core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	21176	22384	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	1	1209	GCA_009379715_1_12_21	GCA_009379715_1_12_21	+	237761	.	COG4536	Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains [Inorganic ion transport and metabolism]. 	MPRPRTQNLANLSFVSIAIFTVSVAAIFIPSTAFAAFELGGTPTNLALLIFFICLSLVVSFLCSISEATLLTMTPSYIDTLEEDNPKGAALLKSVKVDHIEKSISAILTLNTVAHTLGSLGAGAQAVIVFGNAWFGVFSGVMTLIILIGTEIIPKTIGTVYWRRFAMPVAYYVRTINVALLPVIWVTEKISRMLTRGNQEIGFNRHEFLALANQGESLGQMSEMETRIIKNSLALGMINVEDILTPRSVVSAFDENMTVGDVFASYPKLPFSRFPIFDEDLDNATGFILKSDLLIAKANQEIHTPIKQFRRDINFVFAKMKLFDLLDLMLKEQVHIALAVGEFGEVKGLVSLEDVLETLLGLEIVDEFDRVDDMQILARQLMDKRMARLGAKLEEDAPFDEK*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0001	persistent	direct	high	1208	0.999	GCA_009379715.1_00426
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	22490	23095	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	1315	1920	GCA_009379715_1_12_22	GCA_009379715_1_12_22	+	237761	.	PF13474.6	SnoaL-like domain	MAYSFIDKYIEYKGWFMKYSTRSVLRKAVAASMLTAVIRSAIQLTGRSFGKGASIGLFIGMIGVQSLITTNAYAISEQDVSRYASSMSSAANAQNIAQISRLIDDDAIISLSRGGKTTSLDKEGYLQLLQKSWATSSDYRYRINVADVVVTGNQARAQIVTTETWTQDGKPVTIKTASRATFSQVGNNAVLLRSVSQVTVD*	hhsuite_tools	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0002	persistent	direct	moderate	557	0.919	GCA_009379715.1_00427
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	23290	26169	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	2115	4994	GCA_009379715_1_12_23	GCA_009379715_1_12_23	+	237761	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MKKHTKSSISTQILKPLSLAISSCILVACSSTGTPAKPVSQTPKPIPQAKPSQQINISSGNTNLGNTKTGADVDVLDVQMLDALEALLQATDMSMVEGDELAIQRYGNLWDRVRRGYRINEMTNARIEAQKSWFYTRQTYLDRLTARASRYLHHTVAEAERRGIPSELALLPIIESSYDPTATSNAAAAGLWQFIPSTGRIYGLNQSATYDGRRDVIESTRAAYDFLTSLYNQFGSWELALAAYNAGPGRVSRAIKANQDQGLPTDYWSLKLPTETMNYVPRFLAVAQIVRSPNTYGINLPAIANHSHFRTVPVNYGVSLSEVATVTGLSVSELRLLNPALLNFTVDEIGPNRIVIPDSLPNQIDNQLASLKGYGFGGDYIATAPAQSITYVVPKSGATANTSSQQELIAANTLPTTIAQVTPNNTIVQEPALSKSEINLIAAEIQKTSPEVPAISPQDGNIQLNAVQTGQSVLDARGETKMLSFADGPKTQAVAQQPTQPVQVAVTPPAQPVQITVVSPTPEPISQPKPQLPPVTASIPVVSSPPVLVPPPPSRPRPEPASRPKPKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQTPSRQSTSTANTNSATHKVSAGESLTAIARKYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKTANTTMANTSSSPSVNKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQQTSQATQSTKNNQSTQSTATHRVQSGESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKAESSTPSRLGNTKNNSTRTPANTNIGITENYTVRSGDSLTMLSNRFGVAIGDLATANGLASNANLRIGQTLKVPKLTTTYTVKAGDGLIALARRYGISTQELAKMNNLEPTADLRIGQVLTVPNK*	common_virus_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0003	persistent	direct	high	2879	1.0	GCA_009379715.1_00428
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	26326	28158	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	5151	6983	GCA_009379715_1_12_24	GCA_009379715_1_12_24	-	237761	.	COG1274	Phosphoenolpyruvate carboxykinase, GTP-dependent [Energy production and conversion]. 	MTAKITAPDFVRHQALIHWVAEIAALTKPAAIEWCDGSEEENQRLIDLMIKNGTMIKLDEDKHPNSYLAFSDPTDVARVEDRTYICSKEEIDAGATNNWVEPSQMRTKLNDLFDGCMAGRTMYVVPFSMGPLGSHIAHIGIEITDSPYVVVSMRKMARMGKEVYDVLGADGEYVPCVHTVGSPLTEGQKDVAWPCNDDKYIVHFPETREIWSYGSGYGGNALLGKKCLALRIASAMGREQGWLAEHMLILGVTNPQGKKHYIAAAFPSACGKTNFAMLIPPAGYEGWKVETVGDDIAWIKPSEDGKLYAINPEAGFFGVAPGTNTKTNSNCMSTLGSDVIYTNVAVTDDGEVWWEGKTKETPANLTNWKREPHTGAERAAHANARFTVSAKQCPSIDPQWENPEGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAATMGSETTAAATGQQGVVRRDPFAMLPFTGYNMADYFNHWLQMGENLGKKAKAAGNQLPKMFKVNWFRRDTNGDFVWPGFGQNMRVLQWIIERCEGTANAVRTPIGLVPTYDDINWDQSDFTKAQYELVTSQDKDAWIKELESHAELFDKLGERMPTALKAHNAKLKADIEQA*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0004	persistent	direct	high	1832	0.999	GCA_009379715.1_00429
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	28456	29874	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	7281	8699	GCA_009379715_1_12_25	GCA_009379715_1_12_25	+	237761	.	PDB:3BH0_A	Helicase-ATPase	MAKAKSSYICQNCGAIYGKWAGQCTDCGEWNTLVEAPNTSLPHHHKSKTTTAPRKTANYAGAVSAVMTLDHVGVTLETRMPTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGDSLSGSALYITGEESLSQVAMRAVRLGLPTDRLRVLAETNVDTICAALTTEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDSRFRMIRAIKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIHTSGMDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPVRLCVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRANAPAANHPQFKNIQIIAVDRLDEAIYQAFEINAG*	rep_hall_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0005	persistent	direct	high	1418	0.999	GCA_009379715.1_00430
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	29916	30635	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	8741	9460	GCA_009379715_1_12_26	GCA_009379715_1_12_26	-	237761	.	COG1118	ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. 	MSIKIQNIHKTFGDFVALGEISIDISTGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYFDSIDVTDIPVQHRGIGFVFQQYALFRHQTVAQNIAFGLTLLPRNTRPSANTIDRRVDELLDLVQLSHTKTRYPHELSGGQRQRVALARALATEPKLLLLDEPFGALDAKVRKSLRDSLKDIQREIGITSILVTHDQEEAQAISDKIVIMNHGQIEQIGTPSKLFAQPSSDFVVDFLGL*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0006	persistent	direct	high	719	0.999	GCA_009379715.1_00431
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	30728	31567	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	9553	10392	GCA_009379715_1_12_27	GCA_009379715_1_12_27	-	237761	.	COG4208	ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. 	MSHTSSYSYQKNPATRDKPWVRWSLIGIAVVFMGVMLVVPLVSVFYEALKEGWQAYQAALLEPDALASIKLTLITAAIILPINTIIGVALAYLITRHQFRGKFVITTLLDLPFAVSPVVAGLMFVLVFGANTRLGGYLESMGIQVIFATTGIVLATLFVTFAFIARELIPLMQAQGDSEEQAALTLGANGWQMFWKVTLPNIKWALLYGIILTNARAMGEFGAVSVVSGHIRGETNTVPLMIEIAYNEYAFTLAFALSSLLALLALITLVAQGLMSHKK*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0007	persistent	direct	high	839	0.999	GCA_009379715.1_00432
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	31612	32490	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	10437	11315	GCA_009379715_1_12_28	GCA_009379715_1_12_28	-	237761	.	TIGR02139	sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]	MLNQPIPLKNRARRVMPFFGLSMGISIFALGLLVILPFLMMILTTLQMSFDDIMQTIREPQVFAAIKLSLSMAMLATLTNLIFGTLAAWVLVRYEFWGKSFLNALVDLPFALPTAVTGIALATLYAPNGLFGQWFTHLGILLFNEPIKIAFTPIGIWLALVVVSFPFIVRAVQPVLAELSVEFEEAAAVMGAGRLTTFCRVILPEISPAMLIGAGMMFARATGEYGSVIFIAGNIPMQSEILPLIIVSKLEQFDVAGAACVSLFMLLISLVFLFTMNFIQWKLSARLGAKTN*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0008	persistent	direct	high	878	0.999	GCA_009379715.1_00433
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	32840	33280	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	11665	12105	GCA_009379715_1_12_29	GCA_009379715_1_12_29	+	237761	.	.	hypothetical protein	MMMKNKWMRGLAILVLSLPTVTYAKTAAPKASEAPEVSLTQEEQMAIDFCDFSAYGVMHIAGDHQGGATKSEALTNHDKRMAELKDLIDLDPETATMLDKYWKGAIDRIFQESVQKTDAEKQAFVMGVGESSFYSCLDQVLKTPKN*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0009	persistent	direct	high	440	0.998	GCA_009379715.1_00434
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	33310	34485	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	12135	13310	GCA_009379715_1_12_30	GCA_009379715_1_12_30	+	237761	.	PDB:1OYW_A	ATP-dependent-DNA-helicase	MTETTVKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKVTMLSGDVAQQKRERYLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDAFNLPALERHIDQKFKLNQFEFLDEHK*	common_virus_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0010	persistent	direct	high	1175	0.999	GCA_009379715.1_00435
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	34499	35674	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	13324	14499	GCA_009379715_1_12_31	GCA_009379715_1_12_31	+	237761	.	COG0635	Coproporphyrinogen III oxidase or related Fe-S oxidoreductase [Coenzyme transport and metabolism]. 	MYPDLLDPAHIPLSLYIHIPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIGGGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTIGINRLSIGVQSFDHNALTVLGRIHNPDQASNAIRAARIAGFDRVNADLMYGLPNQNPSKAVNDIQTAIDAGATHLSWYQLTIEPNTTFYCTPPQLPDEEIMAEIETLGQSVLTKHGFYNYEVSAWHGPNDAPCQHNLNYWQFGDYLAIGAGAHGKLTLKNHPDYQDGIYRYQKSRQPKDYLAFEDAPKMVNFERISDDNLPFEFMMNALRLKDGVSTDVFETRTGLLISTIDNEMLPLQHQGLMVLDPLRIAPTRLGFRYVNYLVSQFI*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0011	persistent	direct	high	1176	1.0	GCA_009379715.1_00436
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	35756	35896	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	14581	14721	GCA_009379715_1_12_32	GCA_009379715_1_12_32	-	237761	.	COG5510	Predicted small secreted protein  [Function unknown]. 	MKKVLVASIAAVVVLTGCNAIKGFGKDVSKAGEAVSDTAQKVEKKI*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0012	persistent	direct	high	140	0.993	GCA_009379715.1_00437
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	36144	36689	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	14969	15514	GCA_009379715_1_12_33	GCA_009379715_1_12_33	+	237761	.	COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]. 	MSQFSDALIHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEEVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQLGFVGDIGQSVGYHKPTSR*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0013	persistent	direct	high	545	0.998	GCA_009379715.1_00438
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	36805	36996	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	15630	15821	GCA_009379715_1_12_34	GCA_009379715_1_12_34	-	237761	.	.	hypothetical protein	MTDSTTSPARQKALANIALVISHTEPHVLDALNQIMAHKDCSKAMAIKVALVEYANTLSQTSR*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0014	shell	direct	high	191	0.995	GCA_009379715.1_00439
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	37399	37803	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	16224	16628	GCA_009379715_1_12_35	GCA_009379715_1_12_35	-	237761	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MLYPIAILKGGDKTAHGIFFPDVPNLASACDELQDIHKMALECLDVHFSGLVADGEEIPLPTNFDAHTQNSQFDGMMWAWVDVDLSKYDVKSHKINITLPNHLIAKIDEKVAAHKSLYKSRSNYLAQLAMADLA*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0015	shell	direct	high	404	0.998	GCA_009379715.1_00440
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	38015	38212	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	16840	17037	GCA_009379715_1_12_36	GCA_009379715_1_12_36	-	237761	.	PFAM:PF16777.4	transcriptional-regulator	MPKIVANPKTRAQIQKDSDARRGVKPIGFKVPIEFAELLDELAKQSGKTKNIIIMEAVELWAKQL*	phrogs_hmm	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0016	persistent	direct	high	197	0.995	GCA_009379715.1_00441
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	38790	39227	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	17615	18052	GCA_009379715_1_12_37	GCA_009379715_1_12_37	+	237761	.	6AF2_A	HIT domain-containing protein	MFQLHPTLAKDTFLVGDFPLSTVRLMNDCQFPWLILVPRVSGIKEIYELSAADQVQFLRESSWVSSQMAKIFGADKMNVAALGNQVLQLHFHHIVRYQNDAAWPNPVWGHEAMPYTQEVLSHMQQTLMMALRGHHQMPFDWKMDV*	hhsuite_tools	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0017	persistent	direct	high	437	0.998	GCA_009379715.1_00442
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	39381	40043	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	18206	18868	GCA_009379715_1_12_38	GCA_009379715_1_12_38	+	237761	.	PRK00043	thiamine phosphate synthase. 	MTLQSIDKVPKLYLLTNDDELTTLLDKLERVFDTGAVSLLQVRRKSTLKLYDLATVYREAEMIVSLANDYDIKVVMNDSLELASHFGTGLHLGQRDGSVRVAREILGDHVVIGRTCHTDLALFKEAKREGATYGAMGTAFASITKPRAKIISKDILKKACELDFPLCVIGGITLENIHQLRDKLNGAAIDYIAVTADIMGHSVDTIADKCLAWQQKLNTW*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0018	persistent	direct	high	662	0.998	GCA_009379715.1_00443
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	40048	43602	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	18873	22427	GCA_009379715_1_12_39	GCA_009379715_1_12_39	+	237761	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MIDTFKPKLDLPTKANFKTTLPLLGGADLSFWLALAAKSEERLIVMIANHQNELNQLDTELSFFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGVLLVSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQAGMNTHHAQKLPSSAKITEFRLLPAREFPLEAGKEMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQVLKAYPRVVINTNHDTAKIGAMESLPPPILPINHQAAKPLSELLSFIKSGQVPILLVAESAGRREIILELLKDKVAVKVVDNYQEFINNLDDFNTDCIALSVAPIERGLWLRDETGGLCIISETQIFGRQVLQTRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIAIPPARRLAIKTFLLPKSDETIKEAILREILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATNAIKQGKTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRTEMIDRFGTLPTQTQNLFAVHRIRIRAKALGITKIDATQTTISIEFRADTPIDGLAIIKLIQSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESTKTA*	common_virus_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0019	persistent	direct	high	3554	1.0	GCA_009379715.1_00444
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	43599	43868	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	22424	22693	GCA_009379715_1_12_40	GCA_009379715_1_12_40	-	237761	.	.	hypothetical protein	MPMSIPTKVTVGYTQRRLFMVSMTVGLISLSGCQHIQVTKSPIPIIIHSHTKSPSQPKPTPTDAVPTKNRPISPPTQKSNTIFILEDWF*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0020	persistent	ambiguous	low	5	0.019	GCA_009379715.1_00444
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	43868	45130	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	22693	23955	GCA_009379715_1_12_41	GCA_009379715_1_12_41	-	237761	.	TIGR02800	tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MKSPITKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLSLAGLGTTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTVNGSIITPTFSPDGLSIAYSVQTKNNLPIIYIVSVSGGTPKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGTRRQSLYRYDFGTTHSTQIASYATNPRLSPDGSKLVYLSGGQIIIANTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRTIPTSGTVRDPIWSK*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0021	persistent	direct	high	1262	0.999	GCA_009379715.1_00445
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	45147	45947	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	23972	24772	GCA_009379715_1_12_42	GCA_009379715_1_12_42	-	237761	.	4G7X_B	Putative uncharacterized protein, TolA protein	MRLSDNHPTVNFDKSALILPILASVLLHTVIIIAVAAPLITPPTKPNTTIQTALVGQEAFNRAKTALSNHHANQNKPTATNTSSTITANDNDNAFMQAQNQHRYHPQVSTSATTTQAYHPPPNSAPFESNSPNIQNQPTNAHAKLAEYSNHVSDLEQSNHTESTPSRAQINAAITSVKHRIEAIWQRYPKQPNQTITFQVNMNQQGDVTSIQFGGGHPDLRESVEAAVYAAAPFYELGGMRDSIRLQFTTEQLIMDNNQTTNEPNH*	hhsuite_tools	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0022	persistent	direct	high	800	0.999	GCA_009379715.1_00446
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	45978	46412	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	24803	25237	GCA_009379715_1_12_43	GCA_009379715_1_12_43	-	237761	.	TIGR02801	TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MVTSNRFARRQRPLNSDMNVVPYIDVMLVLLVIFIVTAPMLATGIEVSLPKEQTKPITQADKLPVIVSIQADGNLYVSHKNAIDVPITPDKLDTLLRQMHQDNTDLQVMVNADADNAYSRIMQIMALIQNVGITQVSLLSESVQ*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0023	persistent	direct	high	434	0.998	GCA_009379715.1_00447
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	46438	47127	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	25263	25952	GCA_009379715_1_12_44	GCA_009379715_1_12_44	-	237761	.	TIGR02796	TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MNESISLISLVIEASVVVKLVMAILLLLSTISWVLIFHLGTKIGGIAKFDERFERWFWTDDIDHQLSVVQAESERAGLELIFYTGFYDQNHQDQDSSLSDDKKVQIVERRLRMALGSEQVHLEKGLSTLATIGSVSPYIGLFGTVWGIMNAFIGLGQAESVGLATVAPSIAEALIATALGLFAAIPATMAYNHFATKSNTLYENRSLFCEGLISALVTNLAKKNTASTL*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0024	persistent	direct	high	689	0.999	GCA_009379715.1_00448
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	47404	51576	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	26229	30401	GCA_009379715_1_12_45	GCA_009379715_1_12_45	+	237761	.	PDB:5XDR_A	Replicative-polyprotein	MHSTDNLPVLAKDRHYLNKLKQKMNSTTGDLKTKCKIRYDAIYERSAEQVANRMDSIPKNLSEKLNHDLPVTAEADTLIQAIRDHQVVIIAGETGSGKTTQLPKLAMMAGRGITGQIGHTQPRRLAARSVAMRIAEELGEPLGQTVSFKIRFTEEGGKHSIVKLMTDGVLLAELGSDKFLANYDTIIIDEAHERSLNIDFIMGYLKRLLPKRPDLKVIITSATLDTQRFSDYFAANGKPAPVYIVEGRSYPVEVRYHPLTDTIVSSQDDDAFDDIEDNLPRALTAAVNECFEDARTKGHPDQADILIFAATEAEIRELQEVLMLYAPAHTEILPLFARQSYGEQQKIFAPSGKGRRIIIATNVAETALTVPNIRYVIDLGFARISRYNYRSRIQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEEDFNSRPEFTEPEILRTNLASVILQMERLQLGDVNAFDFITPPDLRLVNDGRKLLIELGALDDKSFTKTRAKKGRTQLSSLTKIGQQMAKMPIDPRLARMLVAGDTFDCLADILIIVSALAVQDVRERPINKHAQADQKHALFRKEDSDFLFYLELFAALFDQHSTNDNQALSSNARRNFAKKHYLSYARIREWQKTHRQLSEMMAEMGFEINKQKNHQNDVKIDTKKGVRLSLKSGTSHQKSIKQALVGAKALKNDIDNKTSIHYANIHRALLSALLSFVAHKTDTVGEYLMARSQKARIFPASTLHKKGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPNLLKYHYFEPHWSKKAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDALVANQYGMQMKFLADNANKIKDIERIEDKLRRRDLLVDEESLYQFYDAKIPNHIASRKSFEEFYHDAENKTPNFLHFSDEDVLNEAVDDSREFPESWHLGGLRLPLSYVFDPAADNDGVTVHVPIKALAQVDPVALLWGISGWRYELVLQLLKTLPKEIRRQIVPIPDTCQKIFHQLDASSKMGLLDQLVAALKTLGVQAHAQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARHRKASVQSIAIEQGVHHHFPNHFNFVKNKHTSGIVMQEFSALKADAAQSAVFIATFTEINAALAEHKKGVLTLIKGHLGAKQKQLTGQIDKAFKLAFAPLGDLEKLKNIVVHATLEACLYDYGPDFDHKPVSQHVDHARAAIAGLITQNNQWLISHLPLDEREFDDCQDLILKNFLLVGQEILRNLKEIYTAWQTARGKLLMLDQEIFGENIEDIEDQLDDLQLANFVYQTDYRHWRQYPRYLQALNIRLDRLQHNLEADLDAVYLLDTHMERLARCVKNPKFAEYRWLVEEYRINLFAQPMKTVQPVSAKRLETLWANLTTQ*	common_virus_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0025	persistent	direct	high	4172	1.0	GCA_009379715.1_00449
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	51838	53334	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	30663	32159	GCA_009379715_1_12_46	GCA_009379715_1_12_46	+	237761	.	3PIK_A	Cation efflux system protein cusC	MSIKCQLVAIDNIIKPCYDKILNFVYFSTMKMPYFLLLGLLLAQQADADYSLLDAQKQLMSSSPAIQASHALYQADVLQAESLQKLHYPRISLNAHAFVLQQNSSIPLDHIKEQTAQHINTHFDHRFGSAPDGLLDALHNSTQTALDRLPDHQDVKLRHDGITPNITATMPIYTGGLISSSKNIANLQAQRGKFGLQERISLAKLNLIRHYFNVQLQKQLTDTQQNMLSAMQLHVDNAYKLEQQGFISRGQRMQFEVARNQVQRLYQSTQNQHQNSIYELAVLLGLPHIEPLSTPLFINTQHRPNWQALLKDSQNTPLNQKLKTDILLADENIALRQSTKKPKIAAVARYTLDDKPDWFAGVAVSYNLFLGIDRDKQIGAAHLQKQAAKLGHEQVNEHITTTMHTAYGEMVLAQKTHALLQQNHQAAKENLRIQTLSFQEGFGTVAGVVDAQSALSQIDSETALNAYRYLLALATLLHYTGTIDDFDDYLSLDDAHKL*	hhsuite_tools	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0026	persistent	direct	high	1496	0.999	GCA_009379715.1_00450
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	53381	54544	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	32206	33369	GCA_009379715_1_12_47	GCA_009379715_1_12_47	+	237761	.	COG1566	Multidrug resistance efflux pump [Defense mechanisms]. 	MTDKTDDVKPDTDGNHPKKQKPHTQAKSKPRPLALFLLLALIGSVLLVIIFGLIQSYGTPQNLPTANAIGSTNEPPKGVIAHIRQKIAGSATFSIQGRVEGETVNISTKLPSRVAAIYVKEGQAVRAGEPLVQLISPEIDAKKQQAAAMLQSALAFQSSTDRGTRQENVDTLYANWQSAKAQATLAEESYRRGEYLYQEGVISRQRRDEMRAAKQSSAQIAHAAQQQYLKAQRGRTDELKSSADAQVQIARAAVAEADALDAETMLYAPIDGTVSKIYIQSSELVMPAVPVMSLLDNHPTITISVQENQYSHVHALPKLTGFIPALNKTADFKIVHTDDEGEFATIKNTRQTGGYDIHSFKTKLEPITPIEGLKVGMSVIFDITVLP*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0027	persistent	direct	high	1163	0.999	GCA_009379715.1_00451
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	54572	55750	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	33397	34575	GCA_009379715_1_12_48	GCA_009379715_1_12_48	+	237761	.	PF12698.7	ABC-2 family transporter protein	MIVRFIRAFCQAFLRELNRLSCNRFDLAMVMIAPLVIIVLFGAMFYHGKAHHLPVALVDEDNSELSHLIYQHIHHNETIKIVLILDNVQDAHHAINRLDVGGYIHIPKDAQNRLVRGENTGIHIAYNQSFFSIGSAISSALSKSTKGGIAKFIQTKHLTGVLPHLSGNMPHVKISVLFNPNLSYEFFLEPFLVAAVLHLLLCCLVAHAIGQEFHEHSVHEWLCHSPFGALFGKISVYVLIISLWHGLWQAWLIGVSGWFVAGSLFVLIIGQLLFYLAYALFGAMVVLKTQNINKSYGILAVYGGSSMSFAGVTLPLNNAPSFTQFWSQIIPFTPFARLQVEQWVIGSPFIITLAHLNSLLIFVLIFAIASLLLLRHIKKTLIAIPNTPKDDS*	hhsuite_tools	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0028	persistent	direct	high	1178	0.999	GCA_009379715.1_00452
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	55750	56850	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	34575	35675	GCA_009379715_1_12_49	GCA_009379715_1_12_49	+	237761	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MRRFIKQYLTIWLDIIKDRSIFLTMVLSVVFYGFFYPFAYQAQRPADLPIVIVDEEQSPLTQAIIHTTSHTPNIHVLAVVSDFRQAQMLVQSAKADGILLLPNNLSQSIHHGQTGGVGLYLSSAYFLRTQNIGAGLVSSLQATIIQELGQVTQTRHKPMPELIHQSALFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGYRQRLWRASACDFLAIYAVALTIGCLSCFYLFGFVFWWHDYPRGGNFWGMMLGVPIFVSCAIGVALLIASWVADGAKVGVLLIFSSVPLFMLTGLAYPLMAMPKFLQPLAHALPTTQGVQMFIQLNQMGVSIQDVWQKMAYLASVAVLCLGVAFWRLRLVNRSV*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0029	persistent	direct	high	1100	0.999	GCA_009379715.1_00453
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	57175	57294	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	36000	36119	GCA_009379715_1_12_50	GCA_009379715_1_12_50	-	237761	.	PDB:2MXZ_A	L-alanyl-D-glutamate-peptidase-endolysin	MAQASGKLGVNVRWGGAWMVITGKAGTPQEWVKAYRAGG*	common_virus_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0030	shell	ambiguous	low	30	0.25	GCA_009379715.1_00454
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	57264	57491	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	36089	36316	GCA_009379715_1_12_51	GCA_009379715_1_12_51	-	237761	.	.	hypothetical protein	MHKFSAFVVKAITPDEIRAAGEQFKSHPENNAPATADKLIANKSGFVLSERSLKNLQMIIAPLPKQWHRQAVSWA*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0031	shell	direct	high	227	0.996	GCA_009379715.1_00454
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	57491	57817	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	36316	36642	GCA_009379715_1_12_52	GCA_009379715_1_12_52	-	237761	.	PFAM:PF06805.11	tail-assembly-protein-I	MKTVILHGILAKKFGKTFKLSVNSTKEAMRALCVQLTGFEAFMMNAHKQGLRFAVFHDKHNVGENELDMNHTAKIIRVVPVVEGSKKEGVLETVIGAVLVVAGVVVTG*	hallmark_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0032	shell	direct	high	326	0.997	GCA_009379715.1_00455
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	57917	58099	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	36742	36924	GCA_009379715_1_12_53	GCA_009379715_1_12_53	+	237761	.	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family [General function prediction only]. 	MNSRQMIKLITDDGWYEVAVRGSHHHYKHPTKQGKVTIPHPKSDLPIGTVKQILKQAGLK*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0033	shell	direct	high	182	0.995	GCA_009379715.1_00456
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	58132	58539	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	36957	37364	GCA_009379715_1_12_54	GCA_009379715_1_12_54	+	237761	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MLYPIAIEKPVSTNECYGVIVPDIVGCFSAGDTVDEAVKNAYEAIVLHLDMLADDGEDIPQATDIAHHQENPDYQGMIWAVVDIDLSAYMGKSEKINVTLPSRLIVKIDEKVKAHKSLYKSRSNYLAQLASRDLA*	mmseqs_cdd	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0034	shell	direct	high	407	0.998	GCA_009379715.1_00457
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	58531	59310	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	37356	38135	GCA_009379715_1_12_55	GCA_009379715_1_12_55	-	237761	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MRLTKTIKEAIHAHAKICYPAECCGLIIDGQYYPCDNVTPNPTEHFEIDPIDMFEMGEKGQIQAIVHSHPDGNAEPSEVDRVQMGIHGIDWVICAFGYHADGKEYFDVKCHKPKAYQAPLLGREYHHGVQDCYSLVQDYYSRELDITLPSFARSDDWWENPNHEPLYENNFTKAGFIKVQDKNDLQKHDVILCRVGRTHHVNHALIYVGDGKLKSKTTPDCVGNALILHHPHGSLSVREIYGDNWQRRTAMVVRHQSLG*	mmseqs_cdd	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0035	shell	direct	high	779	0.999	GCA_009379715.1_00458
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	59694	59897	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	38519	38722	GCA_009379715_1_12_56	GCA_009379715_1_12_56	+	237761	.	.	hypothetical protein	MADKASPQARKKATANYFDKSLARIGLVISHTEPHVLDALNQIMAHKDCSKAMAIKIALVEYARTLD*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0036	shell	direct	high	203	0.995	GCA_009379715.1_00460
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	59894	60562	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	38719	39387	GCA_009379715_1_12_57	GCA_009379715_1_12_57	-	237761	.	PFAM:PF05100.11	minor-tail-protein-	MSFNTDIQQTTVQGFITLYELDARKLVGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGRASTPKLSIGDKINGIQGAVSALCRLYDDFARAKLTVTHTLQAYLDSHDAQNYRQQEWYIEQKVSENPSLGIVEFELSNPVDFEGQKIPVRQITTYCNEAVCGRYRGEICGYTGTARFTHDGKPTDDPTLDRCSGLLAHCKLRDNEGSFCGFPAAGLI*	hallmark_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0037	shell	direct	high	668	0.999	GCA_009379715.1_00461
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	60646	61035	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	39471	39860	GCA_009379715_1_12_58	GCA_009379715_1_12_58	-	237761	.	.	hypothetical protein	MSETTLTELSRTEAQVLQSFIAQVDFWKNQHGDKAATIEVIYYPEDDGFEVANGEPNNGVLKRNRTTAFRADLLAWASNQLRQLQGWDNSQTVTEFSLSYKNDRYGVRAALASEATDKADDGDDAKNTD*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0038	persistent	direct	high	389	0.997	GCA_009379715.1_00462
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	61139	61537	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	39964	40362	GCA_009379715_1_12_59	GCA_009379715_1_12_59	-	237761	.	PFAM:PF05939.12	minor-tail-protein	MGDFITFLTYIESEKLNLREKTMKTFNWDISADSSETTDLNTTITAFGDGYEQAVSFGINNSRKSWQCSKIDTKAVIDEIYRFLIDTKGVEPFNFKPLTDEPSIKVRLDGEVSRQKTGGDVWQIGFTLKQVF*	hallmark_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0039	shell	direct	high	398	0.997	GCA_009379715.1_00463
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	61609	62517	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	40434	41342	GCA_009379715_1_12_60	GCA_009379715_1_12_60	-	237761	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MQLVFDSRSEEEKRLDILDEQLTILAEQHRLYGTDVSAQSRQLMSELLDLPKPDSSAFDELNFEHETRLNRLGRFMDKQKQLYKDNEDALTQIAQEGVAARIAIDEAYQDAKRTLILSQSENIFESLASITKDSLGEQSKAYRAMFAIEKGFAIARSIMAIQTALANASASGPFPANLGMMATVASQTANIISAIKSVVMPVGQAHDGIMSVPKSGTWNLEKGERVLPRHTAQALDKKLDGMQNGNAGQVINVHVTVNSDGSNVQADTQMGKTMGEAMAKIARQVVIQESKQNGHLDRLYRR*	hallmark_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0040	shell	direct	high	908	0.999	GCA_009379715.1_00464
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	62501	65296	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	41326	44121	GCA_009379715_1_12_61	GCA_009379715_1_12_61	-	237761	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MGGFLLGEFMSNTYRLDIQVNADSANTALGNLKEHFDKIEQSSGKAGVGINGFSDKADKASKSSKKAGDGAKKFGDDAKKAGDDVDGLKRKTDGLKTAFGALKGVMFTAFAVAGVGGIIATADQMQNLASQIRLATDSTEQFHAVQTKLRAIANEQRSSFDAVVDLYSNSQRSLSALGKSQQDVINFTRNMTMAMNVGGRSAQAQAAALTQLGQALASGVLRGDEFNSVAEQAPILMDLIAKEMGVTSNAIRDLAKDGKITADVVYNAVAKATDSLSAMSAKMPTTVSQALQVIKNEYNYLIDDIMNQNSMMSQNIANAVLWVAEHFRTLVSAGAMVGAVWLANVAKNSALVASFVSLTSSTLANTKASIANAFSVQGQITAYNALSTRLMLLRLTKAHYIDLTKTAIATTAVYARSLVGLATSFDRTTLATKAATLASIGWTKTKRRAIGVGILATRTITGLGGAFMSLGRIITAHPIIAIGAVLASVVVSTHGVTGAINSLSDAFGVVTLMAKDFIGFIGDGFSMAWDTVSAFADNMLAKVGDTTKGSTGAFSNFFATSHGGFVGMLQVAAKTFDLINAAAKAGAKNALHNFVQLGKTTKNIFYGIGNAFVSIIEMMINNAARKIDFLSTKANGMAKVLGIEDSIPLIGTVSLGRLQYDNVDFGVAHTIKDNNTNSAYNYVTQLADKATQATKANASLADSYNSVGSAATNASDKTKKTADDITDAINELDALVAKLHHESHQLLNNSLSEMIFETDNKLGKFYEATQAQKQKLKDLAGQKDLYTATKKANDELKSLARTIKLVGKQTPFDELAHDLFDVRHEMSVLNGETKNNLLLWAANAENAKLAFELNQRSSQIKHDAMLSNHASSYQRELLNIDREINQELQKYAGLKQDGTEHIYEQIKANLQLHATEQKKIGNTQGVYAAGV*	hallmark_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0041	shell	direct	high	2795	1.0	GCA_009379715.1_00465
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	65329	66165	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	44154	44990	GCA_009379715_1_12_62	GCA_009379715_1_12_62	-	237761	.	.	hypothetical protein	MAQELPTTESLFDFLYLDSIKIRSFYAQLTGFGSLASIKANNALNSSLASEGALGVNAMAKIDAKVNYATGENQSSEKTYDATPTLPREMIDKLDELGFISRELGENSAGNLVLLNGVLSITDIETLQNLLEPTMHFATEEECKQLYGDRKRQAVKKKLEENKPVVQLIKAIPYALEARLKVGEDMVWMTLNRGEMVGNPHDINLKHGKVLFGEYYVLGVLDAIPNDDMNIDMTTGSFGDVILELSQSLKETMGRNTSSYGITPIAIFRVIRTNQQAK*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0042	shell	direct	high	836	0.999	GCA_009379715.1_00466
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	66128	66310	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	44953	45135	GCA_009379715_1_12_63	GCA_009379715_1_12_63	-	237761	.	.	hypothetical protein	MQDNAKKSDATHHSAQLLRDMFSCLNQAMSRETEKFHQEQKKVKEEINRGARITNHRISL*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0043	shell	direct	high	182	0.995	GCA_009379715.1_00467
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	66443	66655	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	45268	45480	GCA_009379715_1_12_64	GCA_009379715_1_12_64	-	237761	.	.	hypothetical protein	MIKPDAKEQGEFQITCHQATNQAMNYLHGLHAEIKRLGGVAPSLDIDEDEIARAIITRMVQGKRFMVNLD*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0044	shell	direct	high	212	0.995	GCA_009379715.1_00468
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	67100	67561	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	45925	46386	GCA_009379715_1_12_65	GCA_009379715_1_12_65	-	237761	.	.	hypothetical protein	MAFDLTLLKKDAKMSAKREIEFDGLELTLEIQASEAFKRAAAEVQKIANTPKKVTKDSLKRGNQDEIGEYEAMLFILGEYCISQWNVTADGEPLAINGDNFLILLDQGFEKDKLTQFITLLFETYASLSQEFEDNKAKLVKKSTTATNGKKSG*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0045	shell	direct	high	461	0.998	GCA_009379715.1_00469
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	67612	67758	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	46437	46583	GCA_009379715_1_12_66	GCA_009379715_1_12_66	-	237761	.	.	hypothetical protein	MEYITIIVDFMKYLIEKHGLFVIWLMVASLITLYKLDMILTAVHLFFN*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0046	shell	direct	high	146	0.993	GCA_009379715.1_00470
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	67842	68750	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	46667	47575	GCA_009379715_1_12_67	GCA_009379715_1_12_67	-	237761	.	PDB:5NGJ_B	Tail-tube-protein	MSSGAFVKTAYAKQTGETLPKTGWKTLPNISNGLTVATELTNSEMLSGSRMAKAGMVTSASVQGDIETELMFGAYDELLAAAFWSEWSSGASPNTLSVGATKHQFAIAKDFSDINVNHVFTGCVVSSFGLSVDTSSLIKLKFGMTGLGYQESKTTSFAKTPTAQADTAKASGLSIGEIKVNGTKLDVCVESFSFELDNQTEVQKCLGDNIYGGNILAMLTNITGSMTIAYSQKAHEMISNQMTGTTLSLELPIKFGNSKYVIKIPKFQVSGEIPSPSGTDLVTVDLSYTVVDESPVIEKHTA*	hallmark_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0047	shell	direct	high	908	0.999	GCA_009379715.1_00471
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	68754	68942	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	47579	47767	GCA_009379715_1_12_68	GCA_009379715_1_12_68	-	237761	.	.	hypothetical protein	MPKNRHRRLLQLYGEINELGAILDAPKPKDIHPHEWILMKDQLYYMRQYYRVLKQRTDDTEN*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0048	shell	direct	high	188	0.995	GCA_009379715.1_00472
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	68942	69325	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	47767	48150	GCA_009379715_1_12_69	GCA_009379715_1_12_69	-	237761	.	PDB:2L25_A	tail-completion-protein	MNSFHIEQTLLTHIKAWEHFDDVPLAKENRNFKPPDGIWGRVTILGGVNQVRSISDKPDIMQQGTLVIQLFCPQDLGTVAIKQKADSLANHLQTRRFGRLETLTASIINAGFHDYYQINVSVAWRYY*	hallmark_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0049	shell	direct	high	383	0.997	GCA_009379715.1_00473
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	69691	69891	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	48516	48716	GCA_009379715_1_12_70	GCA_009379715_1_12_70	+	237761	.	PFAM:PF16777.4	transcriptional-regulator	MPKITSTPKSQTQRTADSDAKRGFKTKGLKLHIDDISLIENLSKRLNIPQNQLIMDAVRAYQRQLD*	phrogs_hmm	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0050	shell	direct	high	200	0.995	GCA_009379715.1_00474
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	69888	70235	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	48713	49060	GCA_009379715_1_12_71	GCA_009379715_1_12_71	-	237761	.	PFAM:PF04883.11	tail-component	MGIKWNKKLSIEPIADKIDATYRKFAIDCYNNVIALSPVRKGRYKNAHHISIGSPSYAETGGGIELVLGIPKHTYPLIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSAIANLG*	hallmark_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0051	persistent	direct	high	347	0.997	GCA_009379715.1_00475
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	70235	70591	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	49060	49416	GCA_009379715_1_12_72	GCA_009379715_1_12_72	-	237761	.	PFAM:PF12206.7	head-closure-Hc1	MGLKAEISTEITQAFDTDLKDAVKDFTGRRVILSDDDWAVNDTQVLSTINYSGRGVFTGFYAHEIDNKTIMQSDVKLICLQDELTEIPQIDDEINEMKIISISHDPAEVSFTIQLRGF*	phrogs_hmm	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0052	persistent	direct	high	356	0.997	GCA_009379715.1_00476
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	70593	70952	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	49418	49777	GCA_009379715_1_12_73	GCA_009379715_1_12_73	-	237761	.	CDD:cd08053	Head-Tail-Connector-Protein	MITLDDLTDIDKADEQTVIIVNAWLNKHKIRAFDKTPDPIRQAGRYIAKAWLDGDLFVARTEGVVTSKSSKAGDVSVSKTYADGEQGQAMSQNEQIALALIEPYLQQPLGMFGLPLVRV*	hallmark_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0053	shell	direct	high	359	0.997	GCA_009379715.1_00477
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	71013	71216	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	49838	50041	GCA_009379715_1_12_74	GCA_009379715_1_12_74	-	237761	.	.	hypothetical protein	MSLPKDKVKPAFNFTYPSERAYFDESKSTLANAQVTDPAKSGADYGIKDPQVTEALTGTKSETAKVE*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0054	shell	direct	high	203	0.995	GCA_009379715.1_00478
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	71227	72243	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	50052	51068	GCA_009379715_1_12_75	GCA_009379715_1_12_75	-	237761	.	PDB:6R3A_A	Major-Capsid-Protein	MAKLREIFNKNVTLSYQVKDNLQRSKFWQSGAFVSDARLRPLLNSGSLTFDVPFIHPIDGNLEANYSNTIMTDIAMPRSIEGSKSKGRLALLNEGFIESRLESYLLGQSPLKLMAQMIDDYWLTQAENRAIATLFGLLNYDQSNGKKLSTDISKATADDSSGFDVHAFIDAEGTMDEMYQGKGLMVVHPLIATKMRKQRLLERVTTADDLKPIETYNGRTVIQSKRATVIGTGKNAKYVSYLLGAGAFAADMVAGHDDLELERTANTGNGSGHTTLWTRRNMLIHPQGFSFIGEPSTLTGGTKNEALSPSWTDLTTAANWRLDADADATPIRFLITNL*	hallmark_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0055	shell	direct	high	1016	0.999	GCA_009379715.1_00479
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	72246	72881	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	51071	51706	GCA_009379715_1_12_76	GCA_009379715_1_12_76	-	237761	.	PFAM:PF06810.10	minor-structural-protein-	MSEKPTTVLSDDTQNQITQEQYNELQAEVERLRKHSETLLAEKKQQSEQRKAEQAEKERLAEETARKKGDFETLEKQYQAKIQELNEQIAKRDKERDENLVKSHAQKLSSQLSDNPANQEILQILIEKRLSAKDGQLSVLDDSGAVSIMTLDDLAKQMQNCGKYDSLIIGTKSCGTGSNGQSAKRAGDYSEQERLALAHSNPALFNQLFLE*	hallmark_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0056	shell	direct	high	635	0.998	GCA_009379715.1_00480
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	73101	74567	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	51926	53392	GCA_009379715_1_12_77	GCA_009379715_1_12_77	-	237761	.	PFAM:PF06152.10	minor-capsid-protein	MNEPQFDADSPIKLSAQVGVTLNQILAKFGDEQSTKISNAISYAYANGLPNQELVRIIRGTRKNRYQDGILQITTRHAKTIAHTGTAIVANQAKQQFIHDNKDIIKGIKVIATLDLRTSGICRHLDGEIMPIDKAVYPPYHYNCRTSFEIVYDGYQTPKQRASMDGVVKNQTYYEWLKNQPAQYQDEVLGKTRAKLFRDGGMTVERFRALQLDKHFTPLTLEQMRALEPKAFDKAFAAVVKLDNTKDRVLAVERTDWGDLPNVMIAHTKDTITTHKHYQKAKSGELSSALFLVDEYLTDDFVLKLHHTIKGYDNVRIVPVHAEEQLGRNKIPMAYALALSEMLGVDMDLGIVQAKRAYRTSSDGVGRLLKRVSFDGVVLSGHHYMIVDDVITQGGTLADLRGFIESKGGKVILASTLNGKPNSAKLPITKATLGQLRKQAGKEIEQWWQEQFGYDFSQFTESEARYLAKQIHRYGIDAIRDILFASRP*	hallmark_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0057	shell	direct	high	1466	0.999	GCA_009379715.1_00481
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	74564	74806	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	53389	53631	GCA_009379715_1_12_78	GCA_009379715_1_12_78	-	237761	.	PFAM:PF06152.10	head-morphogenesis	MKHLINLERLKVHLANKFKATLDEIDEFLQLVVFRHEISELNYKEFELLIGESKQKLLGFLAGYALELTQDWQELYNYST*	phrogs_hmm	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0058	shell	direct	high	242	0.996	GCA_009379715.1_00482
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	75109	75477	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	53934	54302	GCA_009379715_1_12_79	GCA_009379715_1_12_79	-	237761	.	.	hypothetical protein	MNEFIIPNSNSVSNDFNYSRTDLDAQEQQIAEFIKKGDKVINLDNSEQPKKKSAKKRDFNNQRINSKMHLVLCYLKRSGKRMTGLQIQEKFGISATTLGSQTRLLNAQASKQYNQNSNPSRK*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0059	shell	direct	high	368	0.997	GCA_009379715.1_00483
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	75680	76330	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	54505	55155	GCA_009379715_1_12_80	GCA_009379715_1_12_80	+	237761	.	PDB:2FJR_A	Repressor-protein-CI	MPSERAKADQFPKMIRRYSKGQAKPRNDKMKLLTQCLGVPITWLDYGEGEMTKNNDKLTPITEWDDSTPLDDDEAEIPFYKDIAFACGHGAVNGDAPLEGRKLRMGRRTLSNLGVMPINAYAVTACDDSMTPYVQDGDTIYIDKGRKEVKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQVATKQQISDGEFEVIGWVWSVSRLERW*	common_virus_hmm	common_virus	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0060	shell	direct	high	650	0.998	GCA_009379715.1_00484
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	76382	76654	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	55207	55479	GCA_009379715_1_12_81	GCA_009379715_1_12_81	+	237761	.	.	hypothetical protein	MTAETFHLIPAITGAVSGAASVGLLNGPLQTLQDIWFVVYGHKWHYKVESIKAQQAITTFRPVLKKYQQMHSKTPMWQLSAQRWKPADFI*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0061	cloud	direct	high	272	0.996	GCA_009379715.1_00485
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	76609	77268	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	55434	56093	GCA_009379715_1_12_82	GCA_009379715_1_12_82	+	237761	.	PF14337.6	Domain of unknown function (DUF4393)	MAIIGPALEASRFHMNEENIREMFANLIVSAMDERKDGQVHHAFVEIIKSLSPLDAKNLKYLNQDSAKNISPIANIIRQESNSYHMLYQHVFLGNPEVSDQDLIAPSIDNLSRLKLIDITYNDYLTDDSEYESFYHSAPYQEMTSALNKEHEALNLDISILQNPDLKIEFEGKILNKDERSEKLDQVMKGLESKIEIQKGIIKLTAFGKNFLSVCSPTT*	hhsuite_tools	nonviral_gene	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0062	shell	direct	moderate	617	0.935	GCA_009379715.1_00486
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	77286	77504	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	56111	56329	GCA_009379715_1_12_83	GCA_009379715_1_12_83	-	237761	.	.	hypothetical protein	MALAINIVLGANTVHFSRNIQKATQNAKKYLQGFALLAYMQAADKDKSVQDFLIIDPNPMTDEQKKPLLSAL*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0063	shell	direct	high	218	0.995	GCA_009379715.1_00487
GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote	cenote	CDS	77567	77851	GCA_009379715.1	NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715.1_NXDK01000002.1	GCA_009379715.1|NXDK01000002.1	GCA_009379715_1_12	GCA_009379715_1_12@C3	56392	56676	GCA_009379715_1_12_84	GCA_009379715_1_12_84	-	237761	.	.	hypothetical protein	MYNLSTQVQRFELIDIDQVANLANSVQNGAISATVGTLLVRAGVLPALVALSIGAGLPNRTKDAYVCHIEFDDSKSAILQLSKHKYQQFLKHIA*	.	hypothetical_protein	C3	56676	21176	77852	GCA_009379715.1|NXDK01000002.1@region_21177_77852@tool_cenote_CDS_0064	shell	direct	high	284	0.996	GCA_009379715.1_00488