core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	91520	92089	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	1	570	GCA_011714665_1_33_95	GCA_011714665_1_33_95	-	121584	.	COG4116	Predicted triphosphatase or cyclase YjbK, contains CYTH domain [General function prediction only]. 	MKHLEIELKTLLKKDEYDRLKDQFTGVTPVLQKNYYIDTPDFELREKKVAMRIRTFEDWAELTLKVPQSVGNMEYNQKLQLKDAENYLSKKEFPQGIVLDELAKHGIQTSEWQVLGCLTTLRYEMQTAIGLMALDESQYFDMTDYELELEVENHEQGKQDFQQFLEENQSSYQKAPSKLVRFVKSMKNS*	mmseqs_cdd	nonviral_gene	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0001	persistent	direct	high	569	0.998	GCA_011714665.1_01412
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	92222	93367	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	703	1848	GCA_011714665_1_33_96	GCA_011714665_1_33_96	-	121584	.	PDB:1XO0_A	Recombinase	MIKKYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKAAERDLLLDVEENGFSNNEDFQNPTFAEVAELWLDSYKSTVKPTTYQNVKKKLDVMIDLYFTDMKIQQISVAYCQKVAIQLSNRYILYANYYSVISRIFKYAVSLDIIKLNPLDKIIKPKNRPLKGKENHYTKQELTEFLKVYKANCKPVDYTFFHLLAFSGLRTGEAIGLMWSDVDFENKLLSISRTAVVIGKKQTVQDPKTKRSKRVITLDDETLNVLKLWKRQQIKEYFQAGVPYKRESNYIFTNSFGGWISPSAVKERLRRFFCEHKDVKKITPHGFRHTHASLLFEAGITAKIISDRLGHNNVQTTLDMYTHINDNQRFEVVDQLMDFIRSS*	common_virus_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0002	persistent	direct	high	1145	0.999	GCA_011714665.1_01413
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	93893	94681	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	2374	3162	GCA_011714665_1_33_97	GCA_011714665_1_33_97	-	121584	.	PF08861.10	Domain of unknown function DUF1828	MNNSNTLKNIYFDWLLKEYKFNDLEKNIVEIRTPFLDNDFDHIILYAEFLSDGRVTLTDDGWTINNLKSHGVSFSNRSTYKNNLLNTIVNNLGTRAENGELFITTSLEKFPLAKQRLLQTIMQVNDMIVLRDTTIKNVFHDEIENTLVQREVLFTRRPSYSGKEGITVQFDFAIPTIKKERLVRTISNGNDLNRAKLLAMDTRILQNHKDNVEYIAVVDDIHHRFDKVAETQAVFNENSKDKIILLSHKDILENSLLLSNVI*	hhsuite_tools	nonviral_gene	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0003	shell	direct	high	788	0.999	GCA_011714665.1_01414
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	94674	95138	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	3155	3619	GCA_011714665_1_33_98	GCA_011714665_1_33_98	-	121584	.	.	hypothetical protein	MNYNDLNDQQVQELINKLKYPKNELSFNEIHTTISSLFGKIDIDEAIIDDDDIQYILHIYRGRMNPERYSIHIRFKNSHNHLVRVDINPSNRHVNPDDSIVEGNHIHIYSNHYDKKDRVAIPLEDSDFPNLTHIVDVFSEFIKYTHIKTEADDE*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0004	shell	direct	high	464	0.998	GCA_011714665.1_01415
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	95146	95913	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	3627	4394	GCA_011714665_1_33_99	GCA_011714665_1_33_99	-	121584	.	PDB:2FJR_A	Repressor-protein-CI	MNILGNSIKEIRKSKKMTQNELSQLTGFKQNTISNHENGKRQLDETDIRIYAAALEVEPQQLFSLSKVTTPTASPDLLTQQINDKLVQLTPDNKKIVLRTSEELLKEQKNEEETKINEVSEVISLYQVEVVSETAAASGFNYGFGYDDTDRETIEVDEQPPRHDIATKVSGDSMQPDYQDGDILYLVDKGLTTYNGDLAVIAYGDRSYFKKIYTENGRLRLVSLNDKYEDIILDFPPAEDTHIKIYAVIGVYRGE*	common_virus_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0005	shell	direct	high	767	0.999	GCA_011714665.1_01416
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	96365	96598	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	4846	5079	GCA_011714665_1_33_100	GCA_011714665_1_33_100	+	121584	.	PFAM:PF13744.5	transcriptional-repressor	MLTNKEKIRSQFLLPKIRLREERRKRELTTLYMADLIGLKNRRQYELKEKGQFPFQDYEMAIIANKFGMSETDLFFS*	phrogs_hmm	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0006	shell	direct	high	233	0.996	GCA_011714665.1_01417
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	96752	96922	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	5233	5403	GCA_011714665_1_33_101	GCA_011714665_1_33_101	+	121584	.	PFAM:PF13744.5	transcriptional-repressor	MRELRTAQKLGLRELAKRTLIDYTTLSRIENDLKAVTLSQAVVIAKALGCRVEDML*	phrogs_hmm	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0007	persistent	direct	high	170	0.994	GCA_011714665.1_01418
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	96934	97131	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	5415	5612	GCA_011714665_1_33_102	GCA_011714665_1_33_102	+	121584	.	.	hypothetical protein	MNNAAQKVTRIDKDAWEIATELANEYGVSICHIISESVRYCAENAEFKEMDVVVKRLVVGSKVLE*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0008	persistent	direct	high	197	0.995	GCA_011714665.1_01419
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	97220	97372	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	5701	5853	GCA_011714665_1_33_103	GCA_011714665_1_33_103	+	121584	.	.	hypothetical protein	MANKGFKNSYIDRKKLSSSLKTLMTQQAIERAELAESQRKELEEFLKDLL*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0009	shell	direct	high	152	0.993	GCA_011714665.1_01420
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	97467	98180	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	5948	6661	GCA_011714665_1_33_104	GCA_011714665_1_33_104	+	121584	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNEIFNFHGQEVRTLTIDDEPWFVGKDVADILGYAKPLDAISRHVDEDDSVKYGLTDNLGRTQNTIIINESGLYSLILSSKLPQAKEFKRWVTSEVLPAIRKQGGFIREDLDEDAFIALFTGQKKLREQQTTMLEDIDYLKSEQPIHPSYAQSLLKKRKARVVACLGGIDSPAYADKIFAQSVFRQAEIDFKDHFNISRYDLLPKKHADAALAYWMTWEPSTNTKMKIMELNAFSQA*	common_virus_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0010	shell	direct	high	713	0.999	GCA_011714665.1_01421
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	98194	98349	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	6675	6830	GCA_011714665_1_33_105	GCA_011714665_1_33_105	+	121584	.	.	hypothetical protein	MRPRRYPYSGKRKKQSDRQIAKLKRDIDVNRTNISSLKFVIETLSNHQNYR*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0011	shell	direct	high	155	0.994	GCA_011714665.1_01422
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	98312	98536	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	6793	7017	GCA_011714665_1_33_106	GCA_011714665_1_33_106	-	121584	.	.	hypothetical protein	MSKLSHKPNHVVKKLTWENLDNILLSNFSESTTDKPSAVIQLSDFEMSKTEIIEEATAQGYQVIDNSDGYLKFL*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0012	shell	direct	high	224	0.996	GCA_011714665.1_01423
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	98653	98796	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	7134	7277	GCA_011714665_1_33_107	GCA_011714665_1_33_107	+	121584	.	.	hypothetical protein	MEDKIIELADYFISESTTYREAKIACEKLFRQVSHEIELRALESKTV*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0013	persistent	direct	high	143	0.993	GCA_011714665.1_01424
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	98901	99191	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	7382	7672	GCA_011714665_1_33_108	GCA_011714665_1_33_108	+	121584	.	.	hypothetical protein	MEGITLQLRLDGESAELFTNQLLAFAEKQVKEQLENDRMPINQQALMEKFGFTHSYIKKLERKGLRFRKQGKYIMYDINDVYEILELEKEVRKLRA*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0014	persistent	direct	high	290	0.997	GCA_011714665.1_01425
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	99204	99524	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	7685	8005	GCA_011714665_1_33_109	GCA_011714665_1_33_109	+	121584	.	.	hypothetical protein	MFEPPILDQLMGVGALLIGFAGAYRHIKLQEERKEKERREEQEFASMITQGYNQAYERGREDKWQEIRKNIRREFKGFTYDNEPPVGLRPEPLALPEPKQSAIRLL*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0015	shell	direct	high	320	0.997	GCA_011714665.1_01426
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	99540	99836	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	8021	8317	GCA_011714665_1_33_110	GCA_011714665_1_33_110	+	121584	.	.	hypothetical protein	MEELIESLDNLIMIVKELEGRESTSRHFITTWENDYKNLLLVKEYLTDYKKLAKDYRDVELKNKLLKIEKMELEGRYIYEDMRMKYRANRRKWGARYV*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0016	shell	direct	high	296	0.997	GCA_011714665.1_01427
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	99829	100638	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	8310	9119	GCA_011714665_1_33_111	GCA_011714665_1_33_111	+	121584	.	PFAM:PF09681.9	replisome-organiser	MSEIKWIKITTDIFDDEKICLIDALPDPDAILVIWFKILTLAGKHNSNGLLMMTDKVHYTDEMLATIFRRPLNTVRMAIGVFEQFGMIEIIDGIISLPNWEKHQNVDGMEKIKEQTRNRVAKYRKKQKNLALGNVTGNVTVTDGNALEEDKDKNKNRLDKDKNKKRITTTTSSGGQENILELFQSEFRRLLSGFEIEEINHLLNENDVDLVKEALKTAINSGKPNIKYIGGILRNWQMNNVTTVEQVRQSEKKNKDKKEEQEAKDEWGY*	rep_hall_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0017	persistent	direct	high	809	0.999	GCA_011714665.1_01428
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	100626	100784	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	9107	9265	GCA_011714665_1_33_112	GCA_011714665_1_33_112	+	121584	.	.	hypothetical protein	MGILELIEQFEIDYYPLSYEKKTLLADQPIHQVVACLSEMASWHECGGRLSW*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0018	persistent	direct	high	158	0.994	GCA_011714665.1_01429
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	100778	101548	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	9259	10029	GCA_011714665_1_33_113	GCA_011714665_1_33_113	+	121584	.	PDB:4M4W_K	Replicative-helicase	MVDNVFEEIALSYHRNTEQQDEFCEKHNIPLIKILRTESVVCRMCESERIHKENQARVNELADAENERERKYYLEKFSLYDEVLKNATLDNFETPTEKEAEKLAFAKRICREWSEGARNNIVLQGEAGTGKSHLAFAMVKALSEYTKEIAIFINVTDLLMKIKADFSQEEFLVNKIASAKFLVLDDLGMEKDSEWSFTILYNILNKRSNTIITTNLISADIQKRYGRPFMSRLMKGVDKDHLMVFNDLTNKRKHYF*	rep_hall_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0019	persistent	direct	high	770	0.999	GCA_011714665.1_01430
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	101563	101757	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	10044	10238	GCA_011714665_1_33_114	GCA_011714665_1_33_114	+	121584	.	.	hypothetical protein	MFILRHGTREDKPFLRSVVIGVTGLDISYSEEKKAMRFVSRGVAVQVGKALRGSFGNFYPVEVE*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0020	persistent	direct	high	194	0.995	GCA_011714665.1_01431
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	101757	102218	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	10238	10699	GCA_011714665_1_33_115	GCA_011714665_1_33_115	+	121584	.	TIGR02072	malonyl-acyl carrier protein O-methyltransferase BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, carries out an enzymatic step prior to the formation of pimeloyl-CoA, namely O-methylation of the malonyl group preferentially while on acyl carrier protein. The enzyme is recognizable as a methyltransferase by homology. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]	MKDIRILDACCGSRMFWFDKNEPHTTYMDRREEEFEIHKKKINVKPDIVADFRDMPFDDETFNLVVFDPPHLLWAGQKSFMRAQYGQLDLLTWRLDLQQGFEECFRVLKTGGTLIFKWSDAQVNVKEILELVPQQPLFGQQRGTTHWMAFMKF*	mmseqs_cdd	nonviral_gene	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0021	shell	direct	high	461	0.998	GCA_011714665.1_01432
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	102228	102443	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	10709	10924	GCA_011714665_1_33_116	GCA_011714665_1_33_116	+	121584	.	.	hypothetical protein	MLNLYFVYNGHCKFYLGMFDNVDDLIEQMEDHQWAFSAITQPRFQKHIGQRTTRFDYGAKDCYYLATFSGG*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0022	shell	direct	high	215	0.995	GCA_011714665.1_01433
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	102448	102552	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	10929	11033	GCA_011714665_1_33_117	GCA_011714665_1_33_117	+	121584	.	PFAM:PF00436.24	single-strand-DNA-binding-protein	MIELIKEFGMAILWLFLGYLIGERAARKDKKDDQ*	phrogs_hmm	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0023	shell	direct	high	104	0.99	GCA_011714665.1_01434
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	102542	102937	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	11023	11418	GCA_011714665_1_33_118	GCA_011714665_1_33_118	+	121584	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MINNVTLVGRLTKDPELKYTPSNVAVATFTLAVNRNFKGANGEREADFINCMMWRKQAELFAEWCKKGNLVGVTGRIQTRNYENQEGRRVYLTEVVADGFERLEKRDDTANRSNIEEQMPGYALEEDDFPF*	common_virus_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0024	persistent	direct	high	395	0.997	GCA_011714665.1_01435
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	102953	103120	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	11434	11601	GCA_011714665_1_33_119	GCA_011714665_1_33_119	+	121584	.	.	hypothetical protein	MVGVTYQEIHLFVEFLKKQYGQGRPDYIEALNDLDGMAEVSYREAIERFLDDELR*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0025	persistent	direct	high	167	0.994	GCA_011714665.1_01436
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	103107	103298	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	11588	11779	GCA_011714665_1_33_120	GCA_011714665_1_33_120	+	121584	.	.	hypothetical protein	MNYDKQVVIEGLKRTIEQNEEKIIEYSKPCDARKRRIRALERDLLKKKNKELRKKVEELEDEI*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0026	shell	direct	high	191	0.995	GCA_011714665.1_01437
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	103288	103620	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	11769	12101	GCA_011714665_1_33_121	GCA_011714665_1_33_121	+	121584	.	.	hypothetical protein	MKYKVTEYHSDFQEEQTGTCELCFGTAWVENGSITVEDENGTETEIYLTVWDWGDYDTIYIDNVVNFSAWLQEREVDPIVEETERWSWLHELVEKYNEELEDDGRFKAKS*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0027	shell	direct	high	332	0.997	GCA_011714665.1_01438
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	103592	103909	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	12073	12390	GCA_011714665_1_33_122	GCA_011714665_1_33_122	+	121584	.	.	hypothetical protein	MMEDLKQKVNEVYNWTVEDGKPQPPKQDLPQAVKDRADYFWEMAEDGMTFMGAMECIFADEKPTDYELGATKGWLPKSKEFDDWIGYSPSMAQVVIAVYLIYGGN*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0028	shell	direct	high	317	0.997	GCA_011714665.1_01439
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	103911	104411	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	12392	12892	GCA_011714665_1_33_123	GCA_011714665_1_33_123	+	121584	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNIKALIKKYEAVECVVGIVSGKTILKTVLRDLKQLDEPKPVKVPEFVAEWIEEARKACKDVAELFEFDFTNDEVRKWFMQERPFDLVARAWLDGYEVEKEKRYIVSLNNGQPLTKTQSGKVLYFNQNIITGNYKFTRKELEEAGFGWVFDCPGIEIEEVEYDTNA*	mmseqs_cdd	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0029	shell	direct	high	500	0.998	GCA_011714665.1_01440
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	104395	104682	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	12876	13163	GCA_011714665_1_33_124	GCA_011714665_1_33_124	+	121584	.	.	hypothetical protein	MIQTLEEGMKDQSKRIKIPMEIRPFDVGYRIVNQHGNPLALKNGASIFDLPSLAEKAIKKKFSKDDPDFDIEKHFVEEVAIVNLSKFHSYFEEVE*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0030	shell	direct	high	287	0.997	GCA_011714665.1_01441
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	104682	104786	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	13163	13267	GCA_011714665_1_33_125	GCA_011714665_1_33_125	+	121584	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MEIEKVKQWFIDRENKDRKGRWIDGSFVKEEDLA*	phrogs_hmm	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0031	cloud	direct	high	104	0.99	GCA_011714665.1_01442
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	104783	105190	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	13264	13671	GCA_011714665_1_33_126	GCA_011714665_1_33_126	+	121584	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MIPKFRGLSIDEKSKGEWQYGHLIEDRGRAFIISEVVEANEQYITIGSWCPVNPATLGQSTGLRDKNGKEVFIGDIVKCTRGCLHEVYLEKEYGGTFIGGMPSIYLKGLLSGYAWTEDEEIIGNVYENPELLEDK*	mmseqs_cdd	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0032	cloud	direct	high	407	0.998	GCA_011714665.1_01443
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	105190	105426	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	13671	13907	GCA_011714665_1_33_127	GCA_011714665_1_33_127	+	121584	.	PFAM:PF11753.7	nucelotide-kinase	MNPEIIDNINKPSHYQGANGLEAIDVVHNFVGNLFGASAFFWGNAIKYMLRFQKKNGLEDLKKARKNLDWLIEEMEHE*	common_virus_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0033	shell	direct	high	236	0.996	GCA_011714665.1_01444
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	105419	105598	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	13900	14079	GCA_011714665_1_33_128	GCA_011714665_1_33_128	+	121584	.	PFAM:PF04936.11	host-nuclease-inhibitor	MNEYALYQGETFVTIGTLAEISKETGIAERMLKYYTFASTQRRNPNGRAVVKIEVDDEG*	phrogs_hmm	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0034	shell	direct	high	179	0.994	GCA_011714665.1_01445
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	105588	105818	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	14069	14299	GCA_011714665_1_33_129	GCA_011714665_1_33_129	+	121584	.	PDB:2FJR_A	Repressor-protein-CI	MKDKLNPRQASRFAFLLKQKRKERKLSQEKLAAKLGYSRYLIAQWEKGGSVPNIYNVEDICTYFAFPADIILGSRA*	common_virus_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0035	shell	direct	high	230	0.996	GCA_011714665.1_01446
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	105890	106318	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	14371	14799	GCA_011714665_1_33_130	GCA_011714665_1_33_130	+	121584	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQIELLDIIDEKKTRKEAIKVLKKYSRLRRIAGEEYAPKITISYSLEPRSSSGQTSKQVESMVLRRVSAQQDLELIAKAINNLSDMEYTRILIERYCRKKRREDYSIYSELGYSSSEYYRILNKALLEFAESYQASNLLVYK*	mmseqs_cdd	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0036	persistent	direct	high	428	0.998	GCA_011714665.1_01447
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	106608	107174	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	15089	15655	GCA_011714665_1_33_131	GCA_011714665_1_33_131	+	121584	.	CDD:cd01192	site-specific-tyrosine-recombinase	MKKVEPIRDLDDIERIKDYLKNKSDRNYVLFMFGIYSGLRVSDIVPLQVKQVIADRIELKEKKTGKIRYFPISPPLRKEINRYIKDNQLAEYDYLFPSKKKKRTDGVRITHIGRVAVYQILQDAAKYVGLNHIGTHSMRKTFGYHHYKKNSNVAILQKIFNHSTPDITLGYIGYSQDELDQSILSFDY*	common_virus_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0037	shell	direct	high	566	0.998	GCA_011714665.1_01448
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	107409	107753	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	15890	16234	GCA_011714665_1_33_132	GCA_011714665_1_33_132	+	121584	.	pfam01844	HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	MNTNPLRADRSGPHRVAFEKNKKIILKTRNTCGICGQPVDKDLRYPHPLSPVIDHIVPVNKNGHPSDIANLQLAHWQCNRQKSDKLYADEKTNGTKVIGNRNLPQSTDWFKYKG*	mmseqs_cdd	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0038	shell	direct	high	344	0.997	GCA_011714665.1_01449
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	107890	109194	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	16371	17675	GCA_011714665_1_33_133	GCA_011714665_1_33_133	+	121584	.	PDB:2JES_G	Portal-Protein	MTLKGMGYLRKKLANYKMGVDTRYNQYAMQHNEIDVGITIPPQIRQQYRAVLGWAAKGVDSLADRLVFREFANDEFGANEIFAQNNPDVFFDSAILSALIGSCCFVYISQGDDDDAPRLQVIEASNATGVLDPITGLLTEGYAVLKRDDNGYAVLEAYFTSDVTWFYPKDGKPFAIGNPTGVPLLVPVIHRPDAVRPFGRSRITRAGMYYQRYAKRTLERSDVTAEFYSFPQKYVLGLSQDAEAIDTWKATVSSLLTFTKDDEGDKPNVGQFTTSSMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGSGLLNVAYVATCLRDEFPYLRKQFNKTVVKWEPLFEADANMLTLIGDGVIKLNQAVPGYMDAETIRDLTGIKGSDKPAPVVKEGADGGGYRSEPAQENQV*	hallmark_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0039	shell	direct	high	1304	0.999	GCA_011714665.1_01450
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	109148	110362	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	17629	18843	GCA_011714665_1_33_134	GCA_011714665_1_33_134	+	121584	.	pfam15542	Bacterial toxin 50. A predicted RNase toxin found in bacterial polymorphic toxin systems that is proposed to adopt the BECR (Barnase-EndoU-ColicinE5/D-RelE) fold, and contains two conserved histidine, a serine, two lysine, and a threonine residue and a HxVP motif. In bacterial polymorphic toxin systems, the toxin is usually exported by the type 2, type 6, type 7, and MuF-type secretion systems.	MVEDIVPSLLKKIKSEFEGARLDSEVLKDLLSKLHHSKASYLDANQYAIEIGEILSKALGASLTNETLPDGKMYYNIAQRVLTDVLGRNHELVSDYTEQIQKNLNSEAKIGLTAQVPELNQDRIDGLVNRLASEESFDDVKWLLDDPIVNFSQSIVDDSIRKNAEFHHKVGLHPTIERNSTGHCCDWCQSLVGKYLYGTEPSGFYRRHQRCRCTIDYHPKNGKQQNAWSKKIIKEASNEKERRKQQLIDIKDNFAADDKREYRSIVKVLGRKNAPKSVAKFRELKYNDVKEYEQLKDKVFIYQKIQTGEWGKKINPEKQLPHMESTHKAGKSYIYDSVDVQELFNKHHGTGRIELDRHGRRTNKEIIELGYPIGINGSDGSEVTSIKIHHSEKRTHIVPKKGDQ*	mmseqs_cdd	nonviral_gene	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0040	cloud	direct	high	1214	0.999	GCA_011714665.1_01451
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	110362	110577	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	18843	19058	GCA_011714665_1_33_135	GCA_011714665_1_33_135	+	121584	.	4A54_A	EDC3, MRNA DECAPPING COMPLEX SUBUNIT	MNLEQYLGKDIRVTFVDDQILEGHCNTFTGKQDTEDELYDEITIRTDKHPYVGFNESEIKSIELRKNNVKI*	hhsuite_tools	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0041	cloud	direct	high	215	0.995	GCA_011714665.1_01452
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	110564	110791	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	19045	19272	GCA_011714665_1_33_136	GCA_011714665_1_33_136	+	121584	.	.	hypothetical protein	MLKFNLIEVVNGFYRYEVFPEGDVSRREIFEFNPSTREVKRNDPPRYGFDYVSKCIINLKNADGSLKESGQVAWY*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0042	shell	direct	high	227	0.996	GCA_011714665.1_01453
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	110885	111049	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	19366	19530	GCA_011714665_1_33_137	GCA_011714665_1_33_137	+	121584	.	.	hypothetical protein	MIEIDERTGEVTVVIESNYDKELGYPYYANKARGAVKQMLDRGELPNEKSFAWG*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0043	shell	direct	high	164	0.994	GCA_011714665.1_01454
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	111099	111329	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	19580	19810	GCA_011714665_1_33_138	GCA_011714665_1_33_138	+	121584	.	.	hypothetical protein	MGNTIDFSEKKSSLERGASVKEILEENLEASHDYTSVLVVSLDKDGEINLGYSWDSSLQALGMLDVAKNYILNVIN*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0044	shell	direct	high	230	0.996	GCA_011714665.1_01455
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	111380	112792	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	19861	21273	GCA_011714665_1_33_139	GCA_011714665_1_33_139	+	121584	.	PFAM:PF03354.14	Large-Terminase	MARKKLGNQNPTQSVILKYVKKNSKAKEAVEIYERTGLSCYAWQVNLLTSIMAVDKNGLWVHQKFGYSIPRRNGKSELLYLFELWGLHNGLNILHTAHRISTSHSSFEKVKRYLEKMGYVDGEHFSSIRAKGQERIELFDGGGIVQFRTRTSNGGLGEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPVSNGTVFTNYRKTCLFGRGKYSGWAEWSVSEEKEIDDVEAWYNSNPSMGCHLNERKIEAELGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCVDSMPDLSGKLFVGVKYGQDGANVALSIAVRTVDERIFVETIDCQSVRNGNDWILDFVKRADVATIVVDGASGQKILDEELKKERMKSVILPTVKEIIVANSMWEQGIYQKTLCHAGQPSLKKITTNCEKRNIGSNGGFGYRSHFEDMDISLMDSALLAHWACVTTKPKKKQKISY*	hallmark_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0045	shell	direct	high	1412	0.999	GCA_011714665.1_01456
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	112868	113338	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	21349	21819	GCA_011714665_1_33_140	GCA_011714665_1_33_140	+	121584	.	PDB:6B0X_d	Major-Capsid-protein	MKMSEFKTIETQEELDNIVKERIRREREKFGDYDDLKKRVSELESENGALKATVEETKQTIAESDAQITELQGQVSNYETASLRTRIALQNGLPYDLADRLQGADEEALKADAERLAGFMRPATPQAPLRDTEPPIGDDKTVQMKQMLRELQPKGE*	hallmark_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0046	shell	direct	moderate	464	0.985	GCA_011714665.1_01457
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	113344	114240	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	21825	22721	GCA_011714665_1_33_141	GCA_011714665_1_33_141	+	121584	.	PDB:3JB5_B	Major-Capsid-protein	MADNAMKAGTLFKPEVVKQLISKVQGKSVLAKLSAQTPIPFNGVEQFIFNLEGNAQIVGEGEQKLGNKAKLTSKVIKPLKFVYQARITDEFKYASEEKQMNFLSAYMDGFAKKIAEAFDLAALHGLEPKSMTDATFRATNSFDGVISGSVVTYDETKIDENIEDAVQQVIARGCEVTGIALSPIAGQALAKVKVKDVVQYPEFRFGQNPDSFYGMKSDINKNLTVTGGSAETDHAIVGDFQNRFKWGYAENIPMEIIEYGDPDGAGRDLKAYNEICLRAEAFIGWGILDEDAFARVKA*	hallmark_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0047	shell	direct	high	896	0.999	GCA_011714665.1_01458
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	114246	114458	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	22727	22939	GCA_011714665_1_33_142	GCA_011714665_1_33_142	+	121584	.	cd12935	LEM-like domain of lamina-associated polypeptide 2 (LAP2) and similar proteins. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and postmitotic reassembly. Some of the LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are nonmembrane nuclear polypeptides. All LAP2 isoforms contain an N-terminal lamina-associated polypeptide-Emerin-MAN1 (LEM)-domain that is connected to a highly divergent LEM-like domain by an unstructured linker. Both LEM and LEM-like domains share the same structural fold, mainly composed of two large parallel alpha helices. However, their biochemical nature of the solvent-accessible residues is completely different, which indicates the two domains may target different protein surfaces. The LEM domain is responsible for the interaction with the nonspecific DNA binding protein barrier-to-autointegration factor (BAF), and the LEM-like domain is involved in chromosome binding. The family also includes the yeast helix-extension-helix domain-containing proteins, Heh1p (formerly called Src1p) and Heh2p, and their uncharacterized homologs found mainly in fungi and several in bacteria. Heh1p and Heh2p are inner nuclear membrane proteins that might interact with nuclear pore complexes (NPCs). Heh1p is involved in mitosis. It functions at the interface between subtelomeric gene expression and transcription export (TREX)-dependent messenger RNA export through NPCs. The function of Heh2p remains ill-defined. Both Heh1p and Heh2p contain a LEM-like domain (also termed HeH domain), but lack a LEM domain.	MALYRDTKTGVIISAESVLGGDWVPVEKQVIEEEHLTVVELKSSLDELGIHYEKNAKKSELLSLYKSHKG*	mmseqs_cdd	nonviral_gene	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0048	shell	direct	high	212	0.995	GCA_011714665.1_01459
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	114462	114902	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	22943	23383	GCA_011714665_1_33_143	GCA_011714665_1_33_143	+	121584	.	PFAM:PF09355.9	head-to-tail-adaptor	MGNFAKIEDLELLWRSLKFDERARAEALLEVVSNSLRVEAEKVGKDLDDMVAESVSFASVAKSVTVDIVARTLMTSTDHEPMTQVAESALGYSFSGSYLVPGGGLFIKDTELKRLGLKKKQRYGAIEIYDLPKRNPCHFSGQGRNW*	hallmark_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0049	shell	direct	high	440	0.998	GCA_011714665.1_01460
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	114847	115185	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	23328	23666	GCA_011714665_1_33_144	GCA_011714665_1_33_144	+	121584	.	PFAM:PF10665.8	Minor-capsid-protein	MTYLKGIPVILVDKVEIGNDDFGHPIHRDVEIEVQNVLVAPTSSEDVINQMNLTGKKAEYTLGIPKGDTNKWENREVKFFGRKWRTIGIPQEGIESMIPLSWNRKVMVEVYE*	hallmark_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0050	shell	direct	high	338	0.997	GCA_011714665.1_01461
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	115178	115414	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	23659	23895	GCA_011714665_1_33_145	GCA_011714665_1_33_145	+	121584	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MSDMKFQLNSAGVSALLRSSEMQGILREKGQGIAERAGEGFELTVSPGQKRANAKISTTDIKSMARNKKHNILLKAMR*	hallmark_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0051	shell	direct	high	236	0.996	GCA_011714665.1_01462
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	115411	115746	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	23892	24227	GCA_011714665_1_33_146	GCA_011714665_1_33_146	+	121584	.	PDB:2LFP_A	tail-completion-protein	MIELVIKKFLDGQLDVPSFFEHKPNMPESYVILEKTGSGGSDYVHSATFAFQSYAPSLQKAAELNEKIKKVVEDLITVNEVSGVHHNSDYNFTDTETKQYRYQAVYDINYF*	hallmark_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0052	shell	direct	high	335	0.997	GCA_011714665.1_01463
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	115813	116370	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	24294	24851	GCA_011714665_1_33_147	GCA_011714665_1_33_147	+	121584	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MTTASASNVTAAKPKIGGAVSTAPAGTDLPTNAKTTLNPAFKTLGYISEDGLTNENSPESEEVKAWGGQTVLSSQTKKKDTFKYKLIEGLNIEVLKEVYGPDNVSGTLETGITVTANGKELPEHRLVIDTLLKNGCVKRVVIPRGKVSQIGEINYKDGEPIGYDLTITALPDNSENTHYEYIQGA*	hallmark_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0053	shell	direct	high	557	0.998	GCA_011714665.1_01464
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	116376	116651	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	24857	25132	GCA_011714665_1_33_148	GCA_011714665_1_33_148	+	121584	.	.	hypothetical protein	MSKTFKGETKLGFKFEISERRLNNYELLELIGEVDEGQGQVFPKVVKLLFGDEQAKAFKDHLREEDGIVPNEKMADEIKSVFESFNGLKKS*	.	hypothetical_protein	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0054	shell	direct	high	275	0.996	GCA_011714665.1_01465
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	116663	117049	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	25144	25530	GCA_011714665_1_33_149	GCA_011714665_1_33_149	+	121584	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MMNLDEDALICDLAETYQIYDYKQLPLNEVAVFAYGLRDDSRIKQIMSDQIVSLEITLLANIVDRLSISLWLQTKDGQKGVNRPASIAELLTKNHKEESDERDYLVFESGEDFENYRKALLAKTGGDE*	mmseqs_cdd	nonviral_gene	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0055	shell	direct	high	386	0.997	GCA_011714665.1_01466
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	117049	119460	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	25530	27941	GCA_011714665_1_33_150	GCA_011714665_1_33_150	+	121584	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATELGKAYVQIIPSAKGISGMIQKEMGGEVASAGVSAGESLGSKMMGAVSGVIAAAGIGKAIGASINEGAALQQSLGGVETLFKDSADKVKGFANEAYKTTGLSANAYMENVTGFSASLLQSLGGDTDKSAETANMAMIDMSDNANKMGTSMESIQLAYQGFAKQNYTMLDNLKLGYGGTKQEMQRLLSDAEKLTGVKYDMNNLSDVYSAIHAIQENLDITGTTAREAATTFTGSFESMKAAAQNVLGKLSLGEDIQPALQSLLETTSTFLFGNLIPMIGNILKQIPNLILGGIKGVFSGIFGEGLGSIMGGIVTALGSAFLAFKAFSAVTGLLSGIPAILTTIKTAVTGLFTAMSANPIGIAIAAIAALTAGLVYFFTQTEMGRQIWQGFMDWFSGVWQSVAPVLTEVWNGIVETATTVWNNMMAVVAPIIQAVVDFIRSVWDGISLWWTENQGLIQQTFTTVWNAIQTVIQTVMPIIQSIIETAMNILAPFIETTWNNICTVVTTVWELIKIAIQTAMDVIGGIIKAVMAIINGDWGTAWNAIKGVGEAIWKGLSAAGKAIFDGFAQILSNIWSTIKSVASSAWEGLKSTVLGLIDGLVQGAKKAWESMKQGVRDLVSNVTSIFDGIRNIDLWSAGKAILDGFLGGLKSAWGAVTDFVGGIASWIRDHKGPIEYDRKLLIPAGNAIMQGLNRGLQDRFKGVKKSVSGMAGEISSAFSNDNFGLSGTPTIAKNIEASLAMPSAQLEAKDSQTVSEIAILRASMEKILTAILEKPSDTYLDADKISMSVYQRQGAIYAREGM*	hallmark_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0056	shell	direct	high	2411	1.0	GCA_011714665.1_01467
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	119460	120158	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	27941	28639	GCA_011714665_1_33_151	GCA_011714665_1_33_151	+	121584	.	PDB:2X8K_A	Distal-Tail-Protein	MFYMIINGFNTSTIPHCVVTDFGQVEAAKPRVVEDANLYGANGSYRVLDGGYESYERTFSFYIPKLLDVSTIVEKFQPKDNVLEFSYQLGSVFYADFIGATYSPHGMHAWKLELKLSMQPFRYQKSVEPLIFTASGNINNPGSVYSEPVIEIEGDGDISLTIGRTTMHLTVRRKVTIDCRHKKQNIYNADGAVQNTLRKRGGFFELAVGNNGLVFTGAVRKVTVRPNWRYIL*	hallmark_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0057	persistent	direct	high	698	0.999	GCA_011714665.1_01468
GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote	cenote	CDS	120155	121582	GCA_011714665.1	RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665.1_RXXI01000003.1	GCA_011714665.1|RXXI01000003.1	GCA_011714665_1_33	GCA_011714665_1_33@C11	28636	30063	GCA_011714665_1_33_152	GCA_011714665_1_33_152	+	121584	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTEGNRPLNEAYNDEIVHFGNNTYQLTFRFPTSDPKWELLKEETFLTADDLHGEQDFYIFEVEKQQGYIQVYANQVISLLNNYIVSSIEVDRVSGTRVLSAFAGSITRANPFSFFSDIDDRHTLNIKDKNAMEVLAKDKHSILGQWGGDMVRNGYNLRLLKNGGSENESLFMYKKNLSSYQHKTSTKSLKTRITFKTTVKGEGENAVDHDYMVVIDSPLLGNYSQIYEDVVEVNDQDVTDEASLIAYGKQYFRTSMCDMLEDNLEISVVGQSDVAVQMFDVVSIYHEWYGLDVRKKITKYTYSPMAKRLKSIGFGTFQSSLANAIGGIVNDAVLNESRNLHQIFEERLKKEIANADRAFDAEFTKREKAITDAIELAKAKAEEVKQEVSDTINQRFNSFHDEPLRESRRKAEEALRQAGASSSLAQEAKRIGLDSVARLEAFKSQTRSAQTALSGDLNLLKQTVTNDISSKQR	hallmark_hmm	common_virus	C11	30065.0	91520	121585	GCA_011714665.1|RXXI01000003.1@region_91521_121585@tool_cenote_CDS_0058	persistent	ambiguous	low	5	0.004	GCA_011714665.1_01468
GCA_011714665.1|RXXI01000062.1@region_1_2214@tool_cenote	cenote	CDS	2	2212	GCA_011714665.1	RXXI01000062.1	GCA_011714665.1|RXXI01000062.1	GCA_011714665.1_RXXI01000062.1	GCA_011714665.1|RXXI01000062.1	GCA_011714665_1_58	GCA_011714665_1_58	3	2213	GCA_011714665_1_58_1	GCA_011714665_1_58_1	-	2214	.	PDB:3GUD_A	Neck-appendage-protein	AQTALSGDLNLLKQTVTNDISSKQRQLKTDISKQVQALGQIKNDLAGVRSSQARYEETTKGRLTALTNRMEGKANKSEVRQTAETLTSQIDRIQEESSTRISTMTSRFNQRADALDAGVRRLTEGLRTKADISSLNVTAENIRQSVKSLETDTQNKLNQKLSQAEFEVQAGSIRQEILNATKDKADKTLVVTEAGKLREEFSNMQVGGRNYYRDSEKIQQSRFGFVFDNLDPYLSKSDIGTTWTLSFDCKLDEVDGSFPFHMSHGGANGFGIEGKKEFTATREWQRFRLTGPVFFKEDAPSESKLQMTLFNSDLGYGGTIFIRRIKLEKGTLATDWSPALEDTNGLITQAKASFERTAQELRTDLSAVQAYVAQDGQRQESLQRYTREESARQARAVREQISRDYVGKSSYQEDVEGIHRRIEGVKTSANREITSQIASYRQSADGTFRDISSRITTYKQDMTRDIANLSHQLAGKVETTDFQRVRESSQLYERILGNTENGIADKVARMAMTNQLFQVEVGKYSVSGPNLIKNSDFKNDTNKWVSTQNLGRLVKHSFYHNGQKDLMRLSNATKNKNFLSSHRFNLERNTDYVLNFRGFNNSALASYDVYILGRRAGESDGFTIFKKVVSSKKLSTSRCEDVSVTFNSGEMDNAYIRFENNGSSSGTADLYITEVDLYKGYKPRTWQPHPEDAVADANKKLEATQTKMTQLAGSWLVQNINSAGDLISGINLGANGH	hallmark_hmm	common_virus	NaN	.	0	2214	GCA_011714665.1|RXXI01000062.1@region_1_2214@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	2	1234	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	3	1235	GCA_011714665_1_8_1	GCA_011714665_1_8_1	-	42571	.	PFAM:PF07902.10	minor-structural-protein	MDALTRRQFDRAMFAKERTLAIRVGDYTSRDIKEASFEYGYIKGDTYKPGGTCAGSGKITFTSIITTFNKLDTLHPEIGLLVGDTYQWVKMGEYFINDIEIDRNRNTTTLELMDGMFKLNREYVTDLHFPAEVREVIQEICLKTGIELANDYFGISAMRYHVEQVPEGKKLSFRDMLSAMTQMIGMSCFFNREGKMEIRDLTESNITINADSYFLHGLTKSEIEYQIAGITCKTDKKPLTVGMKTGRSLELDNVFMTQSALNDLYYKLKNLTYYPYNLNYQGHLLLEVGQWVTIQTNKKETFKVPVLSQSFTFKGGLRGRISADSKAGNDTQYSYEGTITKQIKQQDGIEAKIQAQIEAADAAFDAEFTKREKAITDAIELAKAKAEEVKQEVSDTINQRFNSFHDEPLRE	common_virus_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	1239	1589	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	1240	1590	GCA_011714665_1_8_2	GCA_011714665_1_8_2	-	42571	.	.	hypothetical protein	MAQLRINGVAVKPPKYFQVGIQDIDGETGRNANGDMVRDRITTKRKLDCEWGMMTQGELSQLLHAVSSEFFEVSYPDPMDGQVTKTFYVGDRTAPSYTFTEKFKPWSGAKFNLVER*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0002	shell	direct	high	350	0.997	GCA_011714665.1_00367
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	1598	5188	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	1599	5189	GCA_011714665_1_8_3	GCA_011714665_1_8_3	-	42571	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MATLDELKVMIDAEIAPFRKKMKEVENQVKGTSDQVKNATAKIREQSSSIGSAFGKLAKFAGFAILGKKLLDVGMYSTQTALEVSAAMNQIKRQMGESSQSFLKWVNDNANAMNMGVGEATNYGAVYSNLFSGFIKDTNKLSAYTAKMLQTSAVVAEGSGRTITDVMERIRSGLLGNTEAIEDLGINVNVAMIESTEAFKRFANGQSWQQLDYQTQQQIRLMAILEQATAKYGNTLSNSVNGRISLFKSLMKDAALNLGNSMLPIINAIMPVLNSFAMVLKNVTAKLAEFIALMFNKKATVKDGVGGAVGDMGNAMKDAAGGAGDLADAVDDAGDSAGGLADNLGDSAKNAKKAAKELLGLLGFDEINILQKPKDDDAGGSGGGKGGKGKGGGGGPFKDILPEVELTDMDNQFKSIFDGLGDKLKGLFDLFKKGFDAAFRPEGIERIKTALDQIAKTMGEIATDPRVVNAFNRMAEKIAYALGQVIGSIATIGLGIGVFLAESIANGLGRQKERITRTLVALFDNIGNIAEAVGNIAQAFSSAFYDVITSTGAVRIGSAIVSTLLSLTSTIVEVGSKLAGSLFKGFEKVVVTSAPKISSVFQSLLDTVAPVFESIERSVNKFGDGLSRVYDEHVVPAINSIANAFNGLIDIIQILWENSWQPFAEFLSGVFGVSIEGISDLLGGGLLATLGLLADAIKLVADGFAVFSDWCKENKEPILALITAWQTINFLSWAEQAGGLAGAFELLSGKVSFIVSGIKNLGLALKALTFDKLVSFGETIYLNALYAKDFVVNSGKTIAQLGKTALELGKSALAWTAHTAKMGLATAAEFAHSVAAGVATAATWAFNAALAVLTSPITLVIAAIAALIAIGVLLYQNWDTVVEFAKTAWQGLCDFISGICQAIGEFFSGLWTKLQEIFEPIGQWFGEKFQQGWDAISNTFSKLGSWFGDRWNESKDALAEANTWLGDKFKSGRGKVNSAFEKVGSWFGDRWKDIKDGVKEADTWFGEKFESAKKKTQNPFQKIGSWFGDRWKNMQDALKEIPNWFKNLFNDAMDNAKNIVKSGIDKLKSFFNFDWSLPKIKLPHFNISGSFSLMPPRIPSFSVDWYARGGVFNSPSIIGVGEAGQEAVMPLERNTGWISILAQKLAERMPANNVPTGYSLPAGDIVIQIAGHEFGRVAIQEINKEHERAGQTLLKI*	hallmark_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0003	shell	direct	high	3590	1.0	GCA_011714665.1_00368
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	5175	5525	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	5176	5526	GCA_011714665_1_8_4	GCA_011714665_1_8_4	-	42571	.	.	hypothetical protein	MFLDIGGKPLDFWDLTVLEIREMIESYNRVKIQERKEKIIDSYRLSQMISNHVSLLLSKDAKVFEFWEYAPELFVEEKQAVEQERQRQALLLHKERMRDFADRHNRKRKEEMNGNS*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0004	shell	direct	high	350	0.997	GCA_011714665.1_00369
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	5564	5944	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	5565	5945	GCA_011714665_1_8_5	GCA_011714665_1_8_5	-	42571	.	PFAM:PF12363.7	tail-assembly-chaperone-protein	MALPYSIWKISDEKELKLRLSSHQAAKVEEKIGMNLLKIFMPEAGEEFPLPPLKVVLLLIHGALQKYENGYSLEDVYDLYDEYVDNGGDQTTFMTEVLMPLFEVSGFTPRGSKGKKTSKKKMTVVE*	hallmark_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0005	shell	direct	high	380	0.997	GCA_011714665.1_00370
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	5949	6362	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	5950	6363	GCA_011714665_1_8_6	GCA_011714665_1_8_6	-	42571	.	PFAM:PF16463.4	tail-tube-protein	MLANGITLSYSETKGSYTKLVGLKEVPEFGIEPEKVENTTLEDKVKKYEFGIGDAGELEYKFSYNNSSETAPYRVLRKAADDKKKLYFEQAYPDGTKVNFEGQVSVKLGGGGVNAVIEFTLKIALQSELEFTDGLGG*	hallmark_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0006	shell	direct	high	413	0.998	GCA_011714665.1_00371
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	6365	6733	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	6366	6734	GCA_011714665_1_8_7	GCA_011714665_1_8_7	-	42571	.	PFAM:PF05657.10	tail-component	MINIKPVIYKELQKVADNVTDTYPSDWETFPVVIFLEEQNKPGDWFDDQEQKSSIRYKVDIFDDTSTSELAVKINQIFESLGLRRTDCQDVPDPSHLRHKVMRFEGVVDLHSELVFQFRMEN*	hallmark_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0007	shell	direct	high	368	0.997	GCA_011714665.1_00372
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	6730	7245	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	6731	7246	GCA_011714665_1_8_8	GCA_011714665_1_8_8	-	42571	.	PFAM:PF04883.11	putative-tail-component	MSELRGADRLIAKCRRLASKKTGEDIVLRAVHNAAIKVVQADAKRLAPGNNGELRNSIKTRVKMDGDKAIGEVYTNLHYAPYVEFGTGPKGQASHSGISPEVSVSYRSSPWYVHEDQINVGPYHFQKIGEFYKMYGQPAQPYLYPALRDNQERVSKNISDYVRRKIREQIK*	hallmark_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0008	shell	direct	high	515	0.998	GCA_011714665.1_00373
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	7220	7558	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	7221	7559	GCA_011714665_1_8_9	GCA_011714665_1_8_9	-	42571	.	PDB:2KX4_A	head-closure-knob	MFLKQSRLKPYPMRRFEKTVTEEGVAKEGYAKEAETVRLELWPAGSKLQSELYGERVNDILNANANKSATIKVKDGVCIDSPTEVTHRVISKKVYTYHQVLELERVRATRGR*	hallmark_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0009	shell	direct	high	338	0.997	GCA_011714665.1_00374
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	7539	7850	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	7540	7851	GCA_011714665_1_8_10	GCA_011714665_1_8_10	-	42571	.	PFAM:PF05135.12	head-tail-adaptor	MSIELLKKLTGEEDTQLLMLLQTRATNLILSETNRTSLTPALSLLIPEVAIELHNRSGAEGEHSRTEGGIAVVYGENGLSTGLLQRIRMHRLARVAGHVFEAE*	phrogs_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0010	shell	direct	high	311	0.997	GCA_011714665.1_00375
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	7852	8040	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	7853	8041	GCA_011714665_1_8_11	GCA_011714665_1_8_11	-	42571	.	.	hypothetical protein	MKFKIKQDFYDWELNVKRLAGEELEITEERYAELADNFASNGVAISDVLEEILPEPEFLEED*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0011	shell	direct	high	188	0.995	GCA_011714665.1_00376
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	8030	8212	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	8031	8213	GCA_011714665_1_8_12	GCA_011714665_1_8_12	-	42571	.	PFAM:PF09124.9	endonuclease-VII	MSLLLRRHYIQEEQAGQYSDLENKTLEELKNLAKEAGITGAYKLSKAEIVEVLEDLKSEI*	phrogs_hmm	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0012	shell	direct	high	182	0.995	GCA_011714665.1_00377
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	8224	9066	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	8225	9067	GCA_011714665_1_8_13	GCA_011714665_1_8_13	-	42571	.	PDB:4AN5_F	Major-Capsid-protein	MTAGQTKLATMVNPEVMADMVSAKLPKLIKFTPLAYVETALQGQPGNTLTVPAWEYAGDATEVGEGQAISPDKLTTKKTTMTIKKAAKGYEITDEALLSGLGDPLGQATYQLGLAIANKIDDDLVAVAKTATQHVAETPTTLEAIDKALDIFEDEEDAQYVAIINPKDATKLKTDVAKEWTKGSELGANMVVSGTFGEVAGVQIVRSKKVEEGKGFLVKVSPSQTQTDDANKYGAFVIMLKRDVAIETDRDILKKTTVITGDKHYGVYLYDPTRVVKFGE*	hallmark_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0013	shell	direct	high	842	0.999	GCA_011714665.1_00378
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	9072	9641	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	9073	9642	GCA_011714665_1_8_14	GCA_011714665_1_8_14	-	42571	.	PDB:6B0X_d	capsid-scaffolding-protein	MNEETQTVETVEEQKVPAEPAQQPQDEKKYTDADVDAIIDKKFAKWKSEQEARENEAKKLAKMNADEKQKYQLDQREQELADREKAIARKELTAEAKAMLSERDLPVELVNVVDLTSAETVSQSVAVLQKSWEQAVQKGVQEKLKGGAPMKQAPVDSDGITKEEFARMGYQSRNELYQKNPELYKKLKG*	hallmark_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0014	shell	direct	high	569	0.998	GCA_011714665.1_00379
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	9931	11427	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	9932	11428	GCA_011714665_1_8_15	GCA_011714665_1_8_15	-	42571	.	PFAM:PF06152.10	minor-capsid-protein	MDKAEKQADQFDKVYQEAKTYLDKEVNKIFDKFQRDYGLSQVDARQVLKNMKDKKNLNELRKVLEARPNAPNIQRLLADLDSPAYSFRMKRLERLSDDLDRMRESIYHSEKTGSDAFYSDLMKDSYYKATFDLQQQTGLAYGFSGLPESEIKHLQSFSWVGDGSTYSTNIWKNTGKLTSSIKDELLMSLMTGRGTRETAQAIAERFNVGQNDARRLVRTESAFFHNQMELLSYEEADIEKYIFVAVLDKRTSRICQEHDNQVYDRDKAVPGVNCPPMHPWCRSTTVGYDEDADYSKLKRRARNPETGKTELVPADMTYKEWYSKYVAKDVKNEIQDYKKSDQTVSRYNTQKLFSDVSNAWDEIGKGGLSKEQLVGLLKSEYELGNFSSDITKLIGVSSAYIDVSSLATSLVRHGQQYSLDEFMLIKEAVQKPYLILDNSERVEKSIISYVKIPNKDKVIMEAVMVPRDEMLVIHFNKVGIRQVKKNGKNMLTLYKKEK*	hallmark_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0015	shell	direct	high	1496	0.999	GCA_011714665.1_00381
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	11390	12859	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	11391	12860	GCA_011714665_1_8_16	GCA_011714665_1_8_16	-	42571	.	PDB:5A20_A	Portal-Protein	MYQYLTYPRDGYDEGSLKKDLIYKLITIYNTESSHLKKLKSYYLGEHAILEHTRRNVNAPNYKTVANHAKDIADTATGYFMGNPIKYNNTADGDIDELLTAFDGAEIDQVDAQNALNMAIYGRAYEYIYAKEGLTELDSTSIDPENTFMVYDDSIERKPLFAVYYYEVKDDTKDTTKHQAEVFTENLHYHMVLRSTDSGTTQSEEATPHNLGQIPIIEYRNNHFAIGDYEQQISLIDAYNSLMGNRVNDKEQAVESILVLYGTQLADTPEDAKVAMKILSEEGLLELPGDSARAEFLKNTLDESATEILRTALKEDIYTFSHVPNLTDENFAGNTSGVAMEFKLMGLEMITKTKEANYKRGLRQRIAIFAHYLGMKQIALESHSIVPQFSRGLPKNLLEISQIVNNLEGKVTNRQLISLLPFVEDPDAELEALEEEKKKNMEDMPMFNKDNTKPEDEVEDEESGVLGEEESQSDLPADGQGRKAGRPVR*	hallmark_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0016	shell	direct	high	1469	0.999	GCA_011714665.1_00382
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	12871	14088	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	12872	14089	GCA_011714665_1_8_17	GCA_011714665_1_8_17	-	42571	.	PDB:5OEA_B	Large-Terminase	MTTNKFTKRQEEVLTRVLNDDFFICGLHGAKRSGKTVLNNMVFMNEIARVRETADRLNIDEPMYILAGTSSTSIQNNIIQELYNMFDIEPKYDKHGAFTLCGVKVVPVYTGSISGLKRARGFTAFGAYVNEASLANEQVFKEIISRCSGEGARIVWDSNPDIPTHWLRRDYINSGDDMIIDFHFKLDDNTFMSDRYRENIKSATPAGVFYDRDILGLWVTGEGVVYRDFSENMFVDNVPEDITKVYAGVDWGYEHFGSIVVIGETSDGSVYLLEEHAHQYKEIDFWVDLAKNIKERYGNITFWADSARPEHVARFQREQLKTFNANKAVLSGIEEVAKLMKAGHFFVVSNKVSKFKDEVYQYIWNEKTGEPVKENDDVLDAVRYAIYSQHTQPKATVRRRSDYGL*	hallmark_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0017	shell	direct	high	1217	0.999	GCA_011714665.1_00383
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	14075	14521	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	14076	14522	GCA_011714665_1_8_18	GCA_011714665_1_8_18	-	42571	.	PFAM:PF03592.15	Terminase-small-subunit	MRTGNVYQSAIFAGYSEAYAKTTASKLLENASVKTFIQTETEKMHDENILSAKEALSILSDIARGQRLEEVLMMNPVTGEVDRVTKKADNNTVIKAIAEILKRYPTAKQAEKLELEIEKLKSQIGVDNEQDDKLIEFAKALRGAFDDK*	hallmark_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0018	shell	direct	high	446	0.998	GCA_011714665.1_00384
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	15058	15504	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	15059	15505	GCA_011714665_1_8_19	GCA_011714665_1_8_19	-	42571	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MRLLKSVDVQFTKKNVYDVLESYRSYVRMAGAEYLPKITTTYSFEPKTFTGKNTATENMVIEHVDAEAEVLEIERAVNCIMDPYVRQVITKKYMDMKIQLSDKAIYMDLGYSESEFYRMLSRGALEFAEAYRKGKLIVFRKFLGDICK*	mmseqs_cdd	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0019	shell	direct	high	446	0.998	GCA_011714665.1_00385
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	15634	15849	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	15635	15850	GCA_011714665_1_8_20	GCA_011714665_1_8_20	+	42571	.	PFAM:PF04014.17	transcriptional-regulator	MNTVKTRKVGNSVTVTIPKTLNVPEGQEMFVYKGVDNVIVLAPKIPDPFNGDADLRMEDDFEGVKFLDSEI*	phrogs_hmm	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0020	shell	direct	high	215	0.995	GCA_011714665.1_00386
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	15833	16186	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	15834	16187	GCA_011714665_1_8_21	GCA_011714665_1_8_21	+	42571	.	COG2337	mRNA-degrading endonuclease, toxin component of the MazEF toxin-antitoxin module [Defense mechanisms]. 	MTAKYDYIPEKQDIIWIDFDPSVGREIQKRRPAIVVSRREYSERTGFVAVCPITHGQSRLEEQGLLVPVRSNKVDGSVNPLQLYTFDFRERKAQKITTMDTTSFQKVVQLYNFIFEA*	mmseqs_cdd	nonviral_gene	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0021	shell	direct	high	353	0.997	GCA_011714665.1_00387
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	16207	16443	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	16208	16444	GCA_011714665_1_8_22	GCA_011714665_1_8_22	-	42571	.	PFAM:PF11753.7	nucelotide-kinase	MNPEIIDNINKPSHYQGANGLEAIDVVHNFVGNLSGASAFFWGNAIKYMLRFQKKNGLEDLKKARKNLDWLIEELEKN*	common_virus_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0022	shell	direct	high	236	0.996	GCA_011714665.1_00388
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	16440	16853	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	16441	16854	GCA_011714665_1_8_23	GCA_011714665_1_8_23	-	42571	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MIPKFRAWDRLRKEMNYKVMVGNCDLSDENWTCPIIWIEEKKDWLHFDDYECIMQSTGLKDKNGKEIFEGDVLEIQDEGEVLGNAKLTWDNEQAVFMIEAISVDDIAPFHEILSDESYSYRVVGNIYENPELLEDKE*	mmseqs_cdd	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0023	shell	direct	high	413	0.998	GCA_011714665.1_00389
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	16850	17110	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	16851	17111	GCA_011714665_1_8_24	GCA_011714665_1_8_24	-	42571	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILLSAGLNIWQMDRIAELEKKKPMVIYKADNAGAEIFGKVVEKGRHGKLYTLTIRDYGVFVVTKDVYEKVKVGDEVML*	mmseqs_cdd	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0024	persistent	direct	high	260	0.996	GCA_011714665.1_00390
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	17107	17253	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	17108	17254	GCA_011714665_1_8_25	GCA_011714665_1_8_25	-	42571	.	.	hypothetical protein	MKRPNRYPYTRSQWAEETVNHYTYKSDICYTSHILENRLTGEIKEVID*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0025	cloud	direct	high	146	0.993	GCA_011714665.1_00391
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	17275	17478	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	17276	17479	GCA_011714665_1_8_26	GCA_011714665_1_8_26	-	42571	.	.	hypothetical protein	MFESVVVDMVTNNGLVGEFIDIDEVAYVDFDKELIYFKAHDALIPRMIPVTRSSLLRVKKALFYKSI*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0026	cloud	direct	high	203	0.995	GCA_011714665.1_00392
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	17478	17975	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	17479	17976	GCA_011714665_1_8_27	GCA_011714665_1_8_27	-	42571	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MKVQRLIEKYKKLEGVWNAEGAELARQIFLQDLEQLDKPQPVKVKKFVAEWIEEARKACKDVAELFEFDFTNDEVRKWFMQERPFDLVARAWLDGYEVEKEKQYLVKMPKANFNGNIQILSFKNNSFFWSSNWEGYKAHHTRKELEEAGFGWVFDCEGVEVEEVE*	mmseqs_cdd	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0027	cloud	direct	high	497	0.998	GCA_011714665.1_00393
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	18143	18310	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	18144	18311	GCA_011714665_1_8_28	GCA_011714665_1_8_28	-	42571	.	.	hypothetical protein	MIGVTYQEIHLFVEFLKKQYGQGRPDYIEALNNLDGMVEVSYREAIERFLDDELR*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0028	persistent	direct	high	167	0.994	GCA_011714665.1_00394
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	18326	18751	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	18327	18752	GCA_011714665_1_8_29	GCA_011714665_1_8_29	-	42571	.	PFAM:PF05866.10	Endodeoxyribonuclease-Rus	MQERLILKFELNRKQMINSNDRPHFHQKAKTTKFLRQLAEYEGKNVLRDYFGLPYSEDKPCKVKVRIYPPTNRKYDPPNWSPTSKALFDGLTDAKIWTDDNYNVIVSTEFMHGGKSGNKNYRIELEIYEYHEILQRIVDGI*	common_virus_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0029	shell	direct	high	425	0.998	GCA_011714665.1_00395
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	18729	19091	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	18730	19092	GCA_011714665_1_8_30	GCA_011714665_1_8_30	-	42571	.	PDB:2FJR_A	Repressor-protein-CI	MNRLKELRQEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQQLADYFGVSVGYLLGYESNPLERLKSLVDELKEHKDLLGVLDWYTAFDLANDILAIASVEKARWLGRLNAGEIDS*	common_virus_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0030	shell	direct	high	362	0.997	GCA_011714665.1_00396
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	19104	19526	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	19105	19527	GCA_011714665_1_8_31	GCA_011714665_1_8_31	-	42571	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MINNVVLVGRLTKDAELRYTQSNVAVATFTLAVNRTFKSENGEREADFINCVMWRKQAENLANWAKKGALIGITGRIQTRTYDNQQGQRVYVTEVVAENFQLMEFKKDGSQPVVDNHDQQAPNFARNSNPMDISDDDLPF*	common_virus_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0031	shell	direct	high	422	0.998	GCA_011714665.1_00397
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	19530	20153	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	19531	20154	GCA_011714665_1_8_32	GCA_011714665_1_8_32	-	42571	.	pfam04404	ERF superfamily. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to ERF.	MTKLAFSELQKRMQLEKKKKQGVNYAFRNAEDIYTKFKEINTDWELTVSDDLFGVGERIFVKSTAIVSNGDKQFQSVGFAELDKVPVFKTGNQQMQVPQWTGAVSSYARKYALQGLFGIGEKDVDEYPSDMNEAENQQAKKANDPVISVEKANYYLKEIAAISVEKGKEDGSIVKWFLNHLGVVDYKMIKQSQIEDADMLLAKLKGN*	mmseqs_cdd	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0032	shell	direct	high	623	0.998	GCA_011714665.1_00398
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	20164	20637	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	20165	20638	GCA_011714665_1_8_33	GCA_011714665_1_8_33	-	42571	.	PFAM:PF05565.10	resistance-protein	MATLYELTGQFLDVYNLELDEETKLDTLDSIDWEIEYETKVENYIKVMKNLEADVEARKNEIKRLMELNKADEKKKEHLKDTLSASMSLTGHERVDTPLFKVSFRKSQAVEVDEAVLPEYYKVATWKADKKRLKEDLKKGLEIIGASLVEHKNLSIR*	common_virus_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0033	shell	direct	high	473	0.998	GCA_011714665.1_00399
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	20764	20940	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	20765	20941	GCA_011714665_1_8_34	GCA_011714665_1_8_34	-	42571	.	.	hypothetical protein	MIQELHEEIDNWRAEYIHLGRELGEIINEQQNIILKLQNENRHLKRENWNLKKTKGRR*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0034	shell	direct	high	176	0.994	GCA_011714665.1_00400
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	20937	21059	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	20938	21060	GCA_011714665_1_8_35	GCA_011714665_1_8_35	-	42571	.	.	hypothetical protein	MLMFDYDRDIMQPPEEREELDPSQYIYVGCGQYRYVGDEV*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0035	shell	direct	high	122	0.992	GCA_011714665.1_00401
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	21046	21189	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	21047	21190	GCA_011714665_1_8_36	GCA_011714665_1_8_36	-	42571	.	.	hypothetical protein	MTRIELENRVWLLANHEEKNELLDLGLTSKARYVKRVLELGKVYAHV*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0036	shell	direct	high	143	0.993	GCA_011714665.1_00402
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	21206	21553	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	21207	21554	GCA_011714665_1_8_37	GCA_011714665_1_8_37	-	42571	.	.	hypothetical protein	MFEPPLVSQLLGTGAVILGFIGAGLLAHQMDKQEEEKIRQKEEDRREEQEFASMIIQGYNQAYERGREAQRQEIRKNIRREFKGFTYDNEPPQGLRPEPLALPEPRRSRYEKYLG*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0037	shell	direct	high	347	0.997	GCA_011714665.1_00403
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	21553	21810	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	21554	21811	GCA_011714665_1_8_38	GCA_011714665_1_8_38	-	42571	.	.	hypothetical protein	MINKDQIIKAQQEKIERIEQLQKKLHKLSTLGLLTTKLLGLPNELEKPLKVTHDISHVIKDVLDGMSPSEAIKQNMAEEDDEEEE*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0038	shell	direct	high	257	0.996	GCA_011714665.1_00404
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	21898	22164	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	21899	22165	GCA_011714665_1_8_39	GCA_011714665_1_8_39	-	42571	.	.	hypothetical protein	METVQIVRIKDVIIEKISANDEELEHIFGCSKRQAGDMRREMKKLPSQQKYLRNDGQLVTIKGFDAYLQYRGSQSWKKEMSKTVKMTR*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0039	shell	direct	high	266	0.996	GCA_011714665.1_00405
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	22283	22522	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	22284	22523	GCA_011714665_1_8_40	GCA_011714665_1_8_40	+	42571	.	.	hypothetical protein	MTEIHACLCGNWVNLSADDDCVMGPNMANPYIWWEENAELYSPISKPEANSMYHQDYIYIHYRGADYRIHPMFIQIVSR*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0040	shell	direct	high	239	0.996	GCA_011714665.1_00406
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	22515	22685	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	22516	22686	GCA_011714665_1_8_41	GCA_011714665_1_8_41	-	42571	.	.	hypothetical protein	MKEAVKEFLKFRSRFTKIEWFEINQAIEARLNQKADQLKLDDLDLEIISSRLEKVI*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0041	shell	direct	high	170	0.994	GCA_011714665.1_00407
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	22682	22825	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	22683	22826	GCA_011714665_1_8_42	GCA_011714665_1_8_42	-	42571	.	.	hypothetical protein	MEDKIIELADYFISESTTYREAKIACEKLLKQVSHEIELRAMESRTV*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0042	persistent	direct	high	143	0.993	GCA_011714665.1_00408
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	22942	23109	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	22943	23110	GCA_011714665_1_8_43	GCA_011714665_1_8_43	+	42571	.	pfam14168	YjzC-like protein. The YjzC-like protein family includes the B. subtilis YjzC protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length.	MANTPIKPGTDNQKPGRYVEVGPRGGKVTNGHTATIGKGDRLPPTSAKGNGWKKV*	mmseqs_cdd	nonviral_gene	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0043	shell	direct	high	167	0.994	GCA_011714665.1_00409
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	23106	23249	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	23107	23250	GCA_011714665_1_8_44	GCA_011714665_1_8_44	-	42571	.	.	hypothetical protein	MIHHYITHYASNGKDYAEAWIQIDFLGMCFCVWKKRTTIERLYANED*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0044	shell	direct	high	143	0.993	GCA_011714665.1_00410
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	23264	23389	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	23265	23390	GCA_011714665_1_8_45	GCA_011714665_1_8_45	-	42571	.	.	hypothetical protein	MRPRRYPYSGKRKKPINFQIDLEKFKRLSYEAIHDTSQVTQ*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0045	shell	direct	high	125	0.992	GCA_011714665.1_00411
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	23401	23619	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	23402	23620	GCA_011714665_1_8_46	GCA_011714665_1_8_46	-	42571	.	.	hypothetical protein	MRSNLAMTQSLDAPCQQVTIKERQQIIEQFEEKHYGLSSLLKERLLITSDYQFTRKMNELRAFARNGGIYTS*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0046	shell	direct	high	218	0.995	GCA_011714665.1_00412
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	23558	24412	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	23559	24413	GCA_011714665_1_8_47	GCA_011714665_1_8_47	-	42571	.	PDB:4M4W_K	Replicative-helicase	MRAVSRDELQGRFLQIETLNTQCPKHEGVYMWRSVNPCTQNVLTYCPECGQEKIHSQAGEQLAQAEAQIRNTRSYSLFAKESIIPPDLKNATIGSFEIHTDQDAEAVNFAKRVTVDYVKERYEGNTIISGPPGVGKSHLAIGIAKTLNESFQKFQLKRSVVYIPSMELFSRMKDAFRYKDSKWEERRTIQFLQKVDYLILDDLGKESSVGDEIKQGNNWMQKVLYQILENRTNTIITTNYGGNHLEKLYEKSLVDRITKGNMKTNAFKFSNDTESRRTLSASDY*	rep_hall_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0047	shell	direct	high	854	0.999	GCA_011714665.1_00413
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	24422	25264	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	24423	25265	GCA_011714665_1_8_48	GCA_011714665_1_8_48	-	42571	.	PFAM:PF09681.9	phage-replisome-organiser	MVIQKDDIEDFLDFIKIPVVLIKDKAFSELSMEAKVLYSIMKDRLKLSLKNNWIDEKGAYIHLSIEELQKDYFVQLSKPTIIKRKKELVDFGLIELKKQFNKSDKIYVNRLSSYISKNSLPTEVKNFDHISKNSLPTEVKNFDSNQSYINQSYINRITEPDGAGANNLYSIEDAPENDLGIVHDWIFSEFGRYPTPFEIEDLKYFLQDHSKEVIKLAIKECVGNGKPYFKYLESILRDWKQKGLVTAELVENRQRPKRSSGKPSSELRLSDDGYNPRLGF*	rep_hall_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0048	shell	direct	high	842	0.999	GCA_011714665.1_00414
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	25304	25516	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	25305	25517	GCA_011714665_1_8_49	GCA_011714665_1_8_49	-	42571	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MQKISLKMARIKTGMTQEEIAKKLGISRNTYMDYERYDTPMRITTAIDFCRIVDIPLDEIFFEKNYTSSV*	mmseqs_cdd	nonviral_gene	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0049	shell	direct	high	212	0.995	GCA_011714665.1_00415
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	25529	25747	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	25530	25748	GCA_011714665_1_8_50	GCA_011714665_1_8_50	-	42571	.	PFAM:PF13744.5	transcriptional-repressor	MLEKHNIWCFLMWDKIEKQLKIKGWSMYRVAKESNVHPSNFSNLKAGRMKEMSWTNMCKIADALEVSLDEFR*	phrogs_hmm	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0050	.	unmatched_CDS	none	0	0	.
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	25863	26087	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	25864	26088	GCA_011714665_1_8_51	GCA_011714665_1_8_51	+	42571	.	.	hypothetical protein	MSKLSHKPNHVVKKLTWENLDNILLSYFSESTTDKPSAVIQLSDFEMSKAEIIEEATAQGYQVIDNSDGYLKFL*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0051	shell	direct	high	224	0.996	GCA_011714665.1_00416
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	26050	26205	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	26051	26206	GCA_011714665_1_8_52	GCA_011714665_1_8_52	-	42571	.	.	hypothetical protein	MRPRRYPYSGKRKKQSDRQIAKLKRDIDVNRTNISSLKFVIETLSNHQNYR*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0052	shell	ambiguous	low	39	0.25	GCA_011714665.1_00416
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	26264	26974	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	26265	26975	GCA_011714665_1_8_53	GCA_011714665_1_8_53	+	42571	.	PFAM:PF13643.5	DNA-binding-protein	MSFDLSKLSLGSRFAGNSKAFQCPVCSGFSSHLWTYNPIDINRDYKESIKFIIIAQCQACNQFSIWITNEIQITYGSRIVLNTSDATSTLIFPNVAEGVPKPNNDMPDDVKEIYIESGEVLNISPRASAALSRLAIEKLVAHLNAQGKDLNTQIGSLVSKGMPIEIQQMLDSVRVIGNNAVHPGQIDIKDNKELALSLLSFINLIVDNRITQPKKILDIYNLLPDSYRNSIERRDN*	phrogs_hmm	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0053	shell	direct	high	710	0.999	GCA_011714665.1_00417
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	26971	27102	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	26972	27103	GCA_011714665_1_8_54	GCA_011714665_1_8_54	-	42571	.	.	hypothetical protein	MESVEIVELIKVTFKRGKGTEDDPIRVVTQYWDKENVLIFEKD*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0054	shell	direct	high	131	0.992	GCA_011714665.1_00418
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	27273	27416	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	27274	27417	GCA_011714665_1_8_55	GCA_011714665_1_8_55	-	42571	.	.	hypothetical protein	MMEHIIKSLATKDTTTVILVLGLVNEARLWHKQYLAYKLKDKELKKK*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0055	shell	direct	high	143	0.993	GCA_011714665.1_00419
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	27489	27764	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	27490	27765	GCA_011714665_1_8_56	GCA_011714665_1_8_56	-	42571	.	.	hypothetical protein	MNTLNEKAINIFKAVAKETLIQGTYEENFLYSQLERFCTNCRQFAFGWTELAEEIERQERYLLDAGFTQEEIDDIRFDAAFAGMLDKMNVA*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0056	shell	direct	high	275	0.996	GCA_011714665.1_00420
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	27933	28688	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	27934	28689	GCA_011714665_1_8_57	GCA_011714665_1_8_57	+	42571	.	PDB:2FJR_A	Repressor-protein-CI	MDSLAQNIKYYRKLSGLTQKELAKKLSVAPTAISAWEVGRNQPLMNNIEQMSAIFGIKKSLLLGEDFSSHVDKATSPIQTIYDELEPPRQGKVLNYAKRQLDEQKNEEETKINEVSEVISLYQVEVVSETAAASGFNYGFGYDDTDREIIEVDEQPPHHDIATKVSGDSMQPDYQDGDILYLVDKGLTTYNGDLAVIAYGDRSYFKKIYTENGRLRLVSLNDKYEDITLDFPPAEDTHIKIYAVIGVYRGE*	common_virus_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0057	shell	direct	high	755	0.999	GCA_011714665.1_00421
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	28689	29453	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	28690	29454	GCA_011714665_1_8_58	GCA_011714665_1_8_58	+	42571	.	PFAM:PF02452.16	antitoxin-mazE-like	MTIQNKQILKASKNFEKVHSTFKNNNKFRFLPNWLEKESNLFLSETQNTSKSYNVLKRGSLIFVDFGINIGSELSNRHWAVVLNKNDSPKSRNLTVLPISSKEKKFSVMIDEVIQQKSKRFLLPILDKIGFDYFSIIHYALTEITPFDLGSADEIYQEFLIQYGDAYNSESAKEIYDNGAGMEKVENTNRKLKDLVNHYQRFNKISYAKCDQIKTISKDRIIYINELDPCGKIKVSDETLDRIDEKLKELYLKN*	phrogs_hmm	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0058	shell	direct	high	764	0.999	GCA_011714665.1_00422
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	29903	30022	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	29904	30023	GCA_011714665_1_8_59	GCA_011714665_1_8_59	-	42571	.	.	hypothetical protein	MPFTILDILTLRVAKLCECGDFFELFPKWKQLAARQIIK*	.	hypothetical_protein	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0059	.	unmatched_CDS	none	0	0	.
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	30074	31201	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	30075	31202	GCA_011714665_1_8_60	GCA_011714665_1_8_60	+	42571	.	PDB:1Z19_B	Integrase	MWMEELPNGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEEIYNLFYKSWAQTVKESTKHNCKSVDKKMKEIIPSDTILANLDRRFLQEAIEKIIESNGYITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKALIDVLNRREYHQKYADMVLVLALTGMRYGELTALQLKNIDFENNKIEITGNFDSVNKIKTLPKTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQILKKYGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTEDMEDKLVNKLDTIF*	common_virus_hmm	common_virus	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0060	shell	direct	high	1127	0.999	GCA_011714665.1_00424
GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote	cenote	CDS	31289	32200	GCA_011714665.1	RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665.1_RXXI01000017.1	GCA_011714665.1|RXXI01000017.1	GCA_011714665_1_8	GCA_011714665_1_8@C0	31290	32201	GCA_011714665_1_8_61	GCA_011714665_1_8_61	-	42571	.	TIGR00647	DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division]	MSFTVAVKEEILGQHHLSRYELSAIIKMSGSIGLSTSGLTLSVVTENAKLARHLYESFLHFYEIKSEIRHHQRSNLRKNRVYTVFTDEKVQDLLSDLHLADSFFDLETGIDEAILSDEEAGRAYLCGAFLANGSIRDPESGKYQLEISSVYLDHAQGIASLLQQFLLDAKVLERKKGAVTYLQRAEDIMDFLIVIGAMQARDDFERVKILRETRNDLNRANNAETANIARTVSASMKTINNISKIKDIMGLENLPVDLQEVAQLRIQHPDYSIQQLADSLSNPLTKSGVNHRLRKINKIADEL*	mmseqs_cdd	nonviral_gene	C0	32201.0	0	32201	GCA_011714665.1|RXXI01000017.1@region_1_32201@tool_cenote_CDS_0061	persistent	direct	high	911	0.999	GCA_011714665.1_00425