core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	11990	12913	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	1	924	GCA_012979035_1_10_8	GCA_012979035_1_10_8	-	83902	.	COG2837	Periplasmic deferrochelatase/peroxidase EfeB [Inorganic ion transport and metabolism]. 	MDFRSQNVTDAPGDNTIFMVWNFTADKNACKSSFERLCGLVINLNKTAKVRFGDANVSCVLGVGHDAWKLLDMPTPLPKELINFKPVIGEKHTAVSTKGDIHIHIRATCTSACFDMATHVKDVLSGVATCVEEVQGFRYWDGRAIIGFVDGTENPQGEDRDIYAKVGDEDAKFKGGSYLFVQKYIHPMSEWNKLPVSEQEKIIGRYKHSDIEMSESEKPSNSHSAAANVGDDKKVVRDNMPFMAGGEVGTYFIAYARTFSTLEMMLESMFIGEPKGNYDRLLDYSTPKTGTLFFAPTFDMLEAYSAD*	mmseqs_cdd	nonviral_gene	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0001	persistent	direct	high	923	0.999	GCA_012979035.1_01757
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	13193	15493	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	1204	3504	GCA_012979035_1_10_9	GCA_012979035_1_10_9	+	83902	.	COG0553	Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]. 	MQKERFAKFENLPELMREYGKFADIITNDDVKADLAAKGVNNFVPPIEKIKVIAQISPEQERYTKELLDRYEVLDKKLPGFESDNYLNITNDAKKASLDMRTINPNLPDFEGSKVNLAVKNVIDEYHRYDDTKGTQIICCDLSTPKLKQKQRAQLEELKQRALRGDEEAEAKLEAKAAEGLRLDDKFSVYEDMKEKLIKQGIPENEIAFIHDYDTADAKGELFAKVNSGEVRIVFGSTQKIGTGVNIQERVSALHNIDVPWTPAALEQRQGRVERQGNKLLDEKQNFKVKVYDYATKKMLDAMNWEKIEQKRTFIAQIRKGDIAQRSAEDISDDVVDAATMKALASGNPDILKEIELAGKIKELDAEKRRFMQANINAAYKIKSLQSNIDYYPKALEETRADIKAIEPRSEKENFVKIADKEYSFKDRGQAIAQMLKSLPYYDGKEVRLGSYRGFEIVAQRRGGVYAFALENERSYPLASIKLGEITEGLFTRFDNVLKNIPSEISRIEKRAIEDKKELVSLKKNENKGFSKEAELREAIKEHDEIIAKLKQSDANNEVILNANIAPFAALLGFKKDEDSEDGYSFDGTKAVIATLLGLGALKMAKMKFSGDDIKRLALNANNGLKNSLARVLNITKLDKEKRGIYNVTFNEKKSTPIYKDLELIDEAIKYEKGFENSKANKGYGALHIQKHFEPSKDGYVTKQELLNMGDMIRSVEPDIKDGKHVYEYYDKDGIRFRVVIGIKKNGKERVISFYSNRKRRKLGEL*	mmseqs_cdd	common_virus	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0002	shell	direct	high	2300	1.0	GCA_012979035.1_01758
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	15631	17361	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	3642	5372	GCA_012979035_1_10_10	GCA_012979035_1_10_10	+	83902	.	PFAM:PF16510.4	Portal-protein	MLNIDQLKDILEEATQKNAASIAEYRLAKRYYGGKQLPSDVITILEERGQPPIHENILAMLIEKIQGYKDMSRQDTEVIGRQKADRDMALVLGDIIKAISDTLEFSRQKKRNDENLLLGLGVAEVWIKELDASDEWGKKEKAITVSTIPSDMFYIDPYSCEEDASDAKYFIKLMSMDFEDAKVYFGQKANALKLNIISRYRKRVNIYEFWIKEPDSQSQNGYTWNRYIMGDTLVLLRYEKSPFANGMHPFAVCKLKIDDENRWYGFFRNLKPQIDFINFAENRMANMIGSSKILYESDAVDDADTFAKEINIDNAVVRVKNGALADKKIEIVNNQPQISNLSAKVADARATAQRLSGLNDETLGLAVNRLSGSAIEQRNNAGIVSLQGFLSASAAMDKMIFLKAIDLITRYFDAEQVFRIVEKDNAERYFTINEKERDANGDVKIKDGKAVVKNKIKVGMYDISLNLVPHVKTKREDILKHWAEIIKTITPIDPNMIKRLIPLMLDDSDSPIARDVREMMIADDEQASKQASPAEQLQMQNMQLDLQLKQAKIQNLKADALKKIGEGKEEMGRARG*	hallmark_hmm	common_virus	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0003	shell	direct	high	1730	0.999	GCA_012979035.1_01760
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	17568	17705	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	5579	5716	GCA_012979035_1_10_11	GCA_012979035_1_10_11	-	83902	.	.	hypothetical protein	MAKFANIDVVEHKKPSRLDKAIKEVKNGEVETFKNFNDFEKSLNA*	.	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0004	shell	direct	high	137	0.993	GCA_012979035.1_01761
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	17777	18124	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	5788	6135	GCA_012979035_1_10_12	GCA_012979035_1_10_12	-	83902	.	PFAM:PF15919.4	toxin-antitoxin-system-HicB-like	MKKDLNYYLNLPYEIIVKKLTKEEGGGYFARYKDYPYVMGDGESEAEAIADVKEAFKFVIQTDLERGDFIREPETKTIRVNISLPKSLLEAIDKVASNRSAFLANAASRALAGQR*	phrogs_hmm	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0005	shell	direct	high	347	0.997	GCA_012979035.1_01762
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	18121	18348	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	6132	6359	GCA_012979035_1_10_13	GCA_012979035_1_10_13	-	83902	.	PFAM:PF07927.11	toxin	MSKRDKLIQELENNPKNVRFEVLKNLLESDGWEALNNGSSHWQFRKGGERITVPYKRPVKPLYVKNVLKALKDEK*	phrogs_hmm	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0006	shell	direct	high	227	0.996	GCA_012979035.1_01763
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	18422	18712	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	6433	6723	GCA_012979035_1_10_14	GCA_012979035_1_10_14	-	83902	.	.	hypothetical protein	MIGALPLNLTKGRTMKIWNLTKVHYGPNGMMSREQDKGNYASNSIKVILNYINKKYKLKVKGWQTFDRTAYCYTDEDEARTVWNLDLVAEGKLIEP*	.	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0007	shell	direct	moderate	249	0.856	GCA_012979035.1_01764
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	18709	19338	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	6720	7349	GCA_012979035_1_10_15	GCA_012979035_1_10_15	-	83902	.	.	hypothetical protein	MTLYKILNLSGTEFGGERPEYLYMKKREVQKGYDIYGARIYLIPLDKVSEVFAGKSIEQIDAKDIDTDTFEDFDFIKKISKEILVDGDFESDERFLVIEADGLAIHMEVANEDEYMRGFDETIALDDGNGYLHEPKTIGLIEDEIEVEFLDEPIDDATTYWLNENYFKESFGVTVADWELISVDGEKKILAWEEGTHETSKRYMQILDL*	.	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0008	shell	direct	high	629	0.998	GCA_012979035.1_01765
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	19382	19585	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	7393	7596	GCA_012979035_1_10_16	GCA_012979035_1_10_16	-	83902	.	.	hypothetical protein	MKELTKQIALSLEASGYMLRRGVISSKEHKRYYEFVKGSELVLLAFEDMKDGETLPTKLPSRRKVAL*	.	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0009	shell	direct	high	203	0.995	GCA_012979035.1_01766
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	19721	19927	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	7732	7938	GCA_012979035_1_10_17	GCA_012979035_1_10_17	+	83902	.	PFAM:PF10078.8	transcriptional-regulator	MEIGEFEKLLKQAGLTKKEFANLTGMNYNSVVNWGTKNTYAQWVEPFLTAYIKAKKYDELIKSVKSAV*	phrogs_hmm	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0010	shell	direct	high	206	0.995	GCA_012979035.1_01767
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	20113	20568	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	8124	8579	GCA_012979035_1_10_18	GCA_012979035_1_10_18	-	83902	.	.	hypothetical protein	MYPYLKFLLNLSRCDTDFARLCQSPAYKMRLYRRLLCLFRRVEDTTAFVSTRFVKAFFKPALTFLPVTHAGLNSGKSMQAKISLCRSMFHAKTRPKTRLQKLQRLSKLKSVRKFWYKNSQISISKSQKAKRRTVKTASKTQMTAGVACKAS*	.	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0011	.	unmatched_CDS	none	0	0	.
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	20575	20829	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	8586	8840	GCA_012979035_1_10_19	GCA_012979035_1_10_19	+	83902	.	.	hypothetical protein	MAWLSGFLLLGFRLWPSGFVRPPATRSKFAPFDRAYFSLVAGGSKTHGEINLTLTLVHTIVLNFEVLCKSYHGFLVPFLPVYGL*	.	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0012	shell	ambiguous	low	45	0.176	GCA_012979035.1_01768
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	20784	21005	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	8795	9016	GCA_012979035_1_10_20	GCA_012979035_1_10_20	-	83902	.	.	hypothetical protein	MKKLFIFVFIIVLLAPTFALAYGSHSVGGHIRKNGSCVAPHYRTNRDKTKLNNYSTKGNYNPYTGKKGTKNPW*	.	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0013	shell	direct	high	221	0.995	GCA_012979035.1_01768
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	21058	21504	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	9069	9515	GCA_012979035_1_10_21	GCA_012979035_1_10_21	-	83902	.	.	hypothetical protein	MSFRNKLIKKIDLEYDEVFSNDWEISNQGYEDYQRIREKILEKINWVNKEKKVIYHVFLAFFVYFVLFLIIFCGFLELSSTGFVLSFLFAWQKGINRDIDRSSASDQYTAVLLRWLERVDSDFIEKLHAEHVKIKEEVTHFKKSTKTD*	.	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0014	shell	direct	high	446	0.998	GCA_012979035.1_01769
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	21513	21899	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	9524	9910	GCA_012979035_1_10_22	GCA_012979035_1_10_22	-	83902	.	PFAM:PF10078.8	transcriptional-repressor	MKYSEAILAALRREVNAKNNKELSEILGIGYRNFNNWQTRGRIPTGRLYEIAQKLGVDLDILINGNINGGNNIIFRGDGNTIRGAEKIDDEILAEFCELYKQYRTPMVEGELITLIDRLKKIKKAQEE*	phrogs_hmm	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0015	shell	direct	high	386	0.997	GCA_012979035.1_01770
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	22025	22231	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	10036	10242	GCA_012979035_1_10_23	GCA_012979035_1_10_23	+	83902	.	.	hypothetical protein	MRGLMITLDDKRMLMEFGNITNFAKENDLNKDAVYALLKRHGKPTLFQPNSLIKQTYDKLRQMGYVIE*	.	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0016	shell	direct	high	206	0.995	GCA_012979035.1_01771
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	22509	22802	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	10520	10813	GCA_012979035_1_10_24	GCA_012979035_1_10_24	+	83902	.	.	hypothetical protein	MARLLAVPWRIVSDEARILFLHIAKIADDDEDDVCHASDEELASAMGVDSIKKPFEELKKARYMIVDETSEGRSLRLRYDVTLDFLEAAGYHEAVKG*	.	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0017	shell	direct	high	293	0.997	GCA_012979035.1_01772
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	22806	23720	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	10817	11731	GCA_012979035_1_10_25	GCA_012979035_1_10_25	+	83902	.	PFAM:PF06970.10	replication-initiation-O-like	MAKSISKPERLEFDMTLSGRAKFFYSMLVKLSKNDDECCTASNQYLADKCGCSTKTIMRILSELEDGEYIGILYKNINNKSGRKIFTKIDLFLKYQKDIEVENPSDIFDVRMSHEMSDDYPITCNHVNLKENIKRKVEKNSKFDEQILDELKDIKKENPAHFKSKQKSVNQVNIFNVVLPKSVNPQMWADFVAMRKESKHPLTQTAAKAIVNKLSTFEAQGLDCNEILNTSICNSYRGIFAPVKQKVSNVGRGAEEISNYIRSKVMHENFDPVKAMREGIDELVDGRKVAFGSVGGRMRFYFVN*	phrogs_hmm	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0018	shell	direct	high	914	0.999	GCA_012979035.1_01773
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	23925	24332	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	11936	12343	GCA_012979035_1_10_26	GCA_012979035_1_10_26	+	83902	.	.	hypothetical protein	MNLAMDVTNKGDFNTFEMGLLSELISAVPNHRQSELAKMLFCDTDGLNRLRNGVITMPMVTHYVKKTLKREAKDRATIVYEDFRNGADIKLFSDKEMKEYDTLGIGDGFRQKIAERIYHNLASGVLECLDGATNK*	.	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0019	shell	direct	high	407	0.998	GCA_012979035.1_01774
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	24349	24477	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	12360	12488	GCA_012979035_1_10_27	GCA_012979035_1_10_27	+	83902	.	.	hypothetical protein	MQLNEIGEKLNKLLFEVMKNSSMLVTLADAARILDLSYSGGL*	.	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0020	shell	direct	high	128	0.992	GCA_012979035.1_01775
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	24538	24843	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	12549	12854	GCA_012979035_1_10_28	GCA_012979035_1_10_28	+	83902	.	PF12167.8	Arm DNA-binding domain	MVCELRSDKQTKIQALVKSQSSNKQVVSDNKGDEMTNHAYIRGNMVWVDATFEGKRYRVSTNKKADKFNLAWANKHYIEIITRHIVSKKESEKRTRQETAN*	hhsuite_tools	hypothetical_protein	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0021	shell	direct	high	305	0.997	GCA_012979035.1_01776
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	24885	25580	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	12896	13591	GCA_012979035_1_10_29	GCA_012979035_1_10_29	+	83902	.	PDB:1Z19_B	Integrase	MRFLTHKTYVRDFQHWILPDFGDTALKDIRPLALDTWQNKLRQRVSNKRIYNIRSVFSMILKDAVMDELIKRNPFDSVPKLRNEKVEIKPLSLSEVQRVISVADPHFANVLKLAFFTGMRTGEMIALRWDKIDFEKETIRIDQAIRCGMLNPPKTQTSIRIIKMLRHVKEALLNLKQDNDSEWVLPTQNGTMLYEPKTLNRRWKEALKRAGLEYSVFYQTRHTFASLDDSC*	common_virus_hmm	common_virus	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0022	shell	direct	high	695	0.999	GCA_012979035.1_01777
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	26141	28222	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	14152	16233	GCA_012979035_1_10_30	GCA_012979035_1_10_30	-	83902	.	PDB:4KFU_C	Genome-packaging-NTPase	MVYFGIATAAPTADFVGTFGRTIGLANLKFFGYAAYVYPFALIIFAYYVYRDFKDFDLEFSQVLLGILLFFLAFLMFQAMTMSPANSGIVGKFINDALKDVIGMIGTCVVILMIFTISLGLIFRENLIVVLKRAFVIPISAQNSTKIQPIQPRQRQIAKIERQKDKNSVADEETIDAQILACDDENLEQNGGQEAKISMVNGVEILNEVAENKKLLDEIEKGKVEKPKDFVLPPLKFLNDPPKRSHSVNEAEIDQKISDLLDKLRKFKIDGDVVRTYTGPIVTTFEFRPAPHIKVSKILTLQDDLSMALRAQTIRIQAPIPGKDVVGIEVPNQNLETIYLKEILESEIYKNASSPLTMALGKDIVGAPFITDLKKLPHLLIAGTTGSGKSVGINAMLLSLLYRNSPQTLRLMMIDPKMLEFSIYNDIPHLLTPVITQAKQAIIALSNMVAEMERRYTIMSHTRTKNIESYNEKMKAEGGEQFPYIVVIIDELADLMMTSGKDVELYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSRISYRVGQRIDSKVILDQMGAESLLGRGDMLFTPPGSPGIIRLHAPFASEKEIENIVNFLKDQQEVIYDERFLAEDGSNASATGAAINAGELDELYEEAKEIVLSEQKTSISYLQRRLKIGYNKAANIIEQMEKMGVLSPVNAKGQREIL*	hallmark_hmm	common_virus	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0023	persistent	direct	high	2081	1.0	GCA_012979035.1_01780
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	28351	30573	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	16362	18584	GCA_012979035_1_10_31	GCA_012979035_1_10_31	-	83902	.	PRK14692	flagellar hook-associated protein FlgL. 	MRITNQLRFSQTLHDYQNSMAGVNKSYRQMSSGLKIQNPYENASVYNDAMRLDYEAETLSQVVEATSKSVNFSKNTDKSLQEFEKQLENFKTKVVQAASDVHSKTSLEALANELQGIKNHLVNIANTSINGQFLFSGSAVDTKPIDGNGKYQGNRDYMKTSAGAQIELPYNIPGHDLFLGKDNDYSKILTTNVSLTDNTKTDVSENPKYLTAQSKIKNMIGLNYANDSKNVDNQGKYAGSINPDYDFLDSSNINFPDTYFYMQGKKPDGTSFTSKFKMTAGASVESLMEKIGQEFGNTATTKVVDVSINNDGQFNIKDLTKGNQVIDFHMVAATSTATNKNAIAPNNALDGVNTLADLETMASTNPKTVHITEFTKSKFKDKDGNTVNSFDFDRVRFDKKDNKIIGTISQVVRKSGEYATDSTRLSEVAGIDKLYPKEQGKYNIDDRKLTMEIVSRNGTKYKVDIDLGHEEAPAQTAKFTISGTTSAGTPIAAQTFDIWHATEYGQFKTPTKDVTFRQINDIISMAASDNIPTANTYDNYNSAISLSKGAVEVNMNEKGKIELTDKTNAVSTIQVAAYDSTTNSDKFYGDSTGTTAATSQGRGSVFSFSENNAITIDEPSVNIFDDLDKMIEAVRQGYYRSNAENGDPRNTGMQGALERLDHLIDHANKELTKVGSQTKLITSTNERASLMKVNVLTVKNEVIDADYAEAYLNFTQKTLSYQAMLQASAKINQLSLLNYL*	mmseqs_cdd	nonviral_gene	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0024	persistent	direct	high	2222	1.0	GCA_012979035.1_01781
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	CDS	30741	31424	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	18752	19435	GCA_012979035_1_10_32	GCA_012979035_1_10_32	+	83902	.	COG1583	CRISPR/Cas system endoribonuclease Cas6, RAMP superfamily [Defense mechanisms]. 	MLTINAKLPTRNLRVSKALPQLIQGFIYRYLPAEEHAGYRHEKTGKIFKRMNFDFYLSGADLRVRFTSYEPKFEKAVALGVLKDGLNLGKLCFVDTTVAVSEHRTSSDDVVLQGCVACAVQGLLGHKIYLQAQDSRHLEMMKANALQRFETLTEREYGGKFELNLKWQNLKKPFYFYYGNNQMPLIAWQAKWRVQAEPELINLILDAGVGSGCMNYGVGFLEVVIEG*	mmseqs_cdd	nonviral_gene	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_CDS_0025	persistent	direct	high	683	0.999	GCA_012979035.1_01782
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	tRNA	25993	26067	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	14004	14078	tRNA-Gln	tRNA-Gln	-	83902	.	tRNAscan-SE score: 52.9	Gln	NA	tRNAscan-SE	.	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote	cenote	tRNA	25900	25971	GCA_012979035.1	LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035.1_LIXC01000010.1	GCA_012979035.1|LIXC01000010.1	GCA_012979035_1_10	GCA_012979035_1_10@C1	13911	13982	tRNA-Met	tRNA-Met	-	83902	.	tRNAscan-SE score: 74.6	Met	NA	tRNAscan-SE	.	C1	19435	11990	31425	GCA_012979035.1|LIXC01000010.1@region_11991_31425@tool_cenote_tRNA_0001	.	.	.	.	.	.