core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote	cenote	CDS	64457	65179	GCA_009735755.1	PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755.1_PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755_1_8	GCA_009735755_1_8@C9	1	723	GCA_009735755_1_8_58	GCA_009735755_1_8_58	-	97371	.	cd08563	Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	MLNFAHRGFSGKYPENTMLAFQKALESGADGIELDVQLTRDNRLVIIHDERVDRTTDGTGFVRDFTLSDIQQLNAAGTYADTLPPVSIPTFREYCHWVKQTDLLTNIELKNGVYDYPGIEAEVWQVLQEFQLQEQVIISSFNHASILRMKKLAPQLTYGLLTESWLINPGKYTRDLGVACYHPLYGSLTDDTVAEIKRQGIRINTFTVNDEEAVRKLLQQGIDCVITNYPDMVRRIVQGG*	mmseqs_cdd	nonviral_gene	C9	9307	64457	73764	GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote_CDS_0001	persistent	direct	high	722	0.999	GCA_009735755.1_01192
GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote	cenote	CDS	65451	67904	GCA_009735755.1	PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755.1_PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755_1_8	GCA_009735755_1_8@C9	995	3448	GCA_009735755_1_8_59	GCA_009735755_1_8_59	+	97371	.	PDB:4FM9_A	DNA-topoisomerase-2-alpha	MDEQHSDKVLPVCLENEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKKSARIVGEVLGKYHPHGDRSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMATNIPPHNLGEVVDGCVTLIDKPDASLEEIMTKIKGPDFPTGAKIMGREGILKAYATGRGSVKMRSCVAVEPMTKGKNRIVVTEIPYQVNKARVIESIAELTRNREIDGITALRDESDRKGLRIVIELRADVNPDIILNKLYKHTQLQETFGIIMLALVDGHPRVLSLLQVLQYYLGHQRQVITRRCRFELDKALARAHILEGLLIALDHIDEVIRTIRESATDETAKTSLMTAFGLTDKQAVAILDMRLRRLTGLEREKIEEEYRELEERIAYLRSVLADDRKVMEIVKTELLEAKKRFGDVRRTQLAADTSELGVEDMIPDERMVLTLTRRGYMKRINANVYHTQNKGGRGIKGMGTKDEDAVNHLLYTSALHTVLFFTNFGRVYRLKAYEIPEANSRNSKGIAAINILPLSTGEKVNALIDLDQADPSMNLFMATENGLVKKTELAEFKNVRRNGLIAISLIEGDHLAKVRLTNGKQRIILATKLGMAICFNESDVRPMGRNTRGVRGISLAPGDRVIGADVLAPDCQVLTVSEEGFGKRNNMDAYKIQLRGGKGAKNFKITPKTGVIVGVEVVREDQELMLITTNGIVIRTDIESIGIKKGRNTSGVKIQKLEGDDKVAALDTITVDGEEREAE*	common_virus_hmm	common_virus	C9	9307	64457	73764	GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote_CDS_0002	persistent	direct	high	2453	1.0	GCA_009735755.1_01193
GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote	cenote	CDS	68033	68458	GCA_009735755.1	PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755.1_PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755_1_8	GCA_009735755_1_8@C9	3577	4002	GCA_009735755_1_8_60	GCA_009735755_1_8_60	+	97371	.	PDB:4U7B_B	Mos-transposase	MLKIVKEKSTYETGEYLIELEEKMGFPIRMIKVDNGYEFVNDDDRTAKDSAFEKIAKALHMELRRTGPYSPWQNGKVERSHREDGKILYGRKVVTSEQELIRQVAKHEAEYNKIAKTGLTFKNPNQVVSEYFSTCNLCVDN*	common_virus_hmm	common_virus	C9	9307	64457	73764	GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote_CDS_0003	persistent	direct	high	425	0.998	GCA_009735755.1_01194
GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote	cenote	CDS	68563	69609	GCA_009735755.1	PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755.1_PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755_1_8	GCA_009735755_1_8@C9	4107	5153	GCA_009735755_1_8_61	GCA_009735755_1_8_61	+	97371	.	PFAM:PF06152.10	minor-capsid-protein	MRNLLSTVYEDSVYKTAYETQKLRGEFSTFREVAKRDIETAISKPWATDGKDFSTRIWENKAQLINTLQTEMARSFMIGEGAAPLINRIQKRFNVSFSNARRLVETETAYVQEKGMLDTYEALDVEQYQILAVLDMKTSDICRHLDKKVFDKKDAKPGITAPPFHCYCRSTTTPYIDGITDGTGDTRAARDPVTGKTVFVESDLSYEEWYNKYVVKGENKQTKSLENDKIKEKKEESVQYKEGDKNIELNDIINEEVLINKRLKINGVEFIPNNTIVIPKKVIAGLGSDKVLKVAKTYAEKYGVSESGWSKVVGTVESKKYIFDVHWYHHKDVGNIRFKIKSKKEGNM*	hallmark_hmm	common_virus	C9	9307	64457	73764	GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote_CDS_0004	shell	direct	high	1046	0.999	GCA_009735755.1_01195
GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote	cenote	CDS	69612	69857	GCA_009735755.1	PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755.1_PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755_1_8	GCA_009735755_1_8@C9	5156	5401	GCA_009735755_1_8_62	GCA_009735755_1_8_62	+	97371	.	.	hypothetical protein	MKVRYVGTTFGFGIDGLTNHKIYNCIAIESPFLRVIDDSGEDYLYSAINPGEFEGESEGYWEIINDNKNRDLFKLMNTNKK*	.	hypothetical_protein	C9	9307	64457	73764	GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote_CDS_0005	shell	direct	high	245	0.996	GCA_009735755.1_01196
GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote	cenote	CDS	70041	70433	GCA_009735755.1	PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755.1_PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755_1_8	GCA_009735755_1_8@C9	5585	5977	GCA_009735755_1_8_63	GCA_009735755_1_8_63	+	97371	.	.	hypothetical protein	MKEVIKTIPVEDGKLYALAGENRYLLADCGASIEIVEDSEELPVLGKGRVITNRGAALLITFEHKPGFSVNLESVQGFGFQGRVLRQDGIYEKVIFAHCLLASDLDLTEAGECTFEIQCSAEMIKRLRAL*	.	hypothetical_protein	C9	9307	64457	73764	GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote_CDS_0006	shell	direct	high	392	0.997	GCA_009735755.1_01197
GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote	cenote	CDS	70565	71128	GCA_009735755.1	PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755.1_PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755_1_8	GCA_009735755_1_8@C9	6109	6672	GCA_009735755_1_8_64	GCA_009735755_1_8_64	+	97371	.	PFAM:PF06810.10	minor-structural-protein	MTKEELKALGLTDEQVSKITEDYGKNYVSKSQFNEKNEALKNAEKEKGELTKQIEGLKKNNDSNADLKKQIEAMQEAAKAMETEHATQLAQMKLDAAVEHSLTVAKAKNIKAARALLDLKDAKPDEKGEVIGLSDKIKELQKSDAYLFESNDGQKKEVGGVHPGAGSDNNGTAAKLTVQQFERALGI*	hallmark_hmm	common_virus	C9	9307	64457	73764	GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote_CDS_0007	persistent	direct	high	563	0.998	GCA_009735755.1_01198
GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote	cenote	CDS	71149	71790	GCA_009735755.1	PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755.1_PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755_1_8	GCA_009735755_1_8@C9	6693	7334	GCA_009735755_1_8_65	GCA_009735755_1_8_65	+	97371	.	PDB:2XD8_E	Major-Capsid-protein	MAINTLEMATLFQQSLDKQMLVGATSGWMEANATQVKYNGGDTVRMPDISTLGLAKYDRDNGFNQGAVTLKYEDYKLTQDRGRTFHLDAMDVDESNFIAAAGNVMGEFQRVQVVPEVDAYLYSKIAELAKKVNHTTEAEPAKTTILEMLDDEITKIQDVIGENSGFVIVMSTPVRTILNNAKDIQKYFERSHREDGNILYGRKVFTSEQELIR*	hallmark_hmm	common_virus	C9	9307	64457	73764	GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote_CDS_0008	persistent	direct	high	641	0.998	GCA_009735755.1_01199
GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote	cenote	CDS	72006	72110	GCA_009735755.1	PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755.1_PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755_1_8	GCA_009735755_1_8@C9	7550	7654	GCA_009735755_1_8_66	GCA_009735755_1_8_66	+	97371	.	.	hypothetical protein	MRKEKGEPVCSAGREMFGVAVGGSAFRQGKAAAY*	.	hypothetical_protein	C9	9307	64457	73764	GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote_CDS_0009	.	unmatched_CDS	none	0	0	.
GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote	cenote	CDS	72624	73763	GCA_009735755.1	PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755.1_PTJT01000008.1	GCA_009735755.1|PTJT01000008.1	GCA_009735755_1_8	GCA_009735755_1_8@C9	8168	9307	GCA_009735755_1_8_67	GCA_009735755_1_8_67	+	97371	.	cd22359	Sugar fermentation stimulation protein A and similar proteins. Sugar fermentation stimulation protein A may bind to DNA in a non-specific manner and may act as a regulatory factor involved in the metabolism of sugars such as maltose. However, it contains a well-conserved PDDEXK nuclease active site and may have hydrolytic activity towards an unknown target. The putative catalytic domain belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI. The N-terminus of SfsA resembles a DNA-binding OB-fold domain.	MQETSEVKVGIFLNRPNRFLCEVEIDGTIECCHLPNPGRMWELLFPRVRMYVRRSGQKNRRTAYDVIGVEREGIPILLDTQYTNEVAARLIQEKKIPAWKDWQVLRREVAVGHSRFDLLLGRGPERFYVEVKSCTLFGRHGAMFPDAVTERGKKHLLTLAAMREEGIRTGILFLVQWDRARWFLPDYHTDPAFASVFFNVAPRLDWQAFSVHWTPTFQMPEPAGPLFYPAQVLDKENHDSGVYLVILQVERSVRIEIGAMGERIFPAGYYVYIGSAKKHLTARLERHKRLRKKMHWHIDYLRQQAKVTATVPIRTSAPLEHSLAAAVQAVSEGSVPGFGCTDCSCRSHLFMFSQNPLQQRDFVQVIEDFRINRLEALIE*	mmseqs_cdd	nonviral_gene	C9	9307	64457	73764	GCA_009735755.1|PTJT01000008.1@region_64458_73764@tool_cenote_CDS_0010	persistent	direct	high	1139	0.999	GCA_009735755.1_01200