core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2543682	2544185	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	1	504	GCA_010223255_1_1_2101	GCA_010223255_1_1_2101	-	2724313	.	COG2143	Thioredoxin-related protein  [Posttranslational modification, protein turnover, chaperones]. 	MMNRHFIFALCTVLGFSVSGISMAQSVPTDKEAAAKAAKAAKVKFRWGKSLKSAQKQAAETGLPIVLLFTGTSWCGFCVKLEKEILSKKDFKQGMDGVAIGVKFEFGSSDFSKSKEAKTYNITGVPAMVVVDADGKELGRTGYVPGRTPAQYVEFFKKYAPKTAEGK*	mmseqs_cdd	nonviral_gene	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0001	persistent	direct	high	503	0.998	GCA_010223255.1_02173
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2544854	2545735	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	1173	2054	GCA_010223255_1_1_2102	GCA_010223255_1_1_2102	-	2724313	.	.	hypothetical protein	MIDSIDNSMAAPIRDAEGSGAVSPETDALSETAVQTEPFPPLLGEDGGFAPDWYARFDELKGMEKSLSKFKTPEALAKSYAELERLRRYPGVENEEQMARFRRLAGLPESEEEYRLERPESTPESEWNAGLAERMARTAYRYGVPPEAMNALQETMAQAYNEAREHMEDARMEMEMQAEQSLQQEWGSNYERNMGRAAAVLRRLASETGVDADALLDNPGLGSNPDAIRLLYQASRLLDEAPLHHTGNAAPSPAEEAMRMESDPSHPLYEAYMNVNHPNHRYANELYDRLTTR*	.	hypothetical_protein	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0002	persistent	direct	high	881	0.999	GCA_010223255.1_02175
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2545728	2546009	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	2047	2328	GCA_010223255_1_1_2103	GCA_010223255_1_1_2103	-	2724313	.	.	hypothetical protein	MNQDTTLQQEASVREARFKRRQLLRVFDTPDGRETLSFLEARFQTDLPVFQGSPGNYDPLDAMRRDAYREIFLYIRRQLQLAIKETTEEEKND*	.	hypothetical_protein	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0003	persistent	direct	high	281	0.996	GCA_010223255.1_02176
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2546006	2547640	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	2325	3959	GCA_010223255_1_1_2104	GCA_010223255_1_1_2104	-	2724313	.	CDD:pfam12236	Head-Tail-Connector-protein	MEERTAELNSVYKSLAAQRAPWETWWDRLRDYVLPRRLNREGEVSLPNRDAMDRMTDTTAVEACQKLASGHMSYITPSHDVWFKWSAPDDRGGDEAEAWYNQCSEIALKELSVSNFYTEIHECFLDRVALGTGSLFTGTSSDGRLLFTNIPCGQFACAENAEGRVDTYVREFTYTAHQARSMFGVKALGPKAREVLERGGNPYATTLRFLHVVRPRTRRSRRREQASHMPFESVYLSLDDQVIVEEGGYMEFPYLVTRFLKWGSGPYGLAPGRLVFPAIQQVQFLNRILDTLGEVAAFPRILELANQIGEVDLRAGGRTVITPEAASLHLPREWATQGRYDVGMDRLAQKQDAIRRAYYLPMLELWSGHRGNMTATEVMARENERVLMFSPSFTLFVSDLYSTMTRIFSLLFRMGKFPRPPRAVLRVGRDGSVAVGEPRVVYQSKIALVLRRLQSEGMDRSLQRLNMMMQAAPDLADHVDWDHCFRLSARVDGAPESMLRPWADVRAMRKERADLQQGASLAPAEEDPYASLNPLLDQLTAIQK*	hallmark_hmm	common_virus	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0004	persistent	direct	high	1634	0.999	GCA_010223255.1_02177
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2547649	2547864	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	3968	4183	GCA_010223255_1_1_2105	GCA_010223255_1_1_2105	-	2724313	.	.	hypothetical protein	MGFMKPSTPSASAPEQTIPVKAESVEQEVGEDYQARERQRQGMISTILARRHSSAGQGEVNPRTLLRKTLG*	.	hypothetical_protein	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0005	persistent	direct	high	215	0.995	GCA_010223255.1_02178
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2548180	2548800	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	4499	5119	GCA_010223255_1_1_2106	GCA_010223255_1_1_2106	+	2724313	.	PDB:5MU4_D	Tail-tube-protein	MINESLLQPDTPSALDICNAALSKIGEAPLDALIANESTASRLCVLHYHPARRETLCMARWTFAATQTTLDSVSAQAPNSLTPYQFTLPADCLRVLDVECSEWKMQGRRIHASCAPLPLSYIADIENADQFDPLFMDALATRLAEKLAMPLTGNQSLRQNLNQEFHKIILPQAATVNAVQCFSNDSHPLLDLLRKIKSPSCPEECE*	hallmark_hmm	common_virus	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0006	persistent	direct	high	620	0.998	GCA_010223255.1_02179
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2548845	2549144	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	5164	5463	GCA_010223255_1_1_2107	GCA_010223255_1_1_2107	+	2724313	.	PFAM:PF05158.11	transcriptional-regulator	MLMKALDFIQIFASNVRRLDFRLSSAQVILAVIAGYRRHSTITEATRLHPNTVTNILQDLIAQGYVNRIGDSRPYVYRPTADGEQLAGNLLDKNTFPGT*	phrogs_hmm	hypothetical_protein	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0007	persistent	direct	high	299	0.997	GCA_010223255.1_02180
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2549141	2549404	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	5460	5723	GCA_010223255_1_1_2108	GCA_010223255_1_1_2108	+	2724313	.	.	hypothetical protein	MNNPLLSTEEKRRWLARVFRDEDGEYSQADKFKALVEDTKLAALQQEEEEFKRQREIGAAPQDPILALLQAIPPAELNLHQHPLSEK*	.	hypothetical_protein	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0008	persistent	direct	high	263	0.996	GCA_010223255.1_02181
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2550136	2551002	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	6455	7321	GCA_010223255_1_1_2109	GCA_010223255_1_1_2109	+	2724313	.	.	hypothetical protein	MNNQIKLFQSTHSLRSATYAARRAFNVEAVSIHALLAECDGRLPTRKSPAPGFQSTHSLRSATFCSDYGLPMYDVSIHALLAECDFTNHYPANGRYCFNPRTPCGVRRAVNRAVYCFRKFQSTHSLRSATIPLDSRFTLSHGFNPRTPCGVRLRPARPSTLRMMFQSTHSLRSATSHMGGLRKRCRFQSTHSLRSATLCPQLLGTCGRCFNPRTPCGVRRTRMMTPPPCHGFQSTHSLRSATNLNSIKVRKLAVSIHALLAECDVMQRKRYISHTGFNPRTPCGVRHM*	.	hypothetical_protein	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0009	.	unmatched_CDS	none	0	0	.
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2551530	2552609	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	7849	8928	GCA_010223255_1_1_2110	GCA_010223255_1_1_2110	+	2724313	.	.	hypothetical protein	MTWKGIRLFAKSFNPRTPCGVRRFRCWWRGQAVRFQSTHSLRSATKLKPLKKGNNYVSIHALLAECDFSGFVIQHQGYCFNPRTPCGVRRSGRPKYTDSGAFQSTHSLRSATRNGPYTCYYWQFQSTHSLRSATRKATYPRCHESFQSTHSLRSATHNRKLFSIRDIVSIHALLAECDYHKPETLTICYCFNPRTPCGVRRVTAVWSILPTGVSIHALLAECDNVEAYAYILDAFQSTHSLRSATICYRPAYLSPHSFNPRTPCGVRHIAPSFILRGPLFQSTHSLRSATVTAVWAILPTGVSIHALLAECDSYTSGMRDLRGGFQSTHSLRSATSDCGSYRDFCGVSIHALLAECDIR*	.	hypothetical_protein	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0010	.	unmatched_CDS	none	0	0	.
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2553469	2553759	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	9788	10078	GCA_010223255_1_1_2111	GCA_010223255_1_1_2111	-	2724313	.	COG1343	CRISPR/Cas system-associated endoribonuclease Cas2 [Defense mechanisms]. 	MYILITYDVATDDKAGQRRLRQVARACENVGQRVQNSVFECELTPAQLVDIRNKLLKIIDNESDSLRIYHMGSNWHHKIEQLGKEKSYDISGPLII*	mmseqs_cdd	nonviral_gene	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0011	shell	direct	high	290	0.997	GCA_010223255.1_02182
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2553774	2554793	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	10093	11112	GCA_010223255_1_1_2112	GCA_010223255_1_1_2112	-	2724313	.	TIGR03640	CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	MKKHLNTLFVTLEGCWLSKDGDTVKVNAEGTCLLRVPLHNLEGIVTLGWDIGVSPYLMGACAERGITLSFCNPYGKFLAGVQGFMKGNILLRRDQYRWADDEARWVGVVREMIGAKIANCRSLLLRAQRTYGKDLSEEVDRLAAFCRMARGCNSGDMLRGIEGSAAETYFSCLSHCQRTEDPELVFESRNRRPPKDCFNALLSFLYSLLCHDARSALESSGIDAAAGFLHRDRPGRPGMALDLMEEFRAPLADRLALTLINRKQISSDDFDKEESGAVFLKEDSRKKVLNAWQERKKTVLVHPFLQEKTTLGLLIHIQALLLARHLRGDLDCYPPFIGK*	mmseqs_cdd	nonviral_gene	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0012	shell	direct	high	1019	0.999	GCA_010223255.1_02183
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2554790	2555305	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	11109	11624	GCA_010223255_1_1_2113	GCA_010223255_1_1_2113	-	2724313	.	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family [Defense mechanisms]. 	MTENRGRKRVLRSLHISSVQWGIHGIADVVEAVYVQKGSGVVSMTPVEYKVGKPKPHRADEVQVCAQALCLEEMFEIKVPFGFLFYGKNQRRLKVSFDEELRFLTARVIRDAREVLTGMVTPLPFYSKNCKSCSLVNDCLPDVCREHRQTMKARVDSVFEDSLETSEADDL*	mmseqs_cdd	nonviral_gene	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0013	shell	direct	high	515	0.998	GCA_010223255.1_02184
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2555582	2557966	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	11901	14285	GCA_010223255_1_1_2114	GCA_010223255_1_1_2114	+	2724313	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MNGENPPIAHRKWLDNGICVDEPLYTCPNDKGKIPGHLNMVRYYAGQLIKELPASLRGAWLYWVEAAALWHDLGKFSLEFQKYIKDKQISPHSTETVELNGGKKVDHSTAGAKHASTHWGTSKASYGDMLAYIIAGHHAGLPNGPDLFFERFHKKIPDWESYAPADLYSFTEPSPPRLWHEKSHTPDRNLGFAVAMQIRMLFSFLTDSDFLGTEHFMCQEKRDMRPSWPQNILAQMSLRLEAHLGNMESARNLTPIQRLRREIHHQCLSRAQVPQGIYQLNVPTGGGKTLSSLSFALAHAQHCHMSRVIYVIPFTSIIDQTAKTFREIMAPLDEKFGMECVLEHHSNLAADKDTERVRLMSENWDAPLIVTTSVQFFESLFSNKPSVCRKLHNITNSVIIFDEAQNLPSHLLAPCLEAMKTLEKDYGCTLVLCTATQPTLEHKKEFPIGWPAGELTSLLGNDFERRLENAMQRVTIQHLGRMDQNALIRHWNTLPDQSALFIVNTTREAQFLFDAFSSQSASHILHLSARLCPIHREKVIQTAKQKLEQGKNIILIATRVIEAGIDISFPTVYRACAGIDSIAQAAGRCNRHGEREGKGLVFVYESTDFPLPDILDDLRASASATREILAQEPEAALLSPEISNRFFRIYYNNRKNQTNLWDSKNIREMALLNPVSEKVFKSLRFKDINKSFKMIPDASHSVMITIDPEACHIRERLKILDSQGLYPNKSLRREIQRYSVQIYDREWVALQKHGMESYIDGTINILHPSPSVYDEHKGILSLQQSDPAYIGFIC*	common_virus_hmm	common_virus	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0014	shell	direct	high	2384	1.0	GCA_010223255.1_02185
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	CDS	2558062	2558682	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	14381	15001	GCA_010223255_1_1_2115	GCA_010223255_1_1_2115	+	2724313	.	cd09752	CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family	MTPSAAIGILSAIYWKPEIRWHIDKIHVLKPIKLVSIRRNEVSAKATPPKSDVIKNGGEARLGLLVEETRQQRSSTILQDVDYLIEAHFSVLKEQENINTQAKHYEMFKRRAMKGQSFHQPYFGTREFPVSFEWWDQSTPPPSSLPPDQQNRNLGMMLHEVEFVPDKKGKIISSLDGKKLSAVPHFFPAELKSGILHVPSLNRTNS*	mmseqs_cdd	nonviral_gene	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_CDS_0015	shell	direct	high	620	0.998	GCA_010223255.1_02186
GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote	cenote	tRNA	2544359	2544433	GCA_010223255.1	CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255.1_CP027011.1	GCA_010223255.1|CP027011.1	GCA_010223255_1_1	GCA_010223255_1_1@C221	678	752	tRNA-Val	tRNA-Val	+	2724313	.	tRNAscan-SE score: 67.8	Val	NA	tRNAscan-SE	.	C221	15001	2543682	2558683	GCA_010223255.1|CP027011.1@region_2543683_2558683@tool_cenote_tRNA_0001	.	.	.	.	.	.