core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	2	1132	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	3	1133	GCA_009379685_1_13_1	GCA_009379685_1_13_1	+	245424	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	ATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQTPSRQSTSTANTNSATHKVSAGESLTAIARKYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKTANTTMANTSSSPSVNKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQQTSQATQSTKNNQSTQSTATHRVQSGESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKAESSTPSRLGNTKNNSTRTPANTNIGITENYTVRSGDSLTMLSNRFGVAIGDLATANGLASNANLRIGQTLKVPKLTTTYTVKAGDGLIALARRYGISTQELAKMNNLEPTADLRIGQVLTVPNK*	common_virus_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0001	shell	direct	moderate	1085	0.959	GCA_009379685.1_00743
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	1290	3122	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	1291	3123	GCA_009379685_1_13_2	GCA_009379685_1_13_2	-	245424	.	COG1274	Phosphoenolpyruvate carboxykinase, GTP-dependent [Energy production and conversion]. 	MTAKITAPDFVRHQALIHWVAEIAALTKPAAIEWCDGSEEENQRLIDLMIKNGTMIKLNEDKHPNSYLAFSDPTDVARVEDRTYICSKEEIDAGATNNWVEPSQMRTKLNDLFDGCMAGRTMYVVPFSMGPLGSHIAHIGIEITDSPYVVVSMRKMARMGKEVYDVLGADGEYVPCVHTVGSPLTEGQKDVAWPCNDDKYIVHFPETREIWSYGSGYGGNALLGKKCLALRIASAMGREQGWLAEHMLILGVTNPQGKKHYIAAAFPSACGKTNFAMLIPPAGYEGWKVETVGDDIAWIKPSEDGKLYAINPEAGFFGVAPGTNTKTNSNCMSTLGSDVIYTNVAVTDDGEVWWEGKTKETPANLTNWKREPHTGAERAAHANARFTVSAKQCPSIDPQWENPEGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAATMGSETTAAATGQQGVVRRDPFAMLPFTGYNMADYFNHWLQMGENLGKKAKAAGNQLPKMFKVNWFRRDTNGDFVWPGFGQNMRVLQWIIERCEGTANAVRTPIGLVPTYDDINWDQSDFTKAQFELVTSQDKDAWIKELESHAELFDKLGERMPTALKAHNAKLKADIEQA*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0002	persistent	direct	high	1832	0.999	GCA_009379685.1_00744
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	3420	4838	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	3421	4839	GCA_009379685_1_13_3	GCA_009379685_1_13_3	+	245424	.	PDB:3BH0_A	Helicase-ATPase	MAKAKSSYICQNCGAIYGKWAGQCTDCGEWNTLVEAPNTSLPHHHKSKTTTAPRKTANYAGAVSAVMTLDHVGVTLETRMPTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGDSLSGSALYITGEESLSQVAMRAVRLGLPTDRLRVLAETNVDTICAALTTEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDSRFRMIRAIKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIHTSGMDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPVRLCVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRANAPAANHPQFKNIQIIAVDRLDEAIYQAFEINAG*	rep_hall_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0003	persistent	direct	high	1418	0.999	GCA_009379685.1_00745
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	4880	5599	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	4881	5600	GCA_009379685_1_13_4	GCA_009379685_1_13_4	-	245424	.	COG1118	ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. 	MSIKIQNIHKTFGDFVALGEISIDISTGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYFDSIDVTDIPVQHRGIGFVFQQYALFRHQTVAQNIAFGLTLLPRNTRPSANTIDRRVDELLDLVQLSHTKTRYPHELSGGQRQRVALARALATEPKLLLLDEPFGALDAKVRKSLRDSLKDIQREIGITSILVTHDQEEAQAISDKIVIMNHGQIEQIGTPSKLFAQPSSDFVVDFLGL*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0004	persistent	direct	high	719	0.999	GCA_009379685.1_00746
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	5692	6531	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	5693	6532	GCA_009379685_1_13_5	GCA_009379685_1_13_5	-	245424	.	COG4208	ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. 	MSHTSSYSYQKNPATRDKPWVRWSLIGIAVVFMGVMLVVPLVSVFYEALKEGWQAYQAALLEPDALASIKLTLITAAIILPINTIIGVALAYLITRHQFRGKFVITTLLDLPFAVSPVVAGLMFVLVFGANTRLGGYLESMGIQVIFATTGIVLATLFVTFAFIARELIPLMQAQGDSEEQAALTLGANGWQMFWKVTLPNIKWALLYGIILTNARAMGEFGAVSVVSGHIRGETNTVPLMIEIAYNEYAFTLAFALSSLLALLALITLVAQGLMSHKK*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0005	persistent	direct	high	839	0.999	GCA_009379685.1_00747
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	6576	7454	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	6577	7455	GCA_009379685_1_13_6	GCA_009379685_1_13_6	-	245424	.	TIGR02139	sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]	MLNQPIPLKNRARRVMPFFGLSMGISIFALGLLVILPFLMMILTTLQMSFDDIMQTIREPQVFAAIKLSLSMAMLATLTNLIFGTLAAWVLVRYEFWGKSFLNALVDLPFALPTAVTGIALATLYAPNGLFGQWFTHLGILLFNEPIKIAFTPIGIWLALVVVSFPFIVRAVQPVLAELSVEFEEAAAVMGAGRLTTFCRVILPEISPAMLIGAGMMFARATGEYGSVIFIAGNIPMQSEILPLIIVSKLEQFDVAGAACVSLFMLLISLVFLFTMNFIQWKLSARLGAKTN*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0006	persistent	direct	high	878	0.999	GCA_009379685.1_00748
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	7804	8244	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	7805	8245	GCA_009379685_1_13_7	GCA_009379685_1_13_7	+	245424	.	.	hypothetical protein	MMMKNKWMRGLAILVLSLPTVTYAKTAAPKASEAPEVSLTQEEQMAIDFCDFSAYGVMHIAGDHQGGATKSEALTNHDKRMAELKDLIDLDPETATMLDKYWKGAIDRIFQESVQKTDAEKQAFVMGVGESSFYSCLDQVLKTPKN*	.	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0007	persistent	direct	high	440	0.998	GCA_009379685.1_00749
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	8275	9450	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	8276	9451	GCA_009379685_1_13_8	GCA_009379685_1_13_8	+	245424	.	PDB:1OYW_A	ATP-dependent-DNA-helicase	MTETTVKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTSALKQILANDSVKKTIIFANRKDQVKRLYDYLRRHHKVTMLSGDVAQQKRERYLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDAFNLPALERHIDQKFKLNQFEFLDEHK*	common_virus_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0008	persistent	direct	high	1175	0.999	GCA_009379685.1_00750
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	9464	10639	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	9465	10640	GCA_009379685_1_13_9	GCA_009379685_1_13_9	+	245424	.	COG0635	Coproporphyrinogen III oxidase or related Fe-S oxidoreductase [Coenzyme transport and metabolism]. 	MYPDLLDPAHIPLSLYIHMPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIGGGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTIGINRLSIGVQSFDHNALTVLGRIHNPDQASNAIRAARIAGFDRVNADLMYGLPNQNPSKAVNDIQTAIDAGATHLSWYQLTIEPNTTFYCTPPQLPDEEIMAEIETLGQSVLTKHGFYNYEVSAWHGPNDAPCQHNLNYWQFGDYLAIGAGAHGKLTLKNHPDYQDGIYRYQKSRQPKDYLAFEDAPKMVNFERISDDNLPFEFMMNALRLKDGVSTDVFETRTGLLISTIDNEMLPLQHQGLMVLDPLRIAPTRLGFRYVNYLVSQFI*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0009	persistent	direct	high	1176	1.0	GCA_009379685.1_00751
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	10721	10861	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	10722	10862	GCA_009379685_1_13_10	GCA_009379685_1_13_10	-	245424	.	COG5510	Predicted small secreted protein  [Function unknown]. 	MKKVLVASIAAVVVLTGCNAIKGFGKDVSKAGEAVSDTAQKVEKKI*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0010	persistent	direct	high	140	0.993	GCA_009379685.1_00752
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	11109	11654	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	11110	11655	GCA_009379685_1_13_11	GCA_009379685_1_13_11	+	245424	.	COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]. 	MSQFSDALIHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEEVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQLGFVGDIGQSVGYHKPTSR*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0011	persistent	direct	high	545	0.998	GCA_009379685.1_00753
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	11770	11985	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	11771	11986	GCA_009379685_1_13_12	GCA_009379685_1_13_12	-	245424	.	.	hypothetical protein	MTDSTTSPARQKATNTYRQKALANIALVISHTEPHVLDALNQIMAHKDCSKAMAIKVALVEYANTLSQTSR*	.	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0012	shell	direct	high	215	0.995	GCA_009379685.1_00754
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	12390	12680	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	12391	12681	GCA_009379685_1_13_13	GCA_009379685_1_13_13	-	245424	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MALECLDVHFSSLVADGEEIPLPTNFDAHTQNSQFDGMMWAWVDVDLSKYDVKNHKINITLPNHLIAKIDEKVAAHKSLYKSRSNYLAQLAMADLA*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0013	shell	direct	high	290	0.997	GCA_009379685.1_00755
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	13005	13202	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	13006	13203	GCA_009379685_1_13_14	GCA_009379685_1_13_14	-	245424	.	PFAM:PF16777.4	transcriptional-regulator	MPKIVANPKTRAQIQKDSDARRGVKPIGFKVPIEFAELLDELAKQSGKTKNIIIMEAVELWAKQL*	phrogs_hmm	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0014	persistent	direct	high	197	0.995	GCA_009379685.1_00756
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	13779	14216	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	13780	14217	GCA_009379685_1_13_15	GCA_009379685_1_13_15	+	245424	.	6AF2_A	HIT domain-containing protein	MFQLHPTLAKDTFLVGDFPLSTVRLMNDCQFPWLILVPRVSGIKEIYELSAADQVQFLRESSWVSSQMAKIFGADKMNVAALGNQVLQLHFHHIVRYQNDAAWPNPVWGHEAMPYTQEVLSHMQQTLMMALRGHHQMPFDWKMDV*	hhsuite_tools	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0015	persistent	direct	high	437	0.998	GCA_009379685.1_00757
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	14368	15030	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	14369	15031	GCA_009379685_1_13_16	GCA_009379685_1_13_16	+	245424	.	COG0352	Thiamine monophosphate synthase [Coenzyme transport and metabolism]. 	MTLQSIDKVPKLYLLTNDDELTTLLDKLERVFDTGAVSLLQVRRKSTLKLYDLATVYREAEMIVSLANDYDIKVVMNDNLELASHFGTGLHLGQRDGSVRVAREILGDHVVIGRTCHTDIALFKEAKREGATYGAMGTAFASITKPRAKIISKDILKKACEFDFPLCVIGGIALENIHQLRDELNGAPIDYIAVTADIMGHSVDTIADKCLAWQHKLNTW*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0016	persistent	direct	high	662	0.998	GCA_009379685.1_00758
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	15032	18589	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	15033	18590	GCA_009379685_1_13_17	GCA_009379685_1_13_17	+	245424	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MMIETLKPKLDLPTKANFKTTLPLLGGADLSFWLALAAKSEERLIVMIANHQNELNQLDTELSFFGIDAHVFPDWEILAYDQLSVHQDIVSERIALLTRMPTTGVLLVSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFRLDLFDDDIETIKFFDPDSQRTLSDNDLAQLKKDAQAGMNTHHAQKLPSSAKITEFRLLPAREFPLEEGKEMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQALKAYPRVIINTNHDTAKIGAMASLPPPILPINHQAAKPLSELLSFIKSGQVPILLVAESAGRREIILELLKDKVAVKVVDNYQEFLNNLDDFDADCIALSVAPIERGLWLRDETGGLCIISETQIFGRQVLQTRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVAMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATNAIKQGKTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRTEMIDRFGTLPTQTQNLFAVHRIRIRAKALGITKIDATQTTISIEFRADTPIDGLAIIKLIQSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESTKTA*	common_virus_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0017	persistent	direct	high	3554	0.999	GCA_009379685.1_00759
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	18586	18855	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	18587	18856	GCA_009379685_1_13_18	GCA_009379685_1_13_18	-	245424	.	.	hypothetical protein	MPMSIPTKVTVGYTQRRLFMVSMTVGLISLSGCQHIQVTKSPIPIIIHSHTKSPSQPKPTPTDAVPTKNRPISPPTQKSNTIFILEDWF*	.	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0018	persistent	ambiguous	low	5	0.019	GCA_009379685.1_00759
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	18855	20117	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	18856	20118	GCA_009379685_1_13_19	GCA_009379685_1_13_19	-	245424	.	TIGR02800	tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MKSPITKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLSLAGLGTTHQNLPQHTQANGDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTVNGSIITPTFSPDGLSIAYSVQTKNNLPLIYIVPVSGGTPKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHANHLDTLTTLNGAENAPNYLADASGFIYTADKGTRRQSLYRYDFGTMHSTQIASYATNPRLSPDGSKLVYLSGGQIIIANTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRTIPTSGTVRDPIWSK*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0019	persistent	direct	high	1262	0.999	GCA_009379685.1_00760
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	20134	20928	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	20135	20929	GCA_009379685_1_13_20	GCA_009379685_1_13_20	-	245424	.	4G7X_B	Putative uncharacterized protein, TolA protein	MRLSDNHPTVNFDKSALILPILASVLLHTVIIIAVAAPLITPPTKPNTTIQTALVGQEAFNRAKTALSNHHANQNKPTATNTSSTITANDNALMQAQNQHRYHPQVSTSATTTQAYHPPPNSAPFESNSPNIQNQPTNAHAKLAEYSNHVSDLEQSNHTESTPSRAQINAAITSVKHRIEAIWQRYPKQPNQTITFQVNMNQQGDVTSIQFGGGHPDLRESVEAAVYAAAPFYELGGMRDSIRLQFTTEQLIMDNNQTTNEPNH*	hhsuite_tools	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0020	persistent	direct	high	794	0.999	GCA_009379685.1_00761
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	20959	21393	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	20960	21394	GCA_009379685_1_13_21	GCA_009379685_1_13_21	-	245424	.	TIGR02801	TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MVTSNRFARRQRPLNSDMNVVPYIDVMLVLLVIFIVTAPMLATGIEVSLPKEQTKPITQADKLPVIVSIQADGNLYVSHKNAIDVPITPDKLDTLLRQMHRDNTDLQVMVNADADNAYSRIMQIMALIQNVGITQVSLLSESVQ*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0021	persistent	direct	high	434	0.998	GCA_009379685.1_00762
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	21419	22108	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	21420	22109	GCA_009379685_1_13_22	GCA_009379685_1_13_22	-	245424	.	TIGR02796	TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MNESISLISLVIEASVVVKLVMAILLLLSTISWVLIFHLGTKIGGAAKFDERFERWFWTDDIDHQLSVVQAESERAGLELIFYTGFYDQNHQDQDSSLSDDKKVQIVERRLRMALGSEQVHLEKGLSTLATIGSVSPYIGLFGTVWGIMNAFIGLGQTESVGLATVAPSIAEALIATALGLFVAIPATMAYNHFTTKSNTLYENRSLFCEGLISALVTNLAKKNTASTL*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0022	persistent	direct	high	689	0.999	GCA_009379685.1_00763
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	22385	26557	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	22386	26558	GCA_009379685_1_13_23	GCA_009379685_1_13_23	+	245424	.	PDB:5XDR_A	Replicative-polyprotein	MHSTDNLPVLAKDRHYLNKLKQKMNSTTGDLKTKCKIRYDAIYERSAEQVANRMDSIPKNLSEKLNHDLPVTAEADTLIQAIRDHQVVIIAGETGSGKTTQLPKLAMMAGRGITGQIGHTQPRRLAARSVAMRIAEELGEPLGQTVSFKIRFTEEGGKHSIVKLMTDGILLAELGSDKFLANYDTIIIDEAHERSLNIDFIMGYLKRLLPKRPDLKVIITSATLDTQRFSDYFAVHGKPAPVYIVEGRSYPVEVRYRPLTDTIVSSQDDDAFDDIEDNLPRALTAAVNECFEDARTKGHPDQADILIFAATEAEIRELQEVLMLYAPAHTEILPLFARQSYGEQQKIFAPSGKGRRIIIATNVAETALTVPNIRYVIDLGFARISRYNYRSRIQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEEDFNSRPEFTEPEILRTNLASVILQMERLQLGDVNAFDFITPPDLRLVNDGRKLLIELGALDDKSFTKTRAKKGRTQLSSLTKIGQQMAKMPIDPRLARMLVAGDAFDCLADILIIVSALAVQDVRERPINKHAQADQKHALFRKEDSDFLFYLELFAALFDQHSTNDNQALSSNARRNFAKKHYLSYARIREWQKTHRQLSEMMAEMGFEINKQKNHQNDVKIDTKKGVRLSLKPGTSHQKSIKQALVGAKALKNDIDNKTSIHYANIHRALLSALLSFVAHKTDTVGEYLMARSQKARIFPASTLHKKGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPNLLKYHYFEPHWSKKAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDALVANQYGMQMKFLADNANKIKDIERIEDKLRRRDLLVDEESLYQFYDAKIPNHIASRKSFEEFYHDAENKTPNFLHFSDEDVLNEAVDDSREFPESWHLGGVRLPLSYVFDPAADNDGVTVHVPIKALAQVDPVALLWGISGWRYELVLQLLKTLPKEIRRQIVPIPDTCQKIFHQLDASSKMGLLDQLVAALKTLGVQAHTQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARHRKASVQSIAIEQGVHHHFPNHFNFVKNKHTSGIVMQEFSALKADAAQSAVFIATFTEMNAALAEHKKGVLTLIKGRLGAKQKQLTGQIDKAFKLAFAPLGDLEKLKNIVVHATLEACLYDYGPDFDHKPVSQNGDHARAAIAGLITQSNQWLISHLPLDEREFDDCQDLILKNFLLVGQEILRNLKEIYTAWQTARGKLLMLDQEIFGENIEDIEDQLDDLRLANFVYQTDYRHWRQYPRYLQALNIRLDRLQHNLEADLDAVYLLDTHMERLARCVKNPKFAEYRWLVEEYRINLFAQPMKTVQPVSAKRLETLWANLTTQ*	common_virus_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0023	persistent	direct	high	4172	1.0	GCA_009379685.1_00764
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	26833	28329	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	26834	28330	GCA_009379685_1_13_24	GCA_009379685_1_13_24	+	245424	.	4K7R_A	Cation efflux system protein CusC	MSIKCQLVAIDNIIKPCYDKILNFVYFSTMKMPYFLLLGLLLVQQADADYSLLDAQKQLTSNSPAIQASHALYQADVLQAESLQKLHYPRISLNAHAFALQQNSNIPLDHIKEQTAQHINTHFDHRFGSAPDGLLDALHNSTQTALDRLPDHQDVKLRHDGITPNITATMPIYTGGLISSSKNIANLQAQRGKFGLQERISLAKLNLIRHYFNVQLQKQLTDTQQNTLSAMQLHVDNAYKLEQQGFISRGQRMQFEVARNRVQRLYQSTQNQHQNSIYELAVLLGLPHIEPLSTPLFINTQHRPNWQALLKDSQNTPLNQKLKTDTQLADENIALRQSTKKPKIAAVARYTLDDKPDWFAGVAVSYNLFLGIDRDKQIEAAHLQKQAAQLGHEQVNEHITTTMHTAYGEMVLAQKTHALLQQNRQAAKENLRIQTLSFQEGFGTVAGVVDAQSALSQIDSETALNAYRYLLALATLLHHTGTIDDFDDYLSLDDAYKL*	hhsuite_tools	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0024	persistent	direct	high	1496	0.999	GCA_009379685.1_00765
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	28391	29554	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	28392	29555	GCA_009379685_1_13_25	GCA_009379685_1_13_25	+	245424	.	COG1566	Multidrug resistance efflux pump [Defense mechanisms]. 	MTDKTDDVKPDTDGNHPKKQKPHTQAKSKPRPLALFLLLALIGSVLLVIIFGLIQSYGTPQNLPTANAIGSTNEPPKGVIAHLRQKITGPATFSIQGRVEGETVNISTKLPSRVAAIYVKEGQAVRAGEPLVQLVSPEIDAKKQQAAAMLQSALAFQSSTDRGTRQENVDTLYANWQSAKAQATLAEESHRRGEYLYQEGVISRQRRDEMRAAKQSSAQIAHAAQQQYLKAQRGRTDELKSSADAQVQIARAAVAEADALDAETMLYAPIDGTVSKIYIQSSELVMPAVPVMSLLDNHPTITISVQENQYSHVHALPKLTGFIPALNKTADFKIVHTDDEGEFATIKNTRQTGGYDIHSFKTKLEPITPIEGLKVGMSVIFDITVLP*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0025	persistent	direct	high	1163	0.999	GCA_009379685.1_00766
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	29582	30760	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	29583	30761	GCA_009379685_1_13_26	GCA_009379685_1_13_26	+	245424	.	PF12698.7	ABC-2 family transporter protein	MIVRFIRAFCQAFLRELNRLSCNRFDLAMAMIAPLVIIVLFGAMFYHGKAHHLPVALVDEDNSELSHLIYQHIHHNETIKTVLILDNVQDAHHAINRLDVGGYIHIPKDAQNHLVRGENTGIHIAYNQSFFSIGSAISSALSKSTKGGIAKFIQTKHLTGVLPHLSGNMPHVKISVLFNPNLSYEFFLEPFLVAAVLHLLLCCLVAHAIGQEFHEHSVHEWLYHSPFGALFGKISVYVLIISLWHGLWQAWLIGVRGWFVAGSLFVLIIGQLLFYLAYALFGAMVVLKTQNINKSYGILAVYGGSSMSFAGVTLPLNNASGFTQFWSQIIPFTPFARLQVEQWVIGSPFIITLAHLNSLLIFVLIFGIGSLLLLRRIKKTLIATPNSSKDDS*	hhsuite_tools	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0026	persistent	direct	high	1178	0.999	GCA_009379685.1_00767
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	30760	31860	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	30761	31861	GCA_009379685_1_13_27	GCA_009379685_1_13_27	+	245424	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MRRFIKQYLTIWLDIIKDRSIFLTMVLSVVFYGFFYPFAYQAQRPADLPIVIVDEEQSPLTQAIIHTTSHTPNIHVLAVVSDFRQAQMLVQSAKADGILLLPDNLSQSIHHGQTGGVGLYLSSAYFLRTQNIGAGLVSSLQATIIQELGQVTQTRHKPMPELIHQSALFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGYRQRLWRASACDFLAIYAVALTIGCLSCFYLFGFVFWWHDYPRGGNFWGMMLGVPIFVSCAIGVALLIASWVADGAKVGVLLIFSSVPLFMLTGLAYPLMAMPKFLQPLAHALPTTQGVQMFIQLNQMGVSIQDVWQKMAYLASVAVLCLGVAFWRLRLVNKSV*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0027	persistent	direct	high	1100	0.999	GCA_009379685.1_00768
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	32185	32304	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	32186	32305	GCA_009379685_1_13_28	GCA_009379685_1_13_28	-	245424	.	PDB:2MXZ_A	L-alanyl-D-glutamate-peptidase-endolysin	MAQASGKLGVNVRWGGAWMVITGKAGTPQEWVKAYRAGG*	common_virus_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0028	.	unmatched_CDS	none	0	0	.
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	32496	32909	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	32497	32910	GCA_009379685_1_13_29	GCA_009379685_1_13_29	+	245424	.	COG1598	Predicted nuclease of the RNAse H fold, HicB family [Defense mechanisms]. 	MHYPVTLTPDTDGFCVTFRDIPEAISQGDTIDEALEMAQDALMVAMEFYFEDNRAVPMPSQAQDGEHLVSLPPSVWAKVLLLNEMLCQNVSQAELAKRMGIIPQQVTRLVDLSHATKIDTLANAFAKLGKQLQVGLT*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0029	shell	direct	high	413	0.998	GCA_009379685.1_00769
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	32889	33683	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	32890	33684	GCA_009379685_1_13_30	GCA_009379685_1_13_30	-	245424	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MKLTKQLKADIISHAFDCYPAECCGLIIDEDYYPCDNVAVNPTEHFEIDPKDFAKAESIGEIQAIVHSHPDGGVLPSDLDKLQIELHGVPWVIVAVSKQDYGDEPAFGIYEPCGYRPPLLGRAYIHGVQDCYSLVRDYYSRELDIDLPDFHRRDGWWEHENHEPLYEQNFEKAGFVTVDKSVGNLQKHDVILCRVGRTHHVNHALIWLGDDGALKSETTPDCVGNALILHHPYGRQSVREIYGKGWADRTVMVVRHQALSQTNL*	mmseqs_cdd	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0030	shell	direct	high	794	0.999	GCA_009379685.1_00770
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	33692	34405	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	33693	34406	GCA_009379685_1_13_31	GCA_009379685_1_13_31	-	245424	.	PFAM:PF05100.11	minor-tail-protein-	MPLNSDFQKPTVDGLITLFELDASKPGAGILRFHGHNHEHNDGVIVFRGKAYNPQALNVTGLEMRSDGRASTPTLTLANNIAGVQGAVSAYCLQFNDFAGAKLTVITTLAKYLDPINFDNGNPTASDECKEQIWFVEQKTSENAQQVTFELANPIDLEGQKIPVREITNYCHWAVVGKYRGEECGYTGVAMFDEHDNPTDNPIMDKCGGRMKSCVCRFGRNKPLPFGGCPASSLIGS*	hallmark_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0031	shell	direct	high	713	0.999	GCA_009379685.1_00771
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	34459	34839	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	34460	34840	GCA_009379685_1_13_32	GCA_009379685_1_13_32	-	245424	.	.	hypothetical protein	MSETTLTELSRTEAQVLQSFIAQVDYWKNQHGDKAATIEVIYYPEDDGFEVANGEPNNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTEFSLSYKNDRYGVRAALASEAKADDAKAPNEA*	.	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0032	persistent	direct	high	380	0.997	GCA_009379685.1_00772
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	34960	35157	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	34961	35158	GCA_009379685_1_13_33	GCA_009379685_1_13_33	-	245424	.	.	hypothetical protein	MSYAHMGKYDMAALACESMNWASTLIHLAKQNKHHADTLLDIAGYLLDDGQIEFANMADEFEKSL*	.	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0033	shell	direct	high	197	0.995	GCA_009379685.1_00773
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	35154	35717	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	35155	35718	GCA_009379685_1_13_34	GCA_009379685_1_13_34	-	245424	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNNLPQNANNGNFVSVFHGDIDQTTEMLCNARDLHQFLNVGRDFSNWIKNRIKQYGFVKGQDFIVMKNLSSPKRATAKSRQQVMIDYHITLDMAKELAMIENNEQGRKVRRYFIQMEKQALQSTQSLTAQITETTITLKHFEDGLSHAGRYLATHGKQTKPRLKAKLNELLAKAQPFLPFSEFGGVK*	common_virus_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0034	shell	direct	high	563	0.998	GCA_009379685.1_00774
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	35891	36151	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	35892	36152	GCA_009379685_1_13_35	GCA_009379685_1_13_35	+	245424	.	PFAM:PF16777.4	partition-protein-ATPase	MSYINSTELLQNQDTWKRSQVRLPNSLHQVVVQYANNQNMSLNTAIIHLLDIGLTSETQRVEGFRELKRLLNEANAKIQALENQEN*	phrogs_hmm	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0035	shell	direct	high	260	0.996	GCA_009379685.1_00775
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	36190	36867	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	36191	36868	GCA_009379685_1_13_36	GCA_009379685_1_13_36	-	245424	.	.	hypothetical protein	MKNLLIAGVVGLSLVGCATTSTTYTPSRKQISEPPIGSTNTASLGDKLLLQGVMTEREALYFPTAQKFTLGSTIGSGYYAKQRETAEYEFFSNGTNETGGGTFRDVIGMEMPFGIALRKSDNAICVTSMIGGAGGCRDGLQFEKRNWTVAGSNSFQQTLLYNGKVGNKINIAYREFSSDLARPAFNNDVEYDLSESNQIGYKGALLEVIEANNQMIKYKVIKNFN*	.	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0036	shell	direct	high	677	0.999	GCA_009379685.1_00776
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	37235	37696	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	37236	37697	GCA_009379685_1_13_37	GCA_009379685_1_13_37	-	245424	.	PFAM:PF08809.10	Tail-assembly-chaperone	MAFDLTLLKKDAKINAKREIEFDGLELTLQIQASEAFKRAAAEVQKIANTPKKVTKDSLKRGNQDEIGEYEAMLFILGEYCISQWNVTADGEPLAINGDNFLILLDQGFEKDKLTQFITLLFETYASLSQEFEDNKAKLVKKSMTATNGKKSG*	phrogs_hmm	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0037	shell	direct	high	461	0.998	GCA_009379685.1_00777
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	37747	37893	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	37748	37894	GCA_009379685_1_13_38	GCA_009379685_1_13_38	-	245424	.	.	hypothetical protein	MEYITIIVDFMKYLIEKHGLFVIWLMVASLITLYKLDMILTAVHLFFN*	.	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0038	shell	direct	high	146	0.993	GCA_009379685.1_00778
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	37977	38885	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	37978	38886	GCA_009379685_1_13_39	GCA_009379685_1_13_39	-	245424	.	PDB:5NGJ_B	Tail-tube-protein	MSSGAFVKTAYAKQTGETLPKTGWKTLPNISNGLTVATELTNSEMLSGSRMAKAGMVTSASVQGDIETELMFGAYDELIAAAFWSEWSAGASPNTLSVGATKHQFAIAKDFSDINVNHVFTGCVVSSFGLTIDTSSLIKLKFGMTGLGYQESKTESFAKTPTAQADTAKASGLSIGEIKVNGTKLDVCVESFSFELDNQTEVQKCLGDNIYGGNILAMLTNITGSMTIAYSQKAHEMISNQMTGATLSLELPIKFGNSKYVIKIPKFQVSGEIPSPSGTDLVTVDLSYTVVDESPVIEKHTA*	hallmark_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0039	shell	direct	high	908	0.999	GCA_009379685.1_00779
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	38920	39438	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	38921	39439	GCA_009379685_1_13_40	GCA_009379685_1_13_40	-	245424	.	pfam11195	Protein of unknown function (DUF2829). This is a uncharacterized family of proteins found in bacteria and bacteriphages.	MKLITASALTALLTSFVATRTVQATPLNRQEYNDLRGWQVPDNENPNDDGYLVVNAGVSERNVDGFDGYVSWLPKLAFEEQYKNDNLTFGQAVELLKGGKKVARKGWNGKGMYLLLATDIDFKTKANLSDMQNENGELTVPSITMKTADNKFAVGWLASQTDMLAEDWVVVQ*	mmseqs_cdd	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0040	shell	direct	high	518	0.998	GCA_009379685.1_00780
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	39447	39833	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	39448	39834	GCA_009379685_1_13_41	GCA_009379685_1_13_41	-	245424	.	PDB:2L25_A	tail-completion-protein	MNSFHIEQTILGHIKAWEHFDDVPLAKENRNFKPPDGIWGRVTILGGINQVRSISNTPNILQQGTLVIQLFCPQDLGTVKIKIWSDSLAQYLKAKQLGRLELLAPSIINVPSNDGIYQINVSVPYRYY*	hallmark_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0041	shell	direct	high	386	0.997	GCA_009379685.1_00781
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	39901	40782	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	39902	40783	GCA_009379685_1_13_42	GCA_009379685_1_13_42	-	245424	.	.	hypothetical protein	MMIQVSGDNAFIRAIIERYLQVQDTSPDKLDDLANEIVWLILKAFDNELRSSDAFNLPYKDITDSVFDSEKRLLTGSLTTFGKNMETAIHHSFDEDRPNKHHEKKEKYVKRFMYIHGKFVEHILLAQVQKEFIQDAVRQAQETAKKAEAAAESAEEIAKIAKNNADKAEKTYNTMFANYVTILGIFTAIIVTIFGGLNVVDTVISYGNTHFSTIIFLAALVLMCVVCLLYFLAKIILKLNGKDDDNQRFTLECLFGAIFITCIGLIVFAWCVSPTKITPELDKTTDKIEQKSD*	.	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0042	shell	direct	high	879	0.997	GCA_009379685.1_00782
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	40779	41393	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	40780	41394	GCA_009379685_1_13_43	GCA_009379685_1_13_43	-	245424	.	COG3600	Uncharacterized phage-associated protein  [Mobilome: prophages, transposons]. 	MLYYSLAYLKSQVIITVLYEIVMIIWLFLSHFKKGVVMIKAPYNPMDVANYIVAEAIKREKPVTHLKLQKLLYYVVAKYAKTYNTILINEDIVKWQYGPVVKSVYHYFKLHGDRIITKPIAYLESAEIFNLKFTDVDVNNAQLGNDKRLVDTVGQVLNDTDLLTAYELVERTHKEPAWRNFEPEILQAKQELSYSMTELKVANI*	mmseqs_cdd	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0043	shell	direct	moderate	504	0.82	GCA_009379685.1_00783
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	41633	41833	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	41634	41834	GCA_009379685_1_13_44	GCA_009379685_1_13_44	+	245424	.	PFAM:PF16777.4	transcriptional-regulator	MPKITSTPKTQTQIQKDSNARRGVKNKAFTLKLDDIELIKSLSKRLNIPQNQLIMDAVRAYQRQLD*	phrogs_hmm	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0044	shell	direct	high	200	0.995	GCA_009379685.1_00784
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	41830	42177	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	41831	42178	GCA_009379685_1_13_45	GCA_009379685_1_13_45	-	245424	.	PFAM:PF04883.11	tail-component	MGIKWNKKLSIDPIADKIDATYRKFAIDCYNNVIALSPVRKGRYKNAHHISIGSPSYAETGGGIELVLGIPKHTYPLIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSAIANLG*	hallmark_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0045	persistent	direct	high	347	0.997	GCA_009379685.1_00785
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	42177	42527	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	42178	42528	GCA_009379685_1_13_46	GCA_009379685_1_13_46	-	245424	.	PFAM:PF12206.7	head-closure-Hc1	MRQEITADIANAFNTDLADTVKDFTAKRIILSDDDWAVNDTQVLSTINYSGRGVFTGFHAHEIDNKTIMQSDVKLICLQDELTEIPQIDDEINEMKIISISHDPAEVSFTIQLRGF*	phrogs_hmm	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0046	persistent	direct	high	350	0.997	GCA_009379685.1_00786
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	42524	42874	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	42525	42875	GCA_009379685_1_13_47	GCA_009379685_1_13_47	-	245424	.	CDD:cd08053	Head-Tail-Connector-Protein	MLDDLPIDTSDKERVLMVVNAYLINKGVKFVGDVPEPIKQAGLELAHAFMNGELLAGRTEGVVTSKSSKAGDVSVSKTYADGADGQAMGQHEMIALALMQPYIKKSYGVNALVGRL*	hallmark_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0047	shell	direct	high	350	0.997	GCA_009379685.1_00787
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	42931	43173	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	42932	43174	GCA_009379685_1_13_48	GCA_009379685_1_13_48	-	245424	.	PFAM:PF10281.8	Arc-like-repressor	MERILYFTDDFSQENQAYAKQHGLIIRNAKAYGAVDYLEQCDKVCGQVPIAYEHLPRFELDDNVSDDDTKPKRTRKPKEE*	phrogs_hmm	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0048	shell	direct	high	242	0.996	GCA_009379685.1_00788
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	43183	44136	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	43184	44137	GCA_009379685_1_13_49	GCA_009379685_1_13_49	-	245424	.	PDB:4AN5_F	Major-Capsid-protein	MAFDLVKFNQETHLVMTETIAQQVDKFNAQSNSTIQLIAKPFKGDFDVASSFKAIANLVRHRDVENGQNNISSARLTQHKNVAVKIAAGTPEILWEAAQYNWTMQNPQLAAIKIGEQLGRATIADMLNTAIKCGVSAIKGNTALVEGDGTTALDFASLTKGASRFGDRSQAIGAWVMHSGALTNLQLKALGNNERLFTYENVSVLRDPQGRLFIVTDCPDLVDESTKHNILGLTEGGLIVHNQNDFNSVIVPKTGTENITNAYQAEWSYGASVKGYTWDMTAGGANPNAGALATPTNWKKTASSDKDTAGVLVVAKA*	hallmark_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0049	shell	direct	high	953	0.999	GCA_009379685.1_00789
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	44139	44873	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	44140	44874	GCA_009379685_1_13_50	GCA_009379685_1_13_50	-	245424	.	PFAM:PF06810.10	minor-structural-protein-	MKLKLDENGNVVVQDGKPVYMYDDGQEIAFDAMQNMAKISQLNAEAKQHREAKEKAETLLKAFDGLNADDAKKALETVKNLDDKRLIDAGEVEKVKAEAKKAFDEQLAEKDAQINKIKQEYNNAVIGGAFARSSFIKDKTLLPSDIVQSSFGSHFTMENGKIVANLGGNPIYSRKNPGELADFDEALETIISQYPHKDSILRGSGASGAGATQAGVGKNTPKSLADCKTDEERVAWLNEQNNGE*	hallmark_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0050	shell	direct	high	734	0.999	GCA_009379685.1_00790
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	44946	45617	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	44947	45618	GCA_009379685_1_13_51	GCA_009379685_1_13_51	-	245424	.	PFAM:PF06152.10	minor-capsid-protein	MNEPQFDADSPIKLSAQVGVTLNQILAKFGDEQSTKISNAISYAYANGLPNQELVGIIRGTRKNRYQDGILQTTTRHAKTIAHTGTAIVASQAKQQFIHDNKDIIKGIKVIATLDLRTSGICRHLDGEIMPIDKAVYPPYHYNCRTSFEIVYDGYQTPKQRASMDGVVKNQTYYEWLKNQPKAYQVEVLGKKKAKLFQESSVDAFKEFDKNLRPMTLDEIKAQ*	hallmark_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0051	shell	direct	high	671	0.999	GCA_009379685.1_00791
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	45614	45856	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	45615	45857	GCA_009379685_1_13_52	GCA_009379685_1_13_52	-	245424	.	PFAM:PF06152.10	head-morphogenesis	MKHLINLERFKVHLANKFKTTLNEIDEFLQLVVFRHEISELNYKEFELLIGESKQKLLGFLVGYALELTQDWQELYNYST*	phrogs_hmm	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0052	shell	direct	high	242	0.996	GCA_009379685.1_00792
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	46229	46525	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	46230	46526	GCA_009379685_1_13_53	GCA_009379685_1_13_53	-	245424	.	.	hypothetical protein	MNEFIIPNSNSVSNDFNYSRTDLDAQEQQIAEFIKKGGKVINLDNSEQPKKKSAKKRDFNNQRINSKMHLVLCYLKRSGKRMTGLQIQEKRHIGNNFR*	.	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0053	shell	direct	high	296	0.997	GCA_009379685.1_00793
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	46611	46850	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	46612	46851	GCA_009379685_1_13_54	GCA_009379685_1_13_54	-	245424	.	PFAM:PF10078.8	transcriptional-repressor	MQIVELRNYLLSMNKQDRIEFAKKCGTTYGQMMQIYRGNRTCHPTLAIEIDKHSKGCVKCDVLSPDTDFNYVRANSESV*	phrogs_hmm	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0054	shell	direct	high	239	0.996	GCA_009379685.1_00794
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	46976	47698	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	46977	47699	GCA_009379685_1_13_55	GCA_009379685_1_13_55	+	245424	.	PDB:2FJR_A	Repressor-protein-CI	MTPEVRLKNLTLVLEKIEKEKGLNSFAKIAKEYDLNASYLSQLMNGNRQIGERSARSLEKKLKLEKFSLDNCPLQSNINPDFESITEWDNGAPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMGRRTLSNLGVMPINAYAVTARDDSMMPYVQDGDTIYIDKGRKEIKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQIATKQQISDGEFEVIGWVWSVSRLERW*	common_virus_hmm	common_virus	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0055	shell	direct	high	722	0.999	GCA_009379685.1_00795
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	47750	48655	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	47751	48656	GCA_009379685_1_13_56	GCA_009379685_1_13_56	+	245424	.	PF14337.6	Domain of unknown function (DUF4393)	MTAETFHLIPAITGAVSGAASVGLLNGPLQTLQDIWFVVYGHKWHYKVESIKAQQAMNIQAMQNNIQTGIEKIPANALKDPNVAIIGPALEASRFHMNEENIREMFANLIVSAMDERKDGQMHHAFVEIIKSLSPLDAKNLKYLNQDSAKNISPIANIIRQESNSYHMLYQHVFLGNPEVSDQDLIAPSIDNLSRLKLIDITYNDYLTDDSEYESFYHSAPYQEMTSALNKEHEALNLDISILQNPDLKIEFEGKILNKDERSEKLDQVMKGLESKIEIQKGVIKLTAFGKNFLSVCSPTT*	hhsuite_tools	nonviral_gene	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0056	shell	direct	high	905	0.999	GCA_009379685.1_00796
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	48684	48890	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	48685	48891	GCA_009379685_1_13_57	GCA_009379685_1_13_57	-	245424	.	.	hypothetical protein	MALAINIVLGANTVHFSRNIQKATQNAKKYLQGFALLAYMQAADKDKSVQDFLIIDPNPMTDEQKSLY*	.	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0057	shell	direct	high	206	0.995	GCA_009379685.1_00797
GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote	cenote	CDS	48953	49354	GCA_009379685.1	RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685.1_RCKS01000003.1	GCA_009379685.1|RCKS01000003.1	GCA_009379685_1_13	GCA_009379685_1_13@C0	48954	49355	GCA_009379685_1_13_58	GCA_009379685_1_13_58	-	245424	.	.	hypothetical protein	MMRLVMFGIKLLHSDDFIKSASSFGCFLAIMDKQTNKNHVYNLSTQVQRFELIDIDQVANLANSVQNGAISATVGTLFVGAGVLPALAALSIGAGLPNRTKDAYVCHIEFDDGKSAILQLSKRKYQQFLKRIA*	.	hypothetical_protein	C0	49355	0	49355	GCA_009379685.1|RCKS01000003.1@region_1_49355@tool_cenote_CDS_0058	shell	direct	high	401	0.998	GCA_009379685.1_00798
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	12204	12683	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	1	480	GCA_009379685_1_24_14	GCA_009379685_1_24_14	-	54809	.	.	hypothetical protein	MEIIIFIVVGLFVLGAILAILKFIWGLFKKIWLIIIGIAVLFGISWLIKYGFSIIGLDIPIWIIFILTLFCLGYLSHTNEKKVHRAVAKYFTIKEMGDLTDITNFLDEKSIKYDQEILSQAIVKLVEDDQIIEQLPGQLWRSTQSGNFLEPIETVHIEI*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0001	shell	direct	high	479	0.998	GCA_009379685.1_01759
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	12683	13090	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	480	887	GCA_009379685_1_24_15	GCA_009379685_1_24_15	-	54809	.	.	hypothetical protein	MNNDSTKIYDNLKDLEQAAKEIISRNILPKLIKHNQTSAAEFVSSFSKGADDFILQTERDEGLNFVAGYAILNLLESGTMQIDFDFYFQNTQGSWINKKKQSKTFNVDEYLNPQAQASLLEHQSLKFDIDKPLDR*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0002	shell	direct	high	407	0.998	GCA_009379685.1_01760
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	13092	13451	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	889	1248	GCA_009379685_1_24_16	GCA_009379685_1_24_16	-	54809	.	.	hypothetical protein	MIPFLLAGALIAGVFVATAFWKEIKSFIQASIERIKTHLIPSMIVGFKTYLQTGNALYATAQALQKFFSKNERGQWQETIMTRNVPANEIPEDIRRKVENNRGPVDITDEVQAELHLEV*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0003	shell	direct	high	359	0.997	GCA_009379685.1_01761
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	13448	14380	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	1245	2177	GCA_009379685_1_24_17	GCA_009379685_1_24_17	-	54809	.	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]. 	MPINTNQTTDLNRFQNRPKSSAKIAFELSDALYKMDDLVLPIKTKADLERTIGLRQYQSEVFEHWGFSETHKFDNKMIINLYGEPGTGKTMSAHAIAHALGKKLILINYGDIESKYVGETPKNIQAAFEFAKENDAILFFDEADAILSRRVTNMTSATDTSVNQTRSVMLTLLNDYNDTVIFATNFISNYDPAFMRRILIHIEYTLPDEETRTYLFNKYIPNKLPHSIDLPTIVKLSEGLSGSDISNAILLAAFSAKTEGCDLVTHENLQNKIEAIQKSKSENSRKETKFQTRVVSEEYVKSQLNDGETI*	mmseqs_cdd	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0004	shell	direct	high	932	0.999	GCA_009379685.1_01762
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	14383	15273	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	2180	3070	GCA_009379685_1_24_18	GCA_009379685_1_24_18	-	54809	.	COG2378	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains  [Transcription]. 	MDNKHERLADRFADIFMRLSSHEKLDTHELAAEYQVSDKTIRRDLLRMERYLPLVRKPKMVYLDKSKQFNLSEKEFGELIRLIGVHRLIPNMDIQFLRDMLKQNTRQLQIVGYEYENIEPFFDIIPLIKSAIAEQQIIRLDYKNQTRLVHPYKILNHRGCWYLIGTQNNEIKTFRLSKILNLSVLQGQSFVPDDEIWQLIDQGQGIWFGHQLTNVLIKTDEYARGYFLQKQILPNQKIIKSLEDGGLLIQCSVYQKQQIFPMIRSWIPHLTIIEPAEWRDYLNHQLKKYLNYLTEC*	mmseqs_cdd	nonviral_gene	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0005	persistent	direct	high	890	0.999	GCA_009379685.1_01763
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	15329	15559	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	3126	3356	GCA_009379685_1_24_19	GCA_009379685_1_24_19	+	54809	.	PFAM:PF10078.8	transcriptional-regulator	MIALRAWLKAERRNQKLSMRALAARMDRPHSFVQRVEEGDRRFDVVEYIWYCEALGINPSLGLQIILECNKVNITA*	phrogs_hmm	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0006	persistent	direct	high	230	0.996	GCA_009379685.1_01764
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	15889	16194	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	3686	3991	GCA_009379685_1_24_20	GCA_009379685_1_24_20	-	54809	.	.	hypothetical protein	MELLARIELATSPLPRECSTPELQEQTNNVERVAGIEPAPSAWKAEVLPLNYTRRVVYLGREYGGGGRIRTFEAFATELQSVGFDRSPTPPSEQVCLLMVC*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0007	.	unmatched_CDS	none	0	0	.
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	16350	17345	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	4147	5142	GCA_009379685_1_24_21	GCA_009379685_1_24_21	+	54809	.	PDB:1Z19_B	Integrase	MKLPKPRKRGNSYTIEIMLGGVRKFATRDTAKECTEWAAQQLLAHKAQVKTDKKQTPTLAELLNLHYEKVGKFKKTQTDKTYKKCLIRDFPWLVEKQVHEITGQDLTQWRNERLKSVSEGSVRREISYLSPIFTYAVKELFLINNNPFEFVKSPSQPASRYRRITQDEIDAIVTAAGYSTDMPLSQSSHYTAWAFLFAIETAMRRGEILNIKRSHIKDNYIILPETKNGESRHVPLSPRARALLVQITHDNEYLIPISDEAFVSAWRRLKSKSGVSDLGFHDTRHEAISRFVQNLKMPVEKLAKVTGHKDIKTLINVYYNPTIDELVAYFQ*	common_virus_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0008	cloud	direct	high	995	0.999	GCA_009379685.1_01769
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	17374	17652	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	5171	5449	GCA_009379685_1_24_22	GCA_009379685_1_24_22	-	54809	.	.	hypothetical protein	MNKYCIEILASAPPRVYIGDNVAGGKVVAIKSDDPELVSTTWLSEKFGLSKSLIVRKLRPISQGNGKFLYPRDVAVQMLEDDKIKRGRPRKN*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0009	cloud	direct	high	278	0.996	GCA_009379685.1_01770
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	17649	18122	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	5446	5919	GCA_009379685_1_24_23	GCA_009379685_1_24_23	-	54809	.	.	hypothetical protein	MQTTFKAGDLVYYPNRGTKIYELQESNSLDFLLEIKNSSTWTIFHSNGKTNGLSDMIQLFHATEENCELLSKLYGIEFEKPRPTPKQVIKHLLRTHEYVACYTSDSNETPSPDDVKKFITHIHNGATLPFVDAELDEWRYAIPFDIKTGEVITEIEE*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0010	shell	direct	high	473	0.998	GCA_009379685.1_01771
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	18133	18438	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	5930	6235	GCA_009379685_1_24_24	GCA_009379685_1_24_24	-	54809	.	.	hypothetical protein	MKGYKKGEVWIKTSTGDEVMIVRTIDNYVYFYRVKENRIGYAKSETFIINYCPKRIVNAGDKQKLLALDILISESMSAFLAILCILLLVMANIALFRFLIN*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0011	cloud	direct	high	305	0.997	GCA_009379685.1_01772
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	18442	18984	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	6239	6781	GCA_009379685_1_24_25	GCA_009379685_1_24_25	-	54809	.	.	hypothetical protein	MLIRQTPLAKRPGALTNEQVEAWMSANPDRVQRLDNTAYDHSIIRSIKTKPEKRKQVKPLDSKAIKDALSKQQRQTPKKVPVTCSARPKKAVKSATKHKKRGRKPVNRLKTLAKRRNDWLQYLQFTGQPMSSREVREMFGITNPRFAAERINQDGEYISITKEMYKSRKTLIFRVINYER*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0012	cloud	direct	high	542	0.998	GCA_009379685.1_01773
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	19204	19731	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	7001	7528	GCA_009379685_1_24_26	GCA_009379685_1_24_26	-	54809	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MSVNKVILVGYLGADPDIKQFDNGDMIASVSVATSERWTDKQTGERREQTEWHRVVFNGRLAEIAQQYLNKGSHVYVEGKITTRKWTDKKDGIERYSTDIRASTLTMLGSRPQNSGQTQNYQQQPAHNQAPQRTQQAAPGSHVQPYNPPVQYGNHSAPPIQAQYTQGVRDDDMPF*	common_virus_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0013	cloud	direct	high	527	0.998	GCA_009379685.1_01774
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	19728	20372	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	7525	8169	GCA_009379685_1_24_27	GCA_009379685_1_24_27	-	54809	.	.	hypothetical protein	MSRPPYYSDIKRMSVNNSLTKSCLNAAALNILLFAKCEDKTTLNFLLNNLRQVKRQLERGVVRMTPSQIKMVLNAINYYEGFVMHSVVRDVSHKDAYPARMFNSAKAIVDQILWRMAALERFSDDDDVIGINALAPLDVISHVDNDGETWLGLVLRTEGCDEFAVAEAYCRNQSGDSENLYFLTGEQTVRTINEMEAKEARLSLMQLFTTGERV*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0014	cloud	direct	high	644	0.998	GCA_009379685.1_01775
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	20365	20517	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	8162	8314	GCA_009379685_1_24_28	GCA_009379685_1_24_28	-	54809	.	.	hypothetical protein	MDVLRDIVFGFLCSALIVLLLVLWTEDSQREQALVIKEHKAWLQKAGDYE*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0015	cloud	direct	high	152	0.993	GCA_009379685.1_01776
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	20712	21407	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	8509	9204	GCA_009379685_1_24_29	GCA_009379685_1_24_29	-	54809	.	PDB:2FJR_A	Repressor-protein-CI	MSQFERLNYYVSEHFGEKNQTKIAEKLGVSKSTFSNWASRGISKSGIEKINAVYGAGAVQYIMNGTEAPEIQRLRDMIRAKESSKGADLERVVIFDNSKTVPVISWVAAGSWADCSPSTLDDVIDELPRPNTVSDPTFALQVRGESMLPDFNPGEYIYVDPSYGFLDLKNGDLVVVLESDKHQATFKQLVIGETEQDMYLRPLNPDWPEQKMLPKSQWELVGKVVGKWVKY*	common_virus_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0016	cloud	direct	high	695	0.999	GCA_009379685.1_01777
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	21498	21797	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	9295	9594	GCA_009379685_1_24_30	GCA_009379685_1_24_30	+	54809	.	PFAM:PF10078.8	DNA-binding-protein	MYFCVISLLAKVFIMCIIIVYYLHKMGYSMLDDKEIIKKLGGVNVVSKYLDVRYTTVYNWLERGIPAHIKVKHPDIFMPSDIEQLKPLKVNNEQQTPIS*	phrogs_hmm	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0017	cloud	direct	high	299	0.997	GCA_009379685.1_01778
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	21772	22722	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	9569	10519	GCA_009379685_1_24_31	GCA_009379685_1_24_31	+	54809	.	PFAM:PF08273.11	primase-helicase	MNNKRPSLDFEAIRLHATGRWLDLIFPAVGIHLKYDNPNKHQSCPICGGKDRFRCDDKNGTGSWICNQCGAGTGFKLVELRTGLTGYDLMACIGDIIGAGERVISDAERQAWRAKQKQRESATAQHKVEIQEQTAIVAQKQWQSASVCDRAHEYLQRKCIVGEYLRQDGDALLAPLYYTDIEHGTHKLVNIQRIMPDGEKRFLKGGRQKDCYFAMGAPTEVVFIGEGVATCGAVYEAFDRAFMTICAYNAGNLKGVAQIIRHLLPSARIIFIADNDAATASGKHGENVGIVKATEAAQTVGGVVVYPILNGGEDEY*	rep_hall_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0018	cloud	direct	high	950	0.999	GCA_009379685.1_01779
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	22712	24391	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	10509	12188	GCA_009379685_1_24_32	GCA_009379685_1_24_32	+	54809	.	PFAM:PF04735.11	DNA-helicase	MNIDFNDLLVQKGIDAVREQIKPAIEQVLNVAVVPQKAPESPLPAISEQLKIALNRYAIIVDVAKMTNKVYDTEAKMEMTKTQFGNKVGKKLANDWFANDHKTIERAIVDAERQRYEDKNIVNMLERYYYIDTTEEAWDVIKKQRCKLTAVKHRNPNRYDIWYKSEARIIIEPENIWFDPTGDKRPKVSDEVYANSYRGLPLEPDDTLTHEDAYVAARPIIDLIVHLCNGDFEDVDWLLNWLAIPLQKPGTKLDTAVIFHGRTQGAGKSLFFGRVMSAIYGQYALTLGQSQLETQYNDWVDGKLWAIFEEIFAGNDRYQNIGMVKQLITGEELYINKKFMSGWRQENFVNCVFLSNELMPLAIESDDRRMFVVTPKSKCPQQLATAVGQAVKDPSKTMIKAFLQYLLTKDTSTQSAHDEARMTQAKKDLITIASSSWERFINEWMQEYLRQPFDTCLATDLYKAYRLWCENRGEKATSLNKFSAYIKQFDTITGHRAWYKNKRAGGKREQGTFFVVGDLPTKDIENYFTLKYNTYHDAITDMTSGFAPIQPSHQPFKKP*	rep_hall_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0019	cloud	direct	high	1679	0.999	GCA_009379685.1_01780
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	24719	25135	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	12516	12932	GCA_009379685_1_24_33	GCA_009379685_1_24_33	+	54809	.	.	hypothetical protein	MQYQFVRAMAESFEGIPTIDSACYHYLYNSDSSKREVYYPELEIYFLNKLVSEYPELNKDHLASIVASALIECTYPVQGNEYAWTTKDRCLSTGISRSWWYLKGYDKIARSIIDSVRIKSDEVEAFTRRQIQDYYSSH*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0020	cloud	direct	high	416	0.998	GCA_009379685.1_01781
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	25256	25567	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	13053	13364	GCA_009379685_1_24_34	GCA_009379685_1_24_34	+	54809	.	PDB:5H0M_A	HNH-endonuclease	MAKYKLPGLQPRLKPLTSHQSKRNWGQGRGGRPWRRLRAEILARDQYTCRHCGRIGGQLEVDHIINTAQGGTDDKTNLQTLCRDCHQTKTQAEARVGGVQQFF*	common_virus_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0021	cloud	direct	high	311	0.997	GCA_009379685.1_01782
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	25686	26108	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	13483	13905	GCA_009379685_1_24_35	GCA_009379685_1_24_35	+	54809	.	PDB:2CMP_A	Small-Terminase	MKITPKQERYARNVAEGMGELEAAMVAGCKNHESARKYVADMAKRQNVQDLIAKLKSAPEPGEYESPLEYLTAVFNNKEGLYSPKERISAAIALLPYTEHKLAQTGKKEDNLDKAQNLAVSSRFATASYQADMWEHDIRQ*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0022	cloud	direct	high	422	0.998	GCA_009379685.1_01783
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	26105	26287	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	13902	14084	GCA_009379685_1_24_36	GCA_009379685_1_24_36	+	54809	.	.	hypothetical protein	MRYMNDAGDIAELNSPADAQGFVYPVVNGEYKIISYDSFIAEFRRIPLEKSRSIHDTRPD*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0023	cloud	direct	high	182	0.995	GCA_009379685.1_01784
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	26268	26747	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	14065	14544	GCA_009379685_1_24_37	GCA_009379685_1_24_37	+	54809	.	PFAM:PF11753.7	nucelotide-kinase	MTHDPINRPSHYTSCPSGIECIEIAELLPFCLGNCYKYLHRAGLKGKFKEDMEKARYYANRALFNGEVMPNAVKSRISYVANHKDANNAELLKLFKCWDVGGDGRLTRAFIDHLTETIDSVVSINTKLFDEFKTNLEGGINAVITQYNRNADRTISKDD*	common_virus_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0024	cloud	direct	high	479	0.998	GCA_009379685.1_01785
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	26750	28465	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	14547	16262	GCA_009379685_1_24_38	GCA_009379685_1_24_38	+	54809	.	PFAM:PF03354.15	Large-Terminase	MTQITWTTALPDWEDRIVAGQSLVPCAPLFERQAQIALKVFKALKLVDVIGSPEIGEVTKDWVYDFVAAIFGAHDLSTNRRLIKEFFLLISKKNSKSTLAAGIMLTALILNERQSCEMGIVAPTKEVADNSFRPLHDMIRSDPELRQMFNVSVHTKTITHLKTHATLKVVAAENDTLAGAKFTYLLVDELWVFGKRQGASSMLREAKGGLASRPEGFVIMLTTMSNEAPAGIMKEKLDYARDVRDGKIDDPEFLGVLYEYPKSYLDDNKHLDPKNFYITNPNLGASVDESWLISEFKKAQAAPEKAVLQDFMAKHLNVEIGISLRANRWAGAEFWESAGKDFTLDDLIDQCEVIAMGGDGGGLDDLLGCAVIGRLPKPKYIYTDQNNNRHEVKQWLVWNRAWCHPVALERRKQDEPRYRDFENDGDLVIVKEVGDDVAEFAEIARKLQDTGKLVGVGLDPAGSETLIEAMLNAGVSQDVMLQIRQGWQLGGHQKTCERKIASGDLTHANQPLMAWCVGNARIRATGAGVKMDKAESGNGKIDPVIAMLNAVAIMSRNPEPPKSADDVGIYF*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0025	cloud	direct	high	1715	0.999	GCA_009379685.1_01786
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	28511	29104	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	16308	16901	GCA_009379685_1_24_39	GCA_009379685_1_24_39	+	54809	.	PFAM:PF04586.16	prohead-serine-protease	MTKAYSTLQIKSVTDTDDDRIITGIATTPSPDRDDDVLETDGVKFALPIPLLWQHNHNQPIGEVIEATVTEKGIEIVAKIAKIAEKGKLKDRIDEAWHTIKSGLVKCLSVGFKVKEYNYIENSWGLHIKEWEWYELSVVTIPANPDAMITGIKQIKAAFNDQPKPINQAQVTKTHQPKPSANNGAVTLTSTQGVTLL*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0026	cloud	direct	high	593	0.998	GCA_009379685.1_01787
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	29101	30459	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	16898	18256	GCA_009379685_1_24_40	GCA_009379685_1_24_40	+	54809	.	PDB:8ECN_B	Major-Capsid-Protein	MNFQEQLAKVKATIAIKQKQIGDTMTKAAKDNRTVNDDEEAQIKACEDDIEKLEKNAQRLNTLIQAEQMASSATQVAGQNPEQAEASAVGAPIPEPESTKSPATVKDNLDKGIGFALMVKASAIATKSKGGITTREVLESWQVPDRVIKAAAQKAVIGTTTEEKFGQPLIDYSNLTGEFIELVRKKTVVDQLANHMRRVPFNVKIPTQTAAGSVGWVGEGKMKPVGNPEFGSMTLGHAKIAGIVLLSDELIRFSNPKADALVRDDLVATTAQFIDAQFFDPDKAEAAESPASVLNGVDAVSSTGTTADKYDADLQTLIAKVVDAGFSLEGAYWAMSETRAMQMSGLRDALGRTYFEGMSLVGSRSLKGLPVLTSGNLADKIVLIIPSQILLADDGGIDFSVSTEATINMAGDEEDAKMVNLFQNNLTAIRAERFIRWKPRMTKAVGYIKYTG*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0027	cloud	direct	high	1358	0.999	GCA_009379685.1_01788
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	30524	30712	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	18321	18509	GCA_009379685_1_24_41	GCA_009379685_1_24_41	+	54809	.	.	hypothetical protein	MQITYLKDAPLGAVGETHDVPEPQARILIILGIAKPATSQSKADKPKRKTKTTTENSELDLS*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0028	shell	direct	high	188	0.995	GCA_009379685.1_01789
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	30712	32022	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	18509	19819	GCA_009379685_1_24_42	GCA_009379685_1_24_42	+	54809	.	PDB:3KDR_A	Portal-Protein	MGFFDLFRKKSVNATPAPAWQTLIHEPYTGAWQKNDELKRTDLTHFHAVFACISLIAADIGKLRIQTKSSQNGVLLPTKSRTHAILKKPNRHQSWQQFIESWVSSKLLRGNAYVLKQRDIFGGLWQMYVLNPDRVKVLVSGDGEVFYQISTDKLYGLSDTVVPASEVIHDRMNCFYHPLVGLSPLTACAISVGLGLSIQHTSATLFGNNSRPSGILSVPSDIDKETAQKVKSDWQANYSGIKRGGIAILGSGARYEPITMSASDSQAIEQLKMSSETVCSVFHVPAFKVGMGEIKAGQKVSDLNEIYYSDCLQHYIEAIENLLDEHLDLEKGIECEADLSPLIRMDSTSQMAYLKEGTHSGILSPNEARATLGLPPVVGGESPLMQQQNYSLEALAKRDNSADPFGNAPTPSEPTKSAKAVKPRYRVYATIDKDKS*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0029	shell	direct	high	1310	0.999	GCA_009379685.1_01790
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	32019	32306	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	19816	20103	GCA_009379685_1_24_43	GCA_009379685_1_24_43	+	54809	.	PFAM:3JVO_G	Head-Tail-Connector-protein	MSQFATLDEVKHHLRYDDDDSDGILQIYLQSAQTAVKNYITDDITDEMLPSLKVATLLLVGYLDDNRNGERGAEFGNFLPAPVRQMLAPYRTPTF*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0030	shell	direct	high	287	0.997	GCA_009379685.1_01791
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	32343	32684	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	20140	20481	GCA_009379685_1_24_44	GCA_009379685_1_24_44	+	54809	.	PDB:2KZ4_A	Head-tail-adaptor	MKAKLIHSRLKIYRQSASRSATGAVKMNEWEHALTVWGRFIRLSDKDIIAGQAQSSQITARAIIRYRTDIDNTMRVQNGKQKYEIIGEPLADNNTGREYLTLMLKKVLDDRQN*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0031	shell	direct	high	341	0.997	GCA_009379685.1_01792
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	32668	33141	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	20465	20938	GCA_009379685_1_24_45	GCA_009379685_1_24_45	+	54809	.	PFAM:PF04883.11	tail-component	MIGKIEVLGLDKLDKQFAKLDDKVKDKALSKALNQALNPIRKDAKFYASVAPEPHTMIVKGGRRVVVQRGLLRSAIRKRKVPKREMGELGGHGVAMGIYVGKGTKQKEYPNYWHFVEYGTSQMPAVPFLRPAFDKNVQVAVNAFAKTLKDEIDKIVK*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0032	shell	direct	high	473	0.998	GCA_009379685.1_01793
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	33138	33494	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	20935	21291	GCA_009379685_1_24_46	GCA_009379685_1_24_46	+	54809	.	PFAM:PF05657.10	tail-component	MNASQLIYEKLSALVNNQCYPLFIPEHSPSNPPYIIYQIISTEPDNTLDGITGHEWANVQIDVYHHNYDDCLSLAAKTINQLDQIKPSIYHGVRYMRDNGSGLFRAIIEYGFWQTLEF*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0033	shell	direct	high	356	0.997	GCA_009379685.1_01794
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	33522	33953	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	21319	21750	GCA_009379685_1_24_47	GCA_009379685_1_24_47	+	54809	.	PFAM:PF16461.4	tail-tube-protein	MAKVVENLADSFFTLHVSADGNEYQKIEHLSKCDHPSEEKVLDDVTATDDRRTVKAPIDFKQESEIDFEYALDPKDTTHQLLQTSFEGGKELHWQLKYVVATGESRQFKGIISKLTTDNSDQKKKIRKTGTITITGDVTKVTG*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0034	shell	direct	high	431	0.998	GCA_009379685.1_01795
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	34036	34383	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	21833	22180	GCA_009379685_1_24_48	GCA_009379685_1_24_48	+	54809	.	CDD:pfam16459	Tail-assembly-chaperone	MSKIATLATELLAGLSAINEPKKINIAEFDGDIYIRQISVGEQEQIAKHLEKEKGNNMALSFIFGVCDEKGNRLFSLDDLDSINQINFKAMLSVIKEINKLNGLDIDTEDHEKNS*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0035	shell	direct	high	347	0.997	GCA_009379685.1_01796
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	34458	34706	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	22255	22503	GCA_009379685_1_24_49	GCA_009379685_1_24_49	+	54809	.	PFAM:PF06223.11	tail-protein	MTAHEFAQWRAYDRLDPIGGYRGDIQAAMIAASMAGGKLSDYLIIDPNPMTDEEREAYELEQRKAQLQAQMERTLAMFSAIG*	phrogs_hmm	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0036	shell	direct	high	249	1.0	GCA_009379685.1_01797
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	34770	35315	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	22567	23112	GCA_009379685_1_24_50	GCA_009379685_1_24_50	+	54809	.	.	hypothetical protein	MKNHFLVGLILFLAILTPSFAKTNVHKSDFDGSVTIRTEPSWVKCPQSKMMCPLVGYAWSDGEFGEQYATLIIEINDSWLKSYQSINRLKLNIDGEVTELNKLTPNQPTSYSHDQVSAISMDYFVIPLDKLNSFETAASIKMQVATDKGLYDMIYKGGKKQTRANKMLSEFMSALEQNKQK*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0037	shell	direct	high	545	0.998	GCA_009379685.1_01798
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	35493	39020	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	23290	26817	GCA_009379685_1_24_51	GCA_009379685_1_24_51	+	54809	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MAKVLSRLDILLHANTANYVREMKKATDKTKKELKSVADYGKLVGGQLGIAFATLGSAVSVSHIIATADQMQNLASQIRLATSSTEQFHAVQTELRAIANEQRSSFDAVVDLYSNSQRSLSALGKSQQDVINFTRNMTMAMNVGGRSAQAQAAALTQLGQALASGVLRGDEFNSVAEQAPILMDLIAKEMGVTSNAIRDLAKDGKITADVVYNAVAKATDSLSAMSAKMPTTVSQALQVIKNEYNYLIDDIMNQNSMMSQNIANAALWVAEHFRTLVSAAAMVGAVWLGIIAKNSALVTSFVTLTGATVASTKASIANAFSVQGQITAYQVLELKILSLSTGLGFKIVKTIQATTNAVAYARSLVGLAKSFNTATAAARLHTLALAGVTTAKRSAMGVGILATRTITGLGGAFMSLGRIITAHPIIAIGAVLASVVVSTHGVTGAINSLSDAFGVVTLMAKDFIVFVGDGFSMAWDIVSAFADNMLAKVGDTTKGSTGAFSNFFATSHGGFVGMLQVAAKTFDLINAAAKAGAKNALHNFVQLGKTTKNIFLGIGNAFVSIIEMMINNAARKIDFLSTKASSMAKVLGIEASIPLIGTVSLGRLQYDNVDFGAVASIADNNTNSAYNYVTQLADKATQATKANASLADSYNSVGSAATNASDKTKKTADDITDAINELDALVAKLHHESHQLLNNSLSEMIFETDNKLGKFYEATQAQKQKLKDLAGQKDLYTATKKANDELKSLARTIKLVGKQTPFDELAHDLFDVRHEMSVLNGETKNNLLLWAANAENAKLAFELNQRSSQIKHDAMLSNHASSYQRELLNIERQINEEIQKYAGLKQDGTEHIYEQIKANLQLHATEQKKLATHKAYMQLVFDSRSEEEKRLDILDEQLTILAEQHRLHGTDVSAQSRQLMSELLDLPKPDSSAFDELNFEHETRLNRLGRFMDKQKELYKDNEDALTQIAQEGVAARIAIDEAYQEAKRTLILSQSENIFESLASITKDSLGEQSRLYRAMFAMQQGFAIAQAGLAMQQAISKGLAKGFPEGLADMATAVSHGAKIVSAIKSVVMPVGQAHDGIMSVPKSGTWNLEKGERVLPRHTAKALDDKLDKIGNGGRPVNVVINNYSGEKTDVQQMPNGDMMVTIGKMISHTVDAKLNQRFIQARRQGGELYGR*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0038	shell	direct	high	3527	1.0	GCA_009379685.1_01799
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	39180	41447	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	26977	29244	GCA_009379685_1_24_52	GCA_009379685_1_24_52	+	54809	.	PFAM:PF05939.12	minor-tail-protein	MGASASVHHAVSKTQFGDGYAQRVSVGINNQRTDWSGSKTGDWQTVILPIKTFLDEHKGVIPFLWTNPHGQTKKYVCENYEISQKKGNFWEISLKFEQSNSDGSSVPLLDFSNQNSGTSTPNLPQSALDDINKKIQDEIERSTQKDDAHDKAIQSLNTSKTSLSKSIDEIKEQLAGVSSVPISVAWDSITGKPSSFNPSSHSHAISDISGLQSLLNAKANSNHSHAWNSITDKPQSFTPSSHVHQVSDIADLHTILSKYATKDEIPRINTDGLTIDTSNLATKSSVNELSEQIATKADLSHTHTMSEVTDLSAELERYALKTELNDISVDTSHLATKSSVNELSEQIATKADQSHRHAISDIANLQHRLDSKAPNTHTHSFSDITNKPTTLAGYGITDAISSDTTAFVTSDALNRALTTKASINHQHTITEVSGLQGILNNKLNSNASAASARKLTTPRRINGIAFDGTRDITLPTPTANISWSAISNKPTNFTPSSHRHAIGDITNLQRELDNKASRNHSHTWNSITGKPTTLTGYGITDAMRTDTDSETTGLISINRADSYIQGKQGSVRRWYVGSGSSSNHNVQLSNLTHNTQLELTNNRITSNKPLYVGTRRVLLEGDETASTTVQVTNHPTITLTLGATLEMTTFVYSNGRIVHRLNYKNMTKPALTALTSSSSRTKTLTVNLPTAMPRQVVQVNAHFYDSGYIGYASSLLAAWKLSETTNSTVPLKISDTNSSSNFSGFSDLVVTIEGF*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0039	shell	direct	high	2267	1.0	GCA_009379685.1_01800
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	41447	42007	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	29244	29804	GCA_009379685_1_24_53	GCA_009379685_1_24_53	+	54809	.	PFAM:PF14301.5	tail-protein	MHYIKLIDDKGHFEFIHEDFLYLYSDTADFIAIAQEDYQTYVQSVNQELIYQDGKIISLTNQISADEIKQTNQELVWSDIKDKRTKHAHSGVYVASVDKWFHTDESSRIQYLALITLPSLPDNLQWKTMDNSFITLTRPLLTELTSAMLIKEQQDFMNAERHKQLMMRVDNPLDYDYSDGWSAIYA*	phrogs_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0040	shell	direct	high	560	0.998	GCA_009379685.1_01801
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	42000	42449	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	29797	30246	GCA_009379685_1_24_54	GCA_009379685_1_24_54	+	54809	.	PFAM:PF05708.11	enoyl-CoA-hydratase/carnithine-racemase-like	MHRKVYLALYKGRADKFSYRFYDAVTRFFTRGQYSHCEIAVHIHNNIYQCYSSSIRDGGVRRKSMMLDDKWDLIKLDIDESQIRQFYGATKGSGYDLWGALGVVLGLRQHPDKYFCSEWCFEAITNKQDGWRFSPNDLYAIKSILTRRH*	phrogs_hmm	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0041	shell	direct	high	449	0.998	GCA_009379685.1_01802
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	42506	42895	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	30303	30692	GCA_009379685_1_24_55	GCA_009379685_1_24_55	+	54809	.	.	hypothetical protein	MSETTLTELSRTEAQVLQSFIAQVDFWKNQHGDKAATIEVIYYPEDDGFEVSNNEPNNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTAFILSFKDNRYGVRAALASEATDKADDGDDAKNTD*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0042	persistent	direct	high	389	0.997	GCA_009379685.1_01803
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	42979	43647	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	30776	31444	GCA_009379685_1_24_56	GCA_009379685_1_24_56	+	54809	.	PFAM:PF05100.11	minor-tail-protein-	MSFNTDIQQTTVQGFITLYELDARKLGGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGRASTPKLSIGDKINGIQGAVSALCRLYDDFARAKLTVTHTLQAYLDSHDAQNYRQQEWYIEQKVSENPSLGIVEFELSNPVDFEGQKIPVRQITTYCNEAVCGRYRGEVCGYTGTARFTHDGKPTDDPTLDRCSGLLAHCKLRDNEGSFCGFAAAGLI*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0043	shell	direct	high	668	0.999	GCA_009379685.1_01804
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	43644	43847	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	31441	31644	GCA_009379685_1_24_57	GCA_009379685_1_24_57	-	54809	.	.	hypothetical protein	MADKASPQARKKATANYFDKSLARIGLVISHTEPHVLDALNQIMAHKDCSKAMAIKTALVEYAKTLD*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0044	shell	direct	high	203	0.995	GCA_009379685.1_01805
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	43994	44116	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	31791	31913	GCA_009379685_1_24_58	GCA_009379685_1_24_58	+	54809	.	.	hypothetical protein	MIVILSIAFPPYVTARLVLAQSTPLVLMKCIVLQYTNKVN*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0045	shell	direct	high	122	0.992	GCA_009379685.1_01806
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	44231	45016	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	32028	32813	GCA_009379685_1_24_59	GCA_009379685_1_24_59	+	54809	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MRLTKTIKEAIHAHAKICYPAECCGLIIDGQYYPCDNVAPNPTEHFEIDPIDMFEMGEKGQIQAIVHSHPDGNAEPSEVDRVQMGIHGIDWVICAFGYHAGGEQYFDVKCHKPKAYQAPLLGREYHHGVQDCYSLVRDYYSRELDIHLPDFHRTDGWWEKEHHLPLYENNFTKAGFIKMQDKNDLQKHDVILCRVGRTHHVNHALIYVGDGKLKSETTPDCVGNALILHHPHGSLSVREIYGDNWQRRTAMVVRHERLNNG*	mmseqs_cdd	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0046	shell	direct	high	785	0.999	GCA_009379685.1_01807
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	45082	45675	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	32879	33472	GCA_009379685_1_24_60	GCA_009379685_1_24_60	+	54809	.	PFAM:PF06805.11	tail-assembly-protein-I	MKTVILHGILAKKFGKSFDLDVKTAKEACHALACQIPAFYAFMMNAEKQGIKFAIFNGEKRTQKTNIGEKQLDDITTASHIHIMPRVAGSGGKTMGWLQVVAGWVLVGVGVVTGNAGLIAAGAGLMLGGVSSLLMPTPNLDPNNEDGNRPNNGFGGAVTTVAQGNPVPILYGEREIGGFIVSAAIYAEDKMVQGVKV*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0047	shell	direct	high	593	0.998	GCA_009379685.1_01808
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	45698	50542	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	33495	38339	GCA_009379685_1_24_61	GCA_009379685_1_24_61	+	54809	.	PFAM:PF13550.5	tail-protein	MKIYGAKRQKQSSNKPYIQKDTASSTNSYQALYGLSEGEIYGLVDGGKSIRLDGTPIINDNGEPNFPDVSWDFRAGSIDQTHIKGFSSVENEQSINVELRHDRPYTKAINNKQLSAVAIRLGFNSLREQKGNGDVVGYRIEYAIDVQTDGGAWEMVLNTAVDDKVSQGYQRSHRIDLPKAQQGWSVRVRRLTPNRDSEMVSDTMVVSAVTEIIDAKLRYPCTALLALKYDAQTFSNIAKVAVHVRGMLIQVPTNYDPTARTYDGLWDGTFKLAYTNNPAWVFYDICTAKRYGLGDRLAGKVDKWSLYRLAQYCDEMVDDGKGGKEPRFTVNVYLQKADDAYRVLQNLASVFRALSFWDGTSIVVDADTPKEPVYVFSNANVIGGEFSYTGTRARDRHTIVKCAYDDPDNNFETDYIYVQDEHAIAKYGINQLELNLFGCTSKGQAQRAGIWALKSEQLETETVSFSTGLDGFIPKVGEIIHVQDNHRAGRMQAGRIVATDGRQITLDRMAGKVGDTLMVGDNSAQIVQIDDTVITTDTAIGRAGQVFAISSSDVAPRAYRVMTISQNDDASFSFTALQYEIGKFTATNNIAAIPKKEVSVIKAHVLTPPNSVGITERTRTHQGQAITTLVISWEQVVGAVAYIVEYKKDSNAWQTHKVSSHSLEIDGVYAGAYQAKVRAIDAFDNESLSQSSQLTTIQGKQGKPPRPINLTALGVLFGMNLGWGFVRGSGDTNFTEIEVSPDGRTHITTLGTFAYPTNKHEITGLQGNLTQFYRARIVDKLGNTSDWTDWASGTTSANADKVLDILSGQISQSHLDQSLRTPIGKIGTIESNISKINVDLPELNQSIADAQSTLNTAVASIDTEKKRLSSAIVDINTLKQSNDAKTQELLNLSQTVGGHTSSIRYLGVTTGELSQKYSQLKTTSDTANSEITTIKQTQSGQATSVERLRSEMANKASTSSVNSLSDSLATKERALSRRINTVESSVSGNSSSINTLNQSLATTNRALTTKQEQLTAQLANKASTASVNSLTESLANKEQALSRRIRTVESTASGNTSSINTLNQSLTDKERALTRKQEQLTAQLANKASVASINTLNQSLTTKERALTEQINTAKSELGGRITQISNETRTLTDANRTIGERINQLNSELAGTDSISDNLLINSNRTLVTGAYLIATYRISKTLKNGDKVRLTVNAPQLGSRRIGFMAYNSNSASGSKLSDIRNRQGNSYTAEFEWNVGTGANNELWLYHNAENTRSVSTVASVSLQKITTSSGLASIKSSVANLERTLTTTNQSLAERINTVQTTLNGQTASIQQHAQTLNGLSAQWTLKVQSGGIVSGIGLASNNGVSDFAVIADKFYVASPQGDKKPMFSVITRPTTINGTTVPTGVYLNGDLLASGTISGDKIRANTQITAPNIRGGSINIGSNFSVDSQGNLNANSGVFRGQVFADKITGQIDVESLKSSAVALGYDIFISPDGWYNNSPTQFDKAFKASYPSLGSIINGIGDQNYDVGSILYEIRVFCKRAITVKQKLYVVDDNLYCYINGRSAFGYYEDDYGYDVPRSYAGRRNEEISLSLQQGLNTIQYINNNSGKHSVHLVLIGDFIDNNIIKFA*	hallmark_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0048	cloud	direct	high	4844	1.0	GCA_009379685.1_01809
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	50553	50927	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	38350	38724	GCA_009379685_1_24_62	GCA_009379685_1_24_62	+	54809	.	.	hypothetical protein	MIDTQGLHAPFLISWFGVWLFAFLGGWASAFIKIDEIDNRLQYPFIAKPLIGTVAGVAMAMIINGQAEPPAISLAFWSFVGSICSTPIITGFLVFISDQKRQNELYKSAQSKLMPWSNKEKKHE*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0049	shell	direct	high	374	0.997	GCA_009379685.1_01810
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	50920	51246	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	38717	39043	GCA_009379685_1_24_63	GCA_009379685_1_24_63	+	54809	.	.	hypothetical protein	MSNLIIINTVICLVGFFVGVHTFIKYLKAFSAEKTPVVEAWLVAIGMLGWSVVLYASFDEPIITRLEIFSRLLFLIYWVGGILKVQKQCIKIRRHLSKRKAQMNLYKP*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0050	shell	direct	high	326	0.997	GCA_009379685.1_01811
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	51271	51816	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	39068	39613	GCA_009379685_1_24_64	GCA_009379685_1_24_64	+	54809	.	PFAM:PF08291.10	Peptidase-M15	MTSIRHIQTQIGTTADGIWGDKSKQALKSAINGGKIVTITKNISLNELLASNTAKKHNIDNMPNQAILQNLIDASVNLYQPVREILGVPIIITSGYRCSALNKAVGGSATSAHMSGFAIDFTAPKFGTPKLIVPHIVRKLKEKGIGFDQAIIEYPKSPRSWVHLGYKHPSGKQRGSSFVIG*	common_virus_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0051	shell	direct	high	545	0.998	GCA_009379685.1_01812
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	51895	52071	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	39692	39868	GCA_009379685_1_24_65	GCA_009379685_1_24_65	-	54809	.	.	hypothetical protein	MKNMQTLNRELKMAELERIKMEAEKLRAETLKIQKEATWFPWLSLAVALIALIVALVK*	.	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0052	shell	direct	high	176	0.994	GCA_009379685.1_01813
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	52185	52802	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	39982	40599	GCA_009379685_1_24_66	GCA_009379685_1_24_66	-	54809	.	PFAM:PF10078.8	transcriptional-repressor	MMFCATLSQTFNFAKIMTYKIIIDGATSQAITDKATAYANYRAVCRDYDNKPKKVELMHDDSELSTKAPNMMLLDNNDVFSANDVLCQAMQTLGINIKGLKDKIKTSELKLSNSRIDGWIRPSDDRHFVQMHNDELVAVLKLLLSDTVATIKSPENIVALRKKLGLTQSELAEKFGLKSGFRQVARWESGDQEMPDAKWKKMQDF*	phrogs_hmm	hypothetical_protein	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0053	shell	direct	high	617	0.998	GCA_009379685.1_01814
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	52799	53704	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	40596	41501	GCA_009379685_1_24_67	GCA_009379685_1_24_67	-	54809	.	PDB:1Z19_B	Integrase	MPTFAQLYDKHFTYYATTVDASTASTYDKSMRKYVLPRLADMPIDEILPAHVLDLHAKIAKVSPFTAHRSIQRINRIFDYAVTITGDLEYNKIARIGRYTAKPPTHGWRFVDLAHVPKMLKDIDKLKGVGDTIMRAFWVVVYTGLRRSEVVYARKDEFDLSNGLWTIPASRMKINSNGDHIVPLSEQAIKLIELLLHANTHSDYVFVSPHAGTEIISTWSLYQVLVKAGYQHKQTLHGFRKIFSTHAHTSRLWTIDAIELTLSHKIGGVRGVYNHANMLDERRELLQWWANEVDKWRGVKR*	common_virus_hmm	common_virus	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0054	cloud	direct	high	905	0.999	GCA_009379685.1_01815
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	53764	54138	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	41561	41935	GCA_009379685_1_24_68	GCA_009379685_1_24_68	-	54809	.	7DU0_A	monomer, two-domain, VIRAL PROTEIN	MKIQDMKAIQENRQNLTAFLHITEIKVINALLADGVDVNHMNFEQICNTTLEQYQAKKISNLKAARIFEILAHSNRDFKIEKFRCSHGYNEIYKYSPAHGAYLFYCKGGQRQLNALIAENGKYI*	hhsuite_tools	nonviral_gene	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0055	cloud	direct	high	374	0.997	GCA_009379685.1_01816
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	CDS	54696	54806	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	42493	42603	GCA_009379685_1_24_69	GCA_009379685_1_24_69	+	54809	.	PRK00049	elongation factor Tu; Reviewed	MAKAKFERVKPHVNVGTIGHVDHGKTTLTAAIATVAA	mmseqs_cdd	nonviral_gene	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_CDS_0056	.	unmatched_CDS	none	0	0	.
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	tRNA	15766	15841	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	3563	3638	tRNA-Thr	tRNA-Thr	+	54809	.	tRNAscan-SE score: 79.7	Thr	NA	tRNAscan-SE	.	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	tRNA	15923	16006	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	3720	3803	tRNA-Tyr	tRNA-Tyr	+	54809	.	tRNAscan-SE score: 61.0	Tyr	NA	tRNAscan-SE	.	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	tRNA	16033	16106	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	3830	3903	tRNA-Gly	tRNA-Gly	+	54809	.	tRNAscan-SE score: 78.4	Gly	NA	tRNAscan-SE	.	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_tRNA_0003	.	.	.	.	.	.
GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote	cenote	tRNA	16119	16193	GCA_009379685.1	RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685.1_RCKS01000009.1	GCA_009379685.1|RCKS01000009.1	GCA_009379685_1_24	GCA_009379685_1_24@C1	3916	3990	tRNA-Thr	tRNA-Thr	+	54809	.	tRNAscan-SE score: 74.7	Thr	NA	tRNAscan-SE	.	C1	42606	12204	54810	GCA_009379685.1|RCKS01000009.1@region_12205_54810@tool_cenote_tRNA_0004	.	.	.	.	.	.