core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	448983	449156	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	1	174	GCA_011058695_1_1_394	GCA_011058695_1_1_394	+	1379823	.	.	hypothetical protein	MNLKNNRIFSILKMKVPATALFCALLVIVTCIVFIKYYQSAFFADLQINLDIYKSLR*	.	hypothetical_protein	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0001	persistent	direct	high	173	0.994	GCA_011058695.1_00436
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	449247	450248	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	265	1266	GCA_011058695_1_1_395	GCA_011058695_1_1_395	+	1379823	.	COG0827	Adenine-specific DNA methylase  [Replication, recombination and repair]. 	MEDLEHLNELYLSFEEVVDILRKELNVTFTEALVETFDNLEHKKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTLKAADVDNFNSTQLPTPRILATIVALLWSKIVPQTAKEVIDPAIGSGTLLFSLIDQLRFLNHSKNSFILTGIDNDPAMLDLADVRSYLNKLPIDLLRQDALQPWLTGKKDVAVSDVPVGYYPLDNNAKNFDNCQLSGHSFAHILFIEQIIKNLNPSGYAFLIVPKMILSGKEAADFMTWLTKKVNILAVVDLPDDLFANMKYPKSILVLQNHGQKMQLRKVLVTKLGSLKDKSSLVKLNVELNNWVNE*	mmseqs_cdd	nonviral_gene	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0002	persistent	direct	high	1001	0.999	GCA_011058695.1_00437
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	450259	451470	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	1277	2488	GCA_011058695_1_1_396	GCA_011058695_1_1_396	+	1379823	.	COG0282	Acetate kinase [Energy production and conversion]. 	MEMIKKILAVNAGSSSLKFKLFSLKDEQVLAHGQADRIGLPEATFVLKLANGEVYQDKTEIRTQEDAVEKLLSWLTKSKIVNDLSEIAGVGHRVVAGGEYFAHSTLIDQDNLHKIYELNEYAPLHNCHEADGIKAFMKLLPNVPQVGVFDTSIHQTLDQVHYMYSLPYEYYEKYKVRKYGAHGTSVRYVSQRIASILKRPLDELNMVICHLGSGVSITAMKNGQSYDTSMGFSPLAGVTMSSRSGDIDPSALQYILGKETDLNFDQMIDILNNKSGLLGISGISPDMRDIRKAISQGDERASLARNIFINRIVRYIGAYYLELQGIDVIAFTAGVGENDIGIRKEIMDQMSCYGLIPDYDANQINGIEKIVSAPNSKIVAMVIPTNEELMIARDVVRIAKISD*	mmseqs_cdd	nonviral_gene	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0003	persistent	direct	high	1211	0.999	GCA_011058695.1_00438
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	452022	453143	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	3040	4161	GCA_011058695_1_1_397	GCA_011058695_1_1_397	-	1379823	.	PDB:1Z19_B	Integrase	MPKQDKRVEKYETKKGIRYRFKTYVGTDINGKKVWATRSGFTSYTEAKYELDKLKLEGVDSFVKQKQIKVNDLFTQWFDTYQTTVKESTAHKTYEMYKIHIKPKYGNAYVDKITPASLQRFANALSKKLVKYRTALGILERTLNLGISLGYLKVNPFSKILIPKKTTRKRRDTSINFLSREELDTFLKKAESINHLYYLFFLLLASTGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKYIVQTPKSPKSLRTVPLSTHLKEELLKYKDNQKIDTEIIFHTIDGNYLRLSKPTRWLDTIYKQLPDLKRITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSKKKVAQSINDLNI*	common_virus_hmm	common_virus	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0004	shell	direct	high	1121	0.999	GCA_011058695.1_00440
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	453472	454272	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	4490	5290	GCA_011058695_1_1_398	GCA_011058695_1_1_398	-	1379823	.	PDB:4U7B_B	Mos-transposase	MRMARSTYYLEINKADVVANRNQELLAEITEIFEQHKHRYGVRRVHRELINRGYRINHKRVQRLMHEAGLFGKRPKEKYHSYKGEVGKVADNIINRDFSTTAPLQKWTTDVSQFNFSWGKCYISPVLDMNTNEIISYDLSTSPNLEQISRMLDRAFEKFPSVEGLIFHSDQGWQYQHAYFRNTLKERGIIQSMSRKGNCYDNCIMETFFGRLKNEMYYGYEKDYSSFEEFSKAVEEYIDYYNNKRIQAKTKWMPPVQYRIASMCSA*	common_virus_hmm	common_virus	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0005	shell	direct	high	800	0.999	GCA_011058695.1_00441
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	454290	454859	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	5308	5877	GCA_011058695_1_1_399	GCA_011058695_1_1_399	-	1379823	.	COG2963	Transposase and inactivated derivatives [Mobilome: prophages, transposons]. 	MRYSYAFKRKCVEMYYQGLYPDTPDGICGKEFHRTIRKWVRIEESCGPEALKHKAQNKVWSPEDKYALVARVLSGESNKSVALTSGINEGMLYQWVRKYKIYGYNGLISKPKGRKSKDPDMKKIGTREPKKLNESEYEELIRLRAEITYIKAENEVIKKEIALREEKEAVRLKAKKQQSSKNSVKKDTH*	mmseqs_cdd	nonviral_gene	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0006	shell	direct	high	569	0.998	GCA_011058695.1_00442
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	455553	455741	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	6571	6759	GCA_011058695_1_1_400	GCA_011058695_1_1_400	+	1379823	.	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family [General function prediction only]. 	MPIKPSKMVRLLLKAGFKEVPKGGGHRRFRHPDGRMTEVPMHGKELTPYTQRKILEQAKIKL*	mmseqs_cdd	nonviral_gene	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0007	shell	direct	high	188	0.995	GCA_011058695.1_00443
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	455791	456186	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	6809	7204	GCA_011058695_1_1_401	GCA_011058695_1_1_401	+	1379823	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MSNNLLIYPIIVTECHDEAGHYYGAISPNIPGMVTDGQTLQELVIHAEDAIATMISGTKYPEVQDLKEWTLGPNDFVVYVTVNMLKWEAQHEKTVRRNITLPEGLNNWAKDNKINVSKVTTEALRSMQNTN*	mmseqs_cdd	nonviral_gene	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0008	shell	direct	moderate	383	0.967	GCA_011058695.1_00444
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	456291	456758	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	7309	7776	GCA_011058695_1_1_402	GCA_011058695_1_1_402	+	1379823	.	PFAM:PF07141.10	Small-Terminase	MRARYTEWLEKDKLLLIQGWKRDGLTDEQIARNMSINSRTLEKWKANYEPIRQAIKRGRTEVNFIVENKLLKKALDGNTTAIIFWLKNNWRDKYNDSTLGPEERKMIQAKMRKLEADTRVSEAKALLAEQVSSQSNAELERMLKLLEVEGTEDGD*	hallmark_hmm	common_virus	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0009	shell	direct	high	467	0.998	GCA_011058695.1_00445
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	456748	457977	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	7766	8995	GCA_011058695_1_1_403	GCA_011058695_1_1_403	+	1379823	.	PDB:5OEA_B	Large-Terminase	MAISDLLAPKQEQVLRSYLNDKWKTLILSGAVRSGKTYIDNLLFLMELRRISKLAKKLNKPNPMYILAGFSADTIYKNVIAEITTTFGLNIKFDRSGHFRLFGVEVVKAYTGSERGRDSIRGMTAWGAYINEASLAKASVFSEIQKRCSAPEARIICDTNPDAPTHWLKKNYIDNTDPKAGIKTFFFTFDDNPTLDDDYKEKLKASTPSGVFYDRDILGLWCTGEGVVYRDFDQSTMTIDRYKLPTDLTYYVGVDWGYEHTGTLIVFADDSQGNTYLIEEHAHKHRFIDYWVDLAHDVQQKYGSTIPFWCDSARPDNLNEFLIHGIRAYNANKAINSGIEAVGSLMKAKHFFVVKNSADNWLNEVYQYIWNEKTGEPVKENDDSMDAMRYAIYNQHNKAKINLQRNTLF*	hallmark_hmm	common_virus	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0010	shell	direct	high	1229	0.999	GCA_011058695.1_00446
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	457991	459421	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	9009	10439	GCA_011058695_1_1_404	GCA_011058695_1_1_404	+	1379823	.	PDB:5A20_A	Portal-Protein	METLGTKGQVLSNGMFVYPKDELMDETEVNAFIDKNRGFTAKIYDRNMQYYLGKHDILKKTNATGIELNKIVDNIPKYLVDTYNGFFTGISPKITLDEDSLNNNLQNWNRSNSFFDKLSEISKQVDIYGRSYAFIYQNESADTRVAVVPPTQCFIVYDDTIEHEPLAFVRYYKNSENLLQADIYYGNATQTYSEGKLLDSGLKSVYGMVPAVEFFENEERQGLYTDCISMIDALDDTLSQKQDTIEYFANEYMYVLGGGIDLNEEELSYMRTHRLINVPTANAADIKIGFLERPDGDNVQENQLQHLNDKIYQTTGIPNLSDSNFAGNASGVAIRYKLLAMENKASNKERKFTQALRALYKVVFSIDSVINVSDAWEDLKFKFTRNLPANLADEASTANSLNGIVSKETQLGALSIVDDPKAEMERMEEEQDQQLKKSLEVTGADYEKLDDTNQEQPEANQKSIKSPFSNEEVDND*	hallmark_hmm	common_virus	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0011	shell	direct	high	1430	0.999	GCA_011058695.1_00447
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	459414	461006	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	10432	12024	GCA_011058695_1_1_405	GCA_011058695_1_1_405	+	1379823	.	PFAM:PF06152.10	minor-capsid-protein	MTKVYWQQRMQGEKSFAKWIEQTENRLFDYYQVRYNELLEHLNAEIAKEYAALTRSTGMNLDLAKQTVSNLDIKAYSQLAKKVVREAHEARKNGNPKAFKGYSAEINRRMKIYNATMRINRLELLKARLATWLLEVNAELDADLRKALSDGYVEHVTKQAGLLGTTVSSSAIDQGIQEAIAYMYDNATFSDRIWKNQDVIKASIDKVVSQGSLGGYGLEKMINQLHKFTNANYSNAKRIVRTEMTRVMDKAQEDVFKKADVKLVFWQVEKKPCAACLAIHDNDVGYGKGVYPIDDSPKPVEDTHPNCRCLRSAFTEYEAWQLQWAKSKDKGVYLDQYGRVRYSDGRLVEDYLEAEKLYNQDLKNKSKKAKPAGAIVYDSSLSLSEKLKNKELEKSRLEAKRQKTFAQKYYATLRNYKRDFLVSKIAKNTGISSNIVIKAIEHVLDSKYNLDIDGKMVFQTFEPDADMAHSLQNLYLNNYDEADILLLHHENLEAYYMDKKGMSYVKAHKLTNKRYDYQDKIDQLKEEGKR*	hallmark_hmm	common_virus	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0012	shell	direct	high	1592	0.999	GCA_011058695.1_00448
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	461011	461295	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	12029	12313	GCA_011058695_1_1_406	GCA_011058695_1_1_406	+	1379823	.	.	hypothetical protein	MITLKFMSIELLEDNLNEWVYSIYTDYQEGQIAINKHNFDGKLTSFEKASKRVRIKKETVEYEIYYRIVKLMKSQPGIKEYYWLHSTKKIEPLV*	.	hypothetical_protein	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0013	shell	direct	high	284	0.996	GCA_011058695.1_00449
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	461329	461820	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	12347	12838	GCA_011058695_1_1_407	GCA_011058695_1_1_407	+	1379823	.	PF15644.6	Papain fold toxin 1, glutamine deamidase	MLKRRGFDVTAIANPLYNKDARRDLGLLTANAEKMKDKVYNSASSFFIKKDIDIKRFVPEKAIDEELLNGLQPGQRGIISWGWAGRNVGHTINVERTSDGLKYVDAQIGQTADSWKGLKYPIRVGRYRIGGRMLSSFRWYRSDDKDFDERLLDLLVKGNEGQK*	hhsuite_tools	hypothetical_protein	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0014	shell	direct	high	491	0.998	GCA_011058695.1_00450
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	461817	462074	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	12835	13092	GCA_011058695_1_1_408	GCA_011058695_1_1_408	+	1379823	.	.	hypothetical protein	MIDKDKAIEIAQKYAIDHLLVRNCKIEDLQATVIDDYFTIKVEPIEVTQDTIVYTNKSNLVTVDKRTGDTYLIDEDGYKPMVSRL*	.	hypothetical_protein	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0015	shell	direct	high	257	0.996	GCA_011058695.1_00451
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	462151	462411	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	13169	13429	GCA_011058695_1_1_409	GCA_011058695_1_1_409	+	1379823	.	.	hypothetical protein	MLDIKTAQDKAKQAIIDNYNLSKLISEKDISLNIVDVYYTFSFEISSNKLPKPEMVGYPDYVQVNCETEEVHFINSYLYDDLISKL*	.	hypothetical_protein	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0016	shell	direct	high	260	0.996	GCA_011058695.1_00452
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	462527	463132	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	13545	14150	GCA_011058695_1_1_410	GCA_011058695_1_1_410	+	1379823	.	PFAM:PF14265.5	head-scaffolding-protein	MEDNNLKNNQNTVDPKDSDVNPKDSDVNPKDDKGKSKTGDVVSKLKERLSKKTAENSSLADQVADLRVQLQKFTQQDKANDEQASELDEAKKQLEALQLENQRIKASRQVEKDLQDAGLLSYSSDGVLEMLVGDTDKVTTQRTMAFIKFAQSLETGIRKEYHTGHTPRTSGKASLTRDEINKIADPAKRLEAIKNNLSLYN*	phrogs_hmm	hypothetical_protein	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0017	shell	direct	high	605	0.998	GCA_011058695.1_00453
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	463146	464018	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	14164	15036	GCA_011058695_1_1_411	GCA_011058695_1_1_411	+	1379823	.	PDB:5TJT_F	Major-Capsid-Protein	MTVDANTIKTTDLVAQSIDFTEQFSQGLSTLLNVLGVTRKQALSQGSVIKLYKTEGTLVSGDVAEGDVIPLSKVTRKVSSTQELKFGKWRKVTTAEAIQKAGFNQAVQATDQKLLRLVQEQVKTNWFNFLTTATGTTTTNGVGFQTAVANAIGQFNVVWEGYGVQPVAFVNPLDVYTYLAKASVSTQTAFGLNYIENFLGFSAVILSASVPAGKIYVTAPDNINLAYADLHGDLSGAFNFTTDQIGLIGVAHNELLNALSYETVVTTASILYPEISAGIIVSEIKNEASK*	hallmark_hmm	common_virus	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0018	shell	direct	high	872	0.999	GCA_011058695.1_00454
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	464002	464439	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	15020	15457	GCA_011058695_1_1_412	GCA_011058695_1_1_412	+	1379823	.	PFAM:PF05135.12	head-tail-adaptor	MKQVSSWKGTIMDYLANIKALLMLPDSAKDDLINVIIDNTKRALRVRLGLSASDAVPDELSYIVVEVSVRRYNRLKNEGMVSYSQEGESIAFNSNDFADFEEDIKAWKDKNNKANEVRFINPYARALSNRYSSRANGRLLNDFSN*	phrogs_hmm	common_virus	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0019	shell	direct	moderate	404	0.922	GCA_011058695.1_00455
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	464423	464791	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	15441	15809	GCA_011058695_1_1_413	GCA_011058695_1_1_413	+	1379823	.	PFAM:PF05521.10	tail-completion-or-Neck1-protein	MTFQIKWDGLDQLTEELRTMASGKALEKASVALGSQWQKEARAMERAKYTHGYWTGNQQRNTLVYWENGKKTIVLDPKTEYSVYTEYGTRKMDAMPVFKPTLDMTKKRAPSVIEYYLKKDIK*	phrogs_hmm	hypothetical_protein	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0020	shell	direct	high	368	0.997	GCA_011058695.1_00456
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	464791	465171	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	15809	16189	GCA_011058695_1_1_414	GCA_011058695_1_1_414	+	1379823	.	PDB:4ACV_B	Antigen-protein	MHISLALFNYFFAKCQELGFDTYEVLPDDTVPYPFVRVNQATLTGGSTKTGFAGEITINLDLFGTLYQKLELSEMQQKLEAVGLTGIWLSDTSLVAVVDDYQAVNLLDTSTTTPLNHTNLSFKFRY*	common_virus_hmm	common_virus	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0021	shell	direct	high	380	0.997	GCA_011058695.1_00457
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	465188	465634	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	16206	16652	GCA_011058695_1_1_415	GCA_011058695_1_1_415	+	1379823	.	PDB:5A21_H	major-tail-protein	MAQPQKINGSNVLGLFRLEKNAATEKAAIINYQTSLDFEFKRDSDSTSTKTGSLSTSGSLETTIKFSFVDNISKVSDDIRTSILNAEPAELWQVQLDRKNSEGKYFGCYVRGTVSSDSAKNDDGDNSTRECEFKCDGTPHLHYIRKEC*	hallmark_hmm	common_virus	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0022	shell	direct	high	446	0.998	GCA_011058695.1_00458
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	465589	465750	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	16607	16768	GCA_011058695_1_1_416	GCA_011058695_1_1_416	+	1379823	.	.	hypothetical protein	MRWNPSSPLYKERMLIYQHSGSLKLRFDYKKRALIQCLFILGGKYAKEKKLTH*	.	hypothetical_protein	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0023	shell	ambiguous	low	47	0.29	GCA_011058695.1_00458
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	465905	466012	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	16923	17030	GCA_011058695_1_1_417	GCA_011058695_1_1_417	+	1379823	.	.	hypothetical protein	MMINLNSSDIMDAKETSKIWKTVDCNYSWNASNHW*	.	hypothetical_protein	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0024	.	unmatched_CDS	none	0	0	.
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	466278	466523	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	17296	17541	GCA_011058695_1_1_418	GCA_011058695_1_1_418	+	1379823	.	PF14076.6	Domain of unknown function (DUF4258)	MFVKTAHAKIRQSQRNISNIDIEKALRNPIHKESIITDELGRKSQKIIGDFTTVVINPDTMEVITTYPTKKSKRQRYLKGR*	hhsuite_tools	hypothetical_protein	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0025	persistent	direct	high	245	0.996	GCA_011058695.1_00459
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	466528	466725	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	17546	17743	GCA_011058695_1_1_419	GCA_011058695_1_1_419	+	1379823	.	.	hypothetical protein	MFTKEEIKYMKSLGLNLDFHKPLLNEDYERIEDIVSHQLQVYGFDKNYNPTTIGILCENILDKFD*	.	hypothetical_protein	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0026	persistent	direct	high	197	0.995	GCA_011058695.1_00460
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	466903	467061	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	17921	18079	GCA_011058695_1_1_420	GCA_011058695_1_1_420	+	1379823	.	.	hypothetical protein	MKVRYLGNTEGISLTKNKIYEALDYEEGFLRVIDDTGEDYLYDSEKFQVIEE*	.	hypothetical_protein	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0027	persistent	direct	high	158	0.994	GCA_011058695.1_00461
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	467184	467792	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	18202	18810	GCA_011058695_1_1_421	GCA_011058695_1_1_421	+	1379823	.	pfam09605	Hypothetical bacterial integral membrane protein (Trep_Strep). This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. It is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.	MENSKLKVKDLVNIGVFVVIYFLILGISSMTFVFLGMTMVKSTLALLCFALAPFVTGIILGTPVILLMAKLQKPWGFFTFGILSPILLWLSGHNSFIPAIGGILLAAIAEFILYLGKYKSFKAMLIAYACYNIWTMLPLADILFVRAKRVKMIQKMGLALVNNVFTTPNVLLILMFALVGGLLGALLGKKMLKKYFTKAGIL*	mmseqs_cdd	nonviral_gene	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0028	persistent	direct	high	608	0.998	GCA_011058695.1_00462
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	467792	468481	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	18810	19499	GCA_011058695_1_1_422	GCA_011058695_1_1_422	+	1379823	.	6ZG3_D	Energy-coupling factor transporter ATP-binding protein	MQFIHDDNRHNLHPLTKFFAVICLSFTPFYRVSALYCWVVVATIAILFALQFNYRDAIKAVIYFGFLSLLPSDMNFRHIGLIHVLFSLILIIKAFYLPCLSAKLLIKTTDVGSLLSALSQINVPRTIRIPIAVIFRFFPSFKQEYQNMHLAMKVKNITWRTPIKYITYMWIPLLILSSNIADDIAKVAETKCIYNPIKRTHYFSIKFGLMDILYLLSLLLLVTKGCKLC*	hhsuite_tools	hypothetical_protein	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0029	persistent	direct	high	689	0.999	GCA_011058695.1_00463
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	468475	469851	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	19493	20869	GCA_011058695_1_1_423	GCA_011058695_1_1_423	+	1379823	.	COG1123	ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones]. 	MLTIRNAYLSYPDRKIVLKNLNLNIKTGECVVLTGISGSGKSSILNLINGLATRYDNCKISGEVLFQHHDIVKLELYQIAQLIASVFQNPKTSFFNVNTTMELLFFLENNGVSRQEMQKRLSDLLNLFPIANLLNRNIFELSGGERQILSIATAYISGVQCVLLDEPSANLDSKYIKIVAKMLAILKKRGVTLLVAEHRLYYLMDVADRVLVVANGTISQEYSISKFKQLSEKKLYAMGLRTRQEVQLKSFSPMTSGEFYIKSLYKKLINHQILKIRDLSLKKGNIYGVVGLNGSGKTSLIKALLGVDKKCQVAIYLDDKLLSTRQRIKLSSWVMQDVNNQLFTDSVMAEIKLGIGNISVDKINQVIKKLKLSSLLDRHPLSLSVGQKQRVAIASTILSQKTLLYFDEPTSGMDYLNMIAISKLLRDSSTNNNIIIIVSHDVEFLNQTVDHVIKLSSN*	mmseqs_cdd	nonviral_gene	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0030	persistent	direct	high	1376	0.999	GCA_011058695.1_00464
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	469909	471528	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	20927	22546	GCA_011058695_1_1_424	GCA_011058695_1_1_424	+	1379823	.	cd11333	Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins. The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	MTPWWKKAVIYQIYPKSFQDSNGDGIGDLPGIINRLDYLSKLGIDAIWLSPVYQSPGIDNGYDISDYQAIDPQYGTMDDMDNLILEAKKRNIKIIMDLVVNHTSDQHAWFVEARKNKENQYRDYYIWRDPVDGHEPNGLQSAFSGSAWQYDKTTKQYYLHFFAKQQPDLNWSNSIVRDKIYQMMNYWIDKGIGGFRMDVIELIGKDPDKMVRENGKMLHPYLQEMNQKTFGQSDLLTVGETWNATPKIAEDYSDPARHELSMVFQFENQTLDQKDGCSKWDLKPIDLVELKKILVKWQTELDFKHAWNSLFWENHDIPRVISRWGNDQKYRVVCAKMFAIVLHLMHGTPYIFNGEEIGMTNSPVKNINEVEDIESINMYNERLDAGYDKDELLHAINVKGRDNARTPMQWSDALNAGFTSGKPWLRVNSNYTDINVKQCLADPDSIFYTYQKLIELRHHNQIVVDGDFQLIEETDAQILAYYRILGDQKWLVVANLTDKEKPFNCHEQYQKVLVENYTTPSNLQNIILKPYQAFVVTIA*	mmseqs_cdd	nonviral_gene	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0031	persistent	direct	high	1619	0.999	GCA_011058695.1_00465
GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote	cenote	CDS	471568	472785	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C40	22586	23803	GCA_011058695_1_1_425	GCA_011058695_1_1_425	-	1379823	.	PFAM:PF05382.12	peptidoglycan-hydrolase	MKKRKFVRNLSKGLILSVATLCGESLLNVQQSKADTRTSMNGSTLRIVYNGRGKVNLLNSKFKYQNQYVANGTNWKVWEKLVSNQGTLYRIGNENQWVPEQYTDKKSTTQAPKKPTTNTNNNVHAKTTLPTANVVKIKAATGVNVYTAPVNGRYVKHLNPNTSWKYFKIEHGNDGYTWFNLGGAQWISSKLTDQPQLVKNISRVTQAPKTVEKAKTISKAKSTYNPVQNLTNIYIPKHVYIPKHNNMSIYDMGLNNGPVNIDSAISFMRQLKNNGVQYSMFGKRDGSDGTADCSGAVYAALRAGGASSLGYIPNTDSMHNWLLKNNFTEVAHSTRIPNQKGDVVIFGTKGLSGGAAGHVVLYTSPYTIIHCTDRDDSHSGVLEEPASNIEGCYTSMGGFYVYRQI*	common_virus_hmm	common_virus	C40	23803	448983	472786	GCA_011058695.1|CP049223.1@region_448984_472786@tool_cenote_CDS_0032	persistent	direct	high	1217	0.999	GCA_011058695.1_00466
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1021106	1021411	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	1	306	GCA_011058695_1_1_913	GCA_011058695_1_1_913	+	1379823	.	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module [Defense mechanisms]. 	MANTNVVYARIDTTLKENAESILNQLGITPSSAIQMLYSQIVLQKGMPFELRLPVNKPIALGSITRDELDKELQKGLDSLRSGKSYSADEVDLFFAKEYGA*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0001	persistent	direct	high	305	0.997	GCA_011058695.1_00978
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1021408	1021734	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	303	629	GCA_011058695_1_1_914	GCA_011058695_1_1_914	+	1379823	.	PFAM:PF15781.4	RelE-like-toxin	MSTTYNIIYSPQAFLDLSELYEYIRFTLQVPKTAEKQVSRIRKTIRSLNTMPMHHPLVEWEPWHSMGIRRVPIDNYTAFYLVDEDKCSVTVVRIFYAGRNIKNIINNK*	phrogs_hmm	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0002	persistent	direct	high	326	0.997	GCA_011058695.1_00979
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1022000	1022632	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	895	1527	GCA_011058695_1_1_915	GCA_011058695_1_1_915	-	1379823	.	PDB:2FJR_A	Repressor-protein-CI	MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLLDKDNAIDLSIIKKPIDVVKYGLNAKLGVRKKIKIKEQIIRDEYADAEIIMLTVTKFIPNSSEKFMDNFIGWITTLFSDIPLFDTFAFGKAVESIGSAQYYLVNKKEKQFFVLITDEYIISRMMRVKFTDKKMCVGDKEFTQVGKLRDK*	common_virus_hmm	common_virus	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0003	persistent	direct	high	632	0.998	GCA_011058695.1_00980
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1023213	1023437	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	2108	2332	GCA_011058695_1_1_916	GCA_011058695_1_1_916	-	1379823	.	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module [Defense mechanisms]. 	METIGIPRATAIDMFYRQIILNKGIPFSLTIPKSLPAQDDMDEKTFNALMAKGYDQAAQSDVYPIDDVFKELDR*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0004	persistent	direct	high	224	0.996	GCA_011058695.1_00981
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1023723	1024334	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	2618	3229	GCA_011058695_1_1_917	GCA_011058695_1_1_917	-	1379823	.	pfam03596	Cadmium resistance transporter. 	METIVSALLVFVSTSIDYLVVLTILFASQGKKGLKSIYVGQYLGTGLLVLASLIAAYFLNFIPQDWIIGLLGLIPLGLGIRAIFVDEDIDEEDIEEKITGDGSKILAFTSLTVAMGGDNLGIYIPYFTGKSLIEISISLVIFALGILILCKLSQNLSSISAIGETVEKYEKVIVPVVFIGLGLYILIENGTINYFIGQVLKVV*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0005	persistent	direct	high	611	0.998	GCA_011058695.1_00982
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1024932	1025156	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	3827	4051	GCA_011058695_1_1_918	GCA_011058695_1_1_918	-	1379823	.	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module [Defense mechanisms]. 	METIGIPRATAIDMFYRQIILNKGIPFSLTIPKSLPAQDDMDEKTFNALMAKGYDQAAQSDSYPIDDVFKELDR*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0006	persistent	direct	high	224	0.996	GCA_011058695.1_00983
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1025358	1025792	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	4253	4687	GCA_011058695_1_1_919	GCA_011058695_1_1_919	-	1379823	.	.	hypothetical protein	MRNKTIFCKTIFQSCLVMLLLLGSLFSLAGCTDDEEKAKLASYHWETVAVSREEFRIPENYMNKDELYLFVSRDILDSHQDLSKVTLGDKHIKLVNSSFNLPGPGLKALFLVGKFDLKDKPGSAVLKVPGFKKKGNVAIGYKKK*	.	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0007	persistent	direct	high	434	0.998	GCA_011058695.1_00984
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1026031	1027002	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	4926	5897	GCA_011058695_1_1_920	GCA_011058695_1_1_920	-	1379823	.	4ITR_A	Adenosine monophosphate-protein transferase and cysteine	MAAKYDDVQELLRKKADINARLSLLAYDGTPEIKNRGNGKYLYTRKRVSGKLTSTYVGVYSDDLYNLLLRNASESRQLRKELRAVVRQLANAGYSNSELSADLVNNIAFARANLKANIYDQAVLEGVATTFPQTEEIIDNGKVFGVSASDVQKILNLKHAWEFILDEDVVLSRSDYYMLSHIAKIVNEGFFLDGGRIRGVPVAIGGSTYIPPIPNEIDVKEKIRNIVEDEGDSENVEGRVRRKEPIDIAIELCVYCMKSQIFLDGNKRASVIFANHYLISHGIGLLVIPENKVPEFKKLLVEYYEGEDLQVIASFMREYCWRH*	hhsuite_tools	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0008	cloud	direct	high	971	0.999	GCA_011058695.1_00985
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1028067	1028483	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	6962	7378	GCA_011058695_1_1_921	GCA_011058695_1_1_921	+	1379823	.	PF12676.7	Protein of unknown function (DUF3796)	MKKKVSILEIVATKIVIALLVAGYYWMWSRSDWMPEYRQYSAYFGGFLFLILLAHYHRVHKYKKERFDELAIKTLRKCDAICLKVLTVLMVIVAYAGGILGHVNAMSTAMMGWLIIGSIIAIAMLRTMLFLILNSKGV*	hhsuite_tools	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0009	cloud	direct	high	416	0.998	GCA_011058695.1_00986
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1028486	1028689	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	7381	7584	GCA_011058695_1_1_922	GCA_011058695_1_1_922	+	1379823	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MALITKLKDYREKANYTQSELAEIVNVRRETIVHLENGRYNPSLKLAMDIAKIFKVKVEDLFEFTDE*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0010	shell	direct	high	203	0.995	GCA_011058695.1_00987
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1028883	1029059	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	7778	7954	GCA_011058695_1_1_923	GCA_011058695_1_1_923	-	1379823	.	.	hypothetical protein	MIKYESDKWKIFLKSERHDISEYYEKLVRKYIKKIKVYEDKFSVTFKSEISVDIERAS*	.	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0011	persistent	direct	high	176	0.994	GCA_011058695.1_00988
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1029037	1029147	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	7932	8042	GCA_011058695_1_1_924	GCA_011058695_1_1_924	-	1379823	.	.	hypothetical protein	MKLDTKTANEIDELKGKKQQLLIEKAGQEDDKIRIR*	.	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0012	persistent	ambiguous	low	24	0.216	GCA_011058695.1_00988
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1029258	1029842	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	8153	8737	GCA_011058695_1_1_925	GCA_011058695_1_1_925	-	1379823	.	.	hypothetical protein	MVDELRKEIAIQQKKGLPFIMASVIIWLLIVLVSILDININMKNLLVFCCSCPLLPLAWLIGKLIKVDIFSKQNPLGQLGFIFTLNQMIYLLIVMWVFSAVPEKMIMVYAMVFGAHLFPYSWLYQSKGYTVAAISIPMISLILGCALNGTTVAVAACILEIVFACVLHMELKKMGDDYNKSQFVELSKDQVSMK*	.	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0013	persistent	direct	high	584	0.998	GCA_011058695.1_00989
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1030008	1030442	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	8903	9337	GCA_011058695_1_1_926	GCA_011058695_1_1_926	-	1379823	.	COG0295	Cytidine deaminase [Nucleotide transport and metabolism]. 	MDIWDTMYEKAKPQFHPEEVSPFVYAHHVVCAIEAENGEIFTGFCIESCSGVLNLCAERVAALNMYVNSGQTKVKRLIAFRDKAPYGAGSGMPCGACREFFYQLNEENEKMEIMEDFEQRKTVTLKELMPNWWGKDRYAEAKAK*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0014	persistent	direct	high	434	0.998	GCA_011058695.1_00990
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1030640	1031125	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	9535	10020	GCA_011058695_1_1_927	GCA_011058695_1_1_927	-	1379823	.	cd04688	"Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & ""house-cleaning"" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required."	MEHNCGFINDKKAFRYRAAAIIVEEGCVLFARNDKDDYYYSVGGAVHMGETSEEAVKREVFEETGLNYEVDHLAVIHENFFIGSSGLKGVDFHELTFYYMMKPMGKRDFTSQSTTESGAKETMHWLPIDELDKCKAYPTFMKEYLKSEHRGVEHIVTDERD*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0015	persistent	direct	high	485	0.998	GCA_011058695.1_00992
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1031203	1031430	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	10098	10325	GCA_011058695_1_1_928	GCA_011058695_1_1_928	-	1379823	.	.	hypothetical protein	MIMTVLRGELTIRQSRALIRTFKQMKDFIIENQYFIGSKELVQIAIQTNKNTTDIAKINDKISTLATKEDLKKAI*	.	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0016	shell	direct	high	227	0.996	GCA_011058695.1_00993
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1031716	1031937	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	10611	10832	GCA_011058695_1_1_929	GCA_011058695_1_1_929	-	1379823	.	.	hypothetical protein	MNSVIFCFEGANYVGKGTLLKKLSNNFLCQNFELGTTEKLQDYEWWFNNSSPYELIDEIIGLVTKRERNLQFL*	.	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0017	shell	direct	high	221	0.995	GCA_011058695.1_00994
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1031930	1032337	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	10825	11232	GCA_011058695_1_1_930	GCA_011058695_1_1_930	-	1379823	.	cd04669	"Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & ""house-cleaning"" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required."	MRASMFVIDKTGDYVVIIKRYKDGREYYVVPGGKVVVGESVQHAAIREISEELDLNINESDIIGSLNGDDNVFFLAKTGYKQGGLSIHGEEKSRSNLDNVYQPIWIRISEISRLEIFPKFDKNRFSKIVGDKCNE*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0018	shell	direct	high	407	0.998	GCA_011058695.1_00995
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1032471	1032716	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	11366	11611	GCA_011058695_1_1_931	GCA_011058695_1_1_931	-	1379823	.	.	hypothetical protein	MDFSSVIPNFDFIFPALPTKFCIAFIYYTIIKNKKEVRNEENFKTCVNFVVGNGYHYYCLWIKYLGVHLLKNIIINRILIS*	.	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0019	.	unmatched_CDS	none	0	0	.
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1032914	1033465	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	11809	12360	GCA_011058695_1_1_932	GCA_011058695_1_1_932	+	1379823	.	TIGR01716	transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis. [Regulatory functions, DNA interactions]	MQYIRKQYLSQNIDNIALLLSNSSNYNLNPFEKTMIKSILHTLDNKIIPSEEELVKLTDYLFKVEKWGYYEIIILGNCARTINYNSYYLLTKEMLNNYIYSSLSKTNKRLVAQLAINCLILSVDKKEFSTCTHLISKIERLLDSELNYYEQTVFLYATGYFEFKMNSTNSVEKMNKLSMYLIF*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0020	cloud	direct	high	551	0.998	GCA_011058695.1_00996
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1033913	1034125	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	12808	13020	GCA_011058695_1_1_933	GCA_011058695_1_1_933	+	1379823	.	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module [Defense mechanisms]. 	MANTNVIYVRIDTTLKENAENILNQLGITPSSAIQMLYSQIVLQKGMPFELRLPTNKQEKPLGLGNLTRD*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0021	persistent	direct	high	212	0.995	GCA_011058695.1_00997
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1034534	1035475	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	13429	14370	GCA_011058695_1_1_934	GCA_011058695_1_1_934	-	1379823	.	.	hypothetical protein	MLSLRKKYKILIDYSDFNIHDAKRYFNGMTELEFTGKELYESVITCGMPYVLPTEKILISRIEEIMYKFYLLNTALEVDSHRYLIFSKKMHYLDSTECAYLNYYIGMFITKLVSSKIFGFDYLVHLNIVKRYMSVKFNSPKRPDLIAFNKYVNIYSIFEAKGRTRLDNRTLIKAKKQVQAIKYVNGAKPSNGIVSAVVHDNKSMVKCYLRDPEPKGSETLNIPKSLLIWLYYEPIYLLFKEEKNIEKCANCMNVPIRINDNETLTISMNTKLYQLLREYEESNIRNCYKHIDENFDEKFLEDFSKISEPLKME*	.	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0022	cloud	direct	high	941	0.999	GCA_011058695.1_00998
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1035826	1036314	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	14721	15209	GCA_011058695_1_1_935	GCA_011058695_1_1_935	-	1379823	.	COG4804	Predicted nuclease of restriction endonuclease-like (RecB) superfamily,  DUF1016 family [General function prediction only]. 	MDSYVLEFIDAPELGNEREFQKSILENLKNFILEIGKDFSFIGNEYRVQVGNHDYYIDLLFYHRGLSCLVAFELKIGEFKPEYIGKMNLYLEALDREVKKQTENPSVGVILCASKDDEVVEFALSRSLSPTMVSEYTLKLIDKNLLQRKLKEYIDIAGETNE*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0023	cloud	direct	high	488	0.998	GCA_011058695.1_00999
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1036362	1036562	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	15257	15457	GCA_011058695_1_1_936	GCA_011058695_1_1_936	-	1379823	.	cd03770	Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.	MSTLWGRVHTMLTLKGAPTLAKVGSSISKFNRMIEECEKGNLDIILTKSVSCFGRDTIVRKSSNKT*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0024	cloud	direct	high	200	0.995	GCA_011058695.1_01000
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1036780	1037526	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	15675	16421	GCA_011058695_1_1_937	GCA_011058695_1_1_937	-	1379823	.	.	hypothetical protein	MSNYAYRDIERKIVLYSSQAIKEDRNETFYCPNPKCKAKLYICAIEGSKSAYFRATKPMYKHILNCPFGTSSSEFDKNKFDESEFVFNNAIDGLLVVTGNPKKEKKIDGHSIGEPRAHPLRTIKQIYSMCKSMPANLKYGDKEIGEMLLDDRSEYRYPRGCFGKKIIEAAVKGKLYDNKKKEIYLVAPMYSQKYSFILSFFDEITYKTIRSEIYNNRDKIIVVAGEWKSSGIYNITRIYGRKQVAIGK*	.	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0025	cloud	direct	high	746	0.999	GCA_011058695.1_01001
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1037543	1037740	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	16438	16635	GCA_011058695_1_1_938	GCA_011058695_1_1_938	-	1379823	.	PFAM:PF07508.12	DNA-invertase	MVVNAGGKEGQIYKLNNFHPAIISKEMFDAVQEEKHKRSNVVVDDNGIHRNTTKYSSKNKNRILT*	phrogs_hmm	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0026	.	unmatched_CDS	none	0	0	.
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1038209	1038514	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	17104	17409	GCA_011058695_1_1_939	GCA_011058695_1_1_939	-	1379823	.	PFAM:PF06074.12	Portal	MMNQIFRETMMTHLLLWCNAYVQIIRNGKGEVLGLYPLMPDRMKVDRDDKGQIYYEYFVSDSDEGTEKQGRVKLNELDVLHIPGLGFDGLVGYSPQVAARH*	hallmark_hmm	common_virus	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0027	cloud	direct	high	303	0.99	GCA_011058695.1_01002
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1038495	1038692	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	17390	17587	GCA_011058695_1_1_940	GCA_011058695_1_1_940	-	1379823	.	PFAM:PF06074.12	Portal	MGSSSSERRVNERSAMQMTAVYSCVRILSEEVASLLLHVYERTEIGTVKTIEHPLYKVLYDESNL*	hallmark_hmm	common_virus	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0028	cloud	ambiguous	low	18	0.091	GCA_011058695.1_01002
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1038738	1039781	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	17633	18676	GCA_011058695_1_1_941	GCA_011058695_1_1_941	-	1379823	.	COG3177	Fic family protein  [Transcription]. 	MRFFNYENLARSKWDSEIINLLSQIHEHKGKQELFLTRKPAVLDKLVEIAKIQSVEDSNRIEGIVTTAVRIKELMNQKTTPRNRDEEEIIGYRDVLNMIHESYEYIPINSNYILQLHRDLFKYSEKEIGGRYKNTQNSIVEKDKEGNVIERFKPLSPYETPGAIEQICNELNIAFDKKDVDSLLLISIFIHDFLCIHPFSDGNGRMSRLLTTLLLYRQGYVIGKYISLESKIEKNKDSYYIALEKSGIGWHENKENPVPFIKYILRTILAAYIDFEERVDYVDEKVPTIDLVKNAIDSKLGKFTKSDMMELVPSVGKATIENKLKKLTEEGYIERYGKGRATFYVKK*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0029	cloud	direct	high	1043	0.999	GCA_011058695.1_01003
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1039920	1040231	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	18815	19126	GCA_011058695_1_1_942	GCA_011058695_1_1_942	-	1379823	.	PDB:6Z6D_A	Large-Terminase	MGGCSNGSKLRKYGIYRCSIWAGFKDMSLPMKELMKLTLEQKIAHGGNPVLRWNMDNIFIKTDSAENIKADNKEKSTEKIDRAIICGNANTESVYDSRGILFV*	hallmark_hmm	common_virus	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0030	cloud	direct	moderate	222	0.712	GCA_011058695.1_01004
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1041080	1041496	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	19975	20391	GCA_011058695_1_1_943	GCA_011058695_1_1_943	-	1379823	.	.	hypothetical protein	MNCRGHDTRQRIVRDYEIHPEAHIKLLTNQQKHSDAGATIEDEYYVFSAKRKADGKKKVIQCGMGAARDFLELINHKGLPLFNPIIGDPSVNNRKEYDNIGNGNLQSEKWNETAKQLYNAIMWLIILWDAKPDTPLFD*	.	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0031	cloud	direct	high	416	0.998	GCA_011058695.1_01005
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1041594	1042451	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	20489	21346	GCA_011058695_1_1_944	GCA_011058695_1_1_944	-	1379823	.	PDB:4BQQ_A	Integrase	MDKIDELNKDVIVIHPQRVIKDYAFGVYARVSTNRKEQLDSLAVQVSGLTRLAAAHMTWFVADVFLDVSSAKVGSSRNEFNRMIDECEKGNLDIILTKSVSRFGRDTKEGLEAIRKLKACGTRIIFEADKIDTETVDDELLISVVQACSQAENDWRSENIRFGLKHRAEDGTSGLYSRACYGYKKDKHGMLIIDEEQAKVVRAIFDWYLEGLSVVGIIERLKSKGDNSPKGKDTWSKRAVESTLTMRKYTGDVAIAVSGNADCQYLNTDHHTGIISKEKFEAVEL*	common_virus_hmm	common_virus	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0032	cloud	direct	high	857	0.999	GCA_011058695.1_01007
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1042632	1043123	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	21527	22018	GCA_011058695_1_1_945	GCA_011058695_1_1_945	-	1379823	.	cd04693	"Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & ""house-cleaning"" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required."	MAEIWDAYDKEFNKLKNITLVRGEPIPDGMYHLVGEVIVKHIDGTYLIMQRDFEKKFGGMWELTAGGSALQYETPLECAVRELKEETGIEASKIMEIGRFVQDVYHSLYVEYLCVTDCKKNAIALQKGETVNYKWVDKKSLLEMSQDELVSSRAIKLIKKVDI*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0033	cloud	direct	high	491	0.998	GCA_011058695.1_01008
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1043170	1043508	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	22065	22403	GCA_011058695_1_1_946	GCA_011058695_1_1_946	-	1379823	.	.	hypothetical protein	MDNKKFVAETKDVRLTVKRADTFGVSFVNCEQDILRVEEVQNVIRLIQTKKVSASNWLRWFTQGMPEIVVSLPHDVEVCEVESDFNQVLITDIEIGKLYVEVNNGFVSTGER*	.	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0034	cloud	direct	high	338	0.997	GCA_011058695.1_01009
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1043959	1044987	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	22854	23882	GCA_011058695_1_1_947	GCA_011058695_1_1_947	-	1379823	.	cd07062	Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported.  It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	MIKKIGIVSLSSGVLGESFVEHEIKIGLDRLNKLGVEIEFLPNSLKGIDFLKNHPEARADDLLLAFEDDTIDMILCAIGGEDTYRLAPYLFEGDRLKNIVKQKLFLGFSDSTINHFMLNKLGIKTFYGQAFLTDVCELSDNMLAYTEKYFLELIKTGKIKEIHPSEVWYEEREDYSEKAIGIEMKSHTNTGFELLRGNPIFSGKILGGCIESIYDMFDNSLFEDTVEICSKYDLFPNLEEWENKILLIETSQEKIKPDLYRKMILALKDYGLFDVLAGVLVGKPQNEIYYEEYKSILLEEITNKYLPIVYNINIGHSTPRCIIPFGVEAEVNVSRQTISFNY*	mmseqs_cdd	nonviral_gene	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0035	cloud	direct	high	1028	0.999	GCA_011058695.1_01010
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1045242	1045400	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	24137	24295	GCA_011058695_1_1_948	GCA_011058695_1_1_948	-	1379823	.	.	hypothetical protein	MDEKTRESEFRPPKMKKDNYPKIILSLDTLDFSKSGFKHINAEQFLNGKVDL*	.	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0036	cloud	direct	high	158	0.994	GCA_011058695.1_01011
GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote	cenote	CDS	1046005	1047093	GCA_011058695.1	CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695.1_CP049223.1	GCA_011058695.1|CP049223.1	GCA_011058695_1_1	GCA_011058695_1_1@C88	24900	25988	GCA_011058695_1_1_949	GCA_011058695_1_1_949	-	1379823	.	PF07179.12	SseB protein N-terminal domain	MGMKYSEVGFRAFYHNFVAVPIKDNLKEVVEDFPGADKANYILTYGYIDHTEGLTLEVLATSVKHDESFIFGVGNTEKSSKIRIGSVMNDECFYFDDKDEKMYKSYADKIEMLEIYNAGDEVEESRNMHFLDESRNPEYPDDVLVYLVKDGNNPEGCWVRIEGLAEDHIFGTLLNEPEQDFGCHEGDKIPFYVKHNDYKDISLWSNMNQSSIITAEDLEDGTMLESAIHTFNEEPTEKHLLDIMAILRDSYVWVPCNTVMSDADQARLTAKDLKIGEEFTTHDQIRMVPDILQSGDEFFFPVFSNIEAMGEYGNGFSKVQKHFLEALVLAKNNEKDLAGIVINAFSEPYILDKELWNLFDKM*	hhsuite_tools	hypothetical_protein	C88	25988	1021106	1047094	GCA_011058695.1|CP049223.1@region_1021107_1047094@tool_cenote_CDS_0037	cloud	direct	high	1088	0.999	GCA_011058695.1_01012