core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_013276385.1|VMKX01000087.1@region_1_5115@tool_cenote	cenote	CDS	7	402	GCA_013276385.1	VMKX01000087.1	GCA_013276385.1|VMKX01000087.1	GCA_013276385.1_VMKX01000087.1	GCA_013276385.1|VMKX01000087.1	GCA_013276385_1_126	GCA_013276385_1_126	8	403	GCA_013276385_1_126_1	GCA_013276385_1_126_1	-	5115	.	PFAM:PF14606.5	neck-protein	MVCNLNMTNLAQIDGGHLIKQGDLASTFGFALLDEDYQVISSLEGKEALISLTKEGYQWKKQVTVTGQGVSFHLDAILPIGSYRLEITAGGYVFPSDKSVHIKIVASDKELVTEEVHALKELDIAEEVILS*	phrogs_hmm	hypothetical_protein	NaN	.	0	5115	GCA_013276385.1|VMKX01000087.1@region_1_5115@tool_cenote_CDS_0001	persistent	direct	high	395	0.997	GCA_013276385.1_01975
GCA_013276385.1|VMKX01000087.1@region_1_5115@tool_cenote	cenote	CDS	418	696	GCA_013276385.1	VMKX01000087.1	GCA_013276385.1|VMKX01000087.1	GCA_013276385.1_VMKX01000087.1	GCA_013276385.1|VMKX01000087.1	GCA_013276385_1_126	GCA_013276385_1_126	419	697	GCA_013276385_1_126_2	GCA_013276385_1_126_2	-	5115	.	PFAM:PF04531.12	holin	MTEIEHLLIRFLFSLIPVVVLYFSMKDRATKQENRMTAIEKDIENLREFRMSANKRLDNHDEQNKAILVLAEQVKSLGEDVRELKTLIQSKQ*	phrogs_hmm	hypothetical_protein	NaN	.	0	5115	GCA_013276385.1|VMKX01000087.1@region_1_5115@tool_cenote_CDS_0002	persistent	direct	high	278	0.996	GCA_013276385.1_01976
GCA_013276385.1|VMKX01000087.1@region_1_5115@tool_cenote	cenote	CDS	707	859	GCA_013276385.1	VMKX01000087.1	GCA_013276385.1|VMKX01000087.1	GCA_013276385.1_VMKX01000087.1	GCA_013276385.1|VMKX01000087.1	GCA_013276385_1_126	GCA_013276385_1_126	708	860	GCA_013276385_1_126_3	GCA_013276385_1_126_3	-	5115	.	.	hypothetical protein	MSKITLDQAKIDMYINLLERGAVDFSWVHKRWKDRVRKELKRRGLSHLAN*	.	hypothetical_protein	NaN	.	0	5115	GCA_013276385.1|VMKX01000087.1@region_1_5115@tool_cenote_CDS_0003	persistent	direct	high	152	0.993	GCA_013276385.1_01977
GCA_013276385.1|VMKX01000087.1@region_1_5115@tool_cenote	cenote	CDS	852	1385	GCA_013276385.1	VMKX01000087.1	GCA_013276385.1|VMKX01000087.1	GCA_013276385.1_VMKX01000087.1	GCA_013276385.1|VMKX01000087.1	GCA_013276385_1_126	GCA_013276385_1_126	853	1386	GCA_013276385_1_126_4	GCA_013276385_1_126_4	-	5115	.	PF07104.11	Protein of unknown function (DUF1366)	MNYEVAINPYLKGGENVTVVAIKMENKGRYSYEQCELPGDHTQDSEDALIQAVLELVRTELDPTSAIVKNQEQLAKTTEALERANQLMDGMQKVNLQNAQDIEDILARLEELEAQGESDQEETDEDTPQVTDTENQAEEAQPTPAVEDKKESEKEDDISETTNQESPSEDNGGSSNE*	hhsuite_tools	hypothetical_protein	NaN	.	0	5115	GCA_013276385.1|VMKX01000087.1@region_1_5115@tool_cenote_CDS_0004	persistent	direct	high	533	0.998	GCA_013276385.1_01978
GCA_013276385.1|VMKX01000087.1@region_1_5115@tool_cenote	cenote	CDS	1382	1588	GCA_013276385.1	VMKX01000087.1	GCA_013276385.1|VMKX01000087.1	GCA_013276385.1_VMKX01000087.1	GCA_013276385.1|VMKX01000087.1	GCA_013276385_1_126	GCA_013276385_1_126	1383	1589	GCA_013276385_1_126_5	GCA_013276385_1_126_5	-	5115	.	.	hypothetical protein	MDNHTIDKLVAESLVDRLADIELNYAHLNVHHRLALAELQAFKAVLEYDPALKELFDETQAKMKGNKE*	.	hypothetical_protein	NaN	.	0	5115	GCA_013276385.1|VMKX01000087.1@region_1_5115@tool_cenote_CDS_0005	shell	direct	high	206	0.995	GCA_013276385.1_01979
GCA_013276385.1|VMKX01000087.1@region_1_5115@tool_cenote	cenote	CDS	1581	5114	GCA_013276385.1	VMKX01000087.1	GCA_013276385.1|VMKX01000087.1	GCA_013276385.1_VMKX01000087.1	GCA_013276385.1|VMKX01000087.1	GCA_013276385_1_126	GCA_013276385_1_126	1582	5115	GCA_013276385_1_126_6	GCA_013276385_1_126_6	-	5115	.	PDB:3GUD_A	Neck-appendage-protein	FDAEFTKREKAITDAIELAKAKAEEVKQEVSDTINQRFNSFHDEPLRESRRKAEEALRQAGASSSLAQEAKRIGLDSVARLEAFKSQTRSAQTALSGDLNLLKQTVTNDISSKQRQLKTDISKQVQALGQIKNDLAGVRSSQARYEETTKGRLTALTNRMEGKANKSEVRQTAETLTSQIDRIQEESSTRISTMTSRFNQRADALDAGVRRLTEGLRTKADISSLNVTAENIRQSVRRLERDTQSQLNQKLSTAEFEVRAGSIRQEILNATKDKADKTLVVAEAGKLREEFSNMQVGGRNYYRDSEKIQQSRFGFVFDNLDPYLSKSDIGTTWTLSFDYKLDEVDGSFPFHMMHNGGNGFGIEGQTKSTATREWQRFRLTGPVFFKEDAPSESKLQMTLFNSDLGYGGPIFIRRIKLEKGTLATDWSPALEDTNGLITQAKASFERTAQELRTDLSAVQAYVAQDGQRQESLQRYTREESARQARAVREQISRDYVGKSSYQEDVEGIHRRIEGVKTSANREITSQIASYRQSADGTFRDISSRITTYKQDMTRNIANLSHQLAGKVETTDFQRVRESSQLYERILGNTENGIADKVARMAMTNQLFQVEVGKYSVSGPNLIKNSDFKNDTNKWVSTQNLGRLVKHSFYHNGQKDLMRLSNATKNKNFLSSHRFNLERNTDYVLNFRGFNNSALASYDVYILGRRAGESDGFTIFKKVVSSKKLSTSRCEDVSVTFNSGEMDNAYIRFENNGSSSGTADLYITEVDLYKGYKPRTWQPHPEDAVADANKKLEATQTKMTQLAGSWLVQNINSAGDLISGINLGANGHNRFVGKLTHITGETLIDRAVIKSAMVDKLKTANFESGSVTTAVLAAEAVTADKVKFDHAFIRKLIANDAFIGELTSKRIFATKIESVVNRSTFLEAYQGQIGGFTIGRFAQGRGRWISGVNQFSVGMGNGEGGSYNGENTAFWANWGYSWNSPGPNAWYVTTLGNMHCRNGANFHGRVDFSDRSRVNFYSQPSFSNGAVINGSLRVSGRITYSGGEWLYSPIYNKLWKDTSQGGTWLYLNRQGNGGSDWIEMNKRISDRRYKSNIQDSQVSGLDVIEKLKTYSYRKEYDGQIEDISCGIMAQDVQKYAPEAFYENPDGAYSYRTFELVPYLIKAIQELNQKIEKMENRHG*	hallmark_hmm	common_virus	NaN	.	0	5115	GCA_013276385.1|VMKX01000087.1@region_1_5115@tool_cenote_CDS_0006	shell	direct	moderate	3366	0.952	GCA_013276385.1_01980
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	1	1101	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	2	1102	GCA_013276385_1_53_1	GCA_013276385_1_53_1	-	17490	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTEGNRPLNEAYNDEIVHLGNNTYQLTFRFPTSDPKWELLKEETFLTADDLHGEQDFYIFEVEKQQGYIQVYANQVISLLNNYIVSSIEVDRVSGTRVLSAFAGSITRANPFSFFSDIDDRHTLNIKDKNAMEVLAKDKHSILGQWGGDMVRNGYNLRLLKNGGSENESLFMYKKNLSSYQHKTSMKSLKTRITFKTTVKGEGENAVDHDYMVVIDSPLLGNYSQIYEDVVEVNDQDVTDEASLIAYGKQYFRTSMCDMLEDNLEISVVGQSDVAVQMFDVVSIYHEWYGLDVRKKITKYTYSPMAKRLKSIGFGTFQSSLANAIGGIVNDAVLNESRNLHQIFEERLKKEIANADRAFDAEFT	hallmark_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0001	persistent	ambiguous	low	3	0.003	GCA_013276385.1_00556
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	1098	1796	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	1099	1797	GCA_013276385_1_53_2	GCA_013276385_1_53_2	-	17490	.	PDB:2X8K_A	Distal-Tail-Protein	MFYMIINGFNTATIPHCVVTDFGQVEAAKPRVVEDANLYGANGSYRVLDGGYESYERTFSFYIPKLLDVSTIVEKFQPKDNVLEFSYQLGSVFYADFIGATYSPHGMHAWKLELKLSMQPFRYQKNLAPLIFTASGNVNNPGSVYSEPVIEIEGDGDISLTIGRTTMHLTIRRKVTIDCRHKKQNIYNADGAVQNTLRKRGGFFELAVGNNGLVFTGAVRKVTVRPNWRYIL*	hallmark_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0002	persistent	direct	high	698	0.999	GCA_013276385.1_00556
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	1796	5971	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	1797	5972	GCA_013276385_1_53_3	GCA_013276385_1_53_3	-	17490	.	PFAM:PF10145.8	minor-tail-protein	MASGTPLGQMYIELGLDVSKFSPTLTGAKNAVKYFQNNVRSLDSTLKGNEKNASLLQAKYKTLGQAIDSQRKVLDEMKKSFDKLEPGTAKFDKAAADIQRENAKLAVMEGQLRGVEKALQDVGRENSWSGKMDTLSENFAKGGEKLRAMGDAMKPVSAALLAGFTLSTKKAIDFESQMNTTKSLLADTIPTADELNSTTQKLGESSKNWAKQYGISTASINEGMQEIIKKGFDANQTIEAMPAILDAAKASGEDFNTVMNATTNILQQFGLSTQDTERVTNSLTFVANKTAAGFADMGAAMEYVGPVAKNVGMNLEETAAAVGLLSNNGIAGEKAGTALRGALTRLLKPSEQNANAMEKLGFSAEEFRSGAIKLPDILDRIKKNTEGMTDAQKSALIATAFGTEAQTAMNILVDQGGDALRNLANETKGATTYTKDLANELSKSSKNGVERFKSSLEVLQINIGQKLLPLLTPVIDKVNQFIDWLSKAPPAVQSLAVGIGGFLALGYPFLNFLGNGATALSILIKHAGKLEGLLKGGLGLAKLTERAGKLKGLLQGGLGLAKVGSEATVLAEGAGAAASSSSLLSGAIGALTNPIGLLVGGAALLAGGLVYLGHKKDEARIKAEEFGSQLSDTARKELRDFQSKVDDTSTAVANFGTHAGDAEKVSEAFRKLHEEVAAGAEKANQRMEELAKKLGFSDEEIAKMKVKNDQVVSNTDAMANQVSEIYKRHNGDASKFSQEEKEIVLNNQREMIKARIEMMELSGEQQKAALQALNGEIGSLNETQLKHTRDVLKKALDEENQLYKTSKDGLKQLLDAKRIDQETYNKKIQELETNHQQTMEALGTKYYQVMQNLDAKVKARTGQSWNYWEEAKKVLEEYGLSYEVIGQKAAEASQKMGDSHSILAKYTSDMSKETREANDAWSLLVGNIDENNNFVIKSNVKEVIGEATKSAEGWEQLQFIVKNANINSNARVTIAEALVESGKWSTMTLEEKQLIVQNQAGLQAIFDSENHLRIWNSMPAEVKQLLLENTDVMNKAEEASKALYNYDALTPKQKELLATDENFRKAVARSTDTLTTWNATTPFTKDLKLDPTNVLNNGQLSIDKIMAWNLSNPENKSLNATDNTSEAVASAKASVNSPKQEKPIDLLAKDQTAGVRNETSAAINAIKQHNPVDILAKNSTSSTVSEVKSVVNSIQDKTVTISARDNASGVLAGIRSWITRVTGDFFTNVFASRHAHGTNYHPGGLAMVNDQRNSTYKELVTLPDGRSFIPEGRDVLLPLPKGAKVLRADKTKRLMREMGVPKYAAGVGIPSDAKFLREMEEAQAKIVVQTKGDTNSKDSDKVVSEIAILRASMEKILTAILEKPSDTYLDADKISMSVYQRQGAIYAREGM*	hallmark_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0003	shell	direct	high	4175	1.0	GCA_013276385.1_00557
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	6028	6258	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	6029	6259	GCA_013276385_1_53_4	GCA_013276385_1_53_4	-	17490	.	.	hypothetical protein	MSRKEKACRRYWFWFTIFILYLAFGLYCICTNFVDIFGMLLLSPFIFASLPLYAYLFLGMFIWAFMNMAMDDFYKE*	.	hypothetical_protein	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0004	shell	direct	high	230	0.996	GCA_013276385.1_00558
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	6507	6800	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	6508	6801	GCA_013276385_1_53_5	GCA_013276385_1_53_5	-	17490	.	.	hypothetical protein	MAKVQFTIKNDKGEDVLKKSKEITTRDYRDYLVMNESLTSDLSEVEKLDKQLGFIASLFDDVTVEQLLEYTDFAKVISIFTAIYAHLVGDVDPKEKS*	.	hypothetical_protein	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0005	shell	direct	high	293	0.997	GCA_013276385.1_00560
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	6846	7442	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	6847	7443	GCA_013276385_1_53_6	GCA_013276385_1_53_6	-	17490	.	PFAM:PF04630.11	major-tail-protein	MTVKGTALIGLKSVTIRVHDGQTPTVGQNLFTLEGKDNEGATQTARVTGLSSDPVKTYGSNVAYHVSNRGVGDVKVDMGLLDVPLALYTNALGYGDDDGIYYFGADTVAKNVSILIESNTADGEPVYYGFYKGQLSMDAIDFETLKDKANELATTSVNFTATASSDVATKGRYGAIVYGSDAEKLKKLKGQLNITAAG*	hallmark_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0006	shell	direct	high	596	0.998	GCA_013276385.1_00561
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	7459	7839	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	7460	7840	GCA_013276385_1_53_7	GCA_013276385_1_53_7	-	17490	.	PFAM:PF05657.10	tail-component	MIKDKLTELYDALEEDESLSGISIKSFERPESLGDDETSIVIIPVGPPMQTAHGSNTSLAKTFLYQINVESTNRVECKELQGRIEKIMEEQGFYQTEGGLEQWIPDIKRYVDVRTYRGMSALYEKY*	hallmark_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0007	shell	direct	high	380	0.997	GCA_013276385.1_00562
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	7839	8237	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	7840	8238	GCA_013276385_1_53_8	GCA_013276385_1_53_8	-	17490	.	PFAM:PF04883.11	tail-component	MSSGANLKGFDDILRNIEARLGEPVVRRKVNRALKETVEEFEPTFKRAMAVYADTGKTVGAVVHGNVTGTSSGVPMVKLGFKSPRWTLIHLNEFGYAKNGHPRGFGVMRRFFEASKPVFKSKVGMKLKQEFL*	hallmark_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0008	shell	direct	high	398	0.997	GCA_013276385.1_00563
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	8230	8619	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	8231	8620	GCA_013276385_1_53_9	GCA_013276385_1_53_9	-	17490	.	PDB:2KZ4_A	head-closure-knob	MKRSEGPSYRYKKPESQNGDLRTPLTFYTSKIKKGVDGRDVSYEKAFYTMGQTYSPSMKDVEIATGKAMKAKMTLKIRDPLTDYQPENRHFVEVGDIRLVGKKWQIIDVRPDFANRDFLIVLIGGGRDV*	hallmark_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0009	shell	direct	high	389	0.997	GCA_013276385.1_00564
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	8606	8794	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	8607	8795	GCA_013276385_1_53_10	GCA_013276385_1_53_10	-	17490	.	.	hypothetical protein	MIKVLKEFYDLKEGVLRQVGERFEATEERFAELKEHLPDYVELEKSSRSRSSKEVVSVNEEE*	.	hypothetical_protein	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0010	shell	direct	high	188	0.995	GCA_013276385.1_00565
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	8787	9077	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	8788	9078	GCA_013276385_1_53_11	GCA_013276385_1_53_11	-	17490	.	CDD:cd08054	Head-Tail-Connector-Protein	MEIEAKLHSLLDPFKERMRIFHSGEDANLSRMLESSQMVITRLVGSGNIHDHQIRELILERARYVYNDQVEFFYENFKADILALSLDKIEMEDSDD*	hallmark_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0011	shell	direct	high	290	0.997	GCA_013276385.1_00566
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	9091	10206	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	9092	10207	GCA_013276385_1_53_12	GCA_013276385_1_53_12	-	17490	.	PFAM:PF06673.10	Major-Capsid-protein	MMKLGNEFTTARQNFMNAVETGAPMEEQNKLYNEMIEALTDKLQDDAREAARKEIATMNPYDAQLTAEAREFFNNIEKLPPKGIEKLFPQETIDRIFEDMVAARPLLQHIGLRNAGIRLKFLKSSRTGQAVWGKINAEIQGQLKQEFAEEEAIQSKLTAFVVIPKDSEKFGPAWLQSYVSIQITEAFAAALEAGYLNGDGDNKPIGLSRTLTGTAESEKVTYAEKQAQKKPLTFADSATVVKELTEVYKYHSTKADNTTPVAVEGNLVMVVNPVDAWDVKKQYTSLNAQGVYVTAMPYNLILVESVAQASGKVTTFVKGRYDAFVGGGIEFGRFTETYALEDLNLYTAKQFAYGKAHDEKTAAVWTLNIGK*	hallmark_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0012	shell	direct	high	1115	0.999	GCA_013276385.1_00567
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	10225	10947	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	10226	10948	GCA_013276385_1_53_13	GCA_013276385_1_53_13	-	17490	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MTIIQIKGAIVSNDDRWFYDWLDMDATAPKDIVLPTTGEDVEVHINSGGGDVYAGSEIYTALRAYQGHVTVKIVGIAASAASVIAMAGDQVEISPTAQIMIHNVSAGVRGDHKALLHEAGVLEGFNKSIAYAYIDKTGKALDDLLDLMEGETWFDARSAVNHGFADKVMFESQEAPVLVASQTPVIPRDFIEKIRSAMTPDVELLADLVRDRLNNSLPIPEDKKKEDKTAEPVGLGRFPF*	common_virus_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0013	shell	direct	high	722	0.999	GCA_013276385.1_00568
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	10928	12076	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	10929	12077	GCA_013276385_1_53_14	GCA_013276385_1_53_14	-	17490	.	PFAM:PF04860.11	Portal-protein	MGFLNLFKRDAPDVGFDFEELERMLGCLQLKSLAIDKSAEFVARIFAKSEFRYMVENHHVTSDWDYILNVRPNKNESASEFWQKVIYRLLTKNEVLIVLSDDKQLLVADAFTRRRYALYDDTFEMVSVGDYTFQRKFAMSDVIFLQYNNNRLQEYVSDLFSDYEKLHTRLVEALARNNQIRGVLATKANGTFDEDKRKKLQRYADNLFKSFTSKTVAIVPTMDGVEYSELTNTVGTTNLSVEELKKLRRQFDDEVADILGLPTALMHGDMADLSNSQKMFNSYCYESLVKKVGDALNHAMVSSAGYANQKKFVIFGEGGLDKFALAENIDKLISSGAMTRNEVRLELGLEAVPGGDSFLITKNYQGENEIEKGGNEDDNHSD*	hallmark_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0014	shell	direct	high	1148	0.999	GCA_013276385.1_00569
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	12132	13772	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	12133	13773	GCA_013276385_1_53_15	GCA_013276385_1_53_15	-	17490	.	PFAM:PF03354.14	Large-Terminase	MISHPLVDDYIKMAENGEVVVNKERKLLFKIIKEKIYPRDDLYFDNDLIDKFIRFAEKNFFPLAKYQLFLTPFIFLFRKVDEEPHFDEYLYTLARGGGKNGFMSARSSFFISPIYPIRDYDVTITANSEKQGKVSFEEVYETIQRRGLEDHFYLTKMSITGRANNSVFSFRTNNPKTMDSARDGCLEFDEIHQFENDKAVKVQRSGLGKIAHVRTFYNGTNGYVREGFYDKLIEKSMQILNGEVDDFRLFPFICKLDSADEVDDMKNWPKANPMLDESTPYAKRLLARTKADYDDLELEPSGRQEFMTKRMNIPEADLEKDVTTRERLLACLRSPGIDLLGKSCVAGFDYASIRDFASVGLLFKNGDEFIWKQHSFARKAFLKAFKLKAPIQEWADRGLFTIVDGPSIDPRLLVEKLNEWSKFYQIELVCADGFRMDLLKPLLEEAGFEYEFLRNPGAIQSKVAPIIEDGFANERFIFENDNSMIWYTDNTYVKEDKDGNKRFLKKEPVRRKTDGFHALIAALYKRELVHESNVGEFLDMLEDWEF*	hallmark_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0015	shell	direct	high	1640	0.999	GCA_013276385.1_00570
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	13769	14107	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	13770	14108	GCA_013276385_1_53_16	GCA_013276385_1_53_16	-	17490	.	PFAM:PF05119.11	Small-Terminase	MEEYSEKNIKELENQLLSKIGYFSPRKKDAIQYEKVNRYLYLVRLLYELKAKLHEDGLVITVHNGQQRFQKANSLIKEINTTSNQLLAIERSFDFDVENSPVEKATSGSDLL*	hallmark_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0016	shell	direct	high	338	0.997	GCA_013276385.1_00571
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	14226	14522	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	14227	14523	GCA_013276385_1_53_17	GCA_013276385_1_53_17	-	17490	.	PDB:5H0M_A	HNH-endonuclease	MIEVSTREERNQFYNSSEWRTIRRQALKRDHYECVWCRDEGKVTTTNLEVDHIKELEFYPEFALDIDNLRTLCKACHNKRHDRFDKNDRNFRKDEWWG*	common_virus_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0017	.	unmatched_CDS	none	0	0	.
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	14736	15278	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	14737	15279	GCA_013276385_1_53_18	GCA_013276385_1_53_18	-	17490	.	CDD:cd01192	site-specific-tyrosine-recombinase	MNIVEPIRDKDDIQAMKDYLREWNERNYILFLFGINSGLRVGDILKIRVKDVQGWYIKLKEQKTGKKKKIKMTKTLKREVREYIQNKPHHHFLFQSRVGKNKPLDRRTVDWILKVAASECGIENIGTHSMRKTFGYHYYKKTKDIAMLMSLFNHSSPAITLRYIGIRQDQQDKAMSNFGL*	common_virus_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0018	shell	direct	high	542	0.998	GCA_013276385.1_00572
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	15578	16006	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	15579	16007	GCA_013276385_1_53_19	GCA_013276385_1_53_19	-	17490	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQIELLDIIDEKKTRKEAIKVLKKYSRLRRIAGEEYAPKITISYSLEPRSSSGQTSKQVESMVLRRVSAQQDLELIAKAINNLSDMEYTRILIERYCRKKRREDYSIYSELGYSSSEYYRILNKALLEFAESYQASNLLVYK*	mmseqs_cdd	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0019	persistent	direct	high	428	0.998	GCA_013276385.1_00573
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	16077	16307	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	16078	16308	GCA_013276385_1_53_20	GCA_013276385_1_53_20	-	17490	.	PDB:2FJR_A	Repressor-protein-CI	MKDKLNPRQASRFAFLLKQKRKERKLSQEKLAAKLGYSRYLIAQWEKDESVPNIYNVEDICTYFAFPADIILGSRA*	common_virus_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0020	shell	direct	high	230	0.996	GCA_013276385.1_00574
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	16297	16482	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	16298	16483	GCA_013276385_1_53_21	GCA_013276385_1_53_21	-	17490	.	.	hypothetical protein	MNTHCMKATPLLPWGRLRKSAKKSKETGIAERMLKYYTFASTQRRNPNGRAVVKIEVDDEG*	.	hypothetical_protein	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0021	shell	ambiguous	low	12	0.065	GCA_013276385.1_00574
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	16479	16715	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	16480	16716	GCA_013276385_1_53_22	GCA_013276385_1_53_22	-	17490	.	PFAM:PF11753.7	nucelotide-kinase	MNPEIIDNINKPSHYQGANGLEAIDVVHNFVGNLSGASAFFWGNAIKYMLRFQKKNGLEDLKKARKNLDWLIEEMEHE*	common_virus_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0022	shell	direct	high	236	0.996	GCA_013276385.1_00575
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	16712	17134	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	16713	17135	GCA_013276385_1_53_23	GCA_013276385_1_53_23	-	17490	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MTPKFRVWDSVEKKFVEHFFITDNGLICNMEKPTSDSKLLIPIEKSELILMQSTGLKDKNGVEIFEEDVVSRNSGMPSVVKFGKWIYEEDFGYKIKNIGFHLNSSYDDEWFQAMDYEDIRKNYEVIGNIYENPELLEDKE*	mmseqs_cdd	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0023	shell	direct	high	422	0.998	GCA_013276385.1_00576
GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote	cenote	CDS	17131	17487	GCA_013276385.1	VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385.1_VMKX01000017.1	GCA_013276385.1|VMKX01000017.1	GCA_013276385_1_53	GCA_013276385_1_53@C0	17132	17488	GCA_013276385_1_53_24	GCA_013276385_1_53_24	-	17490	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	KLTKDSIGDCAVVIVGLGLLSKVDLDSIFEESKNVRKNDIMTSFAYANTCISNIQTEQHLKLMTLRIKSLTLLIGHLKSISKSLGYDFEECFELAYQEIKDRKGRWIDGSFVKEEDLA*	phrogs_hmm	common_virus	C0	17491.0	0	17491	GCA_013276385.1|VMKX01000017.1@region_1_17491@tool_cenote_CDS_0024	shell	direct	moderate	321	0.899	GCA_013276385.1_00577
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	1	1107	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	2	1108	GCA_013276385_1_6_1	GCA_013276385_1_6_1	-	18071	.	PFAM:PF07902.10	minor-structural-protein	MDALTRRQFDRAMFAKERTLAIRVGDYTSRDIKEASFEYGYIKGDTYKPGGTCAGSGKITFTSIITTFNKLDTLHPEIGLLVGDTYQWVKMGEYFINDIEIDRNRNTTTLELMDGMFKLNREYVTDLHFPAEVREVIQEICLKTGIELANDYFGISAMRYHVEQVPEGKKLSFRDMLSAMTQMIGMSCFFNREGKMEIRDLTESNITINADSYFLHGLTKSEIEYQIAGITCKTDKKPLTVGMKTGRSLELDNVFMTQSALNDLYYNLKNLTYYPYNLNYQGHLLLEVGQWVTIQTNKKETFKVPVLSQSFTFKGGLRGRISADSKAGNDTQYSYEGTITKQIKQQDGIEAKIQAQIEAADAAFDAEFT	common_virus_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	1112	1462	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	1113	1463	GCA_013276385_1_6_2	GCA_013276385_1_6_2	-	18071	.	.	hypothetical protein	MAQLTINGVAVKPPKSFQVGIQDIDGETGRNANGDMVRDRITTKRKLDCEWGMMTQGELSQLLHAVSSEFFEVSYPDPMDGQVTKTFYVGDRTAPSYTFTEKFKPWSGAKFNLVER*	.	hypothetical_protein	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0002	shell	direct	high	350	0.997	GCA_013276385.1_00049
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	1471	4494	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	1472	4495	GCA_013276385_1_6_3	GCA_013276385_1_6_3	-	18071	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MAMIESTEAFKKFANGQSWQQLDYQTQQQIRLMAILEQATAKYGNTLSNSVNGRISLFKSLMKDAALNLGNSMLPIINAIMPVLNSFAMVLKNVTAKLAEFIALMFNKKATVKDGVGGAVGDMGNAMKDAAGGAGDLADAVDDAGDSAGGLADNLGDSAKNAKKAAKELLGLLGFDEINILQKPKDDDAGGSGGGKGGKGKGGGGGPFKDILPEVELTDMDNQFKSIFDGLGDKLKGLFDLFKKGFDAAFRPEGIERIKTALDQIAKTMGEIATDQRVVNAFNRMAEKIAYALGQVTGSIATIGLGIGVFLAESIANGLGRQKERITRALVALFDNIGNIAEAVGNIAQAFSSAFYDVITSTGAVRIGSAIVSTLLSLTSTIVEVGSKLAGSLFKGFEKVVVTSAPKISSVFQSLLDTVAPVFESIERSVNKFGDGLSRVYDEHVVPAINSIANAFNGLIDIIQILWENSWQPFAEFLSGVFGVSIEGISDLLGGGLLATLGLLADAIKLVADGFAVFSDWCKENKEPILALITAWQTINFLSWAEQAGGLAGAFELLSGKVSFIVSGIKNLGLALKALTFDKLVSFGETIYLNALYAKDFVVNSGKTIAQLGKTALELGKSALAWTAHTAKMGLATAAEFAHSVAAGVATAATWAFNAALAVLTSPITLVIAAIAALIAIGVLLYQNWDTVVEFAKTAWQGLCDFISGICQAIGEFFSGLWTKLQEIFEPIGQWFGEKFQQGWGAISNTFSKLGSWFGDRWNESKDALAEANTWLGDKFKSGRDKVNSAFEKVGSWFGDRWNDIKDGVKEADTWFGEKFESAKKKTQNPFQKIGSWFGDRWKNMQDALKEIPNWFKNLFNDAMDNAKNIVKSGIDKLKSFFNFDWSLPKIKLPHFNISGSFSLMPPRIPSFSVDWYARGGVFNSPSIIGVGEAGQEAVMPLERNTGWISILAQKLAERMPANNVPTGYSLPAGDIVIQIAGHEFGRVAIQEINKEHERAGQTLLKI*	hallmark_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0003	shell	direct	high	3018	0.998	GCA_013276385.1_00050
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	4796	5359	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	4797	5360	GCA_013276385_1_6_4	GCA_013276385_1_6_4	-	18071	.	PFAM:PF04582.11	tail-length-tape-measure-protein	MATLDELKVMIDAEIAPFRKKMKEVENQVKGTSDQVKNATAKVREQSNSIGSAFGKLAKFAGFAILGKKLLDVGMYSTQTALEVSAAMNQIKRQMGESSQSFLKWVNDNANAMNMGVGEATNYGAVYSNLFSGFIKDTNKLSAYTAKMLQTSAVVAEGSGRTITDVMERIRSGLLGNTEAIDFCRTA*	phrogs_hmm	hypothetical_protein	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0004	shell	direct	high	563	0.998	GCA_013276385.1_00051
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	5346	5696	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	5347	5697	GCA_013276385_1_6_5	GCA_013276385_1_6_5	-	18071	.	.	hypothetical protein	MFLDIGGKPLDFWDLTVLEIREMIESYNRVKIQERKEKIIDSYRLSQMISNHVSLFLSKDAKVFEFWEYAPELFVEEQQAVEQERQRQALLLHKERMREFAERHNRKRKEEMNGNS*	.	hypothetical_protein	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0005	shell	direct	high	350	0.997	GCA_013276385.1_00052
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	5735	6115	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	5736	6116	GCA_013276385_1_6_6	GCA_013276385_1_6_6	-	18071	.	PFAM:PF12363.7	tail-assembly-chaperone-protein	MALPYSIWKISDEKELKLRLSSHQAAKVEEKIGMNLLKIFMPEAGEEFPLPLLKVVLLLIHGALQKYENGYSLEDVYDLYDEYVDNGGDQTTFMTEVLMPLFEVSGFTPRGSKGKKTSKKKMTVVE*	hallmark_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0006	shell	direct	high	380	0.997	GCA_013276385.1_00053
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	6120	6533	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	6121	6534	GCA_013276385_1_6_7	GCA_013276385_1_6_7	-	18071	.	PFAM:PF16463.4	tail-tube-protein	MLANGITLSYSETKGSYTKLVGLKEVPEFGIEPEKVENTTLEDKVKKYEFGIGDAGELEYKFSYNNSSETAPYRVLRKAADDKKKLYFEQAYPDGTKVNFEGQVSVKLGGGGVNAVIEFTLKIALQSELEFTDGLGG*	hallmark_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0007	shell	direct	high	413	0.998	GCA_013276385.1_00054
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	6536	6904	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	6537	6905	GCA_013276385_1_6_8	GCA_013276385_1_6_8	-	18071	.	PFAM:PF05657.10	tail-component	MINIKPVIYKELQKVADNVTDTYPSDWETFPVVIFLEEQNKPGDWFDDQEQKSSIRYKVDIFDDTSTSELAVKINQIFESLGLRRTDCQDVPDPSHLRHKVMRFEGVVDLHSELVFQFRMEN*	hallmark_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0008	shell	direct	high	368	0.997	GCA_013276385.1_00055
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	6901	7416	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	6902	7417	GCA_013276385_1_6_9	GCA_013276385_1_6_9	-	18071	.	PFAM:PF04883.11	putative-tail-component	MSGLLGADRLIAKCRRLASKKTGEDIVLRAVHNATIKVVQADAKRLAPGNNGELRNSIKTRVKMDGDKAIGEVYTNLHYAPYVEFGTGPKGQASHSGISPEVSVTYRSSPWYVHEDQINVGPYHFQKIGEFYKMYGQPAQPYLYPALRDNQERVSKNISDYVRRKIREQIK*	hallmark_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0009	shell	direct	high	515	0.998	GCA_013276385.1_00056
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	7391	7729	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	7392	7730	GCA_013276385_1_6_10	GCA_013276385_1_6_10	-	18071	.	PDB:2KX4_A	head-closure-knob	MFLKQSRLKPYPMRRFEKTVTEEGVAKEGYVKEAETIRLELWPASSKLQSELYGERVNDILNANANKSATIKVKDGVCIDSQTEVTHRVISKKVYTHHQVLELERVRATRGR*	hallmark_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0010	shell	direct	high	338	0.997	GCA_013276385.1_00057
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	7710	8021	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	7711	8022	GCA_013276385_1_6_11	GCA_013276385_1_6_11	-	18071	.	PFAM:PF05135.12	head-tail-adaptor	MSIELLKKLTGEEDTQLLMLLQTRATNLILSETNRTSLTPALSRLIPEVAIELHNRSGAEGEHSRTEGGIAVVYGENGLSTGLLQRIRMHRLARVAGHVFEAE*	phrogs_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0011	shell	direct	high	311	0.997	GCA_013276385.1_00058
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	8023	8211	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	8024	8212	GCA_013276385_1_6_12	GCA_013276385_1_6_12	-	18071	.	.	hypothetical protein	MKFKIKQDFYDWELNVKRLAGEELEITEERYAELADNFASNGVAISDVLEEILPEPEFLEED*	.	hypothetical_protein	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0012	shell	direct	high	188	0.995	GCA_013276385.1_00059
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	8201	8383	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	8202	8384	GCA_013276385_1_6_13	GCA_013276385_1_6_13	-	18071	.	PFAM:PF09124.9	endonuclease-VII	MSLLLRRHYIQEEQAGQYSDLENKTLEELKNLAKEAGITGAYKLSKAEIVEVLEDLKSEI*	phrogs_hmm	hypothetical_protein	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0013	shell	direct	high	182	0.995	GCA_013276385.1_00060
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	8395	9237	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	8396	9238	GCA_013276385_1_6_14	GCA_013276385_1_6_14	-	18071	.	PDB:4AN5_F	Major-Capsid-protein	MTAGQTKLATMVNPEVMADMVSAKLPKLIKFTPLAYVETALQGQPGNTLTVPAWEYAGDATEVGEGQAISPDKLTTKKTTMTIKKAAKGYEITDEALLSGLGDPLGQATYQLGLAIANKIDDDLVAVAKTATQHITETPTTLAAIDKALEIFEDEEDARYVAIINPKDAIKLKTDVAKEWTKGSELGADMVVSGTFGEVAGVQIVRSKKVDEGKGFIVKVSPSQTQTDDANKYGAFVIMLKRDVAIETDRDILKKTTVITGDEHYGVYLYDPTRVVKFGE*	hallmark_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0014	shell	direct	high	842	0.999	GCA_013276385.1_00061
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	9243	9812	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	9244	9813	GCA_013276385_1_6_15	GCA_013276385_1_6_15	-	18071	.	PDB:6B0X_d	capsid-scaffolding-protein	MNEETQTVETVEEQKVPAEPAQQPQDEKKYTDADVDAIIDKKFAKWKSEQEARENEAKKLAKMNADEKQKYQLDQREQELADREKAIARKELTAEAKAMLSERDLPVELVNVVDLTSAETVSQSVAVLQKSWEQAVQKGVQEKLKGGAPMKQAPVDSDGITKEEFARMGYQSRNELYQKNPELYKKLKG*	hallmark_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0015	shell	direct	high	569	0.998	GCA_013276385.1_00062
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	10102	11598	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	10103	11599	GCA_013276385_1_6_16	GCA_013276385_1_6_16	-	18071	.	PFAM:PF06152.10	minor-capsid-protein	MDKAEKQADQFDKVYQEAKTYLDKEVNKIFDKFQRDYGLSQVDARQVLKNMKDKKNLNELRKVLEARPNDPNIQRLLADLDSPAYSFRMKRLERLSDDLDRMRESIYHSEKTGSDAFYSDLMKDSYYKASFDLQQQTGLAYGFSGLPESEIKHLQSFSWVGDGSTYSTNIWKNTGKLTSSIKDELLMSLMTGRGTRETAQAIAERFDVGQNDARRLVRTESAFFHNQMELLSYEEADIEKYIFVAVLDKRTSHICQEHDNKVYDRDKATPGVNCPPMHPWCRSTTVAYDEDADYSKLKRRARNPETGKTELVPADMTYKEWYSKYVAKDVKNEIQDYKKSDQTVSRYNTQKLFSDVSNAWDEIGKGGLSKEQLVGLLKSEYELGNFSSDITKLIGVSSAYIDVSSLATSLVRHGQQYSLDEFMLIKEAVQKPYLILDNSERVEKSIISYVKIPNKDKVIMEAVMVPRDEMLVIHFNKVGIRQVKKNGKNMLTLYKKEK*	hallmark_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0016	shell	direct	high	1496	0.999	GCA_013276385.1_00064
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	11561	11998	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	11562	11999	GCA_013276385_1_6_17	GCA_013276385_1_6_17	-	18071	.	PDB:5A20_A	Portal-Protein	MGLEMITKTKEANYKRGLRQRIAIFAHYLGMKQIALESHSIVPQFSRGLPKNLLEISQIVNNLEGKVTNRQLISLLPFVEDPDAELEALEEEKKKNMEDMPMFNKDNTKPEDEVEDEESGVLGEEESQSDLPADGQGRKAGRPVR*	hallmark_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0017	shell	direct	high	437	0.998	GCA_013276385.1_00065
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	12228	12761	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	12229	12762	GCA_013276385_1_6_18	GCA_013276385_1_6_18	-	18071	.	PFAM:PF05551.10	homing-endonuclease	MIKDKMHKHLNQVYYSMLARCYDEKHWAYKWYGKRGIGVSDEFSDVAKFRSWAMQNGVEFGLQLDRIDNDKDYSPSNCRWVPEHTNKRNRSDNVKYKGYILRDYLKKLSEENNISFSTLVYRYYRSIKRDDIIVNDETIDDILLNYKKYDLRQFSKGVDMSGKTIVRDEKGRFVTYY*	common_virus_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0018	shell	direct	high	533	0.998	GCA_013276385.1_00066
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	12879	13898	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	12880	13899	GCA_013276385_1_6_19	GCA_013276385_1_6_19	-	18071	.	PDB:5A20_A	Portal-Protein	MYQYLTYPRDGYDEGSLKKDLIYKLITIHSTEGSHLKKLKSYYLGEHAILEHTRRNVNAPNYKTVANHAKDIADTATGYFMGNPIKYNNTADGDIDELLTVFDGAEIDQVDAQNALNMAIYGRAYEYIYAKEGMAELDSTSIDPENTFMVYDDSIERKPLFAVYYYEVKDDTKDTTKYQAEVFTENLHYHMVLRSTDSGTTQNEQVTPHNLGQIPIIEYRNNHFAIGDYEQQISLIDAYNSLMGNRVNDKEQAVESILVLYGTQLADTPEDAKVAMKILSEEGLLELPGDSARAEFLKNTLDESATEILRTALKEDIYTFSHVPNLTDENFAGNTSGVK*	hallmark_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0019	shell	direct	high	1019	0.999	GCA_013276385.1_00067
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	13910	15208	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	13911	15209	GCA_013276385_1_6_20	GCA_013276385_1_6_20	-	18071	.	CDD:COG1783	Large-Terminase	MSQTYQIKQNDIVVDLPKTVGVGYGQFWRSRNLYRVVKGSRGSKKSKTTALNFVVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNESLPEITIKATGQKILFRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVTFNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVCDGEWGVAEGLIYENVTVKEFNKDELLQDSANKLCIGLDFGFTHDPTALCCSLINDTTKEIYVFDEAYKVGLITKAVAKMIKDKGYHRSQIIADSAELRLIEELRSEHGITRIKESRKGKDSIMAGVSKLQGYAIYVHPDCKNIMDEFYSYCYQQDKEGNWLNKPEDKNNHLMDALRYSLQCIEGGKATVRRRSDYGL*	hallmark_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0020	shell	direct	high	1298	0.999	GCA_013276385.1_00068
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	15186	15659	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	15187	15660	GCA_013276385_1_6_21	GCA_013276385_1_6_21	-	18071	.	PFAM:PF03592.15	Terminase-small-subunit	MNERQRRFADEYIISGNAYQSALKAGYSEKYAKARSSELLDNVGISDYIKNRMEELQDEKILTQKQILVMLSEIASGQAKETTVVTTKVAELMTDPVTGKSVKVYNEIPQLVEYPTKNSDRNKALELLGKRHKMWTDKVEADVSGTVVFANESDIPD*	hallmark_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0021	shell	direct	high	473	0.998	GCA_013276385.1_00069
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	16154	16600	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	16155	16601	GCA_013276385_1_6_22	GCA_013276385_1_6_22	-	18071	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MRLLKKVDVQFTKKNVYDVLESYRSYVRMAGAEYLPKITTTYSFEPKTFTGKNTATENMVIEHVDAEAEVLEIERAVNCIMDPYVRQVIAKKYMDMKIQLSDKAIYMDLGYSESEFYRMLSRGALEFAEAYRKGKLIVFRKFLGDICK*	mmseqs_cdd	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0022	shell	direct	high	446	0.998	GCA_013276385.1_00070
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	16729	16944	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	16730	16945	GCA_013276385_1_6_23	GCA_013276385_1_6_23	+	18071	.	PFAM:PF04014.17	transcriptional-regulator	MNTVKTRKVGNSVTVTIPKTLNVPEGQEMFVYKGVDNVIVLAPKIPDPFSGDADLRMEDDFEGVKFLDSEI*	phrogs_hmm	hypothetical_protein	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0023	shell	direct	high	215	0.995	GCA_013276385.1_00071
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	16928	17281	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	16929	17282	GCA_013276385_1_6_24	GCA_013276385_1_6_24	+	18071	.	COG2337	mRNA-degrading endonuclease, toxin component of the MazEF toxin-antitoxin module [Defense mechanisms]. 	MTAKYDYIPEKQDIIWIDFDPSVGREIQKRRPAIVVSRREYSERTGFVAVCPITHGQSRLEEQGLLVPVRSNKVDGSVNPLQLYTFDFRERRAQKITTMDTTSFQKVVQLYNFIFEA*	mmseqs_cdd	nonviral_gene	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0024	shell	direct	high	353	0.997	GCA_013276385.1_00072
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	17302	17715	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	17303	17716	GCA_013276385_1_6_25	GCA_013276385_1_6_25	-	18071	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MIPKFRAWDVLSEKMIDEILMISFVRKEIIGKFSDGSTSVPLKFKDERNGEDVILMQSTGLKDKNGKEIFEGDVLEIEDEGEVLGNAKLTWDNEQAVFMIEAVSVDDIAPFHEILSDESYSYRVVGNVYENPELLEN*	mmseqs_cdd	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0025	cloud	direct	high	413	0.998	GCA_013276385.1_00073
GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote	cenote	CDS	17712	18068	GCA_013276385.1	VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385.1_VMKX01000103.1	GCA_013276385.1|VMKX01000103.1	GCA_013276385_1_6	GCA_013276385_1_6@C0	17713	18069	GCA_013276385_1_6_26	GCA_013276385_1_6_26	-	18071	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	KLTKDSIGDCVVVIVGLALLIKADVHKIFEESGFAESKDVMENLKWLNVNICNFQLRHGSRQKKYCRYNLVRSIGYLKSISKILGYSFEECFELAYQEIKDRKGRWIDGIFVKEEDLG*	phrogs_hmm	common_virus	C0	18072.0	0	18072	GCA_013276385.1|VMKX01000103.1@region_1_18072@tool_cenote_CDS_0026	cloud	direct	moderate	321	0.899	GCA_013276385.1_00074