core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	1	1113	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	2	1114	GCA_013276415_1_106_1	GCA_013276415_1_106_1	-	20369	.	PFAM:PF07902.10	minor-structural-protein	MDALTRRQFDRAMFAKERTLAIRVGDYTSRDIKEASFEYGYIKGDTYKPGGTCAGSGKITFTSIITTFNKLDTLHPEIGLLVGDTYQWVKMGEYFINDIEIDRNRNTTTLELMDGMFKLNREYVTDLHFPAEVREVIQEICLKTGIELANDYFGISAMRYHVEQVPEGKKLSFRDMLSAMTQMIGMSCFFNREGKMEIRDLTESNITINADSYFLHGLTKSEIEYQIAGITCKTDKKPLTVGMKTGRSLELDNVFMTQSALNDLYYNLKNLTYYPYNLNYQGHLLLEVGQWVTIQTNKKETFKVPVLSQSFTFKGGLRGRISADSKAGNDTQYSYEGTITKQIKQQDGIEAKIQAQIEAADAAFDAEFTKR	common_virus_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	1118	1468	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	1119	1469	GCA_013276415_1_106_2	GCA_013276415_1_106_2	-	20369	.	.	hypothetical protein	MAQLTINGVAVKPPKSFQVGIQDIDGETGRNANGDMVRDRITTKRKLDCEWGMMTQGELSQLLHAVSSEFFEVSYPDPMDGQVTKTFYVGDRTAPSYSFTEKFKPWSGAKFNLVER*	.	hypothetical_protein	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0002	shell	direct	high	350	0.997	GCA_013276415.1_01643
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	1477	4503	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	1478	4504	GCA_013276415_1_106_3	GCA_013276415_1_106_3	-	20369	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MAMIESTEAFKKFANGQSWQQLDYQTQQQIRLMAILEQATAKYGDTLSNSVNGRISLFKSLMKDSALNLGNAMLPIINAIMPVLNSFAMVLKNVTAKLAEFIALMFNKKATVKDGVGGAVGDMGNAMKDAAGGAGDLADAVDDAGDSAGGLADNLGDSAKNAKKAAKELLGLLGFDEINILQKPKDDDAGGSGGGGKGGKGKGGGGGPFKDILPEVELTDMDNQFKSIFDGLGDKLKGLFDLFKKGFDAAFGPEGIERIKTALDQIAKTMGEIATDPRVVNAFNRMAEKIAYALGQVTGSIATIGLGIGVFLAESIANGLGRQKERITRALVALFDNIGNIAEAVGNIAQAFSSAFYDVITSTGAVRIGSAIVSTLLSLTSTIVEVGSKLAGSLFKGFEKVVVTSAPKISSVFQSLLDTVAPVFESIERSVNKFGDGLSRVYDEHVVPAINSIANAFNGLIDIIQILWENSWQPFAEFLSGVFGVSIEGISDLLGGGLLATLGLLADAIKLVADGFAVFSDWCKENKEPILALITAWQTINFLSWAEQAGGLAGAFELLSGKVSFIVSGIKNLGLALKALTFDKLVSFGETIYLNALYAKDFVVNSGKLIAELGKTALELGKSALAWGVHAAQMGLAAAAEIAQSIAAGVAAAATWALNGAIAVLTSPITLVIAAIAALIAIGVLLYQNWDTVVEFAKTAWQGLCDFISGICQSIGEFFSGLWTKLQEIFEPIGQWFGEKFQQAWDAISNTFSKLGSWFGDRWNESKDALAEANTWLGDKFKSGRDKVNSAFEKVGSWFGDRWNDIKDGVKEADTWFGEKFESAKKKTQNPFQKIGSWFGDRWKNMQDALKEIPNWFKNLFNDAMDNAKNIVKSGIDKLKSFFNFDWSLPKIKLPHFNISGSFSLMPPRIPSFSVDWYARGGVFNSPSIIGVGEAGQEAVMPLERNTGWISILAQKLAERMPANNVPTGYSLPAGDIVIQIAGHEFGRVAIQEINKEHERAGQTLLKI*	hallmark_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0003	shell	direct	high	3021	0.998	GCA_013276415.1_01644
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	4805	5368	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	4806	5369	GCA_013276415_1_106_4	GCA_013276415_1_106_4	-	20369	.	PFAM:PF04582.11	tail-length-tape-measure-protein	MATLDELKVMIDAEIAPFRKKMKEVENQVKGTSDQVKNATAKIREQSSSIGSAFGKLAKFAGFAILGKKLLDVGMYSTQTALEVSAAMNQIKRQMGESSQSFLKWVNDNANAMNMGVGEATNYGAVYSNLFSGFIKDTNKLSAYTAKMLQTSAVVAEGSGRTITDVMERIRSGLLGNTEAIDFCRTA*	phrogs_hmm	hypothetical_protein	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0004	shell	direct	high	563	0.998	GCA_013276415.1_01645
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	5355	5705	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	5356	5706	GCA_013276415_1_106_5	GCA_013276415_1_106_5	-	20369	.	.	hypothetical protein	MFLDIGGKPLDFWDLTVLEIREMIESYNRVKIQERKEKIIDSYRLSQMISNHVSLLLSKDAKVFEFWEYAPELFVEEQQAVEQERQRQALLLHKERMRDFADRHNRKRKEEMNGNS*	.	hypothetical_protein	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0005	shell	direct	high	350	0.997	GCA_013276415.1_01646
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	5744	6124	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	5745	6125	GCA_013276415_1_106_6	GCA_013276415_1_106_6	-	20369	.	PFAM:PF12363.7	tail-assembly-chaperone-protein	MALPYSIWKISDEKELKLRLSSHQAAKVEEKIGMNLLKIFMPEAGEEFPLPPLKVVLLLIHGALQKYENGYSLEDVYDLYDEYVDNGGDQTTFMTEVLMPLFEVSGFTPRGSKGKKTSKKKMTVVE*	hallmark_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0006	shell	direct	high	380	0.997	GCA_013276415.1_01647
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	6129	6542	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	6130	6543	GCA_013276415_1_106_7	GCA_013276415_1_106_7	-	20369	.	PFAM:PF16463.4	tail-tube-protein	MLANGITLSYSETKGSYTKLVGLKEVPEFGIEPEKVENTTLEDKVKKYEFGIGDAGELEYKFSYNNSSETAPYRVLRKAADDKKKLYFEQAYPDGTKVNFEGQVSVKLGGGGVNAVIEFTLKIALQSELEFTDGLGG*	hallmark_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0007	shell	direct	high	413	0.998	GCA_013276415.1_01648
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	6545	6913	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	6546	6914	GCA_013276415_1_106_8	GCA_013276415_1_106_8	-	20369	.	PFAM:PF05657.10	tail-component	MINIKPVIYKELQKVADNVTDTYPSDWETFPVVIFLEEQNKPGDWFDDQEQKSSIRYKVDIFDDTSTSELAVKINQIFESLGLRRTDCQDVPDPSHLRHKVMRFEGVVDLHSELVFQFRMEN*	hallmark_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0008	shell	direct	high	368	0.997	GCA_013276415.1_01649
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	6910	7425	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	6911	7426	GCA_013276415_1_106_9	GCA_013276415_1_106_9	-	20369	.	PFAM:PF04883.11	putative-tail-component	MSELRGADRLIAKCRRLASKKAGEDIVLRAVYNAAIKVVQADAKRLAPGNNGELRNSIKTRVKMDGDKAIGEVYTNLHYAPYVEFGTGPKGQASHSGISPEVSVSYRSSPWYVHEDQINVGPYHFQKIGEFYKMYGQPAQPYLYPALRDNQERVSKNISDYVRRKIREQIK*	hallmark_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0009	shell	direct	high	515	0.998	GCA_013276415.1_01650
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	7400	7738	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	7401	7739	GCA_013276415_1_106_10	GCA_013276415_1_106_10	-	20369	.	PDB:2KX4_A	head-closure-knob	MFLKQSRLKPYPMRRFEKTVTEEGVAKEGYAKEAETVRLELWPAGSKLQSELYGERVNDILNANANKSATIKVKDGVCIDSPTEVTHRVISKKVYTYHQVLELERVRATRGR*	hallmark_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0010	shell	direct	high	338	0.997	GCA_013276415.1_01651
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	7719	8030	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	7720	8031	GCA_013276415_1_106_11	GCA_013276415_1_106_11	-	20369	.	PFAM:PF05135.12	head-tail-adaptor	MSIELLKKLTGEEDTQLLMLLQTRSTNLILSETNRTSLTPALSLLIPEVAIELHNRSGAEGEHSRTEGGIAVVYGENGLSTGLLQRIRMHRLARVAGHVFEAE*	phrogs_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0011	shell	direct	high	311	0.997	GCA_013276415.1_01652
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	8032	8220	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	8033	8221	GCA_013276415_1_106_12	GCA_013276415_1_106_12	-	20369	.	.	hypothetical protein	MKFKIKQDFYDWELNVKRLAGEELEITEERYAELADNFASNGVAISDVLEEILPEPEFLEED*	.	hypothetical_protein	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0012	shell	direct	high	188	0.995	GCA_013276415.1_01653
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	8210	8392	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	8211	8393	GCA_013276415_1_106_13	GCA_013276415_1_106_13	-	20369	.	PFAM:PF09124.9	endonuclease-VII	MSLLLRRHYIQEEQAGQYSDLENKTLEELKNLAKEAGITGAYKLSKAEIVEVLEDLKSEI*	phrogs_hmm	hypothetical_protein	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0013	shell	direct	high	182	0.995	GCA_013276415.1_01654
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	8404	9246	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	8405	9247	GCA_013276415_1_106_14	GCA_013276415_1_106_14	-	20369	.	PDB:4AN5_F	Major-Capsid-protein	MTAGQTKLATMVNPEVMADMVSAKLPKLIKFTPLAYVETALQGQPGNTLTVPAWEYAGDATEVGEGQAISPDKLTTKKTTMTIKKAAKGYEITDEALLSGLGDPLGQATYQLGLAIANKIDDDLVAVAKTATQHVAETPTTLEAIDKALDIFEDEEDAQYVAIINPKDATKLKTDVAKEWTKGSELGANMVVSGTFGEVAGVQIVRSKKVEEGKGFLVKVSPSQTQTDDANKYGAFVIMLKRDVAIETDRDILKKTTVITGDKHYGVYLYDPTRVVKFGE*	hallmark_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0014	shell	direct	high	842	0.999	GCA_013276415.1_01655
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	9252	9821	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	9253	9822	GCA_013276415_1_106_15	GCA_013276415_1_106_15	-	20369	.	PDB:6B0X_d	capsid-scaffolding-protein	MNEETQTVETVEEQKVPAEPAQQPQDEKKYTDADVDAIIDKKFAKWKSEQEAKENEAKKLAKMNADEKQKYQLDQREQELADREKAIARKELTAEAKAMLSERDLPVELVNVVDLTSAETVSQSVAVLQKSWEQAVQKGVQEKLKGGAPMKQAPVDSDGVTKEEFARMGYQSRNELYQKNPELYKKLKG*	hallmark_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0015	shell	direct	high	569	0.998	GCA_013276415.1_01656
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	9935	10690	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	9936	10691	GCA_013276415_1_106_16	GCA_013276415_1_106_16	-	20369	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MELQIFKNEQFGEVRTTEVNKEIYFNLKDCCQILDIKNSKDVVKRLNSKGVVTTDLLTNGGVQQANFINEANFYKLVFQSRKPEAEKFADWVTSEVLPSIRKHGAYMTDQVAYNITHNKQALADLLLMAGNQLKEKEAVIKNLEAEKAVLSVENTIMKPKADYFDELVDRNLLTSFRETAKQLKIKERKFIDFLMEKKYIYRDKKGKLQPTANKNDGLFEVKETLNEKTQWSGTQTLITPKGRETFRLLFI*	common_virus_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0016	shell	direct	high	755	0.999	GCA_013276415.1_01657
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	10701	10976	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	10702	10977	GCA_013276415_1_106_17	GCA_013276415_1_106_17	-	20369	.	.	hypothetical protein	MAKIELTEEQLTHLGYELADIRRTVEMATNMTETLAWVQLKDETAFKEMSKKFFDTFNEQFGLLHSTLDEIAFILMNSTDKAEILGSKIFN*	.	hypothetical_protein	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0017	shell	direct	high	275	0.996	GCA_013276415.1_01658
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	11093	11269	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	11094	11270	GCA_013276415_1_106_18	GCA_013276415_1_106_18	-	20369	.	PFAM:PF03869.13	transcriptional-repressor	MVAKVGRPKSENPRRNNTRLRMTDEEVAMLEYCAEQTGKTKTEILMLGLEKVYNEIKK*	phrogs_hmm	hypothetical_protein	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0018	cloud	direct	high	176	0.994	GCA_013276415.1_01659
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	11489	12898	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	11490	12899	GCA_013276415_1_106_19	GCA_013276415_1_106_19	-	20369	.	PFAM:PF06152.10	minor-capsid-protein	MDKAEKQADQFDKVYQEAKTYLDKEVNKIFDKFQRDYGLSQVDARQVLKNMKDKKNLNELRKVLEARPNDPNIQRLLADLDSPAYSFRMKRLERLSDDLDRMRESIYHSEKTGSDAFYSDLMKDSYYKATFDLQQQTGLAYGFSGLPESEIKHLQSFSWVGDGSTYSTNIWKNTGKLTSSIKDELLMSLMTGRGTRETAQAIAERFNVGQNDARRLVRTESAFFHNQMELLNYEEADIEKYIFVAVLDKRTSRICQEHDNQVYDRDKAVPGVNCPPMHPWCRSTTVGYDEDADYSNLKRRARNPETGKVEYVPADMTYKEWYSKYVDGNIESIKYAEGTPKTTSDILFEERLPKAAEEKVLSHFDFFNNSRIVLRPERLEHILEGHSDIGDDIEGIVHGVIKKPDMILIDHKNDNSILVLGKSLENSVNVVVRLSNTDFDNSIITAMRVSDKTLKRLLKKNKKIYDKNE*	hallmark_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0019	cloud	direct	high	1409	0.999	GCA_013276415.1_01660
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	12861	13298	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	12862	13299	GCA_013276415_1_106_20	GCA_013276415_1_106_20	-	20369	.	PDB:5A20_A	Portal-Protein	MGLEMITKTKEANYKRGLRQRIAIFAHYLGMKQIALESHSIVPQFSRGLPKNLLEISQIVNNLEGKVTNRQLISLLPFVEDPDAELEALEEEKKKNMEDMPMFNKDNTKPEDEVEDEESGVLGEEESQSDLPADGQGRKAGRPVR*	hallmark_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0020	shell	direct	high	437	0.998	GCA_013276415.1_01661
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	13528	14061	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	13529	14062	GCA_013276415_1_106_21	GCA_013276415_1_106_21	-	20369	.	PFAM:PF05551.10	homing-endonuclease	MIKDKMHKHLNQVYYSMLARCYDEKHWAYKWYGKRGIGVSDEFSDVAKFRSWAMQNGVEFGLQLDRIDNDKDYSPSNCRWVPEHTNKRNRSDNVKYKGYILRDYLKKLSEENNISFSTLVYRYYRSIKRDDIIVNDETIDDILLNYKKYDLRQFSKGVDMSGKTIVRDEKGRFVTYY*	common_virus_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0021	shell	direct	high	533	0.998	GCA_013276415.1_01662
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	14190	15209	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	14191	15210	GCA_013276415_1_106_22	GCA_013276415_1_106_22	-	20369	.	PDB:5A20_A	Portal-Protein	MYQYLTYPRDGYDEGSLKKDLIYKLITIHNTESSHLKKLKSYYLGEHAILEHTRRNVNAPNYKTVANHAKDIADTATGYFMGNPIKYNNTAEGDIDELLTAFDGAEIDQVDAQNALNMAIYGRAYEYIYAKEGLTELDSTSIDPENTFMVYDDSIERKPLFAVYYYEVKDDTKDTTKYQAEVFTENLHYHMVLRSTDSGTTQNEQVTPHNLGQIPIIEYRNNHFAIGDYEQQISLIDAYNSLMGNRVNDKEQAVESILVLYGTQLADTPEDAKVAMKILSEEGLLELPGDSARAEFLKNTLDESATEILRTALKEDIYTFSHVPNLTDENFAGNTSGVK*	hallmark_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0022	shell	direct	high	1019	0.999	GCA_013276415.1_01663
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	15221	16444	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	15222	16445	GCA_013276415_1_106_23	GCA_013276415_1_106_23	-	20369	.	PDB:5OEA_B	Large-Terminase	MTLEQLYTTKQVDILKRSVSSDWYMMINHGAVRAGKTKLDNDLFLMELKRVKKNAEKVGVKNPMYILGAVSSGTLQTNILREISDAYNHDFRFDRHGNFSLFGVYVVTTFTGSIAGLKAIRGMTSFGAYINEATLANKEVFDEILKRCSGFGARIICDTNPDHPKHWLKVNYIDKADGSKIISNHFTIFDNTFLNQRYINNLIATTPSGMFTERGIYGRWVIGEGAVYRDFEESMYVKEIPDEITKIYAGVDWGYEHFGSIVVIGETSGGSAYLLEEHAHQYKEIDFWVDLAKNIKERYGNITFWADSARPEHVARFQREQLRTFNANKAVLSGIEEVAKLMKAGRFFVVSNKVSKFKDEVYQYIWNEKTGEPVKDNDDVLDAVRYAIYSQHSQPKATVRRRSDYGL*	hallmark_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0023	cloud	direct	high	1223	0.999	GCA_013276415.1_01664
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	16434	16892	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	16435	16893	GCA_013276415_1_106_24	GCA_013276415_1_106_24	-	20369	.	.	hypothetical protein	MANEQNLIKNSERTPSERRENAKKAGEASGKARRKKANLKKAFETILQADVANPNVKKQLEDLGFDSTNEMALAMAMMQKAMKGNVRAFEQISKLTTTDVKDSLDKKEQKERIKALELENEKRKITLEGGAKSEDVMSDYFDKLEDTLGNDS*	.	hypothetical_protein	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0024	cloud	direct	high	458	0.998	GCA_013276415.1_01665
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	16921	17205	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	16922	17206	GCA_013276415_1_106_25	GCA_013276415_1_106_25	-	20369	.	PDB:5HFJ_C	Adenine-specific-DNA-methyltransferase	MQDTTPTTIFYEDKPVRNDIHPTMKPLKLIARCVLNSSKKGDRVLDSFNGGGSTLMVCEKSERVYYGMELDPLYVARTIRRWEEETGLAAEKVN*	common_virus_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0025	cloud	direct	high	284	0.996	GCA_013276415.1_01666
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	17223	18176	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	17224	18177	GCA_013276415_1_106_26	GCA_013276415_1_106_26	-	20369	.	PDB:5HFJ_C	Adenine-specific-DNA-methyltransferase	MKIIDKPIEWLRPYEKNPRNNDQAVEAVANSIKEFGFKVPIVATPDGEIINGHTRFKAAKFLKLKTVPVLIADDLTEEQIKAFRLADNKTGELADWDIELLYSELDELTGFDMTMFGFEDIDFSLDDFEEVEKEEGSEVDINQEEKPEVEYGDIYQLGRHRLMCGDSTSAEDMARLINGETIDLYVTDPPYNVAYQGGTDEAMTIMNDSMDDVSFRKFLRDAFAVANNHLKPGGAFYIWHADSEGLNFRAAVKETGWLLKQSIIWVKNAIVLGRQDYQWKHEPCLYGWKDGASHYFVDNRSLATVIEEDEENLKEMT*	common_virus_hmm	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0026	cloud	direct	high	953	0.999	GCA_013276415.1_01667
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	18797	19243	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	18798	19244	GCA_013276415_1_106_27	GCA_013276415_1_106_27	-	20369	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MRLLKSVDVQFTKKNVYDVLESYRSYVRMAGAEYLPKITTTYSFEPKTFTGKNTATENMVIEHVDAEAEVLEIERAVNCIMDPYVRQVIAKKYMDMKIQLSDKAIYMDLGYSESEFYRMLSRGALEFAEAYRKGKLIVFRKFLGDICK*	mmseqs_cdd	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0027	shell	direct	high	446	0.998	GCA_013276415.1_01669
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	19373	19588	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	19374	19589	GCA_013276415_1_106_28	GCA_013276415_1_106_28	+	20369	.	PFAM:PF04014.17	transcriptional-regulator	MNTVKTRKVGNSVTVTIPKTLNVPEGQEMFVYKGVDNVIVLAPKIPDPFNGDADLRMEDDFEGVRFLDSEI*	phrogs_hmm	hypothetical_protein	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0028	shell	direct	high	215	0.995	GCA_013276415.1_01670
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	19572	19925	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	19573	19926	GCA_013276415_1_106_29	GCA_013276415_1_106_29	+	20369	.	COG2337	mRNA-degrading endonuclease, toxin component of the MazEF toxin-antitoxin module [Defense mechanisms]. 	MTAKYDYIPEKQDIIWIDFDPSVGREIQKRRPAIVVSRREYSERTGFVAVCPITHGQSRLEEQGLLVPVRSNKVDGSVNPLQLYTFDFRERKAQKITTMDTTSFQKVVQLYNFIFEA*	mmseqs_cdd	nonviral_gene	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0029	shell	direct	high	353	0.997	GCA_013276415.1_01671
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	CDS	19946	20353	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	19947	20354	GCA_013276415_1_106_30	GCA_013276415_1_106_30	-	20369	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MIPKFRAWDRLRKEMNYKVMVGNCDLSDENWTCPIIWIEEKKDWLHFDDYECIMQSTGLKDKNGKEIFEGDVLEIQDEGEVLGNAKLTWDNEQAVFMIEAISVDDIAPFHEILSDESYSYRVVGNVYENPELLEN*	mmseqs_cdd	common_virus	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_CDS_0030	shell	direct	high	407	0.998	GCA_013276415.1_01672
GCA_013276415.1|VMKZ01000084.1@region_1_3931@tool_cenote	cenote	CDS	1	2438	GCA_013276415.1	VMKZ01000084.1	GCA_013276415.1|VMKZ01000084.1	GCA_013276415.1_VMKZ01000084.1	GCA_013276415.1|VMKZ01000084.1	GCA_013276415_1_126	GCA_013276415_1_126	1	2439	GCA_013276415_1_126_1	GCA_013276415_1_126_1	+	3931	.	PDB:3GUD_A	Neck-appendage-protein	KEFTATREWQRFRLTGPVFFKEDAPSESKLQMTLFNSDLGYGGTIFIRRIKLEKGTLATDWSPALEDTNGLITQAKASFERTAQELRTDLSAVQAYVAQDGQRQESLQRYTREESARQARAVREQISRDYVGKSSYQEDVEGIHRRIEGVKTSANREITSQIASYRQSADGTFRDISSRITTYKQDMTRNIANLSHQLAGKVETTDFQRVRESSQLYERILGNTENGIADKVARMAMTNQLFQVEVGKYSVSGPNLIKNSDFKNDTNKWVSTQNLGRLVKHSFYHNGQKDLMRLSNATKNKNFLSSHRFNLERNTDYVLNFRGFNNSALASYDVYILGRRAGESDGFTIFKKVVSSKKLSTSRCEDVSVTFNSGEMDNAYIRFENNGSSSGTADLYITEVDLYKGYKPRTWQPHPEDAVADANKKLEATQTKMTQLAGSWLVQNINSAGDLISGINLGANGHNRFVGKLTHITGETLIDRAVIKSAMVDKLKTANFESGSVTTAVLAAEAVTADKVKFDHAFIRKLIANDAFIGELTSKRIFATKIESVVNRSTFLEAYQGQIGGFTIGRFAQGRGRWISGVNQFSVGMGNGEGGSYNGENTAFWANWGYSWNSPGPNAWYVTTLGNMHCRNGANFHGRVDFSDRSRVNFYSQPSFSNGAVINGSLRVSGRITYSGGEWLYSPIYNKLWKDTSQGGTWLYLNRQGNGGSDWIEMNKRISDRRYKSNIQDSQVSGLDVIEKLKTYSYRKEYDGQIEDISCGIMAQDVQKYAPEAFYENPDGAYSYRTFELVPYLIKAIQELNQKIEKMENRHG*	hallmark_hmm	common_virus	NaN	.	0	3931	GCA_013276415.1|VMKZ01000084.1@region_1_3931@tool_cenote_CDS_0001	shell	direct	moderate	2345	0.962	GCA_013276415.1_02031
GCA_013276415.1|VMKZ01000084.1@region_1_3931@tool_cenote	cenote	CDS	2431	2637	GCA_013276415.1	VMKZ01000084.1	GCA_013276415.1|VMKZ01000084.1	GCA_013276415.1_VMKZ01000084.1	GCA_013276415.1|VMKZ01000084.1	GCA_013276415_1_126	GCA_013276415_1_126	2432	2638	GCA_013276415_1_126_2	GCA_013276415_1_126_2	+	3931	.	.	hypothetical protein	MDNHTIDKLVAESLVDRLADIELNYAHLNVHHRLALAELQAFKAVLEYDPALKELFDETQAKMKGNKE*	.	hypothetical_protein	NaN	.	0	3931	GCA_013276415.1|VMKZ01000084.1@region_1_3931@tool_cenote_CDS_0002	shell	direct	high	206	0.995	GCA_013276415.1_02032
GCA_013276415.1|VMKZ01000084.1@region_1_3931@tool_cenote	cenote	CDS	2634	3167	GCA_013276415.1	VMKZ01000084.1	GCA_013276415.1|VMKZ01000084.1	GCA_013276415.1_VMKZ01000084.1	GCA_013276415.1|VMKZ01000084.1	GCA_013276415_1_126	GCA_013276415_1_126	2635	3168	GCA_013276415_1_126_3	GCA_013276415_1_126_3	+	3931	.	PF07104.11	Protein of unknown function (DUF1366)	MNYEVAINPYLKGGENVTVVAIKMENKGRYSYEQCELPGDHTQDSEDALIQAVLELVRTELDPTSAIVKNQEQLAKTTEALERANQLMDGMQKVNLQNAQDIEDILARLEELEAQGEPDQGEKEEDTPQVTDTENQAEEAQPTPAVEDKKESEKEDDISETTNQESPSEDNGGSSNE*	hhsuite_tools	hypothetical_protein	NaN	.	0	3931	GCA_013276415.1|VMKZ01000084.1@region_1_3931@tool_cenote_CDS_0003	persistent	direct	high	533	0.998	GCA_013276415.1_02033
GCA_013276415.1|VMKZ01000084.1@region_1_3931@tool_cenote	cenote	CDS	3160	3312	GCA_013276415.1	VMKZ01000084.1	GCA_013276415.1|VMKZ01000084.1	GCA_013276415.1_VMKZ01000084.1	GCA_013276415.1|VMKZ01000084.1	GCA_013276415_1_126	GCA_013276415_1_126	3161	3313	GCA_013276415_1_126_4	GCA_013276415_1_126_4	+	3931	.	.	hypothetical protein	MSKITLDQAKIDMYINLLERGAVDFSWVHKRWKDRVRKELKRRGLSHLAN*	.	hypothetical_protein	NaN	.	0	3931	GCA_013276415.1|VMKZ01000084.1@region_1_3931@tool_cenote_CDS_0004	persistent	direct	high	152	0.993	GCA_013276415.1_02034
GCA_013276415.1|VMKZ01000084.1@region_1_3931@tool_cenote	cenote	CDS	3323	3601	GCA_013276415.1	VMKZ01000084.1	GCA_013276415.1|VMKZ01000084.1	GCA_013276415.1_VMKZ01000084.1	GCA_013276415.1|VMKZ01000084.1	GCA_013276415_1_126	GCA_013276415_1_126	3324	3602	GCA_013276415_1_126_5	GCA_013276415_1_126_5	+	3931	.	PFAM:PF04531.12	holin	MTEIEHLLIRFLFSLIPVVVLYFSMKDRATKQENRMTAIEKDIENLREFRMSANKRLDNHDEQNKAILVLAEQVKSLGEDVRELKTLIQSKQ*	phrogs_hmm	hypothetical_protein	NaN	.	0	3931	GCA_013276415.1|VMKZ01000084.1@region_1_3931@tool_cenote_CDS_0005	persistent	direct	high	278	0.996	GCA_013276415.1_02035
GCA_013276415.1|VMKZ01000084.1@region_1_3931@tool_cenote	cenote	CDS	3617	3928	GCA_013276415.1	VMKZ01000084.1	GCA_013276415.1|VMKZ01000084.1	GCA_013276415.1_VMKZ01000084.1	GCA_013276415.1|VMKZ01000084.1	GCA_013276415_1_126	GCA_013276415_1_126	3618	3929	GCA_013276415_1_126_6	GCA_013276415_1_126_6	+	3931	.	PFAM:PF14606.5	neck-protein	MVCNLNMTNLRQIDGGHLIKQGDLASTFGFALLDEDYQVISSLEGKEALISLTKEGYQWKKQVTVTGQGVSFHLDAILPIGSYRLEITAGGYVFPSDKSVHIKI	phrogs_hmm	hypothetical_protein	NaN	.	0	3931	GCA_013276415.1|VMKZ01000084.1@region_1_3931@tool_cenote_CDS_0006	.	unmatched_CDS	none	0	0	.
GCA_013276415.1|VMKZ01000092.1@region_1_8575@tool_cenote	cenote	CDS	195	3338	GCA_013276415.1	VMKZ01000092.1	GCA_013276415.1|VMKZ01000092.1	GCA_013276415.1_VMKZ01000092.1	GCA_013276415.1|VMKZ01000092.1	GCA_013276415_1_135	GCA_013276415_1_135	196	3339	GCA_013276415_1_135_1	GCA_013276415_1_135_1	-	8575	.	NF038186	YPDG domain. The YPDG domain may occur once in a protein, or up to 22 times in tandem repeats. It is common in proteins of Gram-positive bacteria with C-terminal LPXTG sites for anchoring on the cell surface.	MGIVAANESAPYAVHMHAKIKLKNSVTADEAMRYGRVYAATTTFGTTTHQSYIMGAGGARLQTTTDAETYPIKGSSHTKTVGDSLPNTDNPVADKYVTSKSGKNFPSGMNWNWQDDRKPSTDQAGVFTYKVIATYKDGSSSENTNSGSDGTVTLNVKPKKPTITTSLENKKGLTNQQITVNVGSGVPKGSTVKLYDGDRVIGTGTTNGETATVTVTEALPGNSITAETIVNNGGEVKSERSDAVTPTEAPDTQAPTLTITPASQTVTEGEWVTFTVTATDDKKAKLDVSDFITQPKYSNRLTTAQAFVESQGSTDTKQIRKITLKALPEDVGKTHTFTFKATDEAGNKANPVTFTFTVTAGDKTGPTITAADATVTKNEPITPIPVTAVDNTGGVGLRDNNPIEVSNLPQGLKYENGKITGTTNAATGFYTVKIKAYDKNNNSSEKTIRITVEEQASKYNPTGETLTVPYNHNITDDEVKAKVQNFAPGTLTVQSKPSTNTSGNVGNAVVKVTYPDGSHDTVNIPVVVGRPNKDDYTPKYNDGSGKPGASVDIPLTEANGKTIPSGTTYTSLTPGVVTVDDKGKVTVTIPKDKKPGDEITGKVLVRYPDGSEEEVPVKVTVTNQDKDDYTPKYEDGNGKPGTEVKIPLTEENGKKIPTGTTFESGTPGITVDKDGKVTVTIPADKNPGDKITGKVTVTYPDGSKEEVPVTVTVGEQDKDIYTPKYEDGNGKPGTKVEIPLTEENGKKIPTGTTFESDQPGVITVDKDGKVTVTIPKEAKPGDKITGKVTVTYPDGSKEEVPVKVTVTTPAKLTPATPETEKPGKIEITQQPNGNAIVTPKKPDGSTYPRGTKVEIPGENGTTITVTIGDNGSGEVPNDNLPKTKVPGTGKVTEPNKKPSQPVDVTTPARKTPTVELSQDPTTGDVTVTPKKPDGSTYPEGTIVELPGKDGRPIKVTIGADGSAKVPNDQLPDTTVVGNAKITEPGKAAVEVPNVTTPAKVTVSTEQPSKSHNVLPNTGTESNATLASLGLLGMLSGLGFAFRKKKED*	mmseqs_cdd	nonviral_gene	NaN	.	0	8575	GCA_013276415.1|VMKZ01000092.1@region_1_8575@tool_cenote_CDS_0001	shell	direct	high	3143	1.0	GCA_013276415.1_02108
GCA_013276415.1|VMKZ01000092.1@region_1_8575@tool_cenote	cenote	CDS	3552	4580	GCA_013276415.1	VMKZ01000092.1	GCA_013276415.1|VMKZ01000092.1	GCA_013276415.1_VMKZ01000092.1	GCA_013276415.1|VMKZ01000092.1	GCA_013276415_1_135	GCA_013276415_1_135	3553	4581	GCA_013276415_1_135_2	GCA_013276415_1_135_2	-	8575	.	TIGR01168	Gram-positive signal peptide, YSIRK family. Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. There is a strong correlation between proteins carrying this region at the N-terminus and those carrying the Gram-positive anchor domain with the LPXTG sortase processing site at the C-terminus.	MEDKSNSLSRVKRHQREKVLRFSIRKYSFGAASVAVAALMFMGANVVSADSPSQNTSSSTTGLASPKDGEQSSEAGQARDENQAEVASEPSANKEAQPAEEKAATVDSSRLSKLVEEVSALLSTDSKHDPSVVSPIKERLQKGQELLARADAGQGELDSLAEKLEKDLAVLSSSSKEESQPQGSESADKNASSERSDHKEEGSDRAASASGAEDKPKRSRRSKRALESIPGTVNEGALSDVRYFASVDPSTNEGKNTRNNDEDFTRDKTVIRARYQEDNEGKWMVYDVFFNNDGNRMTNHSYQQQYYFQAPFNIMDSSNTVKDLSFTRYQKQGGRRLSDGNA*	mmseqs_cdd	nonviral_gene	NaN	.	0	8575	GCA_013276415.1|VMKZ01000092.1@region_1_8575@tool_cenote_CDS_0002	shell	direct	high	1028	0.999	GCA_013276415.1_02109
GCA_013276415.1|VMKZ01000092.1@region_1_8575@tool_cenote	cenote	CDS	5562	6794	GCA_013276415.1	VMKZ01000092.1	GCA_013276415.1|VMKZ01000092.1	GCA_013276415.1_VMKZ01000092.1	GCA_013276415.1|VMKZ01000092.1	GCA_013276415_1_135	GCA_013276415_1_135	5563	6795	GCA_013276415_1_135_3	GCA_013276415_1_135_3	-	8575	.	PRK09265	aminotransferase AlaT; Validated	MNGGNKMKEYNKSSKLEHVAYDIRGPVLEEAMRMRANGEKILRLNTGNPAEFGFTAPDEVIHDLIMNARDSEGYSDSKGIFSARKAIMQYCQLKKFPNVAMDDIYLGNGVSELIVMSMQGLLDNGDEVLVPMPDYPLWTAAVSLAGGNAVHYICDEAAEWYPDIADIKSKITSNTKAIVLINPNNPTGALYPKELLLEIIEIARQNDLIIFADEIYDRMVMDGHVHTPVASLAPDLFCVSMNGLSKSHRIAGFRVGWMVLSGPKTHVKGYIEGLNMLSNMRLCSNVLAQQVVQTSLGGHQSVDELLLPGGRIYEQRNFIYNAIQEIPGLSAVKPKAGLYIFPKIDRNMYRIDDDEQFVLDFLKQEKVLLVHGRGFNWQEPDHFRIVYLPRVEELAQIQEKMTRFLKQYRR*	mmseqs_cdd	nonviral_gene	NaN	.	0	8575	GCA_013276415.1|VMKZ01000092.1@region_1_8575@tool_cenote_CDS_0003	persistent	direct	moderate	1215	0.985	GCA_013276415.1_02111
GCA_013276415.1|VMKZ01000092.1@region_1_8575@tool_cenote	cenote	CDS	6920	7450	GCA_013276415.1	VMKZ01000092.1	GCA_013276415.1|VMKZ01000092.1	GCA_013276415.1_VMKZ01000092.1	GCA_013276415.1|VMKZ01000092.1	GCA_013276415_1_135	GCA_013276415_1_135	6921	7451	GCA_013276415_1_135_4	GCA_013276415_1_135_4	-	8575	.	PDB:4G0R_A	Capsid-protein	MMFVLFTFGMVIPVVAQENSNNIDQSITILKKYTELDESNIPFIRTDIMEEQNENKETITLAEMVNELAISYKNQKLSHNKVIKRIRRGLIPTYGNWCGPGHTMDDRNGNAIDILDWACKDHDICYRDNGYWNIDCDKRFIKQLKAILDSDVLSPDGRLYASAAYTLFSTMRNYGG*	hallmark_hmm	common_virus	NaN	.	0	8575	GCA_013276415.1|VMKZ01000092.1@region_1_8575@tool_cenote_CDS_0004	shell	direct	high	530	0.998	GCA_013276415.1_02112
GCA_013276415.1|VMKZ01000092.1@region_1_8575@tool_cenote	cenote	CDS	7498	7869	GCA_013276415.1	VMKZ01000092.1	GCA_013276415.1|VMKZ01000092.1	GCA_013276415.1_VMKZ01000092.1	GCA_013276415.1|VMKZ01000092.1	GCA_013276415_1_135	GCA_013276415_1_135	7499	7870	GCA_013276415_1_135_5	GCA_013276415_1_135_5	-	8575	.	.	hypothetical protein	MYVYMLKYIKKSESKDRIDWRGVVMKNSFQESKKINFLYYGIILASVLVEVIMIWQLDRLIPLLYPGFVGFLVFHLLYHLVLFLVAKRSGRWDYLMIWGLFLMFNLLYDSFLGLLFLGLSFGM*	.	hypothetical_protein	NaN	.	0	8575	GCA_013276415.1|VMKZ01000092.1@region_1_8575@tool_cenote_CDS_0005	persistent	direct	moderate	300	0.806	GCA_013276415.1_02113
GCA_013276415.1|VMKZ01000092.1@region_1_8575@tool_cenote	cenote	CDS	7969	8421	GCA_013276415.1	VMKZ01000092.1	GCA_013276415.1|VMKZ01000092.1	GCA_013276415.1_VMKZ01000092.1	GCA_013276415.1|VMKZ01000092.1	GCA_013276415_1_135	GCA_013276415_1_135	7970	8422	GCA_013276415_1_135_6	GCA_013276415_1_135_6	+	8575	.	PFAM:PF00582.25	universal-stress-protein	MTQRYQNIMVAIDGSKEADLAFVKGVHSALRNDAKLTIAHVIDTRALQSVSTFDAEVYEQLQVDAESLMKEYEKRAKDAGVADVHIVIEMGNPKTLLARTIPDAEEVDLILLGATGLNAFERLLVGSSSEYILRHAKVDLLVVREQEKTL*	phrogs_hmm	nonviral_gene	NaN	.	0	8575	GCA_013276415.1|VMKZ01000092.1@region_1_8575@tool_cenote_CDS_0006	persistent	direct	high	452	0.998	GCA_013276415.1_02114
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	1	1107	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	2	1108	GCA_013276415_1_93_1	GCA_013276415_1_93_1	-	16602	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTEGNRPLNEAYNDEIVHFGNNTYQLTFRFPTSDPKWELLKEETFLTADDLHGEQDFYIFEVEKQQGYIQVYANQVISLLNNYIVSSIEVDRVSGTRVLSAFAGSITRANPFSFFSDIDDRHTLNIKDKNAMEVLAKDKHSILGQWGGDMVRNGYNLRLLKNGGSENESLFMYKKNLSSYQHKTSTKSLKTRITFKTTVKGEGENAVDHDYMVVIDSPLLGNYSQIYEDVVEVNDQDVTDEASLIAYGKQYFRTSMCDMLEDNLEISVVGQSDVAVQMFDVVSIYHEWYGLDVRKKITKYTYSPMAKRLKSIGFGTFQSSLANAIGGIVNDAVLNESRNLHQIFEERLKKEIANADRAFDAEFTKR	hallmark_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0001	persistent	ambiguous	low	3	0.003	GCA_013276415.1_01423
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	1104	1802	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	1105	1803	GCA_013276415_1_93_2	GCA_013276415_1_93_2	-	16602	.	PDB:2X8K_A	Distal-Tail-Protein	MFYMIINGFNTSTIPHCVVTDFGQVEAAKPRVVEDANLYGANGSYRVLDGGYESYERTFSFYIPKLLDVSTIVEKFQPKDNVLEFSYQLGSVFYADFIGATYSPHGMHAWKLELKLSMQPFRYQKSVEPLIFTASGNINNPGSVYSEPVIEIEGDGDISLTIGRTTMHLTVRRKVTIDCRHKKQNIYNADGAVQNTLRKRGGFFELAVGNNGLVFTGAVRKVTVRPNWRYIL*	hallmark_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0002	persistent	direct	high	698	0.999	GCA_013276415.1_01423
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	1802	4213	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	1803	4214	GCA_013276415_1_93_3	GCA_013276415_1_93_3	-	16602	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATELGKAYVQIIPSAKGISGMIQKEMGGEVASAGVSAGESLGSKMIGAVSGIIAAAGIGKTIGASINEGAALQQSLGGVETLFKDSADKVKGFANEAYKTTGLSANAYMENVTGFSASLLQSLGGDTDKAAETANMAMIDMSDNANKMGTSMESIQLAYQGFAKQNYTMLDNLKLGYGGTKQEMQRLLSDAEKLTGVKYDMNNLSDVYSAIHAIQENLDITGTTAREAATTFTGSFESMKAAAQNVLGKLSLGEDIQPALQSLLETTSTFLFGNLIPMIGNILKQIPNLILGGIKSVFSGIFGEGLGSIMGGIVTALGSAFLAFKAFSAVTGLLSRIPAILTTIKTAVTGLFTAMSANPIGIAIAAIAALTAGLVYFFTQTEMGRQIWQGFMDWFSGVWQSVAPVLTEVWNGIVETATTVWNNMMAVVAPIIQAVVDFIRSVWDGISLWWTENQGLIQQTFTTVWNAIQTVIQTVMPIIQSIIETAMNILAPFIETTWNNICTVVTTVWELIKIAIQTAMDVIGGIIKAVMAIINGDWGTAWNAIKGVGEAIWKGLSAAGKAIFDGFAQILSNIWNTIKSVASSAWEGLKSTVLGLIDGLVQGAKKAWESMKQGVRDLVSNVTSIFDGIRNIDLWSAGKAILDGFLGGLKSAWGAVTDFVGGIASWIRDHKGPIEYDRKLLIPAGNAIMQGLNRGLQDRFKGVKKSVSGMAGEISNAFSNDDFGLSGTPTIAKNIEASLAMPSAQIEAKDSQTVSEIAILRASMEKILTAILEKPSDTYLDADKISMSVYQRQGAIYAREGM*	hallmark_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0003	shell	direct	high	2411	1.0	GCA_013276415.1_01424
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	4213	4596	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	4214	4597	GCA_013276415_1_93_4	GCA_013276415_1_93_4	-	16602	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MNLDEDALICDLAETYQIYDYKQLPLNEVAVFAYGLRDDSRIKQIMSDQIVSLEITLLANIVDRLSISLWLQTKDGQKGVNRPASIAEMLTKNNKEERDERDYLVFESGEDFENYRKALLAKTGGEE*	mmseqs_cdd	nonviral_gene	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0004	shell	direct	high	383	0.997	GCA_013276415.1_01425
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	4611	4886	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	4612	4887	GCA_013276415_1_93_5	GCA_013276415_1_93_5	-	16602	.	.	hypothetical protein	MSKTFKGETKLGFKFEISERRLNNYELLELIGEVDEGQGQVFPKVVKLLFGDEQAKAFKDHLREEDGIVPNDKMADEIKSVFESVNGLKKS*	.	hypothetical_protein	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0005	shell	direct	high	275	0.996	GCA_013276415.1_01426
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	4892	5449	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	4893	5450	GCA_013276415_1_93_6	GCA_013276415_1_93_6	-	16602	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MTTASASNVTAAKPKIGGAVSTAPAGTDLPTNAKTTLNPAFKTLGYISEDGLTNENSPESEEVKAWGGQTVLSSQTKKKDTFKYKLIEGLNIEVLKEVYGPDNVSGTLETGITVTANGKELPEHRLVIDTLLKNGCVKRVVIPRGKVSQIGEINYKDGEPIGYDLTITALPDNSENTHYEYIQGA*	hallmark_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0006	shell	direct	high	557	0.998	GCA_013276415.1_01427
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	5531	5866	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	5532	5867	GCA_013276415_1_93_7	GCA_013276415_1_93_7	-	16602	.	PDB:2LFP_A	tail-completion-protein	MIELVIKKFLDGQLDVPSFFEHKPNMPESYVILEKTGSGGSDYVHSATFAFQSYAPSLQKAAELNEKVKKVVEDLITVNEVSGVHHNSDYNFTDTETKQYRYQAVYDINYF*	hallmark_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0007	shell	direct	high	335	0.997	GCA_013276415.1_01428
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	5863	6099	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	5864	6100	GCA_013276415_1_93_8	GCA_013276415_1_93_8	-	16602	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MSNMKFQLNSAGVSALLRSSEMQGILREKGQGIAERAGEGFELTVSPGQKRANAKISTTDIKSMARNKKHNILLKAMR*	hallmark_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0008	shell	direct	high	236	0.996	GCA_013276415.1_01429
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	6092	6430	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	6093	6431	GCA_013276415_1_93_9	GCA_013276415_1_93_9	-	16602	.	PFAM:PF10665.8	Minor-capsid-protein	MTYLKGIPVILVDKVEIGNDDFGHPIHRDVEIEVQNVLVAPTSSEDVINQMNLTGKKAEYTLGIPKGDTNKWENREVKFFGRKWRTIGIPQEGIESMIPLSWNRKVMVEVYE*	hallmark_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0009	shell	direct	high	338	0.997	GCA_013276415.1_01430
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	6375	6815	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	6376	6816	GCA_013276415_1_93_10	GCA_013276415_1_93_10	-	16602	.	PFAM:PF09355.9	head-to-tail-adaptor	MGNFAKIEDLELLWRSLKFDERARAEALLEVVSNSLRVEAEKVGKDLDDMVAESVSFASVAKSVTVDIVARTLMTSTDHEPMTQVAESALGYSFSGSYLVPGGGLFIKDTELKRLGLKKKQRYGAIEIYDLPKRNPCHFSGQGRNW*	hallmark_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0010	shell	direct	high	440	0.998	GCA_013276415.1_01431
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	6819	7031	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	6820	7032	GCA_013276415_1_93_11	GCA_013276415_1_93_11	-	16602	.	cd12935	LEM-like domain of lamina-associated polypeptide 2 (LAP2) and similar proteins. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and postmitotic reassembly. Some of the LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are nonmembrane nuclear polypeptides. All LAP2 isoforms contain an N-terminal lamina-associated polypeptide-Emerin-MAN1 (LEM)-domain that is connected to a highly divergent LEM-like domain by an unstructured linker. Both LEM and LEM-like domains share the same structural fold, mainly composed of two large parallel alpha helices. However, their biochemical nature of the solvent-accessible residues is completely different, which indicates the two domains may target different protein surfaces. The LEM domain is responsible for the interaction with the nonspecific DNA binding protein barrier-to-autointegration factor (BAF), and the LEM-like domain is involved in chromosome binding. The family also includes the yeast helix-extension-helix domain-containing proteins, Heh1p (formerly called Src1p) and Heh2p, and their uncharacterized homologs found mainly in fungi and several in bacteria. Heh1p and Heh2p are inner nuclear membrane proteins that might interact with nuclear pore complexes (NPCs). Heh1p is involved in mitosis. It functions at the interface between subtelomeric gene expression and transcription export (TREX)-dependent messenger RNA export through NPCs. The function of Heh2p remains ill-defined. Both Heh1p and Heh2p contain a LEM-like domain (also termed HeH domain), but lack a LEM domain.	MALYRDTKTGVIISAESVLGGDWVPVEKQVIEEEHLTVVELKSSLDELGIHYEKNAKKSELLSLYKSHKG*	mmseqs_cdd	nonviral_gene	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0011	shell	direct	high	212	0.995	GCA_013276415.1_01432
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	7037	7936	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	7038	7937	GCA_013276415_1_93_12	GCA_013276415_1_93_12	-	16602	.	PDB:3JB5_B	Major-Capsid-protein	MADNAMKAGTLFKPELVTELISKVQGKSVLAKLSAQTPIPFNGVEQFIFNLEGNAQIVGEGEQKLGNKAKLTSKIIKPLKFVYQARITDEFKYASEEKQMNFLSAYMDGFAKKIAEAFDLAALHGLEPKTMTDASFRATNSFDGVISGSVVTYDEAKIDENLEDAVQQVIARGCEVTGIALSPIAGQALGKLKDADKRPVYPEFRFGQNPDSFYGMKSDINKNLTVTGDSAETDHAIVGDFQNRFKWGYAENIPMEIIEYGDPDGAGRDLKAYNEICLRAEAFIGWGILDEDAFARVKA*	hallmark_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0012	shell	direct	high	899	0.999	GCA_013276415.1_01433
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	7942	8412	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	7943	8413	GCA_013276415_1_93_13	GCA_013276415_1_93_13	-	16602	.	PDB:6B0X_d	Major-Capsid-protein	MKMSEFKTIETQEELDNIVKERIRREREKFGDYDELKKRVSELESENGALKATVEETKQTIAESDAQITELQGQVSNYETASLRTRIALQNGLPYDLADRLQGADEEALKADAERLAGFMRPATPPAPLRDTEPPIGDDKTMQMKQMLRELQPKGE*	hallmark_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0013	shell	direct	moderate	465	0.987	GCA_013276415.1_01434
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	8488	9900	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	8489	9901	GCA_013276415_1_93_14	GCA_013276415_1_93_14	-	16602	.	PFAM:PF03354.14	Large-Terminase	MARKKLGNQNPTQSVILKYVKKNSKAKEAVEIYERTGLSCYAWQVNLLTSIMAVDKNGLWVHQKFGYSIPRRNGKSELLYLFELWGLHNGLNILHTAHRISTSHSSFEKVKRYLEKMGYVDGEHFSSIRAKGQERIELFDGGGIVQFRTRTSNGGLGEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPVSNGTVFTNYRKTCLFGRGKYSGWAEWSVSEEKEIDDVEAWYNSNPSMGCHLNERKIEAELGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCVDSMPDLSGKLFVGVKYGQDGANVALSIAVRTVDERIFVETIDCQSVRNGNDWILDFVKRADVATIVVDGASGQKILDEELKKERMKSVILPTVKEIIVANSMWEQGIYQKTLCHAGQPSLKKITTNCEKRNIGSNGGFGYRSHFADMDISLMDSALLAHWACVTTKPKKKQKISY*	hallmark_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0014	shell	direct	high	1412	0.999	GCA_013276415.1_01435
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	9951	10181	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	9952	10182	GCA_013276415_1_93_15	GCA_013276415_1_93_15	-	16602	.	.	hypothetical protein	MGNIIDFSEKKSSLERGASVKEILEENLEASHDYTSVLVVSLDKDGEINLGYSWDSSLQALGMLDVAKNYILNVIN*	.	hypothetical_protein	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0015	shell	direct	high	230	0.996	GCA_013276415.1_01436
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	10231	10458	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	10232	10459	GCA_013276415_1_93_16	GCA_013276415_1_93_16	-	16602	.	.	hypothetical protein	MLKFNLIEVVNGFYHYEVFPEGDVSRREIFEFNPSTREIKRNDPPKYGFDYVSKCIINLKNEDGSLKESGQVAWY*	.	hypothetical_protein	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0016	shell	direct	high	227	0.996	GCA_013276415.1_01437
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	10445	11680	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	10446	11681	GCA_013276415_1_93_17	GCA_013276415_1_93_17	-	16602	.	PFAM:PF06152.10	minor-head-protein	MVEDIVPSLLKKIKSEFEGARLDSEVLKDLLSKLDHGKANYLDANQYAIEIGEILSKALGASLTNETLPDGKMYYNIAQRVLTDVLGRNHELVSDYAEQVQKNLNSEAKIGLVAQVPELNQDRIDGLVNRLASEESFDDVKWLIVDPIVIFSQSIVDDSIRKNVEFHHKVGLSPKIVRRVVGHPCKWCKSLEGSYNYPEVPKDIYRRHGNCRCTVDYHPGNGKKQNVHTKRWAESQKSAKIEVLKGVGLPVQSGARNYFRDESNDDILPKDFIKAEKHAYLTYDKIKNSNQELEKRKIYSNIGKFKEMKDFTKEDVDIAFNHVFNDIHLLKDGESLFHPEVNMAESWERLITGKDIQSHDLILLKHERLEHDYMYVRGNMDYDTAHAKTDETYNYGNALTRYLERKNNVKI*	phrogs_hmm	hypothetical_protein	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0017	cloud	direct	high	1235	0.999	GCA_013276415.1_01438
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	11634	12938	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	11635	12939	GCA_013276415_1_93_18	GCA_013276415_1_93_18	-	16602	.	PDB:2JES_G	Portal-Protein	MTLKGMGYLRKKLANYKMGVDTRYKQYAMQHNEVDVGITIPPQIRQQYRAVLGWAAKGVDSLADRLVFREFANDEFGANEIFAQNNPDVFFDSAILSALIGSCCFVYISQGDDDDAPRLQVIEASNATGVLDPITGLLTEGYAVLKRDDNGYAVLEAYFTSDVTWFYPKDGKPFAIGNPTGVPLLVPVSHRPDAVRPFGRSRITRAGMYYQRYAKRTLERSDVTAEFYSFPQKYVLGLSQDAEAIDTWKATVSSLLTFTKDDEGDKPNVGQFTTSSMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGSGLLNVAYVATCLRDEFSYLRKQFNKTIVKWEPLFEADANMLTLIGDGVIKLNQAVPGYMDAETIRDLTGIKGSDKPAPVVKEGADGGGYRSEPAQENQV*	hallmark_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0018	shell	direct	high	1304	0.999	GCA_013276415.1_01439
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	13076	13420	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	13077	13421	GCA_013276415_1_93_19	GCA_013276415_1_93_19	-	16602	.	pfam01844	HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	MNTNPLRADRSGPHRVAFEKNKKIILKTRNTCGICGQPVDKDLRYPHPLSPVIDHIVPVNKNGHPSDIANLQLAHWQCNRQKSDKLYADEKTNGTKVIGNRNLPQSTDWFKYKG*	mmseqs_cdd	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0019	shell	direct	high	344	0.997	GCA_013276415.1_01440
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	13655	14221	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	13656	14222	GCA_013276415_1_93_20	GCA_013276415_1_93_20	-	16602	.	CDD:cd01192	site-specific-tyrosine-recombinase	MKKVEPIRDLDDIERIKDYLKNKSDRNYVLFMFGIYSGLRVSDIVPLQVKQVIADRIELKEKKTGKIRYFPISPPLRKEINRYIKDNQLAEYDYLFPSKKKKRTDGVRITHIGRVAVYQILQDAAKYVGLNHIGTHSMRKTFGYHHYKKNSNVAILQKIFNHSTPDITLGYIGYSQDELDQSILSFDY*	common_virus_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0020	shell	direct	high	566	0.998	GCA_013276415.1_01441
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	14511	14939	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	14512	14940	GCA_013276415_1_93_21	GCA_013276415_1_93_21	-	16602	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQIELLDIIDEKKTRKEAIKVLKKYSRLRRIAGEEYAPKITISYSLEPKSSSGQTSKQVESMVLRRVSAQQDLELIAKAINNLSDMEYTRILIERYCRKKRREDYSIYSELGYSSSEYYRILNKALLEFAESYQASNLLVYK*	mmseqs_cdd	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0021	persistent	direct	high	428	0.998	GCA_013276415.1_01442
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	15010	15240	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	15011	15241	GCA_013276415_1_93_22	GCA_013276415_1_93_22	-	16602	.	PDB:2FJR_A	Repressor-protein-CI	MKDKLNPRQASRFAFLLKQKRKERKLSQEKLAAKLGYSRYLIAKWEKEESVPNIYNVEDICTYFAFPADIILGSRA*	common_virus_hmm	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0022	shell	direct	high	230	0.996	GCA_013276415.1_01443
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	15230	15409	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	15231	15410	GCA_013276415_1_93_23	GCA_013276415_1_93_23	-	16602	.	PFAM:PF04936.11	host-nuclease-inhibitor	MNEYALYQGETFVTIGTLEEISKETGIAERMLKYYTFASTQKRHPNGRAVIKIEVDDEG*	phrogs_hmm	hypothetical_protein	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0023	shell	direct	high	179	0.994	GCA_013276415.1_01444
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	15402	15515	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	15403	15516	GCA_013276415_1_93_24	GCA_013276415_1_93_24	-	16602	.	PFAM:PF11753.7	kinase	MTDNINKPSHYQGANGLEDLKKARKNLDWLIEEMEHE*	phrogs_hmm	hypothetical_protein	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0024	shell	direct	high	113	0.991	GCA_013276415.1_01445
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	15517	16029	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	15518	16030	GCA_013276415_1_93_25	GCA_013276415_1_93_25	-	16602	.	PFAM:PF13921.5	transcriptional-regulator,-D5-like	MAGRRWTEDEVDYILLAHNDNESTVEEVADFLGRTVSSVRCKSEIINKGKGQFTKCHWQDEEIRILRRYYQKVQDLNQLAKILNRSLDAVIIKANRLGLPRRKKKWDISKYDIETLGKMGMSCRQIACQLDRPLRLIRAVVYHYKIPVGKEEIQQHPWSFDNDMIFMRRT*	phrogs_hmm	hypothetical_protein	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0025	shell	direct	high	512	0.998	GCA_013276415.1_01446
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	16016	16195	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	16017	16196	GCA_013276415_1_93_26	GCA_013276415_1_93_26	-	16602	.	.	hypothetical protein	MPDVEWIMENCHMMRDNGIWAGEKQISYASPDGQYTYYVNKRKDGTYYLHGAYKHYGRT*	.	hypothetical_protein	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0026	shell	direct	high	179	0.994	GCA_013276415.1_01447
GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote	cenote	CDS	16188	16586	GCA_013276415.1	VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415.1_VMKZ01000052.1	GCA_013276415.1|VMKZ01000052.1	GCA_013276415_1_93	GCA_013276415_1_93@C0	16189	16587	GCA_013276415_1_93_27	GCA_013276415_1_93_27	-	16602	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MTPKFRVWDSVEKKFVEHFFITDNGLICNMEKPTSDSKLLIPIEKSELILMQSTGLKDKNGKEIFEGDVLEIQDEGEVLGNAKLTWDNEQAVFMIEAISVDDIAPFHEILSDESYSYRVVGNIYENKELLDA*	mmseqs_cdd	common_virus	C0	16603.0	0	16603	GCA_013276415.1|VMKZ01000052.1@region_1_16603@tool_cenote_CDS_0027	cloud	direct	high	398	0.997	GCA_013276415.1_01448
GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote	cenote	tRNA	18272	18351	GCA_013276415.1	VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415.1_VMKZ01000065.1	GCA_013276415.1|VMKZ01000065.1	GCA_013276415_1_106	GCA_013276415_1_106@C0	18273	18352	tRNA-Lys	tRNA-Lys	-	20369	.	tRNAscan-SE score: 63.8	Lys	NA	tRNAscan-SE	.	C0	20370.0	0	20370	GCA_013276415.1|VMKZ01000065.1@region_1_20370@tool_cenote_tRNA_0001	.	.	.	.	.	.