core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	542574	542837	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	1	264	GCA_009932775_1_1_554	GCA_009932775_1_1_554	+	1733500	.	PRK07248	chorismate mutase. 	MTLEEIRQEIDQVDDAIVTLLEQRMNLVDQVVALKKLTGTAVLDSKREDVIFARVADKVENKDYRETVVATFSDILKRSREFQNKNI*	mmseqs_cdd	nonviral_gene	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0001	persistent	direct	high	263	0.996	GCA_009932775.1_00575
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	542837	543211	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	264	638	GCA_009932775_1_1_555	GCA_009932775_1_1_555	+	1733500	.	PRK14221	fluoride efflux transporter CrcB. 	MKEVQNSIAVALSAMAGGWIRYQVALLSVFADSFPLATLLVNYLGTFLLVYIIKGYLSSKVKSQRLILALSTGFCGGMTTFSGLLLDSIKLADSGRYTELLIYLVLSVGGGLAIALWAGKQVKP*	mmseqs_cdd	nonviral_gene	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0002	persistent	direct	high	374	0.997	GCA_009932775.1_00576
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	543208	543534	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	635	961	GCA_009932775_1_1_556	GCA_009932775_1_1_556	+	1733500	.	PRK14229	fluoride efflux transporter CrcB. 	MMWVMLICCGAGALVRYVFSKVNSRAYLPIGTLLANILGAFLIGYFYNHIEDKQLYVILATGFCGGLTTFSTLNAELADLFSDRKKFALYLALTYILGFLAILLGIFI*	mmseqs_cdd	nonviral_gene	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0003	persistent	direct	high	326	0.997	GCA_009932775.1_00577
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	543653	544000	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	1080	1427	GCA_009932775_1_1_557	GCA_009932775_1_1_557	+	1733500	.	PRK05338	50S ribosomal protein L19; Provisional	MNPLIQSLTEGQLRTDIPAFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKGAGISETYTVRKISNGIGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLRALQGKAARIKEIRR*	mmseqs_cdd	nonviral_gene	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0004	persistent	direct	high	347	0.997	GCA_009932775.1_00578
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	544160	545230	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	1587	2657	GCA_009932775_1_1_558	GCA_009932775_1_1_558	-	1733500	.	PDB:1Z19_B	Integrase	MASYRKRDGSWEYRISYKTADGKYKQKSKRGYRTKAEAQRAAAEVERELSGRLEIDEAVTLADYFDQWAEIHKKPHVSTVTWKVYQYTSKKIKKYFGKARLRQITASAYQQVLNDHSATHAQDTVERFNIHIKQAVAMALHEGVITKDFTAFAKIKSIKKGLEAETKFLELPEYLQVIQTCKTKMDVQSYALIYIIAITGMRFAEALGLTWDDIDTEDKTLEVNKTWDYKYGLGFKPTKTKSSIRKIPLNDDALKVLADYKAKNWKENADNRLFSHISNNAVNKSLKKIVGRDVHVHSLRHTYASFLILNHVELLSISKILGHENMNITIEVYSHQLKQLEQESNDEIRNIFDNFG*	common_virus_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0005	cloud	direct	high	1070	0.999	GCA_009932775.1_00580
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	545272	545622	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	2699	3049	GCA_009932775_1_1_559	GCA_009932775_1_1_559	-	1733500	.	PFAM:PF09151.9	zinc-finger-domain-protein	MGIKGFLKAKTIGEYLQAKKDPELMKEIEGRSIGKVLSQAADVAAQQKLEKNAIKCPHCRSKNVMFMQQGKKGFSVGKAVGGAVLTGGVGTLAGFAGKKGKKQWHCQDCGNVFETK*	phrogs_hmm	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0006	cloud	direct	high	350	0.997	GCA_009932775.1_00581
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	545652	546524	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	3079	3951	GCA_009932775_1_1_560	GCA_009932775_1_1_560	-	1733500	.	PDB:2FJR_A	Repressor-protein-CI	MKSSLGNKEVMAANIRRHIDKLGLNVKDFSREIGVSYSTVRDWANAVTYPRIDKIEMMANYFGVNKSDLVEIKAEDSTLDKITTAASKLEEERQEKVLGYCEDQLSEQERGSRELPTVDERFTNVTDIYRRLTPDRQEEARRSMNRQLRSQNIVKMEEIQKAQDLYESLGEEFEDVGLYGEVSAGTGVWVSDEPVEIIKYPVPVPNHDIALRVNGNSMEPMFHDGDVVFVKKTPEVHHGSIIIIIVNDSAYIKKLYRRDDEVRLISLNPQYEDIILNPDDTIEIIGNVIM*	common_virus_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0007	cloud	direct	high	872	0.999	GCA_009932775.1_00582
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	546690	546887	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	4117	4314	GCA_009932775_1_1_561	GCA_009932775_1_1_561	+	1733500	.	PDB:2FJR_A	Repressor-protein-CI	MPEWTLKTLRINNNLSQAEAAEKLGISPSKLSNWEKSKTFPDVPEIMKIEKLYGISYADIKFLPN*	common_virus_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0008	cloud	direct	high	197	0.995	GCA_009932775.1_00583
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	547322	548086	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	4749	5513	GCA_009932775_1_1_562	GCA_009932775_1_1_562	+	1733500	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNEIFNFQGQQVRTVTINGEPYFVGKDTADILGYQNGSRDINRHVDEEDKLKYRFGTSGQDREMIIINESGLYALILGSKLPQAKEFKRWVTSEVLPTIRRHGAYLTDSKIEEVLLSPDTIINLATQLKNERAEKEQLKIELEEARKQTSYLDLILQTKDQLTTTQIAQDYGMSASKFNQLLKDLRIQRKVNSQWVLYKQYLGKGYIASRTFEYIGRDDRCHSKITTVWTQLGRKFLYDVLKEREGILPLVEQE*	common_virus_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0009	cloud	direct	high	764	0.999	GCA_009932775.1_00584
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	548089	548373	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	5516	5800	GCA_009932775_1_1_563	GCA_009932775_1_1_563	+	1733500	.	PFAM:PF09035.9	Excisionase	MSQDYIQAFANDITDRVRSSLVEVSKHFDIEEALPLELTQKQLTQMLGCSTSTLSRYLKFKDFPKIDRGKGTSVKYPRDAVREWYNSHWREFSE*	common_virus_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0010	cloud	direct	high	284	0.996	GCA_009932775.1_00585
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	548393	548686	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	5820	6113	GCA_009932775_1_1_564	GCA_009932775_1_1_564	+	1733500	.	.	hypothetical protein	MLDKYEIPQIDIQCQEFFKDDKSFGMFERHEYHFENGYGASIIHNADSYGLELAVLRKNNNNRWELTYSTPITDDVVGYISGGEELKKLLEDIKNLK*	.	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0011	cloud	direct	high	293	0.997	GCA_009932775.1_00586
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	548696	548956	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	6123	6383	GCA_009932775_1_1_565	GCA_009932775_1_1_565	+	1733500	.	.	hypothetical protein	MEPTLGSQIMGVALIATIAFFAGWYGNRMDARKRAKKERLLRMQAELVAQYEEDMRLYHEEQRQAEMDALAMARKGITPAFEYLEV*	.	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0012	cloud	direct	high	260	0.996	GCA_009932775.1_00587
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	548960	549136	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	6387	6563	GCA_009932775_1_1_566	GCA_009932775_1_1_566	+	1733500	.	.	hypothetical protein	MEQELLDEIDRWRSEYIHLGHELGEVINEQQDRILALSQENKRLKRENWNLKRTKRRK*	.	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0013	cloud	direct	high	176	0.994	GCA_009932775.1_00588
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	549136	549621	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	6563	7048	GCA_009932775_1_1_567	GCA_009932775_1_1_567	+	1733500	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MELKELIENVQQWSKDRGLDKADSRKQLLKLYEEFGELVQGHLKGNIEQVKDSIGDMLVVEIIYCQQSGIELGSLYVEQPTSPHGMTTLLCDIAISIGDLSGNFGPRTNKRNIQEINRYLQIISIRYGTTLEACLELAWNEIKDRKGKMVDGVFVKEEDLK*	phrogs_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0014	cloud	direct	high	485	0.998	GCA_009932775.1_00589
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	549618	550004	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	7045	7431	GCA_009932775_1_1_568	GCA_009932775_1_1_568	+	1733500	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MIPKFRAWVKEDKEMWPIHAIVFDNKTVWVEEPDDENPSGCLDFDDVILMQSTGLKDKNGKEIFEGDVAYNGFRKTIVNYGKQAIEEEFGAIREYVGFNLTLACGYPEAVPMNYEIIGNIYENPELLE*	mmseqs_cdd	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0015	cloud	direct	high	386	0.997	GCA_009932775.1_00590
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	550036	550371	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	7463	7798	GCA_009932775_1_1_569	GCA_009932775_1_1_569	+	1733500	.	.	hypothetical protein	MENIMFWSMFSACLMIIAMTMFALHLQAKVNNDLRRKYNDLRRELIKSFGWDDYEWSNNFRDYAREVETLIKFKKEIERLDIIKKAIDAQNLSDLKNKKEQIEREIKNLGN*	.	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0016	cloud	direct	high	336	1.0	GCA_009932775.1_00591
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	550385	551716	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	7812	9143	GCA_009932775_1_1_570	GCA_009932775_1_1_570	+	1733500	.	5FX8_U	LINOLEATE 11-LIPOXYGENASE (E.C.1.13.11.12), ZONADHESIN	MKNTIKLSAIAFAAVSGLLISNHVLASEVSKTGTEITVTEPTVEVQKQGDSFYDKVDVTVKTDIPDDVEINQGDTLTMPLPQELELETNYEFPVTNNEGAEVGQATANAKENNVTTVFNDYFKEHPLNKSISLNLLTKINSEIVREEGKMDLNFSGTIVEMESGSKGDTNPNEELYKWGYQDKEDPNVVHWVARINYRKATMNRVSVSDTWDNEARYVPGSMKISYLHSANPWTYAWPGNMDMLSMRENGFDYYVGFLNNVLVFEYSTRYATQATVPVNTIKVTANDYWIEHKVDYKWVSGSGTADGKNRPKPIWEIPNEAPQVDKPELNINDIPMMPPAPILDKPELDLNDVPLLPPAPILDLPELVIPDEPKKPELPPKTLEKEPPAPSAKEERKNATDSKLEVSANELPKTGEVSNVFLSIFGISLLISGAMIWQDNKKK*	hhsuite_tools	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0017	cloud	direct	high	1331	0.999	GCA_009932775.1_00592
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	551727	552236	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	9154	9663	GCA_009932775_1_1_571	GCA_009932775_1_1_571	+	1733500	.	.	hypothetical protein	MPNWSEGTMKIRGPIDNVINYISEAFVYIDSQGQKIETTQIVTVSDNFSDFYTITLKPDERESQKKVDGLYIEGTTRGFIDTTRFSLDFWREGEELIVEIQNFKQAWKVDAQEYVWLSKKNEVDLKIFAFEKGSEFTQIIEIIKGKITIDLKQKYLNYNWEVPFNGLGG*	.	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0018	cloud	direct	high	509	0.998	GCA_009932775.1_00593
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	552286	553614	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	9713	11041	GCA_009932775_1_1_572	GCA_009932775_1_1_572	+	1733500	.	PDB:3BGW_F	DNAB-Like-Replicative-Helicase	MTEVSRLIPQDIPSEKAVLGSVFIAPDKLLTAAELVQPSDFYYPANQTIFKAMLELADKGQAIDPLTIRNLLDSRGEFEPAGGMAYLTELVTAVPTSANIEYYAKNVADKAIARSVINDLTDSIAAVYNSDAGIDEIISKTEQSLINASSSRNKSSFKHIHDVIETAQVKIEERASMSSDVTGTPTGFHDFDKITTGLHEDNLIILAARPAMGKTALALNIAQNVAVKAKKAVAVFSLEMGSESLVERMLAAEGNVMSYHIRTGKLSKNEWQRLIYAQAQLAEAKIYIDDTPGIRVTEIRSRARKLAQETDGLGLIVIDYLQLITGNNPKNRQQEVSEISRQLKILAKELNVPVIALSQLSRNVEQRQDKRPVLSDLRESGSIEQDADIVAFLYREAYYDKSDDGPENNKVELILEKNRHGSLGTVQLFFHKEYTKFTNVEE*	rep_hall_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0019	cloud	direct	high	1328	0.999	GCA_009932775.1_00594
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	553617	554396	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	11044	11823	GCA_009932775_1_1_573	GCA_009932775_1_1_573	+	1733500	.	PFAM:PF09681.9	phage-replisome-organiser	MAERRMVSKTVTQTQKFLRLPLEAQALYFHLILNSDDDGIVEAFPVVRMIGSSEDSLGLLVIKQFIKPLGEDMVYFITDFNEQNKIRPDRHKPSIHRDLAVEKLGLEVDGNRLIDTTKTASPKALSSCQTSDGQATDKCPHSIGKDSIVEYSIDKDSVEQSPPYEEIISYLNQKLGTKYSHTSRDTKKHIQARFRDGFTLDDFKYVIDVKVSEWGNDPKMSSYLRPKTLFGTKFESYLNQKLPNGFQKQADVVDERLGF*	rep_hall_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0020	cloud	direct	high	779	0.999	GCA_009932775.1_00595
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	554396	555208	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	11823	12635	GCA_009932775_1_1_574	GCA_009932775_1_1_574	+	1733500	.	PDB:4M4W_K	Replicative-helicase	MDFKEFDKKETSSRVCDRHRCKMWRMPIVVEGKQIILEQCPKCTQGMIEDYERELNKEAKISSKLAESYAIFDKYSLQPPELRGKTLENFQADSRSVDKSALNFAKRMINHYLKDGTGNCIVTGPPGVGKSHLTIGMAKFLNEAFKKMDNPKSVLFISVLRLFTEIEQSFGGQGGLTEADAVDLLSRVDFLFLDDLGKESRMSDSAKQANEWRQRVLFKILDNRQTTIINTNLTSQEIKRIYDPALADRIFKKVSQQSFKFPDDVESRRY*	rep_hall_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0021	cloud	direct	high	812	0.999	GCA_009932775.1_00596
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	555208	555411	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	12635	12838	GCA_009932775_1_1_575	GCA_009932775_1_1_575	+	1733500	.	.	hypothetical protein	MGKEELLKHYRHSLEVYQERLADSEEDKFYMKVHGYRNASYRKELLVKKINEIKKIIKELEDGLRTS*	.	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0022	cloud	direct	high	203	0.995	GCA_009932775.1_00597
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	555392	555676	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	12819	13103	GCA_009932775_1_1_576	GCA_009932775_1_1_576	+	1733500	.	PFAM:PF11753.7	nucelotide-kinase	MVLEQAERESKRNLGISLSMPDSVNRPSHYQGKFGLEAIDVVRNFAGDLTAVQGFYWGNAMKYLLRFQKKNGLEDLKKARKNLDWLIDEMEGKK*	common_virus_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0023	cloud	direct	high	284	0.996	GCA_009932775.1_00598
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	555673	555774	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	13100	13201	GCA_009932775_1_1_577	GCA_009932775_1_1_577	+	1733500	.	PFAM:PF00436.24	single-strand-DNA-binding-protein	MIEFLKTVGFNLLLFFLGFLIGERTNRKDKSDD*	phrogs_hmm	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0024	cloud	direct	high	101	0.99	GCA_009932775.1_00599
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	555767	556165	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	13194	13592	GCA_009932775_1_1_578	GCA_009932775_1_1_578	+	1733500	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MINNVTLVGRMTRDAELRHTPSNQPVATFNLAVNRNFKNSDGEREADFINCVIWGTKAENLANWTKKGVLIGITGRIQTRSYDNQQGQRVYVTEVVAENFQILEKRDNSANNDSLYNQAPNVPDVSDDDLPF*	common_virus_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0025	cloud	direct	high	398	0.997	GCA_009932775.1_00600
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	556172	556387	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	13599	13814	GCA_009932775_1_1_579	GCA_009932775_1_1_579	+	1733500	.	.	hypothetical protein	MKTMSNITTEEKCCNFFIDELKSCYREMEQYEKKIEQLENQKMDGSCRRASEKNLARYARAGVSTEADKEI*	.	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0026	cloud	direct	high	215	0.995	GCA_009932775.1_00601
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	556391	556723	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	13818	14150	GCA_009932775_1_1_580	GCA_009932775_1_1_580	+	1733500	.	PDB:1PRA_A	Repressor-protein	MKLRLKELRKARGISASQLGRAVGIPGNTIFVYERKGIPIFEKTKKIADYFDVNPAYLVGWIDDSGKPEKVIETVEKVVTVPSRIPPYYQQDENGNHINWRQSVRLVPKQ*	common_virus_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0027	cloud	direct	high	332	0.997	GCA_009932775.1_00602
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	556742	557197	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	14169	14624	GCA_009932775_1_1_581	GCA_009932775_1_1_581	+	1733500	.	PFAM:PF05263.10	transcriptional-activator	MEYSPQGIPLLPNIDEKETIERAKAKLEEYPRWRTISCESMEQKVTQTFTFEPRGGGGPSKQVEKLGIRRADATTEMEEIEQAISRIFEIDYRCILSNRYIRHPKMFHDDIAKLLHVENTKYFELLKMALLAFAEQYRNAALVVEKNVVKA*	phrogs_hmm	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0028	cloud	direct	high	455	0.998	GCA_009932775.1_00603
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	557304	557870	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	14731	15297	GCA_009932775_1_1_582	GCA_009932775_1_1_582	+	1733500	.	CDD:cd01192	site-specific-tyrosine-recombinase	MRKVEPIRDLDDLERMKDFLKSKSERNYILFMFGIYSGLRVSDIIPLQVKDVISDRIEVKEMKTGKIRRFPINPELRKAINQYIKGKQLQSYDYLFPSRKKVRIDGARIKHISRVAVYQFLKEAGNHIGLTNIGTHSMRKTFGYHHYKKNKNVAILMQIFNHSSADITLGYIGFSQDELDETMLAFSY*	common_virus_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0029	cloud	direct	high	566	0.998	GCA_009932775.1_00604
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	558458	559723	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	15885	17150	GCA_009932775_1_1_583	GCA_009932775_1_1_583	+	1733500	.	PDB:2JES_G	Portal-Protein	MDLKGIPYLRSKLASVRNRVDMRYKQYAMQYHDNMIGITIPANIREQYRAVLGWAAKGVDSLADRLVFREFENDDFQVNEIFQANNPDVFFDSAILSALIGSCAFVYISKGDGDTPRLQVIEASNATGVIDPITGLLTEGYAVLKRDEYESPVLEAYFTPTETWYFPKTGKEFVIPNPAGVPLLVPIIHRPDAVRPFGRSRITRAGMYYQRYAKRTLERADVTAEFYSFPQKYVLGLSQDAEPMDSWKATVSSMLQFTKDDDGEKPAVGQFTTSNMSPFTEQLRLAAAGFAGEMGLTLDDLGFVSDNPSSVEAIRASHENLRLAGRKAQRSLGSGLLNVAYVAACLRDEWTYLRSQFVNTTAKWEPLFEADANTLTMIGDGAIKLNQAVPGYLDADIIRDLTGIKGSDKPAPVQEAGDGDG*	hallmark_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0030	shell	direct	high	1265	0.999	GCA_009932775.1_00605
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	559710	560489	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	17137	17916	GCA_009932775_1_1_584	GCA_009932775_1_1_584	+	1733500	.	PFAM:PF06152.10	minor-head-protein	MVMVKDIVPELLAEIRDEFDKGVLDSSVLEALLAKLAKGKANYLDANDYAVELGEILSKALRGSVTASKLPDGKMYYNIAKRLLEDVLEVNYDKISEYSGRVQEILNTEAKIRVTVQRPNLNQDRIDGIINRLDSEPDFDSVSWILGDPVVNFSQSIVDDFIRANAEFNFKSGLHPKITRTIVGKPCKWCKSLAGSYDYPDVPDDVYKRHSNCRCTVDYHPGSGRRQNVHSKKWSAEKKAATEKRKLIGLKESKKPIRV*	phrogs_hmm	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0031	cloud	direct	high	779	0.999	GCA_009932775.1_00606
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	560625	562040	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	18052	19467	GCA_009932775_1_1_585	GCA_009932775_1_1_585	+	1733500	.	PFAM:PF03354.14	Large-Terminase	MARKKKLGNQNPTQSVILKYVKKNSKANEAIELYERTGLSCYAWQKNLLLPLMAVDKNGLWIHQKFGYSIPRRNGKSEILYMSEIWALHQGLNILHTAHRISTSHASFEKVKRYLEKMGYVDGEDFNSIRAKGQERIELYSTGGVVQFRTRTSNGGLGEGFDLLIIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTPVSSGTVFTKYRETCLFGKGKYSGWAEWSVSEEKEIDDVEAWYNSNPSMGYHLNERKIEAELGADKLDHNVQRLGFWPTYNQKSAISETEWNELKVEELPNFEGKLFAGIKYGQDGTNVAMSIAVRTKDGRFFVETVDCQSVRNGNDWIVAFLRQADVAQIVVDGANGQRILDDELKDYKIKNVVLPTVKEIITANSLWEQGVFQKTICHAGQPSLSKVATNCDKRNIGSNGGFGYRSHFDDMDISLMDSALLAHWACATTKPKKKQKISY*	hallmark_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0032	cloud	direct	high	1415	0.999	GCA_009932775.1_00607
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	562116	562583	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	19543	20010	GCA_009932775_1_1_586	GCA_009932775_1_1_586	+	1733500	.	PDB:6B0X_d	Major-Capsid-protein	MRMSEFTPITTQEEFDAAIKARLAREKEKFGDYDQLKSRVEELEKEKAGLQSALESSKQSAAEYDKKIAEFESRVAGYETADLRTRIALQNGLPYDLADRLQGTDEESLRADAERLAGFLKPSTKPAPFKETDPVLEKTENTLYKNLIQGLDIEE*	hallmark_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0033	cloud	direct	moderate	461	0.985	GCA_009932775.1_00608
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	562596	563492	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	20023	20919	GCA_009932775_1_1_587	GCA_009932775_1_1_587	+	1733500	.	PDB:3JB5_B	Major-Capsid-protein	MADQLSKGTLFDPKLVTDLINKVKGHSSLAKLSNQKAIPFNGLREFTFSLDSDVDIVAENGKKTHGGASLEPVTIVPIKIEYGARVSDEFVYASEEAKIDILKSFNEGFANKVARGIDIMAFHGVNPRTKQESAVIGDNCFDKAVTQTVNFTTSDPDTNVEDAVKMIQGADNIVSGMAIDTTFSSALASMKNSANERLYPELAWGANTGAINGLPVDVNTTVGLNVGTNKDVAIIGDFANMVKWGYAKQIPLEVIRYGDPDNSGKDLKGYNQVYLRAEIYLGWGILDKNSFARVVKAG*	hallmark_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0034	cloud	direct	high	896	0.999	GCA_009932775.1_00609
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	563496	563714	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	20923	21141	GCA_009932775_1_1_588	GCA_009932775_1_1_588	+	1733500	.	PFAM:PF08198.10	Arc-like-repressor	MEYINVKTGTTIVTENAISGGDWVPIAEYKPLDSLTNAALKEILDEKGITYDNRATKPELISLLEQDNTEVQ*	phrogs_hmm	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0035	cloud	direct	high	218	0.995	GCA_009932775.1_00610
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	563735	564130	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	21162	21557	GCA_009932775_1_1_589	GCA_009932775_1_1_589	+	1733500	.	PFAM:PF09355.9	head-to-tail-adaptor	MTNFATVGDLESLWRSLKFDESNRAEALLGVVSDSLRVEAKKVGKDLDKMVQESPSYANVVKSVTVDVVARTLMTSTDHEPMTQMTESALGYSFSGSYLVPGGGLFIKDSELKRLGLKKQRYGVIELYGQN*	hallmark_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0036	cloud	direct	high	395	0.997	GCA_009932775.1_00611
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	564117	564455	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	21544	21882	GCA_009932775_1_1_590	GCA_009932775_1_1_590	+	1733500	.	PFAM:PF10665.8	Minor-capsid-protein	MGRIKGITVTLIDKVKTGQDDFGHSTFEESEVQVENVLVTPTTTDDIVNQMSLTAKKAVYTLAIPKGDTHNWEDKEVRFFNQRWRTFGIPIEGIESLIPLDWNKKVMVERYE*	hallmark_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0037	cloud	direct	high	338	0.997	GCA_009932775.1_00612
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	564448	564684	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	21875	22111	GCA_009932775_1_1_591	GCA_009932775_1_1_591	+	1733500	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MSNVSFKLDRKGVSELMKSGAMQSILREKAAGIKGRCGAGYEQDIHVGRNRANAMVYAKSNKAKRDNSKNNTLLKAVR*	hallmark_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0038	cloud	direct	high	236	0.996	GCA_009932775.1_00613
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	564685	565020	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	22112	22447	GCA_009932775_1_1_592	GCA_009932775_1_1_592	+	1733500	.	PDB:2LFP_A	tail-completion-protein	MIEIIIKKYLDGRLGVPSFFEHESKMPSSFIMIEKTGNAERNHSGTATFAFQSYAPSMQKAAELNGKVKEAVKGLVELDSISGVHLNSDYNFTDTETKRYRYQAVFDINYF*	hallmark_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0039	cloud	direct	high	335	0.997	GCA_009932775.1_00614
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	565032	565601	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	22459	23028	GCA_009932775_1_1_593	GCA_009932775_1_1_593	+	1733500	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MATSSNVTTAKPKVGGAIYSAPLGSTLPTDATSDLDAAFKSLGYISEDGMTNTNSPESEDIKAWGGDVVNSSQTEKKDTFGYTLIEALNVDVLKEIYGKDNVSGDLSTGIVVKANSKELQDHCLVAEIILKGGIMKRIVIPQGKVTEIGEVSYKDGETVGYETTVTAFPDKQGNTHYEYIKAPTAVPGG*	hallmark_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0040	cloud	direct	high	569	0.998	GCA_009932775.1_00615
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	565604	565876	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	23031	23303	GCA_009932775_1_1_594	GCA_009932775_1_1_594	+	1733500	.	.	hypothetical protein	MSKDKTIKGTTSTGFDFEISQDRLNNYELVEAIAEVDTNPLVLPRLLNLMLGPQAQNLKDHVRTDEGLVPMEALMSEVEEIFANQKPVKN*	.	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0041	cloud	direct	high	272	0.996	GCA_009932775.1_00616
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	565891	566268	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	23318	23695	GCA_009932775_1_1_595	GCA_009932775_1_1_595	+	1733500	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MIKTDEEALICDLAETYRIYDYRQLPAYQAAVFSVGLREDSRIKQAMSGNQASFDTLLAAAMLDRLTTLVWFKTSDGQKGRNRPESIAAKLTGVVEQERMEMVFDSGEEFEKMKQEIIGKNGGES*	mmseqs_cdd	nonviral_gene	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0042	cloud	direct	high	377	0.997	GCA_009932775.1_00617
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	566268	569225	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	23695	26652	GCA_009932775_1_1_596	GCA_009932775_1_1_596	+	1733500	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATELGQAYVQIMPSAKGISGMIKNAIAPEASAAGQSAGMTIGSSIASIATKVIAAAGIGKAFSAAISEGANLQQSLGGIDTLFKDSAEKVKGYANEAFRTAGLSANAYMENVTGFSASLLQSLGGDTAKAADVANMAMIDMSDNANKMGTSMDRIQDAYQGFAKQNYTMLDNLKLGYGGTKTEMERLLADAEKLTGVKYDINNLADVYQAIHAIQGQLDITGTTAKEASSTFSGSFAAMKASAQNVLGKLALGENVLPALQALLDTTSTFLFNNFIPMISNVFSGLGLLLTEGLSKVASQLFGEAFGSAVYSQLSKVSGVFQTFFDMLFGSLNKQDNIDILEALGFSKDTASQIVNIADNIRGAFENIGAIIGNVSEIVGGFVSDLLGIGGSEQGVSALGTAFEVLSGGIKFVSGILKSFTDFIKKNEFAVSYLKSVLTGLLTAFLAFKAVSAFTTAITVAKGAVIAFNAAIVANPIGAIVAAIAGVVAALTWFFTQTKTGQKIWAGFVSWIKDAWQGISDFFSGLWSGISDGAKKIWSGVQAVWAAHVEAVKAIWNGVTEFFSNLWNGIKSAFTSAWTAITQAVMTIVQPFIDVFISLWNNVKDGLSKMWDGVKMVFQGAWEFIKSIVMGAALIIIDLLTGNFSKLGEDMGLIWDSIKNAISMVWEGLKLYFSGVVDAIVGYVKTVFETLVSALQAVWDSITSAASAAWEWLKTTITNIITGFISGAIAAWEGFKNALSSLWNGLKATAEASWNALKTAVVNVINGLVQGAQKAWDDLKNGVSNAVSSVTKVFDGLKKINLFEAGKAIIDGFLKGLKGAFDNVKNFVGGIADWIRENKGPIEYDRKLLIPHGRAIMDSLNEGLQDRFKDTKSLVSGMAGEMSDIFEQTTLTGNVALTGSDGIQDSIVRGSYQLDTLASSEFEKLSKKVDELSERALDIAEKALERPVQMVLDDNTLVAKTGSKFMNWQSEQEEMMNRMRGVII*	hallmark_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0043	cloud	direct	high	2957	1.0	GCA_009932775.1_00618
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	569222	570721	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	26649	28148	GCA_009932775_1_1_597	GCA_009932775_1_1_597	+	1733500	.	PDB:5LY8_A	Distal-Tail-protein	MTEEMTFNGVGMSRFFRVREVVRAIGNDRNISQVDAPLIGTNIQKVSFGAKKITVSFTMLEKTATEIEVLKHELAGVLHVKEPARLTFEDEPDKYYMAIPTGDVSIGNINRACQKGEITFLVPDGVAHSVTYKRVVDYEERQGKMVFAIDNKGTADAYPIITFKANDENGYYGLVSERFAFEAGSIEEADIVPYKHSEILWDYVSDNGIIKGLADGQKNVAILNDNSQNLNGTLAIQSAWGRPHLFLANPGSGPLGNHAGSVTWEIPADSVGEKGALHEYIWWRQIFWVNPANQYGFIKISFTGENGEFLYGVETIKRGNGLNTEYNFLAANGSGSYKLVKQWTFWPTHNPNENPFNKDSGQSDILRRDEEVQLFWNGSYQKFTIPEIKGKKSIKVHVAMGAFGDKPIPTRMYLDSIVYRKDFVNGTKDIPNRYAAGSTLIINSENDSVFLNNLPNLDQVVDGSLWPVIPPGKSEIEILQSSWAKKKPTVSIEFEERWL*	hallmark_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0044	cloud	direct	high	1499	0.999	GCA_009932775.1_00619
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	570721	574008	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	28148	31435	GCA_009932775_1_1_598	GCA_009932775_1_1_598	+	1733500	.	PDB:3GS9_A	tail-protein	MLLTIHDSALKKVAFIDNDKQTTLNFFNDKWTRSLENATSIFQFSVFKRKIKSDTYAEQAYKHLNERAFVSFKYKGRSYLFNVMKTEEDEHIISCNCENLSLELLLEYQEAYKAPKAMRFSEYLDTWGILGVAKLDLGINEVADQQKSLQWEGQETSLARLISLAHNFDAEIEFETKLKSNSQLDRFIINVYKAHSETNQGVGRRRNDVVLKYGKNIKSIKRKVDKTKLYNAIKPVGKKEVSTTTTDKISNPTARTAANSGKKYSGGGLNYAGHPMSAAIVQTILNLCVQYNILPSGMICQLYLESFWGASNVARIDNNWSGMSGSAQTRPSGVKVTTGSARPANEGGTYFHYASVDDFMKDYAYLLAEQTSGGRKFYGVKGKQNIEDYTRGLFRVGGALYDYAAAGYGHYIALMRDIRGGVNRSNGNVLDKLDDLWRQPANQVSQPSQPITQIVKADKTIAVINEMKGLQGRTVGNGQCYGLAAWYSMKLGGPGLGAGVTGFSGRVGAGMAAAYIGTDYAWANFGWSVVRPRGTNELKAGSLANIKAHNAFQGTGQYGHVSIIIANNGSTVTVLEQNYAGRQYVTLGTYNAQAYLGAIETLCYPPELKAGRTVEGTSVTTTGTAPEVSLKEIEYKQTETKQVALSIDPKKKKEWKNAKGEVEFYLKDSLLFAPLSKQLYPSVLSGTETSDNWIRKDMEVDTDSEEVLISTALRNLRKYCYPAITYEADGYFDLDIGDTVKIQDTGFSPMLVLEARVSEQQISFTNPSENKTVFANFQALQNKVSDSLLTRMAKLAEQAIPYELKLSTDQGTAFKNRTGQSLLMATLEKNGKVYEPIIFYKKGDSIIGSGSQMLVHATDFEGTLQVTVEAYLNDEKVATTEVTFSNVADGQTGAKGDKGDPGAQGPPGPKGDKGALDEEQLKQVNDKIDSKADNKLTAEQLNALTESMQLAKAELEAKASIDTVNEWVKSYQDYVKADEAGRAAAEAKLVAATQRVAKIENNLGDMAERWSFLDSYMSASNEGLIIGKKDGSSSVRVESDRISFYSAGSEVAYISQGVLKIENGVFTRTLQIGRFREEQYQLNPDMNVIRYVGGI*	hallmark_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0045	cloud	direct	high	3287	1.0	GCA_009932775.1_00620
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	574011	575996	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	31438	33423	GCA_009932775_1_1_599	GCA_009932775_1_1_599	+	1733500	.	pfam05895	Siphovirus protein of unknown function (DUF859). This family consists of several uncharacterized proteins from the Siphoviruses as well as one bacterial sequence. Some of the members of this family are described as putative minor structural proteins.	MVRANFSGAYGHNLQLEVISEGYRQDIAGNFSVINVQVKLVSNGYAAIYDGANKSLAITVGGETRNITADATIGQNQNKLIFDNEFRVPHDQNGTKTVNINARLDINVSGYGSSSVGFNRRLPDIPRASSGNDVTAVIGQPVTININRKNDAFKHAIWATYGSFNKQITTANVDTSFSWTPPLELCEQTPNSASGFGNITIITYDGNREIGRDVKRLNLSIPDSVKPTLTGFTLTDGNAIAANIVSGGEHFIKILSDIRVNFGSASGVYGSTITGYYAEIVGKNQSTTTNGGGLGLMNYDGQVVIRARVTDSRGRTSNAIERTVTILDYFPPILKFDVARTGLNGGTLTITRTAKVTPLIVNGSQKNKMTLTFKVKPLADKNYTSDTGPAAGSWTSIAELVNSPANLSGQYPANKTWEVVGKLEDRYTSTEFAAIVTTEGVVISYSQFGAGINKIWERGALDVKGDIYVNDKLIQMHQLTQKNGTAIYAYGKDFDHERTTGVYFKNGTENNNPARQYGWLLVLNSNNECFQMFFPSIATAEPAKRVLLAGKWSAWSTNARSDHANLKRIEWTSTGAAGVHYKRQGDIVSLRIEIKDVTGNVSLGRIPNELTPIQGNAAMLNVPVFEGGSSNDRHLQINPDGGMTLLASNDKYIGTQINWSI*	mmseqs_cdd	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0046	cloud	direct	high	1985	0.999	GCA_009932775.1_00621
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	576015	576602	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	33442	34029	GCA_009932775_1_1_600	GCA_009932775_1_1_600	+	1733500	.	pfam07104	Protein of unknown function (DUF1366). This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 130 residues in length. One of the sequences in this family, from phage Sfi11 is known as Gp149. The function of this family is unknown.	MSKLQFNRKSWIYSSSNNEVEGTHVILTNAEGAFYPVLLPKEAIDLPVEELEKKALEVVYQENFPDRAKKEQDEEINKKFQEADKKEQEATLQRAELKELLELVTYIALGISGGLDINSYTALAQKIDAPVNGKRYTGPTFVTIDYPYTTNPKWQKGNRTIVKYTGMTGYNYTGQSAEDMLKSGAWTIVLPNISN*	mmseqs_cdd	nonviral_gene	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0047	cloud	direct	high	587	0.998	GCA_009932775.1_00622
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	576623	577264	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	34050	34691	GCA_009932775_1_1_601	GCA_009932775_1_1_601	+	1733500	.	PFAM:PF14386.5	nuclease	MSHWERTINGYNLDKFDTFETDGQYDMPILKAIDIKPTSLIGFNYVCSSKKRDGAVHFFLDDYQFERVWNRPELYLDKFREFEAIIAPDFSLYLDMPVAMQIWNCYRARLLAQWYQSQGVNVIPNITFSDKMSYDWCFDGMPKGSTLAISSVGTAKRPDARELFKNGLFEAVRRLNPKRLLFWGKIPEFDFGDLEVIGYTDKRIERMRKEHGR*	phrogs_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0048	cloud	direct	high	641	0.998	GCA_009932775.1_00623
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	577254	577652	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	34681	35079	GCA_009932775_1_1_602	GCA_009932775_1_1_602	+	1733500	.	.	hypothetical protein	MGGRGAMLGDKKRTKVMSLDEFLGPKGLASPISGWLDDKWRGNKNFSSGNQREKFTKEARKNIDEYHQKRNAAIKEYKKLVASGKIREPTSLEKSLKTAQGHSDNKAVQAARRMLEKRGYDWKTGKKIKKSN*	.	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0049	cloud	direct	high	398	0.997	GCA_009932775.1_00624
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	577675	577956	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	35102	35383	GCA_009932775_1_1_603	GCA_009932775_1_1_603	+	1733500	.	PFAM:PF04531.12	holin	MKPEYQLLMTVGGFIITVYGFYNVLRAKSIEQATKINSLELRLGFLEQQTKDHTRRLDDHDKQNQALVAMTEQIKNLTEDVKELKIMIEKKGS*	phrogs_hmm	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0050	cloud	direct	high	281	0.996	GCA_009932775.1_00625
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	577960	578244	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	35387	35671	GCA_009932775_1_1_604	GCA_009932775_1_1_604	+	1733500	.	PFAM:PF04531.12	Phage_holin_1	MNKINWKVRFNSKNRQFYLRLILALALPVLAYFGIKFEDLTSWNAVGSLLVKFINNPYLVGLTIVNILNIIPDPTTKGFGDSADALNYTEPKQD*	common_virus_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0051	cloud	direct	high	284	0.996	GCA_009932775.1_00626
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	578260	578964	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	35687	36391	GCA_009932775_1_1_605	GCA_009932775_1_1_605	+	1733500	.	PDB:5UDN_B	lysin	MTTQKQLLDKLENVVNQRMEVPTNPYGGQCVALIDNILQYQGLYKLNFSYVNAIDCLDRAASLGLKVTRFNGSNNPPVGAVFVSNCLPYHEFGHIGFVVAHNPDGTITTIEQNIDSNADALYNGGWTRKVVRNLSSDGTFSYVNWQAPAQQMLGWFELPFDAPKADIVIKNLEDLKLMKEFIVTNKKYGYGVFVGGKYVGLSDIKSVNSMKDRLGFAIVDLGDDDFLRFSKAHG*	common_virus_hmm	common_virus	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0052	cloud	direct	high	704	0.999	GCA_009932775.1_00627
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	579248	579964	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	36675	37391	GCA_009932775_1_1_606	GCA_009932775_1_1_606	+	1733500	.	1Y7I_B	salicylic acid-binding protein 2	MAYYFIGGLGCNVYYPQDFLTALELPIVYLDLYCQEIRQEADLEEWFALQVDLTQEMTLIAHSLGADFAVYLASVFPSVKKLILLDGGYLNLDKICNLEEEIADALAYLEKTSYRSIEEAVSLERDEAKHWSENCSKAVKANLVFNKKAQVWKLGISQQIVKNLLTLRRLMYGRLSKLSDRQIHLFIPQKTESDPSWKVQALQGLPAYVQLAEVKDCGHNIYGDNPLGLAKMVRSVLD*	hhsuite_tools	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0053	shell	direct	high	716	0.999	GCA_009932775.1_00628
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	CDS	580108	580635	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	37535	38062	GCA_009932775_1_1_607	GCA_009932775_1_1_607	-	1733500	.	.	hypothetical protein	MKKTFQAFLLAASLLSLAACVQSQSKKPAQSSDKAKTSKKSSSSSKVSSKSSSKSDSSSSSSSSSDSSSIPSTNSSSSSTIVDGKEVSITSEGAFITFPEIGKVVKKDDGYLFASQGLWVMIRTDGQYMSITSEGRNINNIDVDPSPVNDVYAKFGVSGTADIDAIIEKAKSSNN*	.	hypothetical_protein	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_CDS_0054	shell	direct	high	527	0.998	GCA_009932775.1_00629
GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote	cenote	tRNA	544041	544112	GCA_009932775.1	APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775.1_APLR01000001.1	GCA_009932775.1|APLR01000001.1	GCA_009932775_1_1	GCA_009932775_1_1@C45	1468	1539	tRNA-Arg	tRNA-Arg	+	1733500	.	tRNAscan-SE score: 62.0	Arg	NA	tRNAscan-SE	.	C45	38062	542574	580636	GCA_009932775.1|APLR01000001.1@region_542575_580636@tool_cenote_tRNA_0001	.	.	.	.	.	.