core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	2	1201	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	3	1202	GCA_011714895_1_27_1	GCA_011714895_1_27_1	-	20059	.	PFAM:PF07902.10	minor-structural-protein	MDALTRRQFDRAMFAKERTLAIRVGDYTSRDIKEASFEYGYIKGDTYKPGGTCAGSGKITFTSIITTFNKLDTLHPEIGLLVGDTYQWVKMGEYFINDIEIDRNRNTTTLELMDGMFKLNREYVTDLHFPAEVREVIQEICLKTGIELANDYFGISAMRYHVEQVPEGKKLSFRDMLSAMTQMIGMSCFFNREGKMEIRDLTESNITINADSYFLHGLTKSEIEYQIAGITCKTDKKPLTVGMKTGRSLELDNVFMTQSALNDLYYKLKNLTYYPYNLNYQGHLLLEVGQWVTIQTNKKETFKVPVLSQSFTFKGGLRGRISADSKAGNDTQYSYEGTITKQIKQQDGIEAKIQAQIEAADAAFDAEFDKREKAITDAIELAKAKAEEVKQEVSDTINQR	common_virus_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	1206	1556	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	1207	1557	GCA_011714895_1_27_2	GCA_011714895_1_27_2	-	20059	.	.	hypothetical protein	MAQLTINGVAVKPPKSFQVGIQDIDGETGRNANGDMVRDRITTKRKLDCEWGMMTQGELSQLLHAVSSEFFEVSYPDPMDGQVTKTFYVGDRTAPSYTFTEKFKPWSGAKFNLVER*	.	hypothetical_protein	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0002	shell	direct	high	350	0.997	GCA_011714895.1_01233
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	1565	2329	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	1566	2330	GCA_011714895_1_27_3	GCA_011714895_1_27_3	-	20059	.	UniProtKB:R4KJ43_9FIRM	Minor-tail-protein	MGSWFGDRWNESKDALAEANTWLGDKFKSGRGKVNSAFEKVGSWFGDRWKDIKDGVKEADTWFGEKFESAKKKTQNPFQKIGSWFGDRWKNMQDALKEIPNWFKNLFNDAMDNAKNIVKSGIDKLKSFFNFDWSLPKIKLPHFNISGSFSLMPPRIPSFSVDWYARGGVFNSPSIIGVGEAGQEAVMPLERNTGWISILAQKLAERMPANNVPTGYSLPAGDIVIQIAGHEFGRVAIQEINKEHERAGQTLLKI*	hallmark_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0003	shell	direct	high	764	0.999	GCA_011714895.1_01234
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	2489	4618	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	2490	4619	GCA_011714895_1_27_4	GCA_011714895_1_27_4	-	20059	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MAMIESTEAFKKFANGQSWQQLDYQTQQQIRLMAILEQATAKYGNTLSNSVNGRISLFKSLMKDAALNLGNSMLPIINAIMPVLNSFAMVLKNVTAKLAEFIALMFNKKATVKDGVGGAVGDMGNAMKDAAGGAGDLADAVDDAGDSAGGLADNLGDSAKNAKKAAKELLGLLGFDEINILQKPKDDDAGGSGGGGGGKGGKGKGGGGGPFKDILPEVELTDMDNQFKSIFDGLGDKLKGLFDLFKKGFDAAFRPEGIERIKTALDQIAKTMGEIATDPRVVNAFNRMAEKIAYALGQVTGSIATIGLGIGVFLAESIANGLGRQKEHITRTLVALFDNIGNIAEAVGNIAQAFSSAFYDVITSTGAVRIGSAIVSTLLSLTSTIVEVGSKLAGSLFKGFEKVVVTSAPKISSMLQSLLDIVAPIFETIESVVDKFGDGLSRVYDEHVAPAIDSIANAFNGLIDIIQILWEGSWKPFAEFLSNTFGISIETVADLLGGIILEALKLLADTIKLVADGFTAFSDWCKENKEIISVIANVIGTLATAWQGIKFLSWAEQAGGLAGAFELLSGKVSFIVSGIKNLGLALKALTFDKLVSFGETIYLNALYAKDFVVNSGKLIAELGKTALELGKSALAWGVHAAQMGLAAAAEIAQSIAAGVAAAATWALNGAIAVLTSPITLVIAAIAALIAIGVLLYQNWDTVVEFAKTA*	hallmark_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0004	shell	direct	high	2124	0.997	GCA_011714895.1_01235
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	4920	5483	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	4921	5484	GCA_011714895_1_27_5	GCA_011714895_1_27_5	-	20059	.	PFAM:PF04582.11	tail-length-tape-measure-protein	MATLDELKVMIDAEIAPFRKKMKEVENQVKGTSDQVKNATAKVREQSNSIGSAFGKLAKFAGFAILGKKLLDVGMYSTQTALEVSAAMNQIKRQMGESSQSFLKWVNDNANAMNMGVGEATNYGAVYSNLFSGFIKDTNKLSAYTAKMLQTSAVVAEGSGRTITDVMERIRSGLLGNTEAIDFCRTA*	phrogs_hmm	hypothetical_protein	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0005	shell	direct	high	563	0.998	GCA_011714895.1_01236
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	5470	5820	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	5471	5821	GCA_011714895_1_27_6	GCA_011714895_1_27_6	-	20059	.	.	hypothetical protein	MFLDIGGKPLDFWDLTVLEIREMIESYNRVKIQERKEKIIDSYRLSQMISNHVSLFLSKDAKVFEFWEYAPELFVEEQQAVEQERQRQELLLHKERMRDFAERHNRKRKEEVNGNS*	.	hypothetical_protein	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0006	shell	direct	high	350	0.997	GCA_011714895.1_01237
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	5859	6239	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	5860	6240	GCA_011714895_1_27_7	GCA_011714895_1_27_7	-	20059	.	PFAM:PF12363.7	tail-assembly-chaperone-protein	MALPYSIWKISDEKELKLRLSSHQAAKVEEKIGMNLLKIFMPEAGEEFPLPPLKVVLLLIHGALQKYENGYSLEDVYDLYDEYVDNGGDQTTFMTEVLMPLFEVSGFTPRGSKGKKTSKKKMTVVE*	hallmark_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0007	shell	direct	high	380	0.997	GCA_011714895.1_01238
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	6244	6657	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	6245	6658	GCA_011714895_1_27_8	GCA_011714895_1_27_8	-	20059	.	PFAM:PF16463.4	tail-tube-protein	MLANGITLSYSETKGSYTKLVGLKEVPEFGIEPEKVENTTLEDKVKKYEFGIGDAGELEYKFSYNNSSETAPYRVLRKAADDKKKLYFEQAYPDGTKVNFEGQVSVKLGGGGVNAVIEFTLKIALQSELEFTDGLGG*	hallmark_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0008	shell	direct	high	413	0.998	GCA_011714895.1_01239
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	6660	7028	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	6661	7029	GCA_011714895_1_27_9	GCA_011714895_1_27_9	-	20059	.	PFAM:PF05657.10	tail-component	MINIKPVIYKELQKVADNVTDTYPSDWETFPVVIFLEEQNKPGDWFDDQEQKSSIRYKVDIFDDTSTSELAVKINQIFESLGLRRTDCQDVPDPSHLRHKVMRFEGVVDLHSELVFQFRMEN*	hallmark_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0009	shell	direct	high	368	0.997	GCA_011714895.1_01240
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	7025	7540	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	7026	7541	GCA_011714895_1_27_10	GCA_011714895_1_27_10	-	20059	.	PFAM:PF04883.11	putative-tail-component	MSELRGADRLIAKCRRLASKKTGEDIVLRAVHNAAIKVVQADAKRLAPGNNGELRNSIKTRVKMDGDKAIGEVYTNLHYAPYVEFGTGPKGQASHSGISPEVSVTYRSSPWYVHEDQINVGPYHFQKIGEFYKMYGQPAQPYLYPALRDNQERVSKNISDYVRRKIREQIK*	hallmark_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0010	shell	direct	high	515	0.998	GCA_011714895.1_01241
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	7557	7853	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	7558	7854	GCA_011714895_1_27_11	GCA_011714895_1_27_11	-	20059	.	PDB:2KX4_A	head-closure-knob	MFLKQSRLKPYPMRRFEKTVTEEGVVKEGYAKEAETVRLELWPASSKLQSEMYGERVNDILNANANKSATIKVKDGVCIDSPTEVTHRVISKKVYTYH*	hallmark_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0011	shell	direct	high	296	0.997	GCA_011714895.1_01242
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	7834	8145	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	7835	8146	GCA_011714895_1_27_12	GCA_011714895_1_27_12	-	20059	.	PFAM:PF05135.12	head-tail-adaptor	MSIELLKKMTGEEDTQLLMLLQTRATNLILSETNRTSLTPALSRLIPEVAIELHNRSGAEGEHSRTEGGIAVVYGENGLSTGLLQRIRMHRLARVAGHVFEAE*	phrogs_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0012	shell	direct	high	311	0.997	GCA_011714895.1_01243
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	8147	8335	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	8148	8336	GCA_011714895_1_27_13	GCA_011714895_1_27_13	-	20059	.	.	hypothetical protein	MKFKIKQDFYDWELNVKRLAGEELEITEERYAELADNFASNGVAISDVLEEILPEPEFLEED*	.	hypothetical_protein	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0013	shell	direct	high	188	0.995	GCA_011714895.1_01244
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	8325	8507	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	8326	8508	GCA_011714895_1_27_14	GCA_011714895_1_27_14	-	20059	.	PFAM:PF09124.9	endonuclease-VII	MSLLLRRHYIQEEQAGQYSDLENKTLEELKNLAKEAGITGAYKLSKAEIVEVLEDLKSEI*	phrogs_hmm	hypothetical_protein	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0014	shell	direct	high	182	0.995	GCA_011714895.1_01245
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	8519	9361	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	8520	9362	GCA_011714895_1_27_15	GCA_011714895_1_27_15	-	20059	.	PDB:4AN5_F	Major-Capsid-protein	MTAGQTKLATMVNPEVMADMVSAKLPKLIKFTPLAYVETALQGQPGNTLTVPAWEYAGDATEVGEGQAISPDKLTTKKTTMTIKKAAKGYEITDEALLSGLGDPLGQATYQLGLAIANKIDDDLVAVAKTATQHVAETPTTLEAIDKALDIFEDEEDAQYVAIINPKDATKLKTDVAKEWTKGSELGANMVVSGTFGEVAGVQIVRSKKVEEGKGFLVKVSPSQTQTDDANKYGAFVIMLKRDVAIETDRDILKKTTVITGDKHYGVYLYDPTRVVKFGE*	hallmark_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0015	shell	direct	high	842	0.999	GCA_011714895.1_01246
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	9367	9936	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	9368	9937	GCA_011714895_1_27_16	GCA_011714895_1_27_16	-	20059	.	PDB:6B0X_d	capsid-scaffolding-protein	MNEETQTVETVEEQKVPAEPAQQPQDEKKYTDADVDAIIDKKFAKWKSEQEAKENEAKKLAKMNADEKQKYQLDQREQELADREKAIARKELTAEAKAMLSERDLPVELVNVVDLTSAETVSQSVAVLQKSWEQAVQKGVQEKLKGGAPMKQAPVDSDGITKEEFARMGYQSRNELYQKNPELYKKLKG*	hallmark_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0016	shell	direct	high	569	0.998	GCA_011714895.1_01247
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	10226	11722	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	10227	11723	GCA_011714895_1_27_17	GCA_011714895_1_27_17	-	20059	.	PFAM:PF06152.10	minor-capsid-protein	MDKAEKQADQFDKVYQEAKTYLDKEVNKIFDKFQRDYGLSQVDARQVLKNMKDKKNLNELRKVLEARPNAPNIQRLLADLDSPAYSFRMKRLERLSDDLDRMRESIYHSEKTGSDAFYSDLMKDSYYKATFDLQQQTGLAYGFSGLPESEIKHLQSFSWVGDGSTYSTNIWKNTGKLTSSIKDELLMSLMTGRGTRETAQAIAERFDVGQNDARRLVRTESAFFHNQMELLSYEEADIEKYIFVAVLDKRTSHICQEHDNKVYDRDKATPGVNCPPMHPWCRSTTVAYDEDADYSKLKRRARNPETGKTELVPADMTYKEWYSKYVAKDVKNEIQDYKKSDQTVSRYNTQKLFSDVSNAWDEIGKGGLSKEQLVGLLKSEYELGNFSSDITKLIGVSSAYIDVSSLATSLVRHGQQYSLDEFMLIKEAVQKPYLILDNSERVEKSIISYVKIPNKDKVIMEAVMVPRDEMLVIHFNKVGIRQVKKNGKNMLTLYKKEK*	hallmark_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0017	shell	direct	high	1496	0.999	GCA_011714895.1_01249
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	11685	13154	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	11686	13155	GCA_011714895_1_27_18	GCA_011714895_1_27_18	-	20059	.	PDB:5A20_A	Portal-Protein	MYQYLTYPRDGYDEGSLKKDLIYKLITKHSTEGSRLKKLKSYYLGEHAILNHKRRNENAPNYKTVANHAKDIADTATGYFMGNPIKYNNTAEGDIDELLTAFDGAEIDQVDAQNALNMAIYGRAYEYIYAKEGLTELDSTSIDPENTFMVYDDSIERKPLFAVYYYQVKDDTKDTTKYQAEVFTENLHYHMVLRSTDSGTTQNEQVESHNLGQIPIIEYRNNHFAIGDYEQQISLIDAYNSLMGNRVNDKEQAVESILVLYGTQLADTPEDAKVAMKILSEEGLLELPGDSARAEFLKNTLDESATEILRTALKEDIYTFSHVPNLTDENFAGNTSGVAMEFKLMGLEMITKTKEANYKRGLRQRIAIFAHYLGMKQIALESHSIVPQFSRGLPKNLLEISQIVNNLEGKVTNRQLISLLPFVEDPDAELEALEEEKKKNMEDMSMFNKDNTKPEDEVEDEESGVLGEEESQSDLPADGQGRKAGRPVR*	hallmark_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0018	shell	direct	high	1469	0.999	GCA_011714895.1_01250
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	13166	14383	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	13167	14384	GCA_011714895_1_27_19	GCA_011714895_1_27_19	-	20059	.	PDB:5OEA_B	Large-Terminase	MTTNKFTKRQEEVLTRVLNDDFFICGLHGAKRSGKTVLNNMVFMNEIARVRETADRLNIDEPMYILAGTSSTSIQNNIIQELYNMFDIEPKYDKHGAFTLCGVKVVQVYTGSISGLKRARGFTAFGAYVNEASLANEQVFKEIISRCSGEGARIVWDSNPDIPTHWLRRDYINSGDDMIIDFHFKLDDNTFMSDRYRENIKSATPAGVFYDRDILGLWVTGEGVVYRDFSENMFVDNVPEDITKVYAGVDWGYEHFGSIVVIGETSDGSVYLLEEHAHQYKEIDFWVDLAKNIKKRYGNITFWADSARPEHVARFQREQLRTFNANKAVLSGIEEVAKLMKAGRFFVVSNKVSKFKDEVYQYIWNEKTGEPVKENDDVLDAVRYAIYSQHSQPKATVRRRSDYGL*	hallmark_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0019	shell	direct	high	1217	0.999	GCA_011714895.1_01251
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	14370	14864	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	14371	14865	GCA_011714895_1_27_20	GCA_011714895_1_27_20	-	20059	.	PFAM:PF03592.15	Terminase-small-subunit	MDIGLNQRQKMFASEYLRTGNVYQSAIFAGYSEAYAKTTASKLLENASVKTFIQTETEKMHDENILSAKEALSILSDIARGQRLEEVLMMNPVTGEVDRVTKKADNNTVIKAIAEILKRYPTAKQAEKLELEIEKLKSQIGVDNEQDDKLIEFAKALRGAFDDK*	hallmark_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0020	shell	direct	high	494	0.998	GCA_011714895.1_01252
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	15446	15892	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	15447	15893	GCA_011714895_1_27_21	GCA_011714895_1_27_21	-	20059	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MRLLKKVDVQFTKKNVYDVLESYRSYVRMAGAEYLPKITTTYSFEPKTFTGKNTATENMVIEHVDAEAEVLEIERAVNCIMDPYVRQVIAKKYMDMKIQLSDKAIYMDLGYSESEFYRMLSRGALEFAEAYRKGKLIVFRKFLGDICK*	mmseqs_cdd	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0021	shell	direct	high	446	0.998	GCA_011714895.1_01254
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	16021	16236	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	16022	16237	GCA_011714895_1_27_22	GCA_011714895_1_27_22	+	20059	.	PFAM:PF04014.17	transcriptional-regulator	MNTVKTRKVGNSVTVTIPKTLNVPEGQEMFVYKGVDNVIVLAPKIPDPFSGDADLRMEDDFEGVKFLDSEI*	phrogs_hmm	hypothetical_protein	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0022	shell	direct	high	215	0.995	GCA_011714895.1_01255
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	16220	16573	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	16221	16574	GCA_011714895_1_27_23	GCA_011714895_1_27_23	+	20059	.	COG2337	mRNA-degrading endonuclease, toxin component of the MazEF toxin-antitoxin module [Defense mechanisms]. 	MTAKYDYIPEKQDIIWIDFDPSVGREIQKRRPAIVVSRREYSERTGFVAVCPITHGQSRLEEQGLLVPVRSNKVDGSVNPLQLYTFDFRERRAQKITTMDTTSFQKVVQLYNFIFEA*	mmseqs_cdd	nonviral_gene	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0023	shell	direct	high	353	0.997	GCA_011714895.1_01256
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	16601	17383	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	16602	17384	GCA_011714895_1_27_24	GCA_011714895_1_27_24	-	20059	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MELQIFKNEQFGQVRMVEIEGQPWLVGKDVADILGYQNGSRDINRHVDEEDRQNYQNGTFGNRGVIIINESGLYSLILSSKLPQAKEFKRWVTSEVLPSIRKHGMYATDQLLNDPDLAIAAFQALKAERTKNKELEVQNSKLQSELDEMKPKADYVDVMLANKGLISTTAIAKNYGESAKKFNLRLKDLGIIFKQGKVWLPYAKYHTKGYVHIEPHPITHKNGMPDVSLHTKWTVKGHFFLYEILKDNGILPLIEREDVA*	common_virus_hmm	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0024	cloud	direct	high	782	0.999	GCA_011714895.1_01257
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	17389	17622	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	17390	17623	GCA_011714895_1_27_25	GCA_011714895_1_27_25	-	20059	.	.	hypothetical protein	MNNVILLNNQQEVINEEPWTYKQFKDWVDNQVDFAEAMSLPANKKVLDVMMEKNAEAWAEIADMLENRKLIYKMKKG*	.	hypothetical_protein	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0025	cloud	direct	high	233	0.996	GCA_011714895.1_01258
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	17615	17848	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	17616	17849	GCA_011714895_1_27_26	GCA_011714895_1_27_26	-	20059	.	.	hypothetical protein	MENQDFINELHMAFRSEARTEELEKWDSLIAAIVRKHFPEEQARVFFDVQATFMAVFANDLINFIINFFTEEEETNE*	.	hypothetical_protein	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0026	cloud	direct	high	233	0.996	GCA_011714895.1_01259
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	18003	18128	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	18004	18129	GCA_011714895_1_27_27	GCA_011714895_1_27_27	-	20059	.	PFAM:PF16777.4	transcriptional-regulator	MTVRITEDEFDLISDVSMKLGISKSDTIIQAVEELAQRLEE*	phrogs_hmm	hypothetical_protein	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0027	cloud	direct	high	125	0.992	GCA_011714895.1_01260
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	18185	18322	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	18186	18323	GCA_011714895_1_27_28	GCA_011714895_1_27_28	-	20059	.	.	hypothetical protein	MKDNVLYHKKFKRAEITIERTTLKEKVQGVVGIAVLALAIWYFTR*	.	hypothetical_protein	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0028	cloud	direct	high	137	0.993	GCA_011714895.1_01261
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	18740	19000	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	18741	19001	GCA_011714895_1_27_29	GCA_011714895_1_27_29	-	20059	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILVSAGLNIWQMDRIAELEKKKPMVIYKADNQGAEIFGKVVEKGRHGKLYTLTIRDYGVFVVTKDVYEKVKVGDEVML*	mmseqs_cdd	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0029	persistent	direct	high	260	0.996	GCA_011714895.1_01262
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	18997	19143	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	18998	19144	GCA_011714895_1_27_30	GCA_011714895_1_27_30	-	20059	.	.	hypothetical protein	MKRPNRYPYTRSQWAEETVNHYTYKSDICYTSHILENRLTGEIKEVID*	.	hypothetical_protein	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0030	cloud	direct	high	146	0.993	GCA_011714895.1_01263
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	19165	19368	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	19166	19369	GCA_011714895_1_27_31	GCA_011714895_1_27_31	-	20059	.	.	hypothetical protein	MFESVVVDMVTNNGLVGEFIDIDEVAYVDFDKELIYFKAHDALIPRMIPVTRSSLLRVKKALFYKSI*	.	hypothetical_protein	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0031	cloud	direct	high	203	0.995	GCA_011714895.1_01264
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	19368	19853	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	19369	19854	GCA_011714895_1_27_32	GCA_011714895_1_27_32	-	20059	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNIKALIKKYEAVECVVGIVSGKTILKTVLRDLKQLDEQKSVKVPQFVAEWIEEARKACKDVAELFEFDFTNDEVRKWFMQERPFDLVARAWLDGYEVEEEKRYIVSLNNGQPLTETQSGKVLYFNQNIITGNYKFTRKELEEAGFGWVFDCPGIEIEEVE*	mmseqs_cdd	common_virus	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0032	shell	direct	high	485	0.998	GCA_011714895.1_01265
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	CDS	19855	20058	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	19856	20059	GCA_011714895_1_27_33	GCA_011714895_1_27_33	-	20059	.	.	hypothetical protein	YFWEMAEDGMTFMGAMECIFADEKPTDYELGATKGWLPKSKEFDDWIGYSPSMAQVVIAVYLIYGGN*	.	hypothetical_protein	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_CDS_0033	shell	direct	moderate	177	0.868	GCA_011714895.1_01266
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	2	1195	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	3	1196	GCA_011714895_1_29_1	GCA_011714895_1_29_1	-	17230	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTEGNRPLNEAYNDEIVHLGNNTYQLTFRFPTSDPKWELLKEETFLTADDLHGEQDFYIFEVEKQQGYIQVYANQVISLLNNYIVSSIEVDRVSGTRVLSAFAGSITRANPFSFFSDIDDRHTLNIKDKNAMEVLAKDKHSILGQWGGDMVRNGYNLRLLKNGGSENESLFMYKKNLSSYQHKTSMKSLKTRITFKTTVKGEGENAVDHDYMVVIDSPLLGNYSQIYEDVVEVNDQDVTDEASLIAYGKQYFRTSMCDMLEDNLEISVVGQSDVAVQMFDVVSIYHEWYGLDVRKKITKYTYSPMAKRLKSIGFGTFQSSLANAIGGIVNDAVLNESRNLHQIFEERLKKEIANADRAFDAEFTKREKAITDAIELAKAKAEEVKQEVSDTINQR	hallmark_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0001	persistent	ambiguous	low	3	0.003	GCA_011714895.1_01283
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	1192	1890	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	1193	1891	GCA_011714895_1_29_2	GCA_011714895_1_29_2	-	17230	.	PDB:2X8K_A	Distal-Tail-Protein	MEYMIINGFNTSTIPKCVVTDFGEVEAAKPKVSETATLFGVNGNYRVLDGAYESYERTFAFYLPRMVAPSKIVERFQPNDNTLEFSYQLGSLFYADFVSAKYKPQGMHGWKLEVKLSMQPFRYQKNLAPLIFTASGNINNPGSVYSEPVIEIEGDGDISLTIGRTTMHLTIRRKVTIDCRHKKQNIYNADGAVQNTLRKRGGFFELAVGNNGLVFTGAVRKVTVRPNWRYIL*	hallmark_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0002	persistent	direct	high	698	0.999	GCA_011714895.1_01283
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	1890	4301	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	1891	4302	GCA_011714895_1_29_3	GCA_011714895_1_29_3	-	17230	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATELGKAYVQIIPSAKGISGMIQKEMGGEVASAGVSAGESLGSKMIGAVSGIIAAAGIGKTIGASINEGAALQQSLGGVETLFKDSADKVKGFANEAYKTTGLSANAYMENVTGFSASLLQSLGGDTDKAAETANMAMIDMSDNANKMGTSMESIQLAYQGFAKQNYTMLDNLKLGYGGTKQEMQRLLSDAEKLTGVKYDMNNLSDVYSAIHAIQENLDITGTTAREAATTFTGSFESMKAAAQNVLGKLSLGEDIQPALQSLLETTSTFLFGNLIPIIGNILKQIPNLILGGIKGVFSGIFGEGLGSIMGGIVTALGSAFLAFKAFSAVTGLLSGIPAILTTIKTAVTGLFTAMSANPIGIAIAAIAALTAGLVYFFTQTEMGRQIWQGFMDWFSGVWQSVAPVLTEVWNGIVETATTVWNNMMAVVAPIIQAVVDFIRSVWDGISLWWTENQGLIQQTFTTVWNAIQTVIQTVMPIIQSIIETAMNILAPFIETTWNNICTVVTTVWELIKIAIQTAMDVIGGIIKAVMAIINGDWGTAWNAIKGVGEAIWKGLSAAGKAIFDSFAQILSNIWSTIKSVASSAWEGLKSTVLGLIDGLVQGAKNAWESMKQGVRDLVDKVTSIFDGIKNIDLWEAGKAILDGFLNGLKSAWSAVTDFVGGIASWIRDHKGPIEYDRKLLIPAGNAIMQGLDRGLQDRFKDVKKSVSGMAGEISNAFSNDNFGLSGTPTIAKNIEASLAMPSAQLEAKDSQTVSEIAILRASMEKILTAILEKPSDTYLDADKISMSVYQRQGAIYAREGI*	hallmark_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0003	shell	direct	high	2411	1.0	GCA_011714895.1_01284
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	4301	4684	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	4302	4685	GCA_011714895_1_29_4	GCA_011714895_1_29_4	-	17230	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MNLDEDALICDLAETYQIYDYKQLPLNEVAVFAYGLRDDSRIKQIMSDQIVSLEITLLANIVDRLSISLWLQTKDGQKGVNRPASIAEMLTKNNKEERDERDYLVFESGEDFENYRKALLAKTGGEE*	mmseqs_cdd	nonviral_gene	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0004	shell	direct	high	383	0.997	GCA_011714895.1_01285
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	4699	4974	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	4700	4975	GCA_011714895_1_29_5	GCA_011714895_1_29_5	-	17230	.	.	hypothetical protein	MSKTFKGETKLGFKFEISERRLNNYELLELIGEVDEGQGQVFPKVVKLLFGDEQAKAFKDHLREEDGIVPNDKMADEIKSVFESVNGLKKS*	.	hypothetical_protein	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0005	shell	direct	high	275	0.996	GCA_011714895.1_01286
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	4980	5537	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	4981	5538	GCA_011714895_1_29_6	GCA_011714895_1_29_6	-	17230	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MTTASASNVTAAKPKIGGAVSTAPAGTDIPTNAKTTLNPAFKTLGYISEEGLTNENSPESEEVKAWGGQTVLSSQTEKKDTFKYKLIEGLNIEVLKEVYGPDNVSGTLETGITVTANGKELPEHRLVIDTLLKNGCVKRVVIPSGKVSKIGEINYKDGEPIGYDLTITALPDNSENTHYEYIQGA*	hallmark_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0006	shell	direct	high	557	0.998	GCA_011714895.1_01287
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	5604	5939	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	5605	5940	GCA_011714895_1_29_7	GCA_011714895_1_29_7	-	17230	.	PDB:2LFP_A	tail-completion-protein	MIELVIKKFLDGQLDVPSFFEHKPNMPESYVILEKTGSGGSDYVHSATFAFQSYAPSLQKAAELNEKVKKVVEDLITVNEVSGVHHNSDYNFTDTETKQYRYQAVYDINYF*	hallmark_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0007	shell	direct	high	335	0.997	GCA_011714895.1_01288
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	5936	6172	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	5937	6173	GCA_011714895_1_29_8	GCA_011714895_1_29_8	-	17230	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MSNMKFQLNSAGVSALLRSSEMQGILREKGQGIAERAGEGFELTVSPGQKRANAKISTTDIKSMARNKKHNILLKAMR*	hallmark_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0008	shell	direct	high	236	0.996	GCA_011714895.1_01289
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	6165	6503	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	6166	6504	GCA_011714895_1_29_9	GCA_011714895_1_29_9	-	17230	.	PFAM:PF10665.8	Minor-capsid-protein	MTYLKGIPVILVDKVEIGNDDFGHPIHRDVEIEVQNVLVAPTSSEDVINQMNLTGKKAEYTLGIPKGDTNKWENREVKFFGRKWRTIGIPQEGIESMIPLSWNRKVMVEVYE*	hallmark_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0009	shell	direct	high	338	0.997	GCA_011714895.1_01290
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	6448	6888	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	6449	6889	GCA_011714895_1_29_10	GCA_011714895_1_29_10	-	17230	.	PFAM:PF09355.9	head-to-tail-adaptor	MGNFAKIEDLELLWRSLKFDERARAEALLEVVSNSLRVEAEKVGKDLDDMVAESVSFASVAKSVTVDIVARTLMTSTDHEPMTQVAESALGYSFSGSYLVPGGGLFIKDTELKRLGLKKKQRYGAIEIYDLPKRNPCHFSGQGRNW*	hallmark_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0010	shell	direct	high	440	0.998	GCA_011714895.1_01291
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	6892	7104	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	6893	7105	GCA_011714895_1_29_11	GCA_011714895_1_29_11	-	17230	.	cd12935	LEM-like domain of lamina-associated polypeptide 2 (LAP2) and similar proteins. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and postmitotic reassembly. Some of the LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are nonmembrane nuclear polypeptides. All LAP2 isoforms contain an N-terminal lamina-associated polypeptide-Emerin-MAN1 (LEM)-domain that is connected to a highly divergent LEM-like domain by an unstructured linker. Both LEM and LEM-like domains share the same structural fold, mainly composed of two large parallel alpha helices. However, their biochemical nature of the solvent-accessible residues is completely different, which indicates the two domains may target different protein surfaces. The LEM domain is responsible for the interaction with the nonspecific DNA binding protein barrier-to-autointegration factor (BAF), and the LEM-like domain is involved in chromosome binding. The family also includes the yeast helix-extension-helix domain-containing proteins, Heh1p (formerly called Src1p) and Heh2p, and their uncharacterized homologs found mainly in fungi and several in bacteria. Heh1p and Heh2p are inner nuclear membrane proteins that might interact with nuclear pore complexes (NPCs). Heh1p is involved in mitosis. It functions at the interface between subtelomeric gene expression and transcription export (TREX)-dependent messenger RNA export through NPCs. The function of Heh2p remains ill-defined. Both Heh1p and Heh2p contain a LEM-like domain (also termed HeH domain), but lack a LEM domain.	MALYRDTKTGVIISAESILGGDWVPVEKQVIEEEHLTVVELKSSLDELGIHYEKNAKKSELLSLYKSHKG*	mmseqs_cdd	nonviral_gene	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0011	shell	direct	high	212	0.995	GCA_011714895.1_01292
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	7110	8009	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	7111	8010	GCA_011714895_1_29_12	GCA_011714895_1_29_12	-	17230	.	PDB:3JB5_B	Major-Capsid-protein	MADNAMKAGTLFKPELVTELISKVQGKSVLAKLSAQTPIPFNGVEQFIFNLEGNAQIVGEGEQKLGNKAKLTSKIIKPLKFVYQARITDEFKYASEEKQMNFLSAYMDGFAKKIAEAFDLAALHGLEPKTMTDASFRATNSFDGVISGSVVTYDEAKIDENLEDAVQQVIARGCEVTGIALSPIAGQALGKLKDADKRPVYPEFRFGQNPDSFYGMKSDINKNLTVTGDSAETDHAIVGDFQNRFKWGYAENIPMEIIEYGDPDGAGRDLKAYNEICLRAEAFIGWGILDEDAFARVKA*	hallmark_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0012	shell	direct	high	899	0.999	GCA_011714895.1_01293
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	8015	8485	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	8016	8486	GCA_011714895_1_29_13	GCA_011714895_1_29_13	-	17230	.	PDB:6B0X_d	Major-Capsid-protein	MKMSEFKTIETQEELDNIVKERIRREREKFGDYDDLKKRVSELESENGALKATVEETKQTIAESDAQITELQGQVSNYETASLRTRIALQNGLPYDLADRLQGADEEALKADAERLAGFMRPATPQAPLRDTEPPIGDDKTVQMKQMLRELQPKGE*	hallmark_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0013	shell	direct	moderate	465	0.987	GCA_011714895.1_01294
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	8562	9974	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	8563	9975	GCA_011714895_1_29_14	GCA_011714895_1_29_14	-	17230	.	PFAM:PF03354.14	Large-Terminase	MARKKLGNQNPTQSVILKYVKKNSKAKEAVEIYERTGLSCYAWQVNLLTSIMAVDKNGLWVHQKFGYSIPRRNGKSELLYLFELWGLHNGLNILHTAHRISTSHSSFEKVKRYLEKMGYVDGEHFSSIRAKGQERIELFDGGGIVQFRTRTSNGGLGEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPVSNGTVFTNYRKTCLFGRGKYSGWAEWSVSEEKEIDDVEAWYNSNPSMGCHLNERKIEAELGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCVDSMPDLSGKLFVGVKYGQDGANVALSIAVRTVDERIFVETIDCQSVRNGNDWILDFVKRADVATIVVDGASGQKILDEELKKERMKSVILPTVKEIIVANSMWEQGIYQKTLCHAGQPSLKKITTNCEKRNIGSNGGFGYRSHFADMDISLMDSALLAHWACVTTKPKKKQKISY*	hallmark_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0014	shell	direct	high	1412	0.999	GCA_011714895.1_01295
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	10201	10428	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	10202	10429	GCA_011714895_1_29_15	GCA_011714895_1_29_15	-	17230	.	.	hypothetical protein	MLKFNLIEVVNGFYHYEVFPEGDVSRREIFEFNPSTRELKRNDPPRYGFDYVSKCIINLKNEDGSLKESGQVAWY*	.	hypothetical_protein	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0015	shell	direct	high	227	0.996	GCA_011714895.1_01296
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	10415	11650	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	10416	11651	GCA_011714895_1_29_16	GCA_011714895_1_29_16	-	17230	.	PFAM:PF06152.10	minor-head-protein	MVEDIVPSLLKKIKSEFEGARLDSEVLKDLLSKLHHSKASYLDANQYAIEIGEMLSKALGASLTNETLPDGKMYYNIAQRVLTDVLGRNHELVSDYTEQIQKNLNSEAKIGLTAQVPELNQDRIDGLVNRLASEESFDDVKWLLDDPIVNFSQSIVDDSIRKNAEFHHKVGLSPKIVRRVVGHPCKWCKSLEGSYNYPEVPKDIYRRHGNCRCTVDYHPGNGKKQNVHTKRWAESQKSAKIEVLKGVGLPVQSGARNYFRDESNDDILPKDFIKAEKHAYLTYDKIKNSNQELEKRKIYSNIGKFKEMKDFTKEDVDIAFNHVFNDIHILKDGESLFHPEVNMAESWERLITGKDIQSHDLILLKHERLEHDYMYVRGNMDYDTAHAKTDETYNYGNALTRYLERKNNVKI*	phrogs_hmm	hypothetical_protein	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0016	cloud	direct	high	1235	0.999	GCA_011714895.1_01297
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	11604	12908	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	11605	12909	GCA_011714895_1_29_17	GCA_011714895_1_29_17	-	17230	.	PDB:2JES_G	Portal-Protein	MTLKGMGYLRKKLANYKMGVDTRYNQYAMQHNEIDVGITIPPQIRQQYRAVLGWAAKGVDSLAERLVFREFANDDFGANEIFAQNNPDVFFDSAILSALIGSCCFVYISQGDDDDASRLQVIEASNATGVLDPITGLLTEGYAVLKRDDNGYAVLEAYFTSDVTWFYPKDGKPFAIGNPTGVPLLVPVIHRPDAVRPFGRSRITRAGMYYQRYAKRTLERSDVTAEFYSFPQKYVLGLSQDAEAIDTWKATVSSLLTFTKDDEGDKPNVGQFTTSSMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGSGLLNVAYVATCLRDEFPYLRKQFNKTVVKWEPLFEADANMLTLIGDGVIKLNQAVPGYMDAETIRDLTGIKGSDKPAPVVKEGADGGGYRSEPAQENQV*	hallmark_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0017	shell	direct	high	1304	0.999	GCA_011714895.1_01298
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	13100	13444	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	13101	13445	GCA_011714895_1_29_18	GCA_011714895_1_29_18	-	17230	.	pfam01844	HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	MNTNPLRADRSGPHRVAFEKNKKIILKTRNTCGICGQPVDKDLRYPHPLSPVIDHIVPVNKNGHPSDIANLQLAHWQCNRQKSDKLYADEKTNGTKVIGNRNLPQSTDWFKYKS*	mmseqs_cdd	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0018	shell	direct	high	344	0.997	GCA_011714895.1_01299
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	13679	14245	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	13680	14246	GCA_011714895_1_29_19	GCA_011714895_1_29_19	-	17230	.	CDD:cd01192	site-specific-tyrosine-recombinase	MKKVEPIRDLDDIERIKDYLKNKSDRNYVLFMFGIYSGLRVSDIVPLQVKQVIADRIELKEKKTGKIRYFPISPPLRKEINRYIKDNQLAEYDYLFPSKKKKRTDGVRITHIGRVAVYQILQDAAKYVGLNHIGTHSMRKTFGYHHYKKNSNVAILQKIFNHSTPDITLGYIGYSQDELDQSILSFDY*	common_virus_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0019	shell	direct	high	566	0.998	GCA_011714895.1_01300
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	14535	14963	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	14536	14964	GCA_011714895_1_29_20	GCA_011714895_1_29_20	-	17230	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQIELLDIIDEKKTRKEAIKVLKKYSRLRRIAGEEYAPKITISYSLEPKSSSGQTSKQVESMVLRRVSAQQDLELIAKAINNLSDMEYTRILIERYCRKKRREDYSIYSELGYSSSEYYRILNKALLEFAESYQASNLLVYK*	mmseqs_cdd	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0020	persistent	direct	high	428	0.998	GCA_011714895.1_01301
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	15034	15264	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	15035	15265	GCA_011714895_1_29_21	GCA_011714895_1_29_21	-	17230	.	PDB:2FJR_A	Repressor-protein-CI	MKDKLNPRQASRFAFLLKQKRKERKLSQEKLAAKLGYSRYLIAKWEKEESVPNIYNVEDICTYFAFPADIILGSRA*	common_virus_hmm	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0021	shell	direct	high	230	0.996	GCA_011714895.1_01302
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	15254	15433	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	15255	15434	GCA_011714895_1_29_22	GCA_011714895_1_29_22	-	17230	.	PFAM:PF04936.11	host-nuclease-inhibitor	MSEYALYDGDTFITMGTLAEISKETGIAERMLKYYTFASTQKRHPNGRAVIKIEVDDEG*	phrogs_hmm	hypothetical_protein	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0022	shell	direct	high	179	0.994	GCA_011714895.1_01303
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	15426	15947	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	15427	15948	GCA_011714895_1_29_23	GCA_011714895_1_29_23	-	17230	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MIPKFRAWDRLRKEMNYKVMVGNCDTDDENWTCPIIWIEDRKKWLHFDDYECIMQSTGLKDKNGKEVFVGDIIKCTRGCPHEVYLEKEYGGTFIGGMPAVYLKGLGEGYAWTEDEEVIGNVYENREFFGGNQMNPEIIDNINKPSHYQGANGLEDLKKARKNLDWLIEEMEHE*	mmseqs_cdd	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0023	cloud	direct	high	521	0.998	GCA_011714895.1_01304
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	15944	16204	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	15945	16205	GCA_011714895_1_29_24	GCA_011714895_1_29_24	-	17230	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILLSAGLNIWQMDRIRDLEEKKPMVIYKADNAGAEIFGKVVEKGRHGKLYTLTIRDYGVFVVTKDVYEKVKVGDEVML*	mmseqs_cdd	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0024	persistent	direct	high	260	0.996	GCA_011714895.1_01305
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	16201	16482	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	16202	16483	GCA_011714895_1_29_25	GCA_011714895_1_29_25	-	17230	.	.	hypothetical protein	MEEMKREFAGKLYRKTCEIAEFYEEQMDSEDEDEVFDIEECLVELCQLVFDEMIFCQAAVSRTYFATLPTDNLYIMSEARKELPFKPQQEVID*	.	hypothetical_protein	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0025	cloud	direct	high	281	0.996	GCA_011714895.1_01306
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	16482	17024	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	16483	17025	GCA_011714895_1_29_26	GCA_011714895_1_29_26	-	17230	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNKQELINVPRILFPIGTEILIKGKIVGLKVLADRFVENIVKLDYGEQIIAPNDAIYVKDEPQPVKVPQFVAEFITEQKKLGHTLSYSIDASMSDIVAEWYWDNSELFALAWIFGYEVEEEKRYTVVMKETKQPLYYNAGEKKLFFSLGGIATNFTRKQLEEAGFCWVFNCPGIEIEEVE*	mmseqs_cdd	common_virus	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0026	shell	direct	high	542	0.998	GCA_011714895.1_01307
GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote	cenote	CDS	17026	17229	GCA_011714895.1	RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895.1_RXXT01000036.1	GCA_011714895.1|RXXT01000036.1	GCA_011714895_1_29	GCA_011714895_1_29@C0	17027	17230	GCA_011714895_1_29_27	GCA_011714895_1_29_27	-	17230	.	.	hypothetical protein	YFWEMAEDGMTFMGAMECIFADEKPTDYDLGATKGWLPKSKEFDDWVGYSQSIAQVVIAVYLIYGGN*	.	hypothetical_protein	C0	17231.0	0	17231	GCA_011714895.1|RXXT01000036.1@region_1_17231@tool_cenote_CDS_0027	shell	direct	moderate	177	0.868	GCA_011714895.1_01308
GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote	cenote	CDS	1	3503	GCA_011714895.1	RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895.1_RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895_1_43	GCA_011714895_1_43	1	3504	GCA_011714895_1_43_1	GCA_011714895_1_43_1	+	7902	.	PDB:3GUD_A	Neck-appendage-protein	TDAIELAKAKAEEVKQEVSDTINQRFNSFHDEPLRESRRKAEEALRQAGASSSLAQEAKRIGLDSVARLEAFKSQTRSAQTALSGDLNLLKQTVTNDISSKQRQLKTDISKQVQALGQIKNDLAGVRSSQARYEETTKGRLTALTNRMEGKANKSEVRQTAETLTSQIDRIQEESSTRISTMTSRFNQRADALDAGVRRLTEGLRTKADISSLNVTAENIRQSVRRLERDTQSQLNQKLSTAEFEVQAGSIRQEILNATKDKADKTLVVAEAGKLREEFSNMQVGGRNYYRDSEKIQQSPFSFGFVFDNLDPYLSKSDIGTTWTLSFDCKLDEVDGSFPFHMMHNGGNGFGIEGQTKSTATREWQRFRLTGPVFFKEDAPSESKLQMILFNSDLGYGGTLFIRRIKLEKGTLATDWSPALEDTNGLITQAKASFERTAQELRTDLSAVQAYVTQDGQRQESLQRYTREESARQARAVREQISRDYVGKSSYQEDVEGIHRRIEGVKTSANREITSQIASYRQSADGTFRDISSRITTYKQDMTRNIANLSHQLAGKVETTDFQRVRESSQLYERILGNTENGIADKVARMAMTNQLFQVEVGKYSVSGPNLIKNSDFKNDTNKWVSTQNLGRLVKHSFYHNGQKDLMRLSNATKNKNFLSSHRFNLERNTDYVLNFRGFNNSALASYDVYILGRRAGESDGFTIFKKVVSSKKLSTSRCEDVSVTFNSGEMDNAYIRFENNGSSSGTADLYITEVDLYKGYKPRTWQPHPEDAVADANKKLEATQTKMTQLAGSWLVQNINSAGDLISGINLGANGHNRLSGKLTHITGETLIDRAVIKSAMVDKLKTANFESGSVTTAVLAAEAVTADKVKFDHAFIRKLIANDAFIGELTSKRIFATKIESVVNRSTFLEAYQGQIGGFTIGRFAQGRGRWISGVNQFSVGMGNGEGGSYNGENTAFWANWGYSWNSPGPNAWYVTTLGNMHCRNGANFHGRVDFSDRSRVNFYSQPSFSNGAVINGSLRVSGRITYSGGEWLYSPIYNKLWKDTSQGGTWLYLNRQGNGGSDWIEMNKRISDRRYKSNIQDSQVSGLDVIEKLKTYSYRKEYDGQIEDISCGIMAQDVQKYAPEAFYENPDGAYSYRTFELVPYLIKAIQELNQKIEKMENRHG*	hallmark_hmm	common_virus	NaN	.	0	7902	GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote_CDS_0001	shell	direct	moderate	3371	0.962	GCA_011714895.1_01595
GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote	cenote	CDS	3496	3702	GCA_011714895.1	RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895.1_RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895_1_43	GCA_011714895_1_43	3497	3703	GCA_011714895_1_43_2	GCA_011714895_1_43_2	+	7902	.	.	hypothetical protein	MDNHTIDKLVAESLVDRLADIELNYAHLNVHHRLALAELQAFKAVLEYDPALKELFDETQAKMKGNKE*	.	hypothetical_protein	NaN	.	0	7902	GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote_CDS_0002	shell	direct	high	206	0.995	GCA_011714895.1_01596
GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote	cenote	CDS	3699	4232	GCA_011714895.1	RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895.1_RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895_1_43	GCA_011714895_1_43	3700	4233	GCA_011714895_1_43_3	GCA_011714895_1_43_3	+	7902	.	PF07104.11	Protein of unknown function (DUF1366)	MNYEVAINPYLKGGENVTVVAIKMENKGRYSYEQCELPGDHTQDSEDALIQAVLELVRTELDPTSAIVKNQEQLAKTTEALERANQLMDGMQKVNLQNAQDIEDILARLEELEAQGESDQEETDEDTPQVTDTENQAEEAQPTPAVEDKKESEKEDDISETTNQESPSEDNGGSSNE*	hhsuite_tools	hypothetical_protein	NaN	.	0	7902	GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote_CDS_0003	persistent	direct	high	533	0.998	GCA_011714895.1_01597
GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote	cenote	CDS	4225	4377	GCA_011714895.1	RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895.1_RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895_1_43	GCA_011714895_1_43	4226	4378	GCA_011714895_1_43_4	GCA_011714895_1_43_4	+	7902	.	.	hypothetical protein	MSKITLDQAKIDMYINLLERGAVDFSWVHKRWKDRVRKELKRRGLSHLAN*	.	hypothetical_protein	NaN	.	0	7902	GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote_CDS_0004	persistent	direct	high	152	0.993	GCA_011714895.1_01598
GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote	cenote	CDS	4388	4666	GCA_011714895.1	RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895.1_RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895_1_43	GCA_011714895_1_43	4389	4667	GCA_011714895_1_43_5	GCA_011714895_1_43_5	+	7902	.	PFAM:PF04531.12	holin	MTEIEHLLIRFLFSLIPVVVLYFSMKDRATKQENRMTAIEKDIENLREFRMSANKRLDNHDEQNKAILVLAEQVKSLGEDVRELKTLIQSKQ*	phrogs_hmm	hypothetical_protein	NaN	.	0	7902	GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote_CDS_0005	persistent	direct	high	278	0.996	GCA_011714895.1_01599
GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote	cenote	CDS	4682	5158	GCA_011714895.1	RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895.1_RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895_1_43	GCA_011714895_1_43	4683	5159	GCA_011714895_1_43_6	GCA_011714895_1_43_6	+	7902	.	PFAM:PF14606.5	neck-protein	MVCNLNMTNLRQIDGGHLIKQGDLASTFGFALLDEDYQVISSLEGEEALISLTKEGYQWKKQVTVTGQGVSFHLDAILPIGSYRLEITAGGYVFPSDKSVHIKIVASDKELVTEEVHALKELDIAKEVEKQLAGRTVGESPVGQELPDLLFYYNLGKV*	phrogs_hmm	hypothetical_protein	NaN	.	0	7902	GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote_CDS_0006	persistent	direct	high	476	0.998	GCA_011714895.1_01600
GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote	cenote	CDS	5165	5485	GCA_011714895.1	RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895.1_RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895_1_43	GCA_011714895_1_43	5166	5486	GCA_011714895_1_43_7	GCA_011714895_1_43_7	+	7902	.	PFAM:PF12789.6	tail-fiber-protein	MDTTKLTAFAQAVGEDNKKVNEELKTKVSTSDMNQAIAQAKSEVKAEILGEGTPENLDTLKEIAEKITSMGQDENSALLGKVTEVSGRVDQIANLDLVATYNAAKA*	phrogs_hmm	hypothetical_protein	NaN	.	0	7902	GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote_CDS_0007	persistent	direct	high	320	0.997	GCA_011714895.1_01601
GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote	cenote	CDS	5482	6273	GCA_011714895.1	RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895.1_RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895_1_43	GCA_011714895_1_43	5483	6274	GCA_011714895_1_43_8	GCA_011714895_1_43_8	+	7902	.	6V8I_BM	Distal Tail Protein, gp58, Tail-Associated	MSAMSNLENLARAIGEDVKAIKEDSELKDREVKKRLDTLESRPKVHPETLVTKAELEEKGYLTSHQDLSTYAQKWELYNDIPIKARISALENRPSFDTLTPTQRDSLKGDNGHSLNASVRIEGSYKNGSTSRLNLFADVFYDGEAVTSGYTLDYYYRGFGYTNWRSLRNQTPDSAGKFGTWSASQRSGGWFEVRIEVNYRGLRASAFTHLDNVNDGEQGRSGVPGQNIVNQNGSQALNYWAGTQEQYDAITTKDPHTIYDIFK*	hhsuite_tools	hypothetical_protein	NaN	.	0	7902	GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote_CDS_0008	persistent	direct	high	791	0.999	GCA_011714895.1_01602
GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote	cenote	CDS	6282	6599	GCA_011714895.1	RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895.1_RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895_1_43	GCA_011714895_1_43	6283	6600	GCA_011714895_1_43_9	GCA_011714895_1_43_9	+	7902	.	.	hypothetical protein	MRDRVRIMLGSREIVKRYIGDRLVWSSGPSLLLEVLNTRMWQYWGGYNIDIKGNDIKVAAIRYVQLNNSRLIRIQADMYNRGVIYLTGTNLREYIGSVNVKFYRE*	.	hypothetical_protein	NaN	.	0	7902	GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote_CDS_0009	shell	direct	high	317	0.997	GCA_011714895.1_01603
GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote	cenote	CDS	6614	6943	GCA_011714895.1	RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895.1_RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895_1_43	GCA_011714895_1_43	6615	6944	GCA_011714895_1_43_10	GCA_011714895_1_43_10	+	7902	.	PFAM:PF09682.9	Phage-holin	MTQFNEFIIAFATGFLAVAVGSIVKMVKDYLLRKGGEKAVIIAEILAKNAVHAVEQVAAETGYKGDEKLEQARDKVRAELTKYKISMTDKDLDTFVESAVKQMNDAWRE*	common_virus_hmm	common_virus	NaN	.	0	7902	GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote_CDS_0010	persistent	direct	high	329	0.997	GCA_011714895.1_01604
GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote	cenote	CDS	6946	7899	GCA_011714895.1	RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895.1_RXXT01000049.1	GCA_011714895.1|RXXT01000049.1	GCA_011714895_1_43	GCA_011714895_1_43	6947	7900	GCA_011714895_1_43_11	GCA_011714895_1_43_11	+	7902	.	COG5263	Glucan-binding domain (YG repeat)  [Carbohydrate transport and metabolism]. 	MDIDTSRLRTGLPQVGYAPYRQVHAHSTGNRNSTVQNEADYHYRKNPELGFFSHVVGNGRVMQVGPVNNGAWDVGGGWNAESYAAVELIESHSTKEEFMADYRLYIELLRNLADEAGLPKTLDTSSLEGIKTHEYCTNNQPDNHSDHVDPYPYLAKWGISREQFKQDIESGLTIETGWKKNDTGYWYVHSDGSYPKDKFEKVNGTWYYFDGSGYMLANRWKKHTDGNWYWFDQSGEMATGWKKIAEKWYYFDTEGAMKTGWVKYKDTWYYLDGKEGAMVSNAFIQSADGTGWYYLKPDGTMADKPEFTVEPDGLITTK	mmseqs_cdd	nonviral_gene	NaN	.	0	7902	GCA_011714895.1|RXXT01000049.1@region_1_7902@tool_cenote_CDS_0011	.	unmatched_CDS	none	0	0	.
GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote	cenote	tRNA	14925	14995	GCA_011714895.1	RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895.1_RXXT01000034.1	GCA_011714895.1|RXXT01000034.1	GCA_011714895_1_27	GCA_011714895_1_27@C0	14926	14996	tRNA-Trp	tRNA-Trp	-	20059	.	tRNAscan-SE score: 59.0	Trp	NA	tRNAscan-SE	.	C0	20060.0	0	20060	GCA_011714895.1|RXXT01000034.1@region_1_20060@tool_cenote_tRNA_0001	.	.	.	.	.	.