604
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	8883	9425	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	8884	9426	GCA_009379655_1_22_12	GCA_009379655_1_22_12	-	294591	.	PFAM:PF04883.11	tail-component	MKLIGAEELGKKLKQAREEITNKQAGSALYSSLMYASLPMYKYVRSQAPMTKAPYRRYMSYGQGDGFYYDKNGKKRRRRAKRGTGKYEIQESGLYHKSIKRRRLTRGESANLDGAAIAIYVAEGSGKTHGSAYYWFFNEYGTKYQAARPIFRPAFNSGAEDAADRFKNKLGERIDKIMGG*	hallmark_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0012	shell	direct	high	542	0.998	GCA_009379655.1_00605
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	9422	9748	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	9423	9749	GCA_009379655_1_22_13	GCA_009379655_1_22_13	-	294591	.	PDB:2KZ4_A	Head-tail-adaptor	MQAGKLKDRVSFMQHLELRSATGAPKRTWSVIDTVWGQFTPVSAKDVIAGKAAGVEILARLKIRYRDDIKRNMRVVCRGKTYDIIGEPLADNKSGREYLTLLLQGAEQ*	hallmark_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0013	shell	direct	high	326	0.997	GCA_009379655.1_00606
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	9748	10011	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	9749	10012	GCA_009379655_1_22_14	GCA_009379655_1_22_14	-	294591	.	PFAM:3JVO_G	Head-Tail-Connector-protein	MVKHQCRIDHDDEDDLLMHYLNAALIHASNYIDGLLDESNLAVQQAVLLLVGHWYDNREAVNNDYQTPQSIPFGFEALLQPYRNLGV*	hallmark_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0014	shell	direct	high	263	0.996	GCA_009379655.1_00607
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	10013	10258	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	10014	10259	GCA_009379655_1_22_15	GCA_009379655_1_22_15	-	294591	.	.	hypothetical protein	MVVIMEYEVLKQHYGDKQYYEGDIRQLDDDFTAKRLIEFGLIGKAELNKKVQSKAKKVPSNKAEPVLENKGDDSDDTEDNA*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0015	shell	direct	moderate	234	0.951	GCA_009379655.1_00608
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	10478	11659	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	10479	11660	GCA_009379655_1_22_16	GCA_009379655_1_22_16	-	294591	.	PDB:3QPR_G	Major-Capsid-Protein	MSDMTKQLATELAKATDYVKGLGEELTGRLEKGENNLSTLKGDVDEALKSMGDVKARLDAIEQKQARRAQNQEPEKSLGERLFESDAFKQFADNPTAGNRAKLNIKATITSATTDTSGAAGALVQTQRLGGIVAPPDQRLRVRDLLMKGTTDSNALEYVRETGFTNSAAAQQNEGDKKAQSHIKFDTQSVSVRTLAHYVKASRQILDDASALASYINGRLIYGLKLVEDRQLLNGDGENGNLKGIIPQATAFADKATLSTYTIIDQLRLAQLQAVLAEYPASGIVLNPIDWAKIELEKDADNRHIIGLPQGTANRTLWGVPVVETTAMGTGKFLTGAFNLGAQIFDRQQAAIAVATENEDDFVRNLVTILCEERLALAVYRPEAFIYGDLVAK*	hallmark_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0016	shell	direct	high	1181	0.999	GCA_009379655.1_00609
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	11652	12302	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	11653	12303	GCA_009379655_1_22_17	GCA_009379655_1_22_17	-	294591	.	PFAM:PF04586.16	prohead-serine-protease	MKTKSINFEPSIVKDDGFFSGYCNVFDVVDSYGDSVQKGAFVKSLAKFETRSKMPPILWQHDRAQPIGVWTALKEDEHGLYGEGKLLIDDVPKAREAHALIKAGVIDGLSIGYRVEQADYDNTKEVLLLKELDLFEISVVTFPANDASTVTVVKSALAQGQLPTLSEFEKFLRDAGFSKSQATAIASHGLRQLLGEPAELKDALQIIKSITGDINV*	hallmark_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0017	shell	direct	high	650	0.998	GCA_009379655.1_00610
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	12283	13494	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	12284	13495	GCA_009379655_1_22_18	GCA_009379655_1_22_18	-	294591	.	PDB:8CEZ_K	Portal-Protein	MNDENWWSRFYARLFGGGKRLDKGSEVAPFNSMHMPSGTAVTAETALKLSAVWACVRLRSQTIASLPLHLKSDSKELATDHHLYRILHDSPNADMTASEFWESVIVSLDLWGNAYVYITRLGGRVVSLDILDPSITVVKRNRDGDISYKVGEDIFGAEDVLHIKGFTMDGLVGLSPIRYQAGVMGAQIDANNAASHTFGNNLKAGGFLQTDNILNSEQRQKLRGNLEYFSKPENAGKYMVLEAGMSVSSSGVKMNPSDAQLLETRYFGIEEICRAFGVPPQLIGHTDKASSWASSLEGMNLGFLTYSLRPTLERIEQAIRKKLLSPSERSQYSPKFSVEGLLRADSQGRANFYTTMLQNGVMTRNEVRALEDLPPMSGGDSLTVQLNLTPLEKLGQDHENQIN*	hallmark_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0018	shell	direct	high	1211	0.999	GCA_009379655.1_00611
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	13487	13807	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	13488	13808	GCA_009379655_1_22_19	GCA_009379655_1_22_19	-	294591	.	PDB:1Z6A_A	Helicase-of-the-snf2-family	MYSCNSKASEYIQEFTNYPRHILEFGNSNSTERGLHPTQKPVDLLEYLIKTYTNKGETVLDFTMGSGSTGVACVNTGRKFIGFELDDYYFGVACDRINRHRVLKDE*	rep_hall_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0019	cloud	direct	high	320	0.997	GCA_009379655.1_00612
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	13800	14249	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	13801	14250	GCA_009379655_1_22_20	GCA_009379655_1_22_20	-	294591	.	PDB:1G60_B	Adenine-specific-DNA-methyltransferase	MDIQLQQGDCLELLKTLPDNSVDMVLTDPPYGVLDFKWDNEIDNEKLWQELKRVIKPNCIIALFGIEPFSTQVRLSNIKNYKYDWYWKKSAVGGFINAKKRPLKTLENIMVFSDGVPRYYPQGLVRLDKKSPERQRGSQREAGEGRCVV*	common_virus_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0020	shell	direct	high	449	0.998	GCA_009379655.1_00613
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	14330	16024	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	14331	16025	GCA_009379655_1_22_21	GCA_009379655_1_22_21	-	294591	.	PFAM:PF03354.14	Large-Terminase	MTYPNVQKALDYIHAVLSGEIIANKYIKLACQKHLDELKNSETNPDYPYFFDPAKAEKVAKFIQLLPHTKGKWASKGEKIALESWQIFACCLPFGWIKRATGFRRYTKILIFVCRKNGKSAIAAGIGNYMFCADGEFGAEVYSGATTEKQAWEVFRPAKIMVERTKALKDFYGIEVNASNMARLADGSRFEPIIGKPGDGSSPSCAIIDEYHEHKNNDLYDTMETGMGAREQPIMLVITTAGSSIGGACHQMVRDAEKMLDGVMDIPDLWAVLYGMDKDDDWTSEIALKKANPNMDISVSAEFLQARQRDAKMSAAKQAIFRTKHLNEWVGAKNAWLNMAKWANGAKRLPLSALTGRPCFIGLDLATKIDMVALILLFPPTADDPNYHVHGRYYLPDVRVLEELDSNTERYRAWDADSLLTLTMGEVVDFDAIKDDLREFYGRFDVQEVAYDPWQATQLAQEMEKEGMVMVELRHTVQNMSEPMKELEALVLQKRLAHGDCPILTWQASNVVATLDKKDNIYPNKERAENKIDGMVALIMALSRAIVHTDTGNVDEFFDNMIIA*	hallmark_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0021	shell	direct	high	1694	0.999	GCA_009379655.1_00614
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	16021	16476	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	16022	16477	GCA_009379655_1_22_22	GCA_009379655_1_22_22	-	294591	.	PFAM:PF05119.11	Small-Terminase	MKGRKPKPTAIKELTGNPGKRALNKNEPKFAQITEIEPPVWMTSTAVTMWCTVMPELLATGVLTVADVHNVEAFCMSYSRWREAEQEVERYGLVIMDDNGKLNKNPALTIINEAKTQMMKFGSLLGLDPSSRTRLTGAANSEPIANPFADL*	hallmark_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0022	shell	direct	high	455	0.998	GCA_009379655.1_00615
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	16582	16926	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	16583	16927	GCA_009379655_1_22_23	GCA_009379655_1_22_23	-	294591	.	PDB:5H0M_A	HNH-endonuclease	MTTPCRARLCKNLVKSRLMKGYCDEHAHLRHGWQHNKSASERGYGSQWKRLRLQVLKRDKHLCQMCKADARYTHATDVDHIIPKAKDGTDNMANLQSLCSSCHKIKTAQDGRGG*	common_virus_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0023	.	unmatched_CDS	none	0	0	.
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	17029	17316	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	17030	17317	GCA_009379655_1_22_24	GCA_009379655_1_22_24	-	294591	.	PFAM:PF06530.11	anti-termination-protein-Q-like	MGKGWLVAVSPTTRGFFVGQIDRGVSELARYCPVSANVFMMFYVWGWSHEKIAVRYLSAIGYRGKSRASRHDVRSALIKAESFLAGLLHKLYSFT*	phrogs_hmm	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0024	.	unmatched_CDS	none	0	0	.
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	17540	17932	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	17541	17933	GCA_009379655_1_22_25	GCA_009379655_1_22_25	-	294591	.	PFAM:PF06530.11	anti-termination-protein-Q-like	MSNEKLEAYKKEFVEWGRWVRCDPNRLSYPSPWFEMIMRDNIPCSSVSPNIIDDRAIAIDKAVSRLSRYSVLQYQIFVLYFAKNIPEYKIAKMADMRVFGKNNSKNARNMVKENLSGAMGYVIAFLENNA*	phrogs_hmm	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0025	shell	direct	high	392	0.997	GCA_009379655.1_00617
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	17932	18174	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	17933	18175	GCA_009379655_1_22_26	GCA_009379655_1_22_26	-	294591	.	PFAM:PF11753.7	nucelotide-kinase	MNELKQTENDAVNHPSHYTSDPSGIECIQITRHRNFNIGNAIKYLWRAGLKDGNSDIQDLQKAVWYIQDEIERLEKLKGV*	common_virus_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0026	shell	direct	high	242	0.996	GCA_009379655.1_00618
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	18171	18509	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	18172	18510	GCA_009379655_1_22_27	GCA_009379655_1_22_27	-	294591	.	PFAM:PF06356.10	Endonuclease	MKYKNKKTQIDGITFDSKKEAERYKLLKSMQDDGLINDLECQPKFILIPSQYFETIGRRERGVDYVADFRYKDNLGQIIVEDVKSAITAKDKVYRIKRKMVKYFHDVEIVEV*	common_virus_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0027	shell	direct	high	338	0.997	GCA_009379655.1_00619
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	18478	18669	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	18479	18670	GCA_009379655_1_22_28	GCA_009379655_1_22_28	-	294591	.	.	hypothetical protein	MRKREPCHRDIWHSITDLDYDDVMVLRSIYYAGLRNDETRRACTVYKIYRDKVREVQKQKNTN*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0028	shell	ambiguous	low	87	0.453	GCA_009379655.1_00619
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	18666	19268	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	18667	19269	GCA_009379655_1_22_29	GCA_009379655_1_22_29	-	294591	.	.	hypothetical protein	MIQIHSPSHLVAVIQGLAIGSFEKRYGAMKTADVVNIFAFVTQDLTPEQLVAGINTMANKGFCPDAALFRRWCLGLPSFSHDDAISDSYRGKSGALGNILKWIAHPKNTVITVAEKQAYDATYHLWQDIKSEHDKWRAENAFKDEYELIVNRFVKDGITCQVYTPPPAIENKPNDEHWPVSKDRQDEIFATLGKITGRLV*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0029	shell	direct	high	602	0.998	GCA_009379655.1_00620
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	19273	20100	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	19274	20101	GCA_009379655_1_22_30	GCA_009379655_1_22_30	-	294591	.	COG3756	Uncharacterized conserved protein YdaU, DUF1376 family [Function unknown]. 	MHYYSHNINDFNNATIHLSVEEECMYHRALAWYYSNELPLPSDKNKIYRYLRATTKKLQKAVDMVLEDFFILEDDGYHQARCDEEIAEYKKKQEVASNAGKASANARKKKAEQDENNQQANDEHHINDRSTAVQQEINDRSTTVQPTNNHKPITNNIYTHTNAREQNFCSLADWQPPPMQEMQSELLRAGVNVTLNASQYQIALQDFKAYYDNQATLGKPLNTDFVRRQKFRQWLSRSDSKKPTNRTDELAAMANNFGENFYSKNANPKLGVTHE*	mmseqs_cdd	nonviral_gene	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0030	shell	direct	high	827	0.999	GCA_009379655.1_00621
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	20100	20504	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	20101	20505	GCA_009379655_1_22_31	GCA_009379655_1_22_31	-	294591	.	.	hypothetical protein	MNEFIIPNFNFVSNAFSKRRTDFDAQEREIAEFIKKGGKVINLNKEQTKKMVCKAHACRQYKNPNAKIRLLLSHLQKTGEHMTSAQIKKQFGIKAAGSAVSRFNQREGKTLIKNKKLRDSTNHIYCVYYAAEVN*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0031	shell	direct	high	404	0.998	GCA_009379655.1_00622
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	20544	20774	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	20545	20775	GCA_009379655_1_22_32	GCA_009379655_1_22_32	-	294591	.	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription]. 	MSKTKNKAVQRLIEFFGSQMKLADALDVEQSAVSGWLNNRFYISRDNADLAESLTNGVVRSEELRPRKKAKTPSSN*	mmseqs_cdd	nonviral_gene	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0032	shell	direct	high	230	0.996	GCA_009379655.1_00623
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	20918	21619	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	20919	21620	GCA_009379655_1_22_33	GCA_009379655_1_22_33	+	294591	.	PDB:2FJR_A	Repressor-protein-CI	MELKNRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRAVELAHLFGVDVHWLISGEGEMTKNNDKLTPITEWDDSTPLDDDEVGIPFYKDIAFACGYGAVNDDVTHETRKLRMGKRTLSNLGVMSENAFAVTARDDSMTPYVQDGDTIYIDTGRKEIKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQIATKQQISDGEFEVIGWVWSVSRLERW*	common_virus_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0033	shell	direct	high	701	0.999	GCA_009379655.1_00624
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	21616	22407	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	21617	22408	GCA_009379655_1_22_34	GCA_009379655_1_22_34	+	294591	.	PF12686.7	Protein of unknown function (DUF3800)	MILLLAANVVGKLVIDFSDYIVYVDESGDHDLLKINSKYPVFVLSFCIFHKKYYNEKIVPSVQDLKFRYFGHDMIVLHEREILKKTGTFANFSDKKQQAFLNDINALMDNTKFMMIACVVRKDKLVQKYIRPFNPYHIALQYGLERIYRLMCEKDQHQKKTFIIFEQRGGKEDEILKNEFLRVCQGANYYKTIFNFEMILAHKQVNSTGLQFADLTARPIGNHCLKPNQPNRAFDVIKSKLCSCGGREFAGSLYADFGLKIFP*	hhsuite_tools	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0034	shell	direct	high	791	0.999	GCA_009379655.1_00625
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	22376	22558	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	22377	22559	GCA_009379655_1_22_35	GCA_009379655_1_22_35	+	294591	.	.	hypothetical protein	MQILGLKYFHKQKALSKSELSADWELLHKPVCNPVHMVIIGYIISQIKQRIVNLRFYIKN*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0035	shell	ambiguous	low	33	0.18	GCA_009379655.1_00625
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	22623	23492	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	22624	23493	GCA_009379655_1_22_36	GCA_009379655_1_22_36	+	294591	.	.	hypothetical protein	MGITIEFYKIYYINNNTGSQTLFNAINSLVGKSHIYDSKDYVRDLHHLQTLPNGRVAGVFRKLRPDNGIKCGEAGTDGRSLGLAANEGLFETNHFVYFSKYDIIGYVRNKNANHYAQFRDCLSSLIEKRIGMVQLLDHSSISALLRDKNVYELSCAIPISPLFAYSDSNLWSSKTIKALSESGCNNIDFTIKVDRRKKNGWLSDALENVSNIMGYGATKLKAKVETLEGEELSIIDFITTKILYIDENFSYTTGEFEHTDIYEKITRAYLEKLDEIETVQGAYNMVTNW*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0036	shell	direct	high	869	0.999	GCA_009379655.1_00626
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	23443	23880	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	23444	23881	GCA_009379655_1_22_37	GCA_009379655_1_22_37	+	294591	.	.	hypothetical protein	MKLKQYKEPIIWLLIGSCIALAVCIFSKSQLATMAVNDQRDIAKVVISLFGTFLGFLFALLAIIAGLSSNTLIKNMIITGHYFNLILSSEILSLLLFLSIVLCLISLFYISSFLFCSIVIMVILTCIFACRTTYKFFLVIGHIKT*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0037	shell	direct	high	437	0.998	GCA_009379655.1_00627
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	24065	24442	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	24066	24443	GCA_009379655_1_22_38	GCA_009379655_1_22_38	+	294591	.	PFAM:PF13744.5	transcriptional-regulator	MAVTEFGRAVRHARHHTNETLMTMAQALGVSVSFLSAVETGRSKVPNDLVVKISDFFSSKDYRFEENLEQLAQISNGSVAIDKLDYQHQMMVAGFASSTYSKEELDRICKLLTKIQQARREVIDE*	phrogs_hmm	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0038	shell	direct	high	377	0.997	GCA_009379655.1_00628
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	24435	24893	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	24436	24894	GCA_009379655_1_22_39	GCA_009379655_1_22_39	+	294591	.	PFAM:PF06114.12	metallo-protease	MNNYTMRGSRVPIMQPNKIQKFCEQLRRILGLKKSTLRHMDKFIENLCHAGLNIEIIADNDWLEVADAWCIPEKAIISMPEHLYMHIINKDARALHIFFHELGHFMLAHRAALHHNDSQPCQYEDSEWQADYFADCMMEFLGVRNYKQLSLF*	phrogs_hmm	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0039	shell	direct	high	458	0.998	GCA_009379655.1_00629
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	25060	25209	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	25061	25210	GCA_009379655_1_22_40	GCA_009379655_1_22_40	+	294591	.	.	hypothetical protein	MALKKMGAKPAPKGFKWVCCRTRKVRGKSEKVLDAHDYGYEAWCFLVRC*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0040	shell	direct	high	149	0.993	GCA_009379655.1_00630
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	25534	25695	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	25535	25696	GCA_009379655_1_22_41	GCA_009379655_1_22_41	+	294591	.	.	hypothetical protein	MRSTIQTVIFIVIMMFMLKGCLYAFDHECKIQEELGRQYYEESIHLQRENPNP*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0041	shell	direct	high	161	0.994	GCA_009379655.1_00631
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	25692	25958	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	25693	25959	GCA_009379655_1_22_42	GCA_009379655_1_22_42	+	294591	.	.	hypothetical protein	MSKLRKRYINRGIVNFTVVYSISRDATKIIHAIFMYLECGNPPREVCCNRKEIREYCTKLLNLQDFVFFQDFCPHLFKEFEQDKGAIA*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0042	shell	direct	high	266	0.996	GCA_009379655.1_00632
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	25955	26764	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	25956	26765	GCA_009379655_1_22_43	GCA_009379655_1_22_43	+	294591	.	PDB:3H4R_A	Exonuclease	MSNLIHNLSNADYHAHPAVSSSQLKHMLRTPAHFKASLETSKEPSDAMKLGSLVHTLLLEPHLVDYEYTVMPKFDRRTKQGKADYEAWLERNAHKSIITADQMDTATAMTDSLKQSSVAKLLKVNRTLIEASIFYTDQDTGIDCRVRPDFLITPCDSFPNGLIVDLKTTDNASPSAFKRTITNFGYHLSAAMYLDGYEAHFGTCPAYIWLVAERDAPYAVASYTPSDEMLERGKQDLDSALSMLRQCMDADDYPAYSADIATIDLPKWA*	common_virus_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0043	shell	direct	high	809	0.999	GCA_009379655.1_00633
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	27055	28038	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	27056	28039	GCA_009379655_1_22_44	GCA_009379655_1_22_44	+	294591	.	PFAM:PF03837.13	RecT-protein	MNELTTTQNQIVLDDGLFNKCHRLAEIMASGSCTIPKHLQGKVGDCFAIIGQSIRWGMDPYAVAQKTHLVNGTLGYEAQLVIAVINAKAPIVGRLKFDYFGDWSKVKSKDDKSDDVGVVVSAIIQGDTEPTTLSISMAQVGSVRNSPLWTADPRQQLAYLGAKRWARLHCPDVILGVYTPDELADTAREPKPINATVTDINAMVNQAVAQVNAPTQQAQIEQVDTAKLAKQIVTADTADALDDLAKAIAHHRQTGAINDDERTILGNAFKARKLYLTMRDDITQVTLDEAENARRVLYDNHAKLSPDDFESLDNQLDYHLNQLMEQQ*	common_virus_hmm	common_virus	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0044	cloud	direct	high	983	0.999	GCA_009379655.1_00634
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	28038	28265	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	28039	28266	GCA_009379655_1_22_45	GCA_009379655_1_22_45	+	294591	.	COG3311	Predicted DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]. 	MTTKSQQPHTLLPTQGMSRAKDILPLLPFGKSTLWRKVKSGKFPQPVRFGTNCTAWRNQDIHAWLTDPIAWEQNQ*	mmseqs_cdd	nonviral_gene	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0045	shell	direct	high	227	0.996	GCA_009379655.1_00635
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	28262	28714	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	28263	28715	GCA_009379655_1_22_46	GCA_009379655_1_22_46	+	294591	.	cd22268	double-psi beta-barrel fold of endolytic peptidoglycan transglycosylase RlpA and similar proteins. Endolytic peptidoglycan transglycosylase RlpA (rare lipoprotein A, RlpA) is a lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. It adopts a double-psi beta-barrel (DPBB) fold and is one of four SPOR-domain containing proteins in Escherichia coli (including FtsN, DedA and DamX) that bind peptidoglycan (PG) and are targeted to the septum during division. It directly interacts with the divisome protein FtsK in vitro, and deletion of the rlpA gene partially bypasses the requirement for functional FtsK, a large, multi-spanning membrane protein that facilitates double-stranded DNA translocation during division and sporulation in E. coli and Bacillus subtilis, respectively. In Pseudomonas aeruginosa, RlpA contributes to rod shape maintenance and daughter cell separation. The separation of daughter cells requires extensive PG remodeling. It has been suggested that amidases and RlpA work in tandem to degrade PG in the division septum and lateral wall to facilitate daughter cell separation.	MTQNQQILDYLMAGNTITPLEALERFGCFSLAARVYELKNTHGKIILLLILVASHAQAHTATWYGGQFHGKLTASGERYNQNAFTCASNKYKFGTRLKVINKANGKSVICRVNDRGGFGKYGTTLDLSKGAFKKIAPLSDGKVRVMIRRV*	mmseqs_cdd	nonviral_gene	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0046	cloud	direct	high	452	0.998	GCA_009379655.1_00636
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	28716	29195	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	28717	29196	GCA_009379655_1_22_47	GCA_009379655_1_22_47	+	294591	.	.	hypothetical protein	MIKQTTFKAGDKVYYPLMSDKILTVKRHGKNTIYVDIELFGPIVLGPNGKRADIHVTESLFHATQLNYELLTNLYPHIQFEEPKPTPKQVIKHLLRTHKYVACYTSDFDETPSPDSVKNFITHIRDGVALPFVDDECNMWRYAVPFDIKTGKVITEIEE*	.	hypothetical_protein	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0047	cloud	direct	high	479	0.998	GCA_009379655.1_00637
GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote	cenote	CDS	29274	29471	GCA_009379655.1	RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655.1_RCKT01000002.1	GCA_009379655.1|RCKT01000002.1	GCA_009379655_1_22	GCA_009379655_1_22@C0	29275	29472	GCA_009379655_1_22_48	GCA_009379655_1_22_48	+	294591	.	NF033499	excisionase Xis. Members of this family are excisionases such as Xis from the Gifsy-1 prophage of Salmonella enterica subsp. enterica serovar Typhimurium str. LT2.	MKKYLTSNEICEIFGICKMTLNRWEKRYPHGEPFPRPVMGGGLGGGVKRYLSQEVHAWELKHTAK*	mmseqs_cdd	nonviral_gene	C0	29472.0	0	29472	GCA_009379655.1|RCKT01000002.1@region_1_29472@tool_cenote_CDS_0048	shell	direct	high	197	0.995	GCA_009379655.1_00638
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	2	937	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	3	938	GCA_009379655_1_24_1	GCA_009379655_1_24_1	+	209505	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	ESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKTANTTMANTSSSPSVNKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQQTSQATQSTKNNQSTQSTATHRVQSGESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKAESSTPSRLGNTKNNSTRTPANTNIGITENYTVRSGDSLTMLSNRFGVAIGDLATANGLASNANLRIGQTLKVPKLTTTYTVKAGDGLIALARRYGISTQELAKMNNLEPTADLRIGQVLTVPNK*	common_virus_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0001	shell	direct	moderate	794	0.848	GCA_009379655.1_01094
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	1094	2926	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	1095	2927	GCA_009379655_1_24_2	GCA_009379655_1_24_2	-	209505	.	COG1274	Phosphoenolpyruvate carboxykinase, GTP-dependent [Energy production and conversion]. 	MTAKITAPDFVRHQALIHWVAEIAALTKPAAIEWCDGSEEENQRLIDLMIKNGTMIKLDEDKHPNSYLAFSDPTDVARVEDRTYICSKEEIDAGATNNWVEPSQMRTKLNDLFDGCMAGRTMYVVPFSMGPLGSHIAHIGIEITDSPYVVVSMRKMARMGKEVYDVLGADGEYVPCVHTVGSPLTEGQKDVAWPCNDDKYIVHFPETREIWSYGSGYGGNALLGKKCLALRIASAMGREQGWLAEHMLILGVTNPQGKKHYIAAAFPSACGKTNFAMLIPPAGYEGWKVETVGDDIAWIKPSEDGKLYAINPEAGFFGVAPGTNTKTNSNCMSTLGSDVIYTNVAVTDDGEVWWEGKTKETPANLTNWKREPHTGAERAAHANARFTVSAKQCPSIDPQWENPEGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAATMGSETTAAATGQQGVVRRDPFAMLPFTGYNMADYFNHWLQMGENLGKKAKAAGNQLPKMFKVNWFRRDTNGDFVWPGFGQNMRVLQWIIERCEGTANAVRTPIGLVPTYDDINWDQSDFTKAQFELVTSQDKDAWIKELESHAELFDKLGERMPTALKAHNAKLKADIEQA*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0002	persistent	direct	high	1832	0.999	GCA_009379655.1_01095
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	3224	4642	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	3225	4643	GCA_009379655_1_24_3	GCA_009379655_1_24_3	+	209505	.	PDB:3BH0_A	Helicase-ATPase	MAKAKSSYICQNCGAIYGKWAGQCTDCGEWNTLVEAPNTSLPHHHKSKTTTAPRKTANYAGAVSAVMTLDHVGITLETRMPTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGDSLSGSALYITGEESLSQVAMRAVRLGLPTDRLRVLAETNVDTICAALTTEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDSRFRMIRAIKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIHTSGMDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPVRLCVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRANAPAANHPQFKNIQIIAVDRLDEAIYQAFEINAG*	rep_hall_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0003	persistent	direct	high	1418	0.999	GCA_009379655.1_01096
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	4684	5403	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	4685	5404	GCA_009379655_1_24_4	GCA_009379655_1_24_4	-	209505	.	COG1118	ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. 	MSIKIQNIHKTFGDFVALGEISIDISTGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYFDSIDVTDIPVQHRGIGFVFQQYALFRHQTVAQNIAFGLTLLPRNTRPSANTIDRRVDELLDLVQLSHTKTRYPHELSGGQRQRVALARALATEPKLLLLDEPFGALDAKVRKSLRDSLKDIQREIGITSILVTHDQEEAQAISDKIVIMNHGQIEQIGTPSKLFAQPSSDFVVDFLGL*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0004	persistent	direct	high	719	0.999	GCA_009379655.1_01097
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	5496	6335	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	5497	6336	GCA_009379655_1_24_5	GCA_009379655_1_24_5	-	209505	.	COG4208	ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. 	MSHTSSYSYQKNPATRDKPWVRWSLIGIAVVFMGVMLVVPLVSVFYEALKEGWQAYQAALLEPDALASIKLTLITAAIILPINTIIGVALAYLITRHQFRGKFVITTLLDLPFAVSPVVAGLMFVLLFGANTRLGGYLESMGIQVIFATTGIVLATLFVTFAFIARELIPLMQAQGDSEEQAALTLGANGWQMFWKVTLPNIKWALLYGIILTNARAMGEFGAVSVVSGHIRGETNTVPLMIEIAYNEYAFTLAFALSSLLALLALITLVAQGLMSHKK*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0005	persistent	direct	high	839	0.999	GCA_009379655.1_01098
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	6380	7258	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	6381	7259	GCA_009379655_1_24_6	GCA_009379655_1_24_6	-	209505	.	TIGR02139	sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]	MPNQPIPLKNRARRVMPFFGLSMGISIFALGLLVILPFLMMILTTLQMSFDDIMQTIREPQVFAAIKLSLSMAMLATLTNLIFGTLAAWVLVRYEFWGKSFLNALVDLPFALPTAVTGIALATLYAPNGLFGQWFTRLGILLFNEPIKIAFTPIGIWLALVVVSFPFIVRAVQPVLAELSVEFEEAAAVMGAGRLTTFCRVILPEISPAMLIGAGMMFARATGEYGSVIFIAGNIPMQSEILPLIIVSKLEQFDVAGAACVSLFMLLISLVFLFTMNFIQWKLSARLGAKTN*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0006	persistent	direct	high	878	0.999	GCA_009379655.1_01099
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	7611	8048	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	7612	8049	GCA_009379655_1_24_7	GCA_009379655_1_24_7	+	209505	.	.	hypothetical protein	MMKNKWMRGLAILVLSLPTVTYAKTAAPKASEAPEVSLTQEEQMAIDFCDFSAYGVMHIAGDHQGGATKSEALTNHDKRMAELKDLIDLDPETATMLDKYWKGAIDRIFQESVQKTDAEKQAFVMGVGESSFYSCLDQVLKTPKN*	.	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0007	persistent	direct	high	438	1.0	GCA_009379655.1_01100
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	8079	9254	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	8080	9255	GCA_009379655_1_24_8	GCA_009379655_1_24_8	+	209505	.	PDB:1OYW_A	ATP-dependent-DNA-helicase	MTETTVKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKVTMLSGDVAQQKRERYLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDAFNLPALERHIDQKFKLNQFEFLDEHK*	common_virus_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0008	persistent	direct	high	1175	0.999	GCA_009379655.1_01101
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	9268	10443	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	9269	10444	GCA_009379655_1_24_9	GCA_009379655_1_24_9	+	209505	.	COG0635	Coproporphyrinogen III oxidase or related Fe-S oxidoreductase [Coenzyme transport and metabolism]. 	MYPDLLDPAHIPLSLYIHIPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIGGGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTIGINRLSIGVQSFDHNALTVLGRIHNPDQASNAIRAARIAGFDRVNADLMYGLPNQNPSKAVNDIQTAIDAGATHLSWYQLTIEPNTTFYCTPPQLPDEEIMAEIETLGQSVLTKHGFYNYEVSAWHGPNDAPCQHNLNYWQFGDYLAIGAGAHGKLTLKNHPDYQDGIYRYQKSRQPKDYLAFEDAPKMVNFERISDDNLPFEFMMNALRLKDGVSTDVFETRTGLLISTIDNEMLPLQHQGLMVLDPLRIAPTRLGFRYVNYLVSQFI*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0009	persistent	direct	high	1176	1.0	GCA_009379655.1_01102
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	10525	10665	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	10526	10666	GCA_009379655_1_24_10	GCA_009379655_1_24_10	-	209505	.	COG5510	Predicted small secreted protein  [Function unknown]. 	MKKVLVASIAAVVVLTGCNAIKGFGKDVSKAGEAVSDTAQKVEKKI*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0010	persistent	direct	high	140	0.993	GCA_009379655.1_01103
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	10913	11458	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	10914	11459	GCA_009379655_1_24_11	GCA_009379655_1_24_11	+	209505	.	COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]. 	MSQFSDALIHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEEVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQLGFVGDIGQSVGYHKPTSR*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0011	persistent	direct	high	545	0.998	GCA_009379655.1_01104
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	11574	11789	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	11575	11790	GCA_009379655_1_24_12	GCA_009379655_1_24_12	-	209505	.	.	hypothetical protein	MTDSTTSPARQKATNTYRQKALANIALVISHTEPHVLDALNQIMAHKDCSKAMAIKVALVEYANTLSQTSR*	.	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0012	shell	direct	high	215	0.995	GCA_009379655.1_01105
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	12192	12596	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	12193	12597	GCA_009379655_1_24_13	GCA_009379655_1_24_13	-	209505	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MLYPIAILKGGDKTAHGIFFPDVPNLASACDELQDIHKMALECLDVHFSGLVADGEEIPLPTNFDAHTQNSQFDGMMWAWVDVDLSKYDVKSHKINITLPNHLIAKIDEKVAAHKSLYKSRSNYLAQLAMADLA*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0013	shell	direct	high	404	0.998	GCA_009379655.1_01106
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	12809	13006	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	12810	13007	GCA_009379655_1_24_14	GCA_009379655_1_24_14	-	209505	.	PFAM:PF16777.4	transcriptional-regulator	MPKIVANPKTRAQIQKDSDARRGVKPIGFKVPIEFAELLDELAKQSGKTKNIIIMEAVELWAKQL*	phrogs_hmm	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0014	persistent	direct	high	197	0.995	GCA_009379655.1_01107
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	13399	13518	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	13400	13519	GCA_009379655_1_24_15	GCA_009379655_1_24_15	+	209505	.	PFAM:PF03665.12	tail-protein	MALTEHTKRQIHAHTKRYYPNECCGLNDCDGQTLIIAGV*	phrogs_hmm	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0015	.	unmatched_CDS	none	0	0	.
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	13583	14020	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	13584	14021	GCA_009379655_1_24_16	GCA_009379655_1_24_16	+	209505	.	6AF2_A	HIT domain-containing protein	MFQLHPTLAKDTFLVGDFPLSTVRLMNDCQFPWLILVPRVSGIKEIYELSAADQVQFLRESSWVSSQMAKIFGADKMNVAALGNQVLQLHFHHIVRYQNDAAWPNPVWGHEAMPYTQEVLSHMQQTLMMALRGHHQMPFDWKMDV*	hhsuite_tools	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0016	persistent	direct	high	437	0.998	GCA_009379655.1_01108
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	14174	14836	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	14175	14837	GCA_009379655_1_24_17	GCA_009379655_1_24_17	+	209505	.	PRK00043	thiamine phosphate synthase. 	MTLQSIDKVPKLYLLTNDDELTTLLDKLERVFDTGAVSLLQVRRKSTLKLYDLATVYREAEMIVSLANDYDIKVVMNDNLELASHFGTGLHLGQRDGSVRVAREILGDHVVIGRTCHTDLALFKEAKREGATYGAMGTAFASITKPRAKIISKDILKKACELDFPLCVIGGITLENIHQLRDKLNGAAIDYIAVTADIMGHSVDTIADKCLAWQQKLNTW*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0017	persistent	direct	high	662	0.998	GCA_009379655.1_01109
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	14841	18395	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	14842	18396	GCA_009379655_1_24_18	GCA_009379655_1_24_18	+	209505	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MIDTFKPKLDLPTKANFKTTLPLLGGADLSFWLALAAKSEERLIVMIANHQNELNQLDTELSFFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGVLLVSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQAGMNTHHAQKLPSSAKITEFRLLPAREFPLEAGKEMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQVLKAYPRVVINTNNDTAKIGAMESLPPPILPINHQAAKPLSELLSFIKSGQVPILLVAESAGRREIILELLKDKVAVKVVDNYQEFINNLDDFNTDCIALSVAPIERGLWLRDETGGLCIISETQIFGRQVLQTRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATNAIKQGKTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRTEMIDRFGTLPTQTQNLFAVHRIRIRAKALGITKIDATQTTISIEFRADTPIDGLAIIKLIQSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESTKTA*	common_virus_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0018	persistent	direct	high	3554	1.0	GCA_009379655.1_01110
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	18392	18661	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	18393	18662	GCA_009379655_1_24_19	GCA_009379655_1_24_19	-	209505	.	.	hypothetical protein	MPMSIPTKATVGYTQRRLFMVSMTVGLISLSGCQHIQVTKSPIPIIIHSHTKSPSQPKPTPTDAMPTKNRPISPPTQKSNTIFILEDWF*	.	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0019	persistent	ambiguous	low	5	0.019	GCA_009379655.1_01110
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	18661	19923	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	18662	19924	GCA_009379655_1_24_20	GCA_009379655_1_24_20	-	209505	.	TIGR02800	tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MKSPITKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLSLAGLGTTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTVNGSIITPTFSPDGLSIAYSVQTKNNLPLIYIVPVSGGTPKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTLNGAENAPNYLADASGFIYTADKGTRRQSLYRYDFGTTHSTQIASYATNPRLSPDGSKLVYLSGGQIIIANTKGHIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRTIPTSGTVRDPIWSK*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0020	persistent	direct	high	1262	0.999	GCA_009379655.1_01111
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	19947	20729	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	19948	20730	GCA_009379655_1_24_21	GCA_009379655_1_24_21	-	209505	.	4G7X_B	Putative uncharacterized protein, TolA protein	MRLSDNHPTVNFDKSVLILPILASVLLHAVIIIAVAAPLMTPPKPNTAIQTTLVGQEAFHSAKTALINHHTNQNKPTADNASSTITANDNAFMHAQNQHRYRPQVSTSATTTQAYHPLPNSAPFESNSPSIQNQPTNAHAKLAEYSNNDSGLEQNHTEPTPSRAQINAAISSVKHRIETIWQRYPKQPNQTITFQVNMNQQGDVTSIQFGGGHPDLHESVEAAVYAAAPFYELGGMRDSIRLQFTTEQLIMDNHQTPNEP*	hhsuite_tools	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0021	persistent	direct	high	782	0.999	GCA_009379655.1_01112
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	20760	21194	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	20761	21195	GCA_009379655_1_24_22	GCA_009379655_1_24_22	-	209505	.	TIGR02801	TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MVTSNRFARRQRPLNSDMNVVPYIDVMLVLLVIFIVTAPMLATGIEVSLPKEQTKPITQADKLPVIVSIQADGNLYVSHKNAIDVPITPDKLDTLLRQMHQDNTDLQVMVNADADNAYSRIMQIMALIQNVGITQVSLLSESVQ*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0022	persistent	direct	high	434	0.998	GCA_009379655.1_01113
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	21220	21909	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	21221	21910	GCA_009379655_1_24_23	GCA_009379655_1_24_23	-	209505	.	TIGR02796	TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MNESISLISLVIEASVVVKLVMAILLLLSTISWVLIFHLGTKIGGIAKFDKRFERWFWTDDIDHQLSVVQAESERAGLELIFYTGFYDQNHQDQDSSLSDDKKVQIVERRLRMALGSEQVHLEKGLSTLATIGSVSPYIGLFGTVWGIMNAFIGLGQAESVGLATVAPSIAEALIATALGLFAAIPATMAYNHFATKSNTLYENRSLFCEGLISALVTNLAKKNTASTL*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0023	persistent	direct	high	689	0.999	GCA_009379655.1_01114
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	22185	26357	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	22186	26358	GCA_009379655_1_24_24	GCA_009379655_1_24_24	+	209505	.	PDB:5XDR_A	Replicative-polyprotein	MHSTDNLPVLAKDRHYLNKLKQKMNSTTGDLKTKCKIRYDAIYERSAEQVANRMDSIPKNLSEKLNHDLPVTAEADTLIQAIRDHQVVIIAGETGSGKTTQLPKLAMMAGRGITGQIGHTQPRRLAARSVAMRIAEELGEPLGQTVSFKIRFTEEGGKHSIVKLMTDGILLAELGSDKFLANYDTIIIDEAHERSLNIDFIMGYLKRLLPKRPDLKVIITSATLDTQRFSDYFAANGKPAPVYIVEGRSYPVEVRYHPLTDTIVSSQDDDAFDDIEDNLPRALTAAVNECFEDARTKGHPDQADILIFAATEAEIRELQEVLMLYAPAHTEILPLFARQSYGEQQKIFAPSGKGRRIIIATNVAETALTVPNIRYVIDLGFARISRYNYRSRIQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEEDFNSRPEFTEPEILRTNLASVILQMERLQLGDVNAFDFITPPDLRLVNDGRKLLIELGALDDKSFTKTRAKKGRTQLSSLTKIGQQMAKMPIDPRLARMLVAGDTFDCLADILIIVSALAVQDVRERPINKHAQADQKHALFRKEDSDFLFYLELFAALFDQHSTNDNQALSSNARRNFAKKHYLSYARIREWQKTHRQLSEMMAEMGFEINKQKNHQNDVKIDTKKGVRLSLKSGTSHQKSIKQALVGAKALKNDIDNKTSIHYANIHRALLSALLSFVAHKTDTVGEYLMARSQKARIFPASTLHKKGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPNLLKYHYFEPHWSKKAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDALVANQYGMQMKFLADNANKIKDIERIEDRLRRRDLLVDEESLYQFYDAKIPNHIASRKSFEEFYYDAENKTPNFLHFSDEDVLNEAVDDSREFPESWHLGGVRLPLSYVFDPAADNDGVTVHVPIKALAQVDPVALLWGISGWRYELVLQLLKTLPKEIRRQIVPIPDTCQKIFHQLDASSKMGLLDQLVAALKTLGVQAHAQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARHRKASVQSIAIEQGVHHHFPNHFNFVKNKHTSGIVMQEFSALKADAAQSAVFIATFTEMNAALAEHKKGVLTLIKGHLGAKQKQLTGQIDKAFKLAFAPLGDLEKLKNIVVHATLEACLYDYGPDFDHKPVSQHVDHARAAIAGLITQNNQWLISHLPLDEREFDDCQDLILKNFLLVGQEILRNLKEIYTAWQTARGKLLMLDQEIFGENIEDIEDQLDDLQLANFVYQTDYRHWRQYPRYLQALNIRLDRLQHNLEADLDAVYLLDTHMERLARCVKNPKFAEYRWLVEEYRINLFAQPMKTVQPVSAKRLETLWANLTTQ*	common_virus_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0024	persistent	direct	high	4172	1.0	GCA_009379655.1_01115
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	26619	28115	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	26620	28116	GCA_009379655_1_24_25	GCA_009379655_1_24_25	+	209505	.	3PIK_A	Cation efflux system protein cusC	MSIKCQLVAIDNIIKPCYDKILNFVYFSTMKMPYFLLLGLLLVQQADADYSLLDAQKQLMSSSPAIQASHALYQADVLQAESLQKLHYPRISLNAHAFVLQQNSSIPLDHIKEQTAQHINTHFDHRFGSAPDGLLDALHDSTQTALDRLPDHQDVKLRHDGITPNITATMPIYTGGLISSSKNIANLQAQRGKFGLQERISLAKLNLIRHYFNVQLQKQLTDTQQNTLSAMQLHVDNAYKLEQQGFISRGQRMQFEVARNRVQRLYQSTQNQHQNSIYELAVLLGLPHIEPLSTPLFINTQHRPNWQALLKDSQNTPLNQKLKTDTQLADENIALRQSTKKPKIAAVARYTLDDKPDWFAGVAVQYNLFLGIDRDKQIEAAHLQKQAAQLGHEQVNEHITTTMHTAYGEMVLAQKTHALLQQNHQAAKENLRIQTLSFQEGFGTVAGVVDAQSVLSQIDSETALNAYRYLLALATLLHYTGTIDDFDDYLSLDDVHKL*	hhsuite_tools	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0025	persistent	direct	high	1496	0.999	GCA_009379655.1_01116
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	28162	29325	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	28163	29326	GCA_009379655_1_24_26	GCA_009379655_1_24_26	+	209505	.	COG1566	Multidrug resistance efflux pump [Defense mechanisms]. 	MTDKTDDAKPDTDGNHPKKQKPHTQAKSKPRPLALFLLLALIGSVLLVIIFGLIQSYGTPQNLPTANAIGSTNEPPKGVIAHLRQKITGPATFSIQGRVEGETVNISTKLPSRVAAIYVKEGQAVRAGEPLVQLVSPEIDAKKQQAAAMLQSALAFQSSTDRGTRQENVDTLYANWQSAKAQATLAEESHRRGEYLYQEGVISRQRRDEMRAAKQSSAQIAQAAQQQYLKAERGRTDELKSSADAQVQIARAAVAEADALDAETMLYAPIDGTVSKIYIQSSELVMPAVPVMSLLDNHPTITISVQENQYSHVHVLPKLTGFIPALNKTADFKIVHTDDEGEFATIKNTRQTGGYDIHSFKTKLEPITPIEGLKVGMSVIFDITVLP*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0026	persistent	direct	high	1163	0.999	GCA_009379655.1_01117
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	29353	30540	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	29354	30541	GCA_009379655_1_24_27	GCA_009379655_1_24_27	+	209505	.	PF12698.7	ABC-2 family transporter protein	MIVRFIRAFCQAFLRELNRLSCNRFDLAMAMIAPLVIIVLFGAMFYHGKAHHLPVALVDEDNSELSHLIYQHIHHNETVETVEAVLILDNVQDAHHAINRLDVGGYIHIPKDAQNRLVRGENTGIHIAYNQSFFSIGSAISSALSKSTKGGIAKFIQTKHLTGVLPHLSGNMPHVKISVLFNPNLSYEFFLEPFLVAAVLHLLLCCLVAHAIGQEFHENSVHEWLYHSPFGALFGKISVYVLIISLWHGLWQAWLIGVRGWFVAGSLFVLIIGQLLFYLAYALFGAMVVLKTQNINKSYGILAVYGGSSMSFAGVTLPLNNASGFTQFWSQIIPFTPFARLQVEQWVIGSPFIITLAHLNSLLIFVLIFAIGSLLLLRRIKKTLIAIPNTPKDDS*	hhsuite_tools	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0027	persistent	direct	high	1187	0.999	GCA_009379655.1_01118
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	30540	31640	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	30541	31641	GCA_009379655_1_24_28	GCA_009379655_1_24_28	+	209505	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MRRFIKQYLTIWLDVIKDRSIFLTMVLSVVFYGFFYPFAYQAQRPADLPIVIVDEEQSPLTQAIIHTTSHTPNIHVLAVVSDFRQAQMLVQSAKADGILLLPNNLSQSIHHGQTGGVGLYLSSAYFLRTQNIGAGLVSSLQATIIQELGQVTQTRHKPMPELIHQSALFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGYRQRLWRASACDFLAIYAVALTIGCLSCFYLFGFVFWWHDYPRGGNFWGMMLGVPIFVSCAIGVALLIASWVADGAKVGVLLIFSSVPLFMLTGLAYPLMAMPKFLQPLAHALPTTQGVQMFIQLNQMGVPIQDVWQKMAYLASVAVLCLGVAFWRLRLVNRSV*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0028	persistent	direct	high	1100	0.999	GCA_009379655.1_01119
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	32276	32689	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	32277	32690	GCA_009379655_1_24_29	GCA_009379655_1_24_29	+	209505	.	COG1598	Predicted nuclease of the RNAse H fold, HicB family [Defense mechanisms]. 	MHYPVTLTPDTDGFCVTFRDIPEAISQGDTTDEALDMAQDALMVAMEFYFEDNRAVPMPSQAQDGEHLVSLPPSVWVKVLLLNEMIAQNVSQAELAKRMGIVPQSLTRLVDLSHTTKIDTLANAFAKLGKQLQVGLV*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0029	shell	direct	high	413	0.998	GCA_009379655.1_01120
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	32669	33457	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	32670	33458	GCA_009379655_1_24_30	GCA_009379655_1_24_30	-	209505	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MKLTKQLKADIISHAFDCYPAECCGLIVDKKYIPCTNKATDDEQFILCPKDFARAESMGQIQAIVHSHPDGNAEPSEVDRVQMGIHGIDWVICAFGYHAGGEQYFDVKCHKPKAYQAPLLGREYHHGVQDCYSLVRDYYNRELDIHLPDFHRSDAWWEHENHEPLYENNFTKAGFIKMQDETDLQKHDVILCRVGRTHHVNHALIYVGDGKLKSETTPDCVGNALILHHPHGSLSVREIYGDNWQRRTAMVVRHQASNQTNL*	mmseqs_cdd	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0030	shell	direct	high	788	0.999	GCA_009379655.1_01121
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	33466	34179	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	33467	34180	GCA_009379655_1_24_31	GCA_009379655_1_24_31	-	209505	.	PFAM:PF05100.11	minor-tail-protein-	MPLNSDFQKPTVDGLITLFELDASKLGAGILRFHGHNHEHNDGVITFRGKAYNPQALSVTGLEMRSDGRASTPTLTLANNIAGVQGAVSAYCLQFNDFAAAKLRVITTLAKYLDPINFDGGNPTASDECKEQIWFVEQKTSENAQQVTFELSNPIDLEGQKIPVREITNYCHWAVVGKYRGEECGYTGAIMFDEHDNPTDNPIMDKCGGRMKSCVCRFGQNKPLPFGGCPASSLIGK*	hallmark_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0031	shell	direct	high	713	0.999	GCA_009379655.1_01122
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	34233	34625	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	34234	34626	GCA_009379655_1_24_32	GCA_009379655_1_24_32	-	209505	.	.	hypothetical protein	MSETTLTELSRTEATVLQSFIAQVDFWKNQHGDKANTIEITYYPEDDGFEVSNNEANNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTAFILSFKDNRYGVRAALASEAKTTDKADDAKAPNEA*	.	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0032	persistent	direct	high	392	0.997	GCA_009379655.1_01123
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	34746	34928	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	34747	34929	GCA_009379655_1_24_33	GCA_009379655_1_24_33	-	209505	.	.	hypothetical protein	MGKYDMAALACESMNWASTLIHLAKQNKHHADTLLDIAGYLLDDGQIEFANMADEFEKSL*	.	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0033	shell	direct	high	182	0.995	GCA_009379655.1_01124
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	34940	35503	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	34941	35504	GCA_009379655_1_24_34	GCA_009379655_1_24_34	-	209505	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNNLPQNANNGNFVSVFHGDIDQTTEMLCNARDLHQFLNVGRDFSNWIKNRIKQYGFVKGQDFIVMKNLSSPKRATAKSRQQVMIDYHITLDMAKELAMIENNEQGRKVRRYFIQMEKQALQSTQSLTAQITETTITLKHFEDGLSHAGRYLATHGKQTKPRLKAKLNELLAKAQPFLPFSEFGGVK*	common_virus_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0034	shell	direct	high	563	0.998	GCA_009379655.1_01125
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	35677	35937	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	35678	35938	GCA_009379655_1_24_35	GCA_009379655_1_24_35	+	209505	.	PFAM:PF16777.4	partition-protein-ATPase	MSYINSTELLQNQDTWKRSQVRLPNSLHQVVVQYANNQNMSLNTAIIHLLDIGLTSETQRVEGFRELKRLLNEANAKIQALENQEN*	phrogs_hmm	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0035	shell	direct	high	260	0.996	GCA_009379655.1_01126
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	35976	36653	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	35977	36654	GCA_009379655_1_24_36	GCA_009379655_1_24_36	-	209505	.	.	hypothetical protein	MKKLLIAGVVGLSLVGCATTSTTYTPSRKQISEPPIGSTNTASLGDKLLLQGVMTEREALYFPTAQKFTLGSTIGSGYYAKQRETAEYEFFSNGTNETGGGTFRDVIGMEMPFGIALRKSDNAICVTSMIGGAGGCRDGLQFEKRNWTVAGSNSFQQTLLYNGKVGNKINIAYREFSSDLARPAFNNDVEYDLSESNQIGYKGALLEVIEANNQMIKYKVIKNFN*	.	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0036	shell	direct	high	677	0.999	GCA_009379655.1_01127
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	37019	37480	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	37020	37481	GCA_009379655_1_24_37	GCA_009379655_1_24_37	-	209505	.	.	hypothetical protein	MAFDLTLLKKDAKMSAKREIEFDGLELTLEIQASEAFKRAAAEVQKIANTPKKVTKDSLKRGNQDEIGEYEAMLFILGEYCISQWNVTADGEPLAINGDNFLILLDQGFEKDKLTQFITLLFETYASLSQEFEDNKAKLVKKSTTATNGKKSG*	.	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0037	shell	direct	high	461	0.998	GCA_009379655.1_01128
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	37531	37677	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	37532	37678	GCA_009379655_1_24_38	GCA_009379655_1_24_38	-	209505	.	.	hypothetical protein	MEYITIIVDFMKYLIEKHGLFVIWLMVASLITLYKLDMILTAVHLFFN*	.	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0038	shell	direct	high	146	0.993	GCA_009379655.1_01129
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	37761	38669	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	37762	38670	GCA_009379655_1_24_39	GCA_009379655_1_24_39	-	209505	.	PDB:5NGJ_B	Tail-tube-protein	MSSGAFVKTAYAKQTGETLPKTGWKTLPNISNGLTVATELTNSEMLSGSRMAKAGMVTSASVQGDIETELMFGAYDELLAAAFWSEWSAGASPNTLSVGATKHQFAIAKDFSDINVNHVFTGCVVSSFGLSVDTSSLIKLKFGMTGLGYQESKTTSFAKTPTAQADTAKASGLSIGEIKVNGTKLDVCVESFSFELDNQTEVQKCLGDNIYGGNILAMLTNITGSMTIAYSQKAHEMISNQMTGATLSLELPIKFGNSKYVIKIPKFQVSGEIPSPSGTDLVTVDLSYTVVDESPVIEKHTA*	hallmark_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0039	shell	direct	high	908	0.999	GCA_009379655.1_01130
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	38673	38861	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	38674	38862	GCA_009379655_1_24_40	GCA_009379655_1_24_40	-	209505	.	.	hypothetical protein	MPKNRHRRLLQLYGEINELGAILDAPKPKDIHPHEWILMKDQLYYMRQYYRVLKQRTDDTEN*	.	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0040	shell	direct	high	188	0.995	GCA_009379655.1_01131
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	38861	39244	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	38862	39245	GCA_009379655_1_24_41	GCA_009379655_1_24_41	-	209505	.	PDB:2L25_A	tail-completion-protein	MNSFHIEQTLLTHIKSWEHFDDIPLAKENRNFKPPDGIWGRVTILGGVNQVRSISNTPNILQQGTLVIQLFCPQDLGTVAIKQKADSLANHLQTRRFGRLETLTASIINAGFHDYYQINVSVAWRYY*	hallmark_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0041	shell	direct	high	383	0.997	GCA_009379655.1_01132
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	39312	40193	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	39313	40194	GCA_009379655_1_24_42	GCA_009379655_1_24_42	-	209505	.	.	hypothetical protein	MMIQVSGDNAFIRAIIERYLQVQDTSPDKLDDLANEIVWLILKAFDNELRSSDAFNLPYKDITDSVFDSEKRLLTGSLTTFGKNMETAIHHSFDEDRPNKHHEKKEKYVKRFMYIHGKFVEHILLAQVQKEFIQDAVRQAQETAKKAEAAAESAEEIAKIAKNNADKAEKTYNTMFANYVTILGIFTAIIVTIFGGLNVVDTVISYGNTHFSTIIFLAALVLMCVVCLLYFLAKIILKLNGKDDDNQRFTLECLFGAIFITCIGLIVFAWCVSPTKITPELDKTTDKIEQKSD*	.	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0042	shell	direct	high	879	0.997	GCA_009379655.1_01133
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	40190	40693	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	40191	40694	GCA_009379655_1_24_43	GCA_009379655_1_24_43	-	209505	.	COG3600	Uncharacterized phage-associated protein  [Mobilome: prophages, transposons]. 	MIKAPYNPMDVANYIVAEAIKREKPVTHLKLQKLLYYVVAKYAKTYNTILINEDIVKWQYGPVVKSVYHYFKLHGDRIITKPIAYLESAEIFNLKFTDVDVNNAQLGNDKRLVDTVGQVLNDTDLLTAYELVERTHKEPAWRNFEPEILQAKQELSYSMTELKVANI*	mmseqs_cdd	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0043	shell	direct	high	503	0.998	GCA_009379655.1_01134
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	41044	41244	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	41045	41245	GCA_009379655_1_24_44	GCA_009379655_1_24_44	+	209505	.	PFAM:PF16777.4	transcriptional-regulator	MPKITSTPKTQTQIQKDSNARRGVKNKAFTLKLDDIELIKSLSKRLNIPQNQLIMDAVRAYQRQLD*	phrogs_hmm	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0044	shell	direct	high	200	0.995	GCA_009379655.1_01135
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	41241	41588	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	41242	41589	GCA_009379655_1_24_45	GCA_009379655_1_24_45	-	209505	.	PFAM:PF04883.11	tail-component	MGIKWHKKITVEPIADKIDATYRKFAIDCYNNVIALSPVRKGRYKNAHHISIGSPSYAETGGGIELVLGLPKHTYPLIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSAIANLG*	hallmark_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0045	persistent	direct	high	347	0.997	GCA_009379655.1_01136
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	41578	41937	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	41579	41938	GCA_009379655_1_24_46	GCA_009379655_1_24_46	-	209505	.	PFAM:PF12206.7	head-closure-Hc1	MKQEITADIANAFDTDLKDTVKDFTAKRIILSDDDWAVNDTQVLSTINYSGRGVFTGFYAHEIDNKTIMQQDTKLICLQSELTDRPQMNDSINQMKVMNISQDPAGICYFIQLRGTNGD*	phrogs_hmm	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0046	persistent	direct	high	359	0.997	GCA_009379655.1_01137
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	41934	42284	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	41935	42285	GCA_009379655_1_24_47	GCA_009379655_1_24_47	-	209505	.	CDD:cd08053	Head-Tail-Connector-Protein	MLDDLPIDTPDKERVLMVVNAYLINKGVKFVGDVPEPIKQAGLELAHAFMNGELLAGRTEGVVTSKSSKAGDVSVSKTYADGADGQAMGQHEMIALALMQPYIKKSYGVNALVGRL*	hallmark_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0047	shell	direct	high	350	0.997	GCA_009379655.1_01138
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	42341	42583	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	42342	42584	GCA_009379655_1_24_48	GCA_009379655_1_24_48	-	209505	.	PFAM:PF10281.8	Arc-like-repressor	MERILYFTDDFSQENQAYAKQHGLIIRNAKAYGAVDYLEQCDKVCGQVPIAYEHLPRFELDDNVSDDDTKPKRTRKPKEE*	phrogs_hmm	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0048	shell	direct	high	242	0.996	GCA_009379655.1_01139
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	42593	43546	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	42594	43547	GCA_009379655_1_24_49	GCA_009379655_1_24_49	-	209505	.	PDB:4AN5_F	Major-Capsid-protein	MAFDLVKFNQETHLVMTETIAQQVDKFNAQSNSTIQLIAKPFKGDFDVASSFKAIANLVRHRDVENGQNNISSARLTQHKNVAVKIAAGTPEILWEAAQYNWTMQNPQLAAIKIGEQLGRATIADMLNTAIKCGVSAIKGNTALVEGDGTTALDFASLTKGASRFGDRSQAIGAWVMHSGALTNLQLKALGNNERLFTYENVSVLRDPQGRLFIVTDCPDLVDESTKHNILGLTEGGLIVHNQNDFNSVIVPKTGTENITNAYQAEWSYGASVKGYTWDMTAGGANPNAGALATPTNWKKTASSDKDTAGVLVVAKA*	hallmark_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0049	shell	direct	high	953	0.999	GCA_009379655.1_01140
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	43549	44283	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	43550	44284	GCA_009379655_1_24_50	GCA_009379655_1_24_50	-	209505	.	PFAM:PF06810.10	minor-structural-protein-	MQLKTDENGNVVVQDGKPVYMYDDGQEIAFDAMQNMAKISQLNAEAKQHREAKEKAETLLKAFDGLNADDAKKALETVKNLDDKRLIDAGEVEKVKAEAKKAFDEQLAEKDAQINKIKQEYNNAVIGGAFARSSFIKDKTLLPSDIVQSSFGSHFTMENGKIVANLGGNPIYSRKNPGELADFDEALEIIISQYPHKDSILRGSGASGAGATQAGVGKNTPKSLADCKTDEERVAWLNEQNNGE*	hallmark_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0050	shell	direct	high	734	0.999	GCA_009379655.1_01141
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	44358	45317	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	44359	45318	GCA_009379655_1_24_51	GCA_009379655_1_24_51	-	209505	.	PFAM:PF06152.10	minor-capsid-protein	MKHLINLERFKVHLANKFKTTLNEIDEFLQLVVFRHEISELNYKEFELLIGESKQKLLGFLAGYALELTQDWQELYDYSYTLETKMVDDDKPDTLNMNEPQFDADSPIKLSAQVGVTLNQILAKFGDEQSTQISNAISYAYSNGLTNQELIQIIRGTRKNRYQDGILQTTTRHAKTIAHTGTAIVASQAKQQFIHDNKDIIKGIKILATLDLRTSSICRGLDGVFMPLDKARYPPYHFNCRSSFEIVYDGYQTPKQRASMDGVVKNQTYYEWLKNQPKAYQVEVLGKKKAKLFQESSVDAFKEFDKNLRPMTLDEIKAQ*	hallmark_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0051	shell	direct	high	959	0.999	GCA_009379655.1_01142
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	45620	45988	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	45621	45989	GCA_009379655_1_24_52	GCA_009379655_1_24_52	-	209505	.	.	hypothetical protein	MNEFIIPNSNSVSNDFNYSRTDLDAQEQQIAEFIKKGGKVINLDNSEQPKKKSAKKRDFNNQRINSKMHLVLCYLKRSGKRMTGLQIQEKFGISATTLGSQTRLLNAQASKQYNQNSNPSRK*	.	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0052	shell	direct	high	368	0.997	GCA_009379655.1_01143
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	46193	46843	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	46194	46844	GCA_009379655_1_24_53	GCA_009379655_1_24_53	+	209505	.	PDB:2FJR_A	Repressor-protein-CI	MPSERAKADQFPKMIRRYSKGQAKPRNDKMKLLTQCLGVPITWLDYGEGEMTKNNDKLAPITEWDNGAPLDDDEAEIPFYKDIAFACGHGAVNDEVTHETRKLRMGKRTLSNLGVMSENAFAVTARDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVSRLERW*	common_virus_hmm	common_virus	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0053	shell	direct	high	650	0.998	GCA_009379655.1_01144
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	46895	47734	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	46896	47735	GCA_009379655_1_24_54	GCA_009379655_1_24_54	+	209505	.	PF14337.6	Domain of unknown function (DUF4393)	MTAETFHLIPAITGAVSGAASVGLLNGPLQTLQDIWFVVYGHKWHYKVESIKAQQAMNIQAMQNNIQTGIEKIPANALKDPNVAIIGPALEASRFHMNEENIREMFANLIVSAMDERKDGQMHHAFVEIIKSLSPLDAKNLKYLNQDSAKNISPIANIIRQESNSYHMLYQHVFLGNPEVSDQDLIAPSIDNLSRLKLIDITYNDYLTDDSEYESFYHSAPYQEMTSALDKEHEALNLDISILQNPDLKIEFEGKILNKDERSEKLDQVIKGLESKIEI*	hhsuite_tools	nonviral_gene	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0054	shell	direct	high	839	0.999	GCA_009379655.1_01145
GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote	cenote	CDS	48092	48478	GCA_009379655.1	RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655.1_RCKT01000004.1	GCA_009379655.1|RCKT01000004.1	GCA_009379655_1_24	GCA_009379655_1_24@C0	48093	48479	GCA_009379655_1_24_55	GCA_009379655_1_24_55	-	209505	.	.	hypothetical protein	MFGIKLLHSDDFIKSASSFGCFLAIMDKQTNKNHVYNLSTQVQRFELIDIDQVANLANSVQNGAISATVGTLLVGAGVLPALVALSIGAGLPNRTKDAYVCHIEFDDSKSAILQLSKHKYQQFLKHIA*	.	hypothetical_protein	C0	48479.0	0	48479	GCA_009379655.1|RCKT01000004.1@region_1_48479@tool_cenote_CDS_0055	shell	direct	high	386	0.997	GCA_009379655.1_01146
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	1	3399	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	2	3400	GCA_009379655_1_29_1	GCA_009379655_1_29_1	-	64598	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MAKVLSRLDILLHANTANYVREMKKATDKTKKELKSVADYGKLVGGQLGIAFATLGSAVSISHIIATADQMQNLASQIRLATDSTEQFHAVQTELRAIANEQRSSFDAVVDLYSNSQRSLSALGKSQQDVINFTRNMTMAMNVGGRSAQAQAAALTQLGQALASGVLRGDEFNSVAEQAPILMDLIAKEMGVTSNAIRDLAKDGKITADVVYNAVAKATDSLSAMSAKMPTTVSQALQVIKNEYNYLIDDIMNQNSMMSQNIANAVLWAAEHFRTLVSAAAMVGVVWLGIIAKNSALVTSFVTLTGATVASTKASVANAFSVQGQITAYQVLELKILSLSTGLGFKIVKTIQATTNAVAYARSLVGLAKSFNTATAAARLHTLALAGVTTAKRRAIGVGILATRTITGLGGAFMSLGRIITAHPIIAIGAVLASVVVSTHGVTGALESLSDAFGVVTLMAKDFIGFIGDGFSMAWDTVSAFADNMLAKVGDTTKGSTGAFSNFFATSHGGFVGMLQVAAKTFDLINATAKAGAKNALHNFVQLGKTTKNIFYGIGNAFVSIIEMMINNAARKIDFLSTKANGMAKVLGIEASIPLIGTVSLGRVQYDNVDFGAVASIADNNTNSAYNYVTQLADKATQATKANASLADSYNSVGSAATNASDKTKKTADDIGDAINELDALVAKLHHESHQLLNNSLSEMIFETDNKLGKFYEATQAQKQKLKDLAGQKDLYTATKKANDELKSLARTIKLVGKQTPFDELAHDLFDVRHEMSVLNGETKNNLLLWAANAENAKLAYELNQRSSQIKHDAMLSNHASSYQRELLNIDREINQEIQKYAGLKQDGTEHIYEQIKANLQLHATEQKKLATHKAYMQLVFDSRSEEEKRLDILDEQLTILAEQHRLYGTDVSAQSRQLMSELLDLPKPDSSAFDELNFEHETRLNRLGRFMDKQKQLYKDNEDALTQIAQEGVAARIAIDEAYQDAKRTLILSQGENIFESLASITKDSLGEQSRLYRAMFAMQQGFAIAQAGIAMQQAISQGLAKGFPEGLADMATAVSHGAKIVSAIKSVVMPVGQAHDGIMSVPKSGTWNLEKGERVLPRHTAKALDDKLDKIGTGDRPVNVVINNYSGEKTD	hallmark_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	3577	4122	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	3578	4123	GCA_009379655_1_29_2	GCA_009379655_1_29_2	-	64598	.	.	hypothetical protein	MKNHFLVGLILFLAILTPSFAKTNVHKSDFDGSVTIRTEPSWVKCPQSKMMCPLVGYAWSDGEFGEQYATLIIEINDSWLKSYQSINRLKLNIDGEVTELNKLTPNQPTSYSHDQVSAISMDYFVIPLDKLNFFETAASIKMQVATDKGLYDMIYKGGKKQTRANKMLSEFMSALEQNKQK*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0002	shell	direct	high	545	0.998	GCA_009379655.1_01801
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	4186	4434	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	4187	4435	GCA_009379655_1_29_3	GCA_009379655_1_29_3	-	64598	.	PFAM:PF06223.11	tail-protein	MTAHEFAQWRAYDRLDPIGGYRGDIQSAVIACAMAGGKPSDYLIIDPNPMTDEEREAYELEQRKAQLQAQMERTLAMFSAIG*	phrogs_hmm	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0003	shell	direct	high	248	0.996	GCA_009379655.1_01802
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	4509	4856	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	4510	4857	GCA_009379655_1_29_4	GCA_009379655_1_29_4	-	64598	.	CDD:pfam16459	Tail-assembly-chaperone	MSKVATLATELLAGLSAINEPKKINIAEFDGDIYIRQISVGEQEQIAKHLEKEKGNNMALSFIFGVCDEKGNRLFSLDDLDSINQINFKAMLSVIKEINKLNGLDIDTEDHEKNS*	hallmark_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0004	shell	direct	high	347	0.997	GCA_009379655.1_01803
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	4939	5370	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	4940	5371	GCA_009379655_1_29_5	GCA_009379655_1_29_5	-	64598	.	PFAM:PF16461.4	tail-tube-protein	MAKVVENLADSFFTLHVSADGNEYQKIEHLQKCDHPSEEKVLDEVTATDDRRTVKAPIDFKEESEIEFEYALDPKDTTHQLLQTSFEGGKELHWQLKYVVATGESRQFKGIISKLTTDNSDQKKKIRKTGTITITGDVTKVTG*	hallmark_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0005	shell	direct	high	431	0.998	GCA_009379655.1_01804
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	5398	5754	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	5399	5755	GCA_009379655_1_29_6	GCA_009379655_1_29_6	-	64598	.	PFAM:PF05657.10	tail-component	MNASQLIYEKLSALVNNQCYPLFIPEHNPSNPPYIIYQIISTEPDNTLDGMTGHEWANVQIDVYHNDYDDCLSLAAKAINQLDQIKPSIYHGVQYMRDNESGLFRAIIEYGFWQTLEF*	hallmark_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0006	shell	direct	high	356	0.997	GCA_009379655.1_01805
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	5751	6224	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	5752	6225	GCA_009379655_1_29_7	GCA_009379655_1_29_7	-	64598	.	PFAM:PF04883.11	tail-component	MIGKIEVLGLDKLDKQFAKLDDKVKDKALSKALNQALNPIRKDAKFYASVAPEPHTMIVKGGRRVVVQRGLLRSAIRKRKVPKREMGELGGHGVAMGIYVGKGTKQKEYPNYWHFVEYGTSQMPAVPFLRPAFDKNVQVAVNAFAKTLKDEIDKIVK*	hallmark_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0007	shell	direct	high	473	0.998	GCA_009379655.1_01806
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	6208	6549	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	6209	6550	GCA_009379655_1_29_8	GCA_009379655_1_29_8	-	64598	.	PDB:2KZ4_A	Head-tail-adaptor	MKAKLIHSRLKIYRQSASRSATGAVKMNEWEHALTVWGRLIRLSDKDIIAGQAQGSQITARATIRHRTDISHTMRVHCGDQEYEIVGKPLADNKTGREYLTLMLKEVLDDRQN*	hallmark_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0008	shell	direct	high	341	0.997	GCA_009379655.1_01807
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	6586	6870	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	6587	6871	GCA_009379655_1_29_9	GCA_009379655_1_29_9	-	64598	.	PFAM:3JVO_G	Head-Tail-Connector-protein	MTFATLDEVKHHLRYDDTDSDGILQIYLQSAQTAVKNYITDDITDEMLPSLKVATLLLVGYLDDNRNGERGAEFGNFLPAPVRQMLAPYRTPTF*	hallmark_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0009	shell	direct	high	284	0.996	GCA_009379655.1_01808
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	6867	8177	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	6868	8178	GCA_009379655_1_29_10	GCA_009379655_1_29_10	-	64598	.	PDB:3KDR_A	Portal-Protein	MGFFDLFRKKSVNATPAPAWQTLIHEPYTGAWQKNDELKRTDLTHFHAVFACISLIAADIGKLRIQTKSSQNGVLLPTKSRTHAILKKPNRHQSWQQFIESWVSSKLLRGNAYVLKQRDIFGDVWQMYVLNPDRVKVLVSGDGEVFYQISTDKLYGLTDTTVPASEVIHDRMNCFYHPLVGLSPLTACGISVGLGLCIQHTSATLFGNNSRPSGILSVPSDISKETAQKVKSDWQANYSGIKRGGIAVLGSGAKYEPIAMSASDSQAIEQLKMSGQTVCSVFHVPAFKVGMGEIKAGQKVSDLNEIYYSDCLQHYIEAIENLLDEHLDLEKGVECEADLSPLIRMDSTSQMAYLKEGTHSGILSPNEARATLGLPPVVGGESPLMQQQNYSLEALAKRDNSADPFGNAPTPSEPTKSAKAVKPRYRVYATIDKDKS*	hallmark_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0010	shell	direct	high	1310	0.999	GCA_009379655.1_01809
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	8177	8365	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	8178	8366	GCA_009379655_1_29_11	GCA_009379655_1_29_11	-	64598	.	.	hypothetical protein	MQITYLKDAPLGAVGETHDVPEPQARILIILGIAKPAPSQSKADKPKRKTKTTTENSELDLS*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0011	shell	direct	high	188	0.995	GCA_009379655.1_01810
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	8430	9785	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	8431	9786	GCA_009379655_1_29_12	GCA_009379655_1_29_12	-	64598	.	PDB:8ECN_B	Major-Capsid-Protein	MNYQAQLAQILATIQAKQKQIGEIMTKSVTSGHTPSDDDEVQITVLEGEIARLEKNAERLTKLIKSVETAPNPTEIGGENPEQAAASAKGEPIPQNPEQTKSVQVESNLPKGVGIALLIKASSIATKSKGGITTREVLQGWNAPDNVIRAATQKAVIGTTTDDKFGKELIDYANLTGEFIELVRQKTVVDKIAPLMRQVPFNVKIPMQTASGSVGWVGEGKMKPVGNPEFGSMTLSHAKIAGIVLLSDELIRFSNPKADTLVRDDLVATVAQFIDQQFFDPDKTEAAESPASVLNGVTAITATGTTADKIDTDTNTLIAQLVDAGISLEGAVWAMSETRAMQISGMRDALGRIYFEGMNLTGTRSLKGLPVHTSGSLGDKIVLIVPSQILLADDGGVDFSVSAEATINMGTDDAPKMVNLFQNNLTAIRAERFIRWKPRMTKAVGYIKYTG*	hallmark_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0012	shell	direct	high	1355	0.999	GCA_009379655.1_01811
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	9782	10399	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	9783	10400	GCA_009379655_1_29_13	GCA_009379655_1_29_13	-	64598	.	PFAM:PF04586.16	prohead-serine-protease	MTKAYSTLQIKSVTDNDDERIITGIATTPSTDRDDDILEPLGAKFTLPIPLLSHHNHSQPIGEVIQAEVTAGGILITAKIAKIDEEGKLKERIDEAWQSIKSGLIKGLSVGFKIKEYSYIENSWGLHIKEWEWWELSIVTIPANGDAVITSVKQIKEAFSLPLQPTPNPPINPIQPLPTQTTITKATPSNGAVALILPTNGVKLL*	hallmark_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0013	shell	direct	high	617	0.998	GCA_009379655.1_01812
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	10515	10766	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	10516	10767	GCA_009379655_1_29_14	GCA_009379655_1_29_14	-	64598	.	.	hypothetical protein	MKQELYELDDVMSLATLRVEKMDWLVGHLLNSVTGENAMIVGLLADMIELAKDDLQNIDTLCDKLREQDTPEVKGPERLQKVA*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0014	cloud	direct	high	251	0.996	GCA_009379655.1_01813
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	10768	11649	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	10769	11650	GCA_009379655_1_29_15	GCA_009379655_1_29_15	-	64598	.	pfam10547	P22_AR N-terminal domain. This domain was identified by Iyer and colleagues.	MNSVTQNTAISNEVVAVKFYDDTLITLEKDGEHYAAVRPIVENMGLDWAKQTTKLKNPKFNCCLMATVAKDGKIREVLCMPIKKLNGWLFSINPEKVRADIRHIVEQYQEECFTVLHDYWHKGMAVNERAATNPTLSTVKDRNGLVKTCEWFVRVASYLGYDEVWNLVHHRFNINRACELTTEQVGQATEYLQGLLLGVIAQRRGFNPQTPLPLPPMHRADVGKYDNDGVLWTRVLEPDEQIVRTKDIAQLIINEPYIDGETLTAINYASSARLASMLKNPPFLTTLDNAKEV*	mmseqs_cdd	nonviral_gene	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0015	cloud	direct	high	881	0.999	GCA_009379655.1_01814
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	11813	12076	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	11814	12077	GCA_009379655_1_29_16	GCA_009379655_1_29_16	+	64598	.	PFAM:PF16777.4	partition-protein-ATPase	MSYLDTTELLQNQDTWKRSQVRLPNSLYQVVAKYAEDKSMSLNTAIIHLLDIGLVKETERMQTIRELKQALNEANAKTQALENQSGQ*	phrogs_hmm	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0016	shell	direct	high	263	0.996	GCA_009379655.1_01815
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	12165	12842	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	12166	12843	GCA_009379655_1_29_17	GCA_009379655_1_29_17	-	64598	.	cd18722	LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins. Curiously NicB from Pseudomonas putida S16 is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine. This subfamily also includes the uncharacterized CPP15 (plasmid) protein from Campylobacter jejuni. This subfamily belongs to LabA-like PIN domain family which includes Synechococcus elongatus PCC 7942 LabA, human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	MTTAVFIDGAFFIKRLRHYLPTTEHYDAKKMANIAMGMALKHLKLRNKDKIEDDLYRIFFYDCPPLEKKMHNPISGKALDLSKSDEAVFRRELHKELIKKRKFALRLGRLSDYNNGWRLKPRVLSELLKGKKAWGDLMDDDFTIDIMQKGVDMRIGVDISTVTLKMQANRIVLIAGDADFVPAAKLARREGVDFILDAMHQPISDDLFEHIDGLWTTYHTKRKQK*	mmseqs_cdd	nonviral_gene	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0017	cloud	direct	high	677	0.999	GCA_009379655.1_01816
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	12965	14692	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	12966	14693	GCA_009379655_1_29_18	GCA_009379655_1_29_18	-	64598	.	PFAM:PF03354.15	Large-Terminase	MNKSVTPTWTTALPDWQERIVKGESLIPCKPLFTTMSDIALRVFKELALVDVIGCPKIGAVSKAWVFDFVAIIFGAYDPAAKKRLIKEFFLLISKKNSKSTLAAGIMLTALILNERQSCELVIVAPTKEVANNSFSPMQDMIRVDSELSALFNVSAHTKTITHRFTGASLKVIAAESNSLAGVKGAYVLVDELWVFGKRAGAAAMLQEAIGGLASRPEGFVIYLSTMSDEAPAGIFKEKLDYARSVRDGQIDDLRFLPVIYEFPQAYIDSGDYVKPENWYITNPNLGASVDMDYLTDTLKRAKESHDKNTLQTALAKHLNVEIGISLRANRWAGAEFWEGAGRAFSLDELIEKSEVITMGGDGGGLDDLLGCAVVGRLPTPKYIYTDDNNIRHEVKQWWVWVRAWCHPIALERRKQDEPRYRDFETDGDLVIVQNVGDDVAQFADIAKKVYDSGKLDKIGLDPAGADDIVIALESIGIPKDTHMTGVSQGWKLGGYQKVCERKIASGDLTHANQPLMAWCVGNARVKLSGSGVSMSKSESGNGKIDPVIAMLNAVALMSQNPAVPRSDDDVGVYF*	hallmark_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0018	shell	direct	high	1727	0.999	GCA_009379655.1_01817
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	14649	15032	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	14650	15033	GCA_009379655_1_29_19	GCA_009379655_1_29_19	-	64598	.	PFAM:PF11753.7	nucelotide-kinase	MSNDLINHPAHYTSCPSGIECIEITELLPFCLGNCYKYLHRAGLKGDELTDLQKAVFYARRAYLNDEKLTETAQSLIFKVARHQADEKRKILSCFAAAHIKKFYLFLQEHVSKYEQKRNTNMDNRST*	common_virus_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0019	shell	direct	high	383	0.997	GCA_009379655.1_01818
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	15025	15192	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	15026	15193	GCA_009379655_1_29_20	GCA_009379655_1_29_20	-	64598	.	.	hypothetical protein	MKYMNDACDTAELNNPADGQGFVYPVIDGECKIMRYDDFIKEFCFLPKDIRLNDE*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0020	shell	direct	high	167	0.994	GCA_009379655.1_01819
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	15189	15713	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	15190	15714	GCA_009379655_1_29_21	GCA_009379655_1_29_21	-	64598	.	PDB:2CMP_A	Small-Terminase	MAITQKQEAYAKNVASGMDFHTAALKAGCKNHESARKFVADMAKRENVQARIADLKKVQNALGQDSQNNQDNQNNQDDKNNHDEPTATVPDAPQTPKYETPLGFLTAVFNNADGLYTPKERINAAIALLPYTEHKLAQTGKKEDELDNAKNKSENGRFATLSNQADMFGSELLQ*	hallmark_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0021	shell	direct	high	524	0.998	GCA_009379655.1_01820
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	15679	15945	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	15680	15946	GCA_009379655_1_29_22	GCA_009379655_1_29_22	-	64598	.	.	hypothetical protein	MTKQTYKSYATNATKPKPKAKARRGACYNFWAKRADTTPPLVYKKNLIWEENLRFSANERSNKSYIKLHYKEYRKVKHGNHPKAGSVC*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0022	shell	ambiguous	low	97	0.363	GCA_009379655.1_01821
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	16262	16684	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	16263	16685	GCA_009379655_1_29_23	GCA_009379655_1_29_23	-	64598	.	.	hypothetical protein	MTNKIPKDQLIAVAESFAGVSPFADACYRYYFYQDKACHAHLSSCLAVEFAEYLTKIPTKHHQPIINTALIEISYPQKNLSRSTFCAKERACCMGISRRQYYNLHAGEAIDNIIGNITGIAKVVAGKVREQLGINLKLGY*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0023	shell	direct	high	422	0.998	GCA_009379655.1_01822
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	17021	19684	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	17022	19685	GCA_009379655_1_29_24	GCA_009379655_1_29_24	-	64598	.	PFAM:PF08273.11	primase-helicase	MSDKRPPLNFDYIQTQATGHYVSRIFPAVGIKLHGNGKKHQPCPLCGGTDRFRCDDKDGTGSWICNQCGAGTGYTLVRDYTKKDAYETHALMADILGIDGGRQISEADKQAWAKAQAERLSAQKQAKKQARQTAAKTAQNRFNTATPTDTHAYLAKKGVRSHGLRVDDKGNLLIPLYYHNTQTGNITLCNVQSISADGGKLFVKDGLVGGAFYTLGDVLSIDTILICEGYATGASIFEALGSIYPVIITFNADNMVKCASIIRTLYPQHRLIFCADDDKATEIKTGKNTGILAAKEAVKIATGEHISPDFGDDEHTTTGELTDYNDLHAHFGMDVVKAQLVHALNRPRPKVITDTHGGYTLDYLNENFAQIKDIGKVTNKIYDLVNHTEMTKTHFMGLVGKELANAWLFGGKQKSIDRREVQDNTAEQFAAAYGNIFEQYWYIQGTKEVFNFKTYKRQPVDTLRLEFPNEFDAWNKSKSRQKVESDNIWFDPTDKKRPQNGENYINTFKPFVIQPFTAQELGIDDEKFNEHFMMGMCSPVINLIKHLCGNDTHALDWVLNWLAIPLQNLGTKMDTALIVHGHIQGAGKSLFFDRIMRKIYGSYLLTLGQGQLESQYNDWVEGKLFAVFEEIFQGKDRYSHMGMIKQLITGNTVYINKKFMSGWTQDNFVNTVFLSNDMQPLSLDETDRRHVVLYPTAVIPDALRHEIGAAIDDPNQSLIRAFYTYLLLKDPKNQNAHSTAINTEAKAQLTEISIGSHERFYMYWKNGDLEIPYATCLTTDLYHYYVIWCGQNREYAQSSAKVLRYIALREHKKRIRYRYKIPAGNHLKDDTKQGMVYIIGIDEQNQNPHTFGLCISAFRHAIMKAKTHHSMPQESIRSSYENSNPFI*	rep_hall_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0024	shell	direct	high	2663	1.0	GCA_009379655.1_01823
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	19677	20408	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	19678	20409	GCA_009379655_1_29_25	GCA_009379655_1_29_25	-	64598	.	COG3561	Phage anti-repressor protein  [Mobilome: prophages, transposons]. 	MTNLPQIQPHDTLTQAVNARELHAFLQNKDHFATWIKDRIAQYDFQENQDFVTFSENSEKGRPRLEYAITLDMAKELSMVERNEQGKMARRYFIECERVARQVMTAPMPVRPTTPTLSKVDFAVLQTVVRDLSAQMAHPKASEMAIWARLRAVCDVSSIHNIRYGDMWTVQGELSRIGRILRPYADFRKSTEKTLIKRICLGDHNAVWEAIKVMDDTADGYSLFVDDKAFYALECLAMGASHE*	mmseqs_cdd	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0025	shell	direct	high	731	0.999	GCA_009379655.1_01824
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	20483	20707	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	20484	20708	GCA_009379655_1_29_26	GCA_009379655_1_29_26	-	64598	.	PFAM:PF10078.8	transcriptional-repressor	MNDNPVLKAVTHFGGRTEVAKITGVSYMAVKKWEQNGCFPRTEYTGETSYAEKLSQASEGMLLVNDLLSRTNNQ*	phrogs_hmm	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0026	shell	direct	high	224	0.996	GCA_009379655.1_01825
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	20852	21427	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	20853	21428	GCA_009379655_1_29_27	GCA_009379655_1_29_27	+	64598	.	PFAM:PF08667.9	transcriptional-repressor	MSDFAERLQFAIKQAGSNPSKVAEAVNVTAQATQKWKKGQISVDTLTNVIKEIGVDANWLLLGEQANQNQVNNQHGYIGGSVNQSVVNNYASQLTGGDDWLTIINNDMFPAFAIGDCVRIDVKQEAQAGNYVYVDCEGKKMLRKYRPKGYDENGTPYTHLVAENEDYPVIDSRHQAFTVLGVAVEHKRRLV*	phrogs_hmm	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0027	shell	direct	high	575	0.998	GCA_009379655.1_01826
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	21451	21936	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	21452	21937	GCA_009379655_1_29_28	GCA_009379655_1_29_28	+	64598	.	.	hypothetical protein	MSINKTLVMQILTVLSEQTPKRVSVERLGLCDQQTLAKHLMYMAHEDLIDNDADEVVGLDTSGEISHFESCGITSLGISYIGRDDGIHKELHAVNISLDVNELRQLLLDNVAANAEPDQKQKFTNAIASLSRETLVEVCKELIVKGLTAGTVLTWLRNFIP*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0028	shell	direct	high	485	0.998	GCA_009379655.1_01827
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	21916	22236	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	21917	22237	GCA_009379655_1_29_29	GCA_009379655_1_29_29	-	64598	.	.	hypothetical protein	MNKQKVEPYLTLTQSDRPNARFGEVELFLTCQRFSDDEKAFKGSHEYATDGYAIVTSAGYLLFERVSDSTFRFIGFTTVTPKKTDKRYAIFDQEGYYGRFLGNKIP*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0029	shell	direct	high	320	0.997	GCA_009379655.1_01828
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	22406	22597	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	22407	22598	GCA_009379655_1_29_30	GCA_009379655_1_29_30	+	64598	.	.	hypothetical protein	MNTQVNKTDFFPKFLIIAMLASLPFACSKAIDDAFDRQAEIDYQECLNWQADGFDIKCNRGGK*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0030	shell	direct	high	191	0.995	GCA_009379655.1_01829
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	22600	22884	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	22601	22885	GCA_009379655_1_29_31	GCA_009379655_1_29_31	+	64598	.	.	hypothetical protein	MNKQSNPNGVNPIIDALLMRMNELDRFSDDECVLTNKELLPFDVVTSKSGQFGFIGGNVSIGNVITEQFRTIYETEGVAARAYLVKYFGDKQWL*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0031	cloud	direct	high	284	0.996	GCA_009379655.1_01830
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	22875	23171	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	22876	23172	GCA_009379655_1_29_32	GCA_009379655_1_29_32	+	64598	.	.	hypothetical protein	MALTAAKIRRELTKISFSTAHARDAKNNTICHLVTYQRSLASGGEINLSSLFAVYNYLVWLLGHVHEIDDKQVLPSQRLFLADAMAFIFNIYEKQRGV*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0032	shell	direct	high	296	0.997	GCA_009379655.1_01831
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	23171	23407	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	23172	23408	GCA_009379655_1_29_33	GCA_009379655_1_29_33	+	64598	.	.	hypothetical protein	MDRKLFDTEARLFCQQQQELIFNEFCNQVIKLLTKNPQGLTIANVQTCIGMSYKTAMRVLALVAVEKDGKFYPDGGIR*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0033	shell	direct	high	236	0.996	GCA_009379655.1_01832
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	23422	23922	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	23423	23923	GCA_009379655_1_29_34	GCA_009379655_1_29_34	+	64598	.	.	hypothetical protein	MIKQTTFKAGDKIYHPLVSRDIRVLTKPAGKSEKLLVAKEDKDNIFIFEESGCEYRELHRYSSIFHATEENCELLSKLYGEEFEKPKSNPTPDTIVKKMLDDGYAYVICSILLPRGVVKDIIRGYGGGVFLGEYDNYYRDEIIPLDAYTGKVIVDYKDGKPVLGDE*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0034	shell	direct	high	500	0.998	GCA_009379655.1_01833
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	23928	24104	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	23929	24105	GCA_009379655_1_29_35	GCA_009379655_1_29_35	+	64598	.	.	hypothetical protein	MRFNISNFTSALLYSLLGALVMLTISALSVYLVGTTIIATISFIICFGFAITAGFLED*	.	hypothetical_protein	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0035	shell	direct	high	176	0.994	GCA_009379655.1_01834
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	24105	24284	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	24106	24285	GCA_009379655_1_29_36	GCA_009379655_1_29_36	+	64598	.	pfam05930	Prophage CP4-57 regulatory protein (AlpA). This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant, overproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins.	MNMSSLKRLRLPQVIEKTGWQRATIYKKIKEGEFIPPKKDGRISYWLEQDIDNWILTRA*	mmseqs_cdd	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0036	shell	direct	moderate	173	0.961	GCA_009379655.1_01835
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	24309	25481	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	24310	25482	GCA_009379655_1_29_37	GCA_009379655_1_29_37	-	64598	.	PDB:1Z19_B	Integrase	MARTTKPLTNTQIDKAKPKEKVYRLYDGNGLVMNITPNGGKYWYLQYKHPNSGKAQMHKLGNYPALSLADAREKSAFYHSLLAKNIDPKQHDLQQNAQNDLLTVYQSWAKTKDYTEKHHAKNNNYVRDTIAIIGNKSIADISVPDLVRVLKPVESIGQYEKLKKWRSLLNQIFAYAVASGHIEHNPALNLRGAFGTGEVRHNPAILDEKRLAELVRAIDEYHGSIVTRQALRYALLTFARPGEVRHLKWQDIHDDFWHYQPSKTRKKTGVEIITPLSSQALQIIHARQAIKCSDFVFPSVTGNTRPLSENTLNQALRRMGFDSSEQTTHGFRAIARTLLEEKFKYDYRMIEMQLGHLVRDSNGRAYNRVTWLDERKEMMQKWADYLDSIK*	common_virus_hmm	common_virus	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0037	shell	direct	high	1172	0.999	GCA_009379655.1_01836
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	CDS	26100	26423	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	26101	26424	GCA_009379655_1_29_38	GCA_009379655_1_29_38	-	64598	.	COG0607	Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]. 	MITELKITEFTPTKDKVIWDVRDAEQYQEGHIEHAVNHPLSTIDKTLLDATKGDIYVLCGGGTKAQKAAKLINELDNDRRIIHLTGGTRGAIASGMAIISEQPLERN*	mmseqs_cdd	nonviral_gene	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_CDS_0038	persistent	direct	high	323	0.997	GCA_009379655.1_01840
GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote	cenote	CDS	1	276	GCA_009379655.1	RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655.1_RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655_1_8	GCA_009379655_1_8	2	277	GCA_009379655_1_8_1	GCA_009379655_1_8_1	-	5583	.	PFAM:PF06805.11	tail-assembly-protein-I	MKTIILHGILAKKFGKSFDLDVKTAKEACHALACQIPAFYEFMMNAEKQGIKFAIFNGEKRTQKTNIGEKQLDDITTASHIHIMPRVAGSGG	hallmark_hmm	common_virus	NaN	.	0	5583	GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote	cenote	CDS	376	558	GCA_009379655.1	RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655.1_RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655_1_8	GCA_009379655_1_8	377	559	GCA_009379655_1_8_2	GCA_009379655_1_8_2	+	5583	.	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family [General function prediction only]. 	MNSRQMIKLITDDGWYEVAVRGSHHHYKHPTKQGKVTIPHPKSDLPIGTVKQILKQAGLK*	mmseqs_cdd	nonviral_gene	NaN	.	0	5583	GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote_CDS_0002	shell	direct	high	182	0.995	GCA_009379655.1_00217
GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote	cenote	CDS	591	998	GCA_009379655.1	RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655.1_RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655_1_8	GCA_009379655_1_8	592	999	GCA_009379655_1_8_3	GCA_009379655_1_8_3	+	5583	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MLYPIAIEKPVSTNECYGVIVPDIVGCFSAGDTVDEAVKNAYEAIVLHLDMLADDGEDIPQATDIAHHQENPDYQGMIWAVVDIDLSAYMGKSEKINVTLPSRLIVKIDEKVKAHKSLYKSRSNYLAQLASRDLA*	mmseqs_cdd	nonviral_gene	NaN	.	0	5583	GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote_CDS_0003	shell	direct	high	407	0.998	GCA_009379655.1_00218
GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote	cenote	CDS	990	1772	GCA_009379655.1	RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655.1_RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655_1_8	GCA_009379655_1_8	991	1773	GCA_009379655_1_8_4	GCA_009379655_1_8_4	-	5583	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MRLTKNLQQQIITHAQDVYPNECCGVIIDGQYHPCTNIAPNPANAFEIDTAEWVVLSNRGDIEAIVHSHPNGEPLPSEVDKVQMGLHDIDWVIVGLGHTPTGATYCDIKRHKPTTYQSPLLGREYHHGVQDCYSLVQDYYSRELDITLPSFARSDDWWENPNHEPLYENNFTKAGFIKVQDKNDLQKHDVLLCRVGRTHHVNHALIWLGDDGALTSEKTPDCVGNALILHHPHGGLSVREIYGDNWQRRTAMVVRHQSLG*	mmseqs_cdd	common_virus	NaN	.	0	5583	GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote_CDS_0004	shell	direct	high	782	0.999	GCA_009379655.1_00219
GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote	cenote	CDS	2155	2358	GCA_009379655.1	RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655.1_RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655_1_8	GCA_009379655_1_8	2156	2359	GCA_009379655_1_8_5	GCA_009379655_1_8_5	+	5583	.	.	hypothetical protein	MADKASPQARKKATANYFDKSLARIGLVISHTEPHVLDALNQIMAHKDCSKAMAIKIALVEYAKTLD*	.	hypothetical_protein	NaN	.	0	5583	GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote_CDS_0005	shell	direct	high	203	0.995	GCA_009379655.1_00221
GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote	cenote	CDS	2355	3020	GCA_009379655.1	RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655.1_RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655_1_8	GCA_009379655_1_8	2356	3021	GCA_009379655_1_8_6	GCA_009379655_1_8_6	-	5583	.	PFAM:PF05100.11	minor-tail-protein-	MSFNTDIQQTTVQGFITLYELDARKLGGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGRASTPTLIIHNDIGGIPQALRFLCLKFGDFVGAKLKVIHTLAEYLTSADEQNFKIQNWYIEQKTSQTNVTTTFELSNPVDFEGQKIPVRQITSYCHWAVCGRYRGEECGYIGTNRFTTDGKPTDNPALDRCGGRMTECKLRDNEQRFGGFPAAGLVG*	hallmark_hmm	common_virus	NaN	.	0	5583	GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote_CDS_0006	shell	direct	high	665	0.998	GCA_009379655.1_00222
GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote	cenote	CDS	3119	3511	GCA_009379655.1	RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655.1_RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655_1_8	GCA_009379655_1_8	3120	3512	GCA_009379655_1_8_7	GCA_009379655_1_8_7	-	5583	.	.	hypothetical protein	MSETTLTELSRTEAQVLQSFIAQVDYWKNQHGDKAATIEVIYYPEDDGFEVANGEPNNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTEFSLSYKNDRYGVRAALASEATDKADDGAEQAEQDK*	.	hypothetical_protein	NaN	.	0	5583	GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote_CDS_0007	persistent	direct	high	392	0.997	GCA_009379655.1_00223
GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote	cenote	CDS	3569	4018	GCA_009379655.1	RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655.1_RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655_1_8	GCA_009379655_1_8	3570	4019	GCA_009379655_1_8_8	GCA_009379655_1_8_8	-	5583	.	PFAM:PF05708.11	enoyl-CoA-hydratase/carnithine-racemase-like	MHRKVYLALYKGRADKFSYRFYDAVTRFFTRGQYSHCEIAVHIHNNIYHCYSSSIRNGGVRRKSMMLDDKWDLIKLDIDESQIRHFYGATKGSGYDLLGALGVVLGLRQHPDKYFCSEWCFEAITNKQNGWRFSPNDLYAIKSILTRRH*	phrogs_hmm	hypothetical_protein	NaN	.	0	5583	GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote_CDS_0008	shell	direct	high	449	0.998	GCA_009379655.1_00224
GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote	cenote	CDS	4011	4571	GCA_009379655.1	RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655.1_RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655_1_8	GCA_009379655_1_8	4012	4572	GCA_009379655_1_8_9	GCA_009379655_1_8_9	-	5583	.	PFAM:PF14301.5	tail-protein	MHYIKLIDDKGHFEFIHEDFLYLYSDTADFIAIAQEDYQTYVQSVNQELIYQHGKIISLTSQISADEIKQTNQELVWSDIKDKRTKHAHSGVYVASVDKWFHTDKSSRIQYLALITLPSLPDNLQWKTMDNSFITLTRPLLTELTSAMLIKEQQDFMNAERHKQLMMRVDNPLDYDYSDGWSAIYA*	phrogs_hmm	common_virus	NaN	.	0	5583	GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote_CDS_0009	shell	direct	high	560	0.998	GCA_009379655.1_00225
GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote	cenote	CDS	4571	5581	GCA_009379655.1	RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655.1_RCKT01000017.1	GCA_009379655.1|RCKT01000017.1	GCA_009379655_1_8	GCA_009379655_1_8	4572	5582	GCA_009379655_1_8_10	GCA_009379655_1_8_10	-	5583	.	PFAM:PF05939.12	minor-tail-protein	INGIAFDGTQDITLPTPTANVSWSAISNKPANFTPSAHRHAIGDITNLQRELDNKASRNHSHTWNSITNKPANFTPSAHRHAIGDITNLQRELDNKASRNHSHTWNSITDKPTTLTGYGITDAMRTDTDSETTGLISINRADSYIQGKQGSVRRWYVGSGSSSNHNVQLSNLTHNTQLELTNNRITSNKPLYVGTRRVLLEGDETASTTVQVTNHPTITLTLGATLEMTTFVYSNGRIVHRLNYKNMTKPALTALTSSSSRTKTLTVNLPTAMPRQVVQVNAHFYDSGYIGYASSLLAVWKLSETTNSTVPLKISDTNSSSNFSGFSDLVVTIEGF*	hallmark_hmm	common_virus	NaN	.	0	5583	GCA_009379655.1|RCKT01000017.1@region_1_5583@tool_cenote_CDS_0010	shell	direct	moderate	642	0.635	GCA_009379655.1_00226
GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote	cenote	CDS	1	276	GCA_009379655.1	RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655.1_RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655_1_9	GCA_009379655_1_9	2	277	GCA_009379655_1_9_1	GCA_009379655_1_9_1	-	4741	.	PFAM:PF06805.11	tail-assembly-protein-I	MKTVILHGILAKKFGKSFDLDVKTAKEACHALACQIPAFYAFMMNAEKQGIKFAIFNGEKRTQKTNIGEKQLDDITTASHIHIMPRVAGSGG	hallmark_hmm	common_virus	NaN	.	0	4741	GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote	cenote	CDS	342	1157	GCA_009379655.1	RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655.1_RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655_1_9	GCA_009379655_1_9	343	1158	GCA_009379655_1_9_2	GCA_009379655_1_9_2	-	4741	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MGGFLLEKFMRLTKTIKEAIHAHAKSAYPNECCGLIIDGQYYPCDNVAPNPAEHFEIDYLNMVEMQEYHGEIQAIVHSHPNGNAEPSEVDRVQMGIHGIDWVICAFGYHAGGKEYFDVKCHKPKAYQAPLLGREYHHGVQDCYSLVQDYYSRELDITLPSFARSDDWWENPNHEPLYENNFTKAGFIKVQDKNDLQKHDVILCRVGRTHHVNHALIYVGDGKLKSETMPDCVGNALILHHPHGSLSVREIYGDNWQRRTAMVVRHERLNNG*	mmseqs_cdd	common_virus	NaN	.	0	4741	GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote_CDS_0002	shell	direct	high	815	0.999	GCA_009379655.1_00227
GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote	cenote	CDS	1188	1598	GCA_009379655.1	RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655.1_RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655_1_9	GCA_009379655_1_9	1189	1599	GCA_009379655_1_9_3	GCA_009379655_1_9_3	-	4741	.	PFAM:PF11008.7	lipoprotein	MKSIIALTLLFVLTACSTKPIVNYTETVSLVDNNVTSDRSTIVVRRDMGFMGSGCPVEIYLNGVKYARLQSSQSINIHTTAGTHILSAKFTGRGFCQDRLNETEVTIQKNESKYYRLAMNANGDFHIFPTLSTPIQ*	phrogs_hmm	hypothetical_protein	NaN	.	0	4741	GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote_CDS_0003	shell	direct	high	410	0.998	GCA_009379655.1_00228
GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote	cenote	CDS	1659	2327	GCA_009379655.1	RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655.1_RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655_1_9	GCA_009379655_1_9	1660	2328	GCA_009379655_1_9_4	GCA_009379655_1_9_4	-	4741	.	PFAM:PF05100.11	minor-tail-protein-	MSFNTDIQQTTVQGFITLYELDARKLGGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGRASTPKLSIGDKINGIQGAVSALCRLYDDFARAKLTVTHTLQAYLDSHDAQNYRQQEWYIEQKVSENPSLGIVEFELSNPVDFEGQKIPVRQITTYCNEAVCGRYRGEICGYTGTARFTHDGKPTDDPTLDRCSGLLAHCKLRDNEGSFCGFPAAGLV*	hallmark_hmm	common_virus	NaN	.	0	4741	GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote_CDS_0004	shell	direct	high	668	0.999	GCA_009379655.1_00229
GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote	cenote	CDS	2426	2818	GCA_009379655.1	RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655.1_RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655_1_9	GCA_009379655_1_9	2427	2819	GCA_009379655_1_9_5	GCA_009379655_1_9_5	-	4741	.	.	hypothetical protein	MSETTLTELSRTEAQVLQSFIAQVDFWKNQHGDKAATIEVIYYPEDDGFEVANGEPNNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTEFSLSYKNDRYGVRAALASEATDKADDGAEQAEQDK*	.	hypothetical_protein	NaN	.	0	4741	GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote_CDS_0005	persistent	direct	high	392	0.997	GCA_009379655.1_00230
GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote	cenote	CDS	2875	3324	GCA_009379655.1	RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655.1_RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655_1_9	GCA_009379655_1_9	2876	3325	GCA_009379655_1_9_6	GCA_009379655_1_9_6	-	4741	.	PFAM:PF05708.11	enoyl-CoA-hydratase/carnithine-racemase-like	MHRKIYLALYKGRADKFSYRFYDAVTRFFTRGQYSHCEIAVHIHNNIYQCYSSSIRDGGVRRKSMMLDDKWDLIKLDIDESQIRHFYGATKGSGYDLLGALGVVLGLRQHPDKYFCSEWCFEAITNKQNGWRFSPNDLYAIKSILTRRH*	phrogs_hmm	hypothetical_protein	NaN	.	0	4741	GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote_CDS_0006	shell	direct	high	449	0.998	GCA_009379655.1_00231
GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote	cenote	CDS	3317	3883	GCA_009379655.1	RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655.1_RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655_1_9	GCA_009379655_1_9	3318	3884	GCA_009379655_1_9_7	GCA_009379655_1_9_7	-	4741	.	PFAM:PF14301.5	tail-protein	MHYINLIDDSGRFDFIHGDFLSIYADTSSFIKITDEDYQTYLAYSTSPYELKYVEGKITYTPQDTDHIALKKARQAWVWEDIKQKRHTNTRGGVYIKSVGKWFHNDDSSRTQYLALQVLPKLPDHLMWKTMDNEFVPMTKDLLNEIAMTMLTEEQADFANAEKHRLAMLESDNPLEYDYSDGWSAIYA*	phrogs_hmm	common_virus	NaN	.	0	4741	GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote_CDS_0007	shell	direct	high	566	0.998	GCA_009379655.1_00232
GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote	cenote	CDS	3885	4739	GCA_009379655.1	RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655.1_RCKT01000018.1	GCA_009379655.1|RCKT01000018.1	GCA_009379655_1_9	GCA_009379655_1_9	3886	4740	GCA_009379655_1_9_8	GCA_009379655_1_9_8	-	4741	.	PFAM:PF05939.12	minor-tail-protein	INGIAFDGTQDITLPTPTANVSWSAISNKPANFTPSAHRHAISDITNLQRELDNKAPRNHSHTWNSITNKPANFTPSAHTHQWSNISNVPSATLNNAGIVQLSNSTNGVRQTIAATEFALNEVRKLINSSSRRGSITGVLNRQSHRYFYQRRHGTSSTDAVYSDIDTFTFPDGRIVYLVRLEGIKPAFFDVNTTSVGGSDHTPAKIINLPTAMPNKIISAIPQITSSSLGNTLSSCIVGWDWTYNIDPISGNTRSKSQVRIQFSGYQGNTTNNKIDLSIIVEGY*	hallmark_hmm	common_virus	NaN	.	0	4741	GCA_009379655.1|RCKT01000018.1@region_1_4741@tool_cenote_CDS_0008	shell	ambiguous	low	270	0.316	GCA_009379655.1_00233
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	tRNA	25891	25964	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	25892	25965	tRNA-Pro	tRNA-Pro	-	64598	.	tRNAscan-SE score: 77.8	Pro	NA	tRNAscan-SE	.	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_tRNA_0003	.	.	.	.	.	.
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	tRNA	25760	25833	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	25761	25834	tRNA-Arg	tRNA-Arg	-	64598	.	tRNAscan-SE score: 84.1	Arg	NA	tRNAscan-SE	.	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote	cenote	tRNA	25663	25738	GCA_009379655.1	RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655.1_RCKT01000009.1	GCA_009379655.1|RCKT01000009.1	GCA_009379655_1_29	GCA_009379655_1_29@C0	25664	25739	tRNA-His	tRNA-His	-	64598	.	tRNAscan-SE score: 67.2	His	NA	tRNAscan-SE	.	C0	26424.0	0	26424	GCA_009379655.1|RCKT01000009.1@region_1_26424@tool_cenote_tRNA_0001	.	.	.	.	.	.