core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	1	1316	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	1	1317	GCA_013276435_1_49_1	GCA_013276435_1_49_1	-	18254	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTEGNRPLNEAYNDEIVHLGNNTYQLTFRFPTSDPKWELLKEETFLTADDLHGEQDFYIFEVEKQQGYIQVYANQVISLLNNYIVSSIEVDRVSGTRVLSAFAGSITRANPFSFFSDIDDRHTLNIKDKNAMEVLAKDKHSILGQWGGDMVRNGYNLRLLKNGGSENESLFMYKKNLSSYQHKTSTKSLKTRITFKTTVKGEGENAVDHDYMVVIDSPLLGNYSQIYEDVVEVNDQDVTDEASLIAYGKQYFRTSMCDMLEDNLEISVVGQSDVAVQMFDVVSIYHEWYGLDVRKKITKYTYSPMAKRLKSIGFGTFQSSLANAIGGIVNDAVLNESRNLHQIFEERLKKEIANADRAFDAEFTKREKAITDAIELAKAKAEEVKQEVSDTINQRFNSFHDEPLRESRRKAEEALKQAGASSSLAQEAKRIGLDSV	hallmark_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0001	persistent	ambiguous	low	3	0.002	GCA_013276435.1_01148
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	1313	2011	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	1314	2012	GCA_013276435_1_49_2	GCA_013276435_1_49_2	-	18254	.	PDB:2X8K_A	Distal-Tail-Protein	MFYMIINGFNTSTIPHCVVTDFGQVEAAKPRVVEDANLYGANGSYRVLDGGYESYERTFSFYIPKLLDVSTIVEKFQPKDNVLEFSYQLGSVFYADFIGATYSPHGMHAWKLELKLSMQPFRYQKSVEPLIFTASGNVNNPGSVYSEPVIEIEGDGDISLTIGRTTMHLTIRRKVTIDCRHKKQNIYNADGAVQNTLRKRGGFFELAVGSNGLVFTGAVRKVTVRPNWRYIL*	hallmark_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0002	persistent	direct	high	698	0.999	GCA_013276435.1_01148
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	2011	6186	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	2012	6187	GCA_013276435_1_49_3	GCA_013276435_1_49_3	-	18254	.	PFAM:PF10145.8	minor-tail-protein	MASGTPLGQMYIELGLDVSKFSPTLTGAKNAVKYFQNNVRSLDSTLKGNEKNASLLQAKYKTLGQAIDSQRKVLDEMKKSFDKLDPGTAKFDKAAADIQRENAKLAVMEGQLRGVEKALQDVGRENSWSGKMDAWSEKFAKGGEKLRAMGDAMKPVSAALLAGFTLSTKKAIDFESQMNTTKSLLADTIPTADELNSTTQKLGESSKNWAKQYGISTASINEGMQEIIKKGFDANQTIEAMPAILDAAKASGEDFNTVMNATTNILQQFGLSTQDTERVTNSLTFVANKTAAGFADMGAAMEYVGPVAKNVGMNLEETAAAVGLLSNNGIAGEKAGTALRGALTRLLKPSEQNANAMEKLGFSAEEFRSGAIKLPDILDRIKKNTEGMTDAQKSALIATAFGTEAQTAMNILVDQGGDALRNLANETKGATTYTKDLANELSKSSKNGVERFKSSLEVLQINIGQKLLPLLTPVIDKVNQFIDWLSKAPPAVQSLAVGIGGFLALGYPFLNFLGNGATALSILIKHAGKLEGLLKGGLGLAKLTERAGKLKGLLQGGLGLAKVGSEATVLAEGAGAAASSSSLLSGAIGALTNPIGLLVGGAALLAGGLVYLGHKKDEARIKAEEFGSQLSDTARKELRDFQSKVDDTSTAVANFGTHAGDAEKVSEAFRKLHEEVAAGAEKANQRMEELAKKLGFSDEEIAKMKVKNDQVVSNTDAMANQVSEIYKRHNGDASKFSQEEKEIVLNNQREMIKARIEMMELSGEQQKAALQALNGEIGSLNETQLKHTRDVLKKALDEENQLYKTSKDGLKQLLDAKRIDQETYNKKIQELETNHQQTMEALGTKYYQVMQNLDAKVKARTGQSWNYWEEAKKVLEEYGLSYEVIGQKAAEASQKMGDSHSILAKYTSDMSKETREANDAWSLLVGNIDENNNFVIKSNVKEVIGEATKSAEGWEQLQFIVKNANINSNARVTIAEALVESGKWSTMTLEEKQLIVQNQAGLQAIFDSENHLRIWNSMPAEVKQLLLENTDVMNKAEEASKALYNYDALTPKQKELLATDENFRKAVARSTDTLTTWNATTPFTKDLKLDPTNVLNNGQLSIDKIMAWNLSNPENKSLNAIDNTSEAVASAKASVNSPKQEKPIDLLAKDQTAGVRNETSAAINAIKQHNPVDILAKNSTSSTVSEVKSVVNSIQDKTVTISARDNASGVLAGIRSWITRVTGDFFTNVFASRHAHGTNYHPGGLAMVNDQRNSTYKELVTLPDGRSFIPEGRDVLLPLPKGAKVLRADKTKRLMREMGVPKYAAGVGIPSDAKFLREMEEAQAKIVVQTKGDTNSKDSDKVVSEIAILRASMEKILTAILEKPSDTYLDADKISMSVYQRQGAIYAREGM*	hallmark_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0003	shell	direct	high	4175	1.0	GCA_013276435.1_01149
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	6242	6472	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	6243	6473	GCA_013276435_1_49_4	GCA_013276435_1_49_4	-	18254	.	.	hypothetical protein	MSRKEKACRRYWFWFTIFILYLAFGLYCICTNFVDIFGMLLLSPFIFASLPLYAYLYLGMFIWSFMSLAMDDFYKE*	.	hypothetical_protein	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0004	shell	direct	high	230	0.996	GCA_013276435.1_01150
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	6721	7014	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	6722	7015	GCA_013276435_1_49_5	GCA_013276435_1_49_5	-	18254	.	.	hypothetical protein	MAKVQFTIKNDKGEDVLKKSKEITTRDYRDYLVMNESLTSDLSEVEKLDKQLGFIASLFDDVTVEQLLEYTDFAKVISIFTAIYAHLVGDVDPKEKS*	.	hypothetical_protein	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0005	shell	direct	high	293	0.997	GCA_013276435.1_01152
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	7060	7656	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	7061	7657	GCA_013276435_1_49_6	GCA_013276435_1_49_6	-	18254	.	PFAM:PF04630.11	major-tail-protein	MTVKGTALIGLKSVTIRVHDGQTPTVGQNLFTLEGKDNEGATQTARVTGLSSDPVKTYGSNVAYHVSNRGVGDVKVEMGLLDVPLALYTNALGYGDDDGIYYFGADTVAKNVSILIESNTADGEPVYYGFYKGQLSMDAIDFETLKDKANELATTSVNFTATASSDVATKGRYGAIVYGSDAEKLKKLKGQLNITAAG*	hallmark_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0006	shell	direct	high	596	0.998	GCA_013276435.1_01153
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	7673	8053	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	7674	8054	GCA_013276435_1_49_7	GCA_013276435_1_49_7	-	18254	.	PFAM:PF05657.10	tail-component	MIKDKLTELYDALEEDESLSGISIKSFERPESLGDGETSIVIIPVGPPMQTAHGSNTSLAKTFLYQINVESTNRVECKELQGRIEKIMEEQGFYQTEGGLEQWIPDIKRYVDVRTYRGMSALYEKY*	hallmark_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0007	shell	direct	high	380	0.997	GCA_013276435.1_01154
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	8053	8451	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	8054	8452	GCA_013276435_1_49_8	GCA_013276435_1_49_8	-	18254	.	PFAM:PF04883.11	tail-component	MSSGANLKGFDDILRNIEARLGEPVVRRKVNRALKETVEEFEPTFKRAMAVYADTGKTVGAVVHGNVTGTSSGVPMVKLGFKSPRWTLIHLNEFGYAKNGHPRGFGVMRRFFEASKPVFKSKVGMKLKQEFL*	hallmark_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0008	shell	direct	high	398	0.997	GCA_013276435.1_01155
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	8444	8833	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	8445	8834	GCA_013276435_1_49_9	GCA_013276435_1_49_9	-	18254	.	PDB:2KZ4_A	head-closure-knob	MKRSEGPSYRYKKPESQNGDLRTPLTFYTSKIKKGVDGRDVSYEKAFYTMGQTYSPSMKDVEIATGKAMKAKMTLKIRDPLTDYQPENRHFVEVGDIRLVGKKWQIIDVRPDFANRDFLIVLIGGGRDV*	hallmark_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0009	shell	direct	high	389	0.997	GCA_013276435.1_01156
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	8820	9008	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	8821	9009	GCA_013276435_1_49_10	GCA_013276435_1_49_10	-	18254	.	.	hypothetical protein	MIKVLKEFYDLKEGVLRQVGERFEATEERFAELKEHLPDYVELEKSSRSRSSKEVVSVNEEE*	.	hypothetical_protein	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0010	shell	direct	high	188	0.995	GCA_013276435.1_01157
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	9001	9291	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	9002	9292	GCA_013276435_1_49_11	GCA_013276435_1_49_11	-	18254	.	CDD:cd08054	Head-Tail-Connector-Protein	MEIEAKLHSLLDPFKERMRIFHSGEDANLSRMLESSQMVITRLVGSGNIHDHQIRELILERARYVYNDQVEFFYENFKADILALSLDKIEMEDSDD*	hallmark_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0011	shell	direct	high	290	0.997	GCA_013276435.1_01158
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	9305	10420	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	9306	10421	GCA_013276435_1_49_12	GCA_013276435_1_49_12	-	18254	.	PFAM:PF06673.10	Major-Capsid-protein	MMKLGNEFTTARQNFMNAVETGAPMEEQNKLYNEMIEALTDKLQDDAREAARKEIATMNPYDAQLTAEAREFFNNIEKLPPKGIEKLFPQETIDRIFEDMVAARPLLQHIGLRNAGIRLKFLKSSRTGQAVWGKINAEIQGQLKQEFAEEEAIQSKLTAFVVIPKDSEKFGPAWLQSYVSIQITEAFAAALEAGYLNGDGDNKPIGLSRTLTGTAESEKVTYAEKQAQKKPLTFADSATVVKELTEVYKYHSTKADNTTPVAVEGNLVMVVNPVDAWDVKKQYTSLNAQGVYVTAMPYNLILVESVAQASGKVTTFVKGRYDAFVGGGIEFGRFTETYALEDLNLYTAKQFAYGKAHDEKTAAVWTLSIAK*	hallmark_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0012	shell	direct	high	1115	0.999	GCA_013276435.1_01159
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	10439	11161	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	10440	11162	GCA_013276435_1_49_13	GCA_013276435_1_49_13	-	18254	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MTIIQIKGAIVSNDDRWFYDWIDMDATAPKDIVLPTTGEDVEVHINSGGGDVYAGSEIYTALRAYQGHVTVKIVGIAASAASVIAMAGDQVEISPTAQIMIHNVSAGVRGDHKALLHEAGVLEGFNKSIAYAYIDKTGKALDDLLDLMEGETWFDARSAVNHGFADKVMFESQEAPVLVASQTPVIPRDFIEKIRSAMTPDVELLADLVRDRLNNSLPIPEDKKKEDKTAEPVGLGRFPF*	common_virus_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0013	shell	direct	high	722	0.999	GCA_013276435.1_01160
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	11142	12290	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	11143	12291	GCA_013276435_1_49_14	GCA_013276435_1_49_14	-	18254	.	PFAM:PF04860.11	Portal-protein	MGFLNLFKRDAPDVVFDFEELERMLGCLQLKSLAIDKSAEFVARIFAKSEFRYMVENHHVTSDWDYILNVRPNKNESASEFWQKVIYRLLTKNEVLIVLSDDKQLLVADAFTRRRYALYDDTFEMVSVGDYTFQRKFAMSDVIFLQYNNNRLQEYVSDLFSDYEKLHTRLVEALARNNQIRGVLATKANGTFDEDKRKKLQRYADNLFKSFTSKTVAIVPTMDGVEYSELTNTVGTTNLSVEELKKLRRQFDDEVADILGLPTALMHGDMADLSNSQKMFNSYCYESLVKKVGDALNHAMVSSAGYANQKKFVIFGEGGLDKFALAENIDKLISSGAMTRNEVRLELGLEAVPGGDSFLITKNYQGENEIEKGGNEDDNHSD*	hallmark_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0014	shell	direct	high	1148	0.999	GCA_013276435.1_01161
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	12346	13986	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	12347	13987	GCA_013276435_1_49_15	GCA_013276435_1_49_15	-	18254	.	PFAM:PF03354.14	Large-Terminase	MISHPLVDDYIKMVECGDIVVNKERKLLFKIIKEKIYPRDDLYFDNDLIDKFIRFAEKNFFPLAKYQLFLTPFIFLFRKVDEEPHFDEYLYTLARGGGKNGFMSARSSFFISPIYPIRDYDVTITANSEKQGKVSFEEVYETIQRRGLEDHFYLTKMSITGRANNSVFSFRTNNPKTMDSARDGCLEFDEIHQFENDKAVKVQRSGLGKIAHVRTFYNGTNGYVREGFYDKLIEKSMQILNGEVDDFRLFPFICKLDSADEVDDMKNWPKANPMLDESTPYAKRLLARTKADYDDLELEPSGRQEFMTKRMNLPEADLEKDVTTRERLLACLRSPGIDLLGKSCVAGFDYASIRDFASVGLLFKNGDEFIWKQHSFARKAFLKAFKLKAPIQEWADRGLFTIVDGPSIDPRLLVEKLNEWSKFYQIELVCADGFRMDLLKPLLEEAGFEYEFLRNPGAIQSKVAPIIEDGFANERFVFENDNSMIWYTDNTYVKEDKDGNKRFLKKEPVRRKTDGFHALIAALYKRELVHESNVGEFLDMLEDWEF*	hallmark_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0015	shell	direct	high	1640	0.999	GCA_013276435.1_01162
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	13983	14321	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	13984	14322	GCA_013276435_1_49_16	GCA_013276435_1_49_16	-	18254	.	PFAM:PF05119.11	Small-Terminase	MEEYSEKNIKELENQLLSKIGYFSPRKKDAIQYEKVNRYLYLVRLLYDLKAKLHEDGLVITVHNGQQRFQKANSLIKEINTTSNQLLAIERSFDFDVENSPVEKATSGSDLL*	hallmark_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0016	shell	direct	high	338	0.997	GCA_013276435.1_01163
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	14440	14736	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	14441	14737	GCA_013276435_1_49_17	GCA_013276435_1_49_17	-	18254	.	PDB:5H0M_A	HNH-endonuclease	MIEVSTREERNQFYNSSEWRTIRRQALKRDHYECVWCRDEGKVTTTNLEVDHIKELEFYPEFALDIDNLRTLCKACHNKRHDRFDKNDRNFRKDEWWG*	common_virus_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0017	.	unmatched_CDS	none	0	0	.
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	14950	15492	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	14951	15493	GCA_013276435_1_49_18	GCA_013276435_1_49_18	-	18254	.	CDD:cd01192	site-specific-tyrosine-recombinase	MNIVEPIRDKDDIQAMKDYLREWNERNYILFLFGINSGLRVGDILKIRVKDVQGWYIKLKEQKTGKKKKIKMTKTLKREVREYIQNKPHHHFLFQSRVGKNKPLDRRTVDWILKVAASECGIENIGTHSMRKTFGYHYYKKTKDIAMLMSLFNHSSPAITLRYIGIRQDQQDKAMSNFGL*	common_virus_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0018	shell	direct	high	542	0.998	GCA_013276435.1_01164
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	15836	16264	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	15837	16265	GCA_013276435_1_49_19	GCA_013276435_1_49_19	-	18254	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQIELLDIIDEKKTRKEAIKVLKKYSRLRRIAGEEYAPKITISYSLEPKSSSGQTSKQVESMVLRRVSAQQDLELIAKAINNLSDMEYTRILIERYCRKKRREDYSIYSELGYSSSEYYRILNKALLEFAESYQASNLLVYK*	mmseqs_cdd	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0019	persistent	direct	high	428	0.998	GCA_013276435.1_01165
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	16335	16565	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	16336	16566	GCA_013276435_1_49_20	GCA_013276435_1_49_20	-	18254	.	PDB:2FJR_A	Repressor-protein-CI	MKDKLNPRQASRFAFLLKQKRKERKLSQEKLAAKLGYSRYLIAKWEKEESVPNIYNVEDICTYFAFPADIILGSRA*	common_virus_hmm	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0020	shell	direct	high	230	0.996	GCA_013276435.1_01166
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	16555	16734	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	16556	16735	GCA_013276435_1_49_21	GCA_013276435_1_49_21	-	18254	.	PFAM:PF04936.11	host-nuclease-inhibitor	MNEYALYQGETFVTIGTLEEISKETGIAERMLKYYTFASTQKRHPNGRAVIKIEVDDEG*	phrogs_hmm	hypothetical_protein	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0021	shell	direct	high	179	0.994	GCA_013276435.1_01167
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	16727	16840	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	16728	16841	GCA_013276435_1_49_22	GCA_013276435_1_49_22	-	18254	.	PFAM:PF11753.7	kinase	MTDNINKPSHYQGANGLEDLKKARKNLDWLIEEMEHE*	phrogs_hmm	hypothetical_protein	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0022	shell	direct	high	113	0.991	GCA_013276435.1_01168
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	16842	17354	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	16843	17355	GCA_013276435_1_49_23	GCA_013276435_1_49_23	-	18254	.	PFAM:PF13921.5	transcriptional-regulator,-D5-like	MAGRRWTEDEVDYILLAHNDNESTVEEVADFLGRTVSSVRCKSEIINKGKGQFTKRHWQDEEIRILRRYYQKVQDLNQLAKILNRSLDAVIIKANRLGLPRRKKKWDISKYDIETLGKMGMSCRQIACQLDRPLRLIRAVVYHYKIPVGKEEIQQHPWSFDNDMIFMRRT*	phrogs_hmm	hypothetical_protein	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0023	shell	direct	high	512	0.998	GCA_013276435.1_01169
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	17341	17520	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	17342	17521	GCA_013276435_1_49_24	GCA_013276435_1_49_24	-	18254	.	.	hypothetical protein	MPDVEWIMENCHMMRDNGIWAGEKQISYASPDGQYTYYVNKRKDGTYYLHGAYKHYGRT*	.	hypothetical_protein	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0024	shell	direct	high	179	0.994	GCA_013276435.1_01170
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	17513	17920	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	17514	17921	GCA_013276435_1_49_25	GCA_013276435_1_49_25	-	18254	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MIPKFRAWDRLRKEMNYKVMVGNCDLSDENWTCPIIWIEEKKDWLHFDDYECIMQSTGLKDKNGKEIFEGDVLEIQDEGEVLGNAKLTWDNEQAVFMIEAISVDDIAPFHEILSDESYSYRVVGNIYENKELLDA*	mmseqs_cdd	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0025	shell	direct	high	407	0.998	GCA_013276435.1_01171
GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote	cenote	CDS	17917	18177	GCA_013276435.1	VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435.1_VMLB01000033.1	GCA_013276435.1|VMLB01000033.1	GCA_013276435_1_49	GCA_013276435_1_49@C0	17918	18178	GCA_013276435_1_49_26	GCA_013276435_1_49_26	-	18254	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILVSAGLNIWQMDRIAELEKKKPMVIYKADNAGAEIFGKVVEKGRHGKLYTLTIRDYGVFVVTKDVYEKVKVGDEVML*	mmseqs_cdd	common_virus	C0	18255.0	0	18255	GCA_013276435.1|VMLB01000033.1@region_1_18255@tool_cenote_CDS_0026	persistent	direct	high	260	0.996	GCA_013276435.1_01172
GCA_013276435.1|VMLB01000050.1@region_1_2563@tool_cenote	cenote	CDS	536	1366	GCA_013276435.1	VMLB01000050.1	GCA_013276435.1|VMLB01000050.1	GCA_013276435.1_VMLB01000050.1	GCA_013276435.1|VMLB01000050.1	GCA_013276435_1_66	GCA_013276435_1_66	537	1367	GCA_013276435_1_66_1	GCA_013276435_1_66_1	-	2563	.	.	hypothetical protein	MNSTEVINLFLLYQDYNLVYVNPFHELMKNLFHKMNEPEAAEFFSKQEEVKKEILNEIEEYKQDYTLILSDIFLTTRQKENQLENKFKQRERAIREKSLVYFKDWKEFSQNKISPLITEMLSILHEENSLYRSNIFEFLEKLKSFYTIESHEVTTDGFLRSKLLEEYQFKNVDKKFKDKYYYINKGQQQYYEQAIVEELEHYNLSTDMVLWNDLLLEELVQDGKITGHSIEEFTEYISGVVDDFIDRKEQELIKQRGVFNDLPEKKRNIISRFFGQ*	.	hypothetical_protein	NaN	.	0	2563	GCA_013276435.1|VMLB01000050.1@region_1_2563@tool_cenote_CDS_0001	shell	direct	high	830	0.999	GCA_013276435.1_01477
GCA_013276435.1|VMLB01000050.1@region_1_2563@tool_cenote	cenote	CDS	1370	2515	GCA_013276435.1	VMLB01000050.1	GCA_013276435.1|VMLB01000050.1	GCA_013276435.1_VMLB01000050.1	GCA_013276435.1|VMLB01000050.1	GCA_013276435_1_66	GCA_013276435_1_66	1371	2516	GCA_013276435_1_66_2	GCA_013276435_1_66_2	-	2563	.	PFAM:PF06673.10	Major-Capsid-protein	MRLEGQTKKEYMQAREAFMNAVKTNAPQEQQTKLYSDMLDALQEHMIEEAKTASYSGDGFTSQPNTLKGNEMVFFNEFDKNIPKGVEKLLPEETIDRIFEDIKSEHPLLEKIGLKNLGIRLNFLTSERSGGAVWGKVFGEIKGQLKASFGSKQDIQHKLTAFIVIPKDFKELGPIWIENFVRTQLTEAFAVALEEAFLNGDGDNKPLGLTRKLTGVAQDSNITYPKKEKQALKLTFENPKETVNQVSEIFKFHSVKADGVSFIDTTNKIVLVVNPSEIWEIEKKLINFTDSATYNKAVPLNLQIVPSISQEKGKATSFIQGRYDAVLGGGINLQRYQDTLALEDMDLYIAKQFAYGKAHDEKTAAIWEFDFSKNQAPGIGG*	hallmark_hmm	common_virus	NaN	.	0	2563	GCA_013276435.1|VMLB01000050.1@region_1_2563@tool_cenote_CDS_0002	shell	direct	high	1145	0.999	GCA_013276435.1_01478
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	1	1788	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	2	1789	GCA_013276435_1_72_1	GCA_013276435_1_72_1	-	19477	.	PFAM:PF07902.10	minor-structural-protein	MDALTRRQSMFAKERTLAIRVGDYTSRDIKEASFEYGYIKGDTYKPGGTCAGSGKITFTSIITTFNKLDTLHPEIGLLVGDTYQWVKMGEYFINDIEIDRNRNTTTLELMDGMFKLNREYVTDLHFPAEVREVIQEICLKTGIELANDYFGISAMRYHVEQVPEGKKLSFRDMLSAMTQMIGMSCFFNREGKMEIRDLTESNITINADSYFLHGLTKSEIEYQIAGITCKTDKKPLTVGMKTGRSLELDNVFMTQSALNDLYYKLKNLTYYPYNLNYQGHLLLEVGQWVTIQTNKKETFKVPVLSQSFTFKGGLRGRISADSKAGNDTQYSYEGTITKQIKQQDGIEAKIQAQIEAADAAFDAEFTKREKAITDAIELAKAKAEEVKQEVSDTINQRFNSFHDEPLRESRRKAEEALKQAGASSSLAQEAKQIGLDSVARLEAFKSQTRSAQTALSGDLNLLKQTVTNDISSKQRQLKTDISKQVQALGQIKNDLAGVRSSQARYEETTKGRLTALTNRMEGKANKSEVRQTAETLTSQIDRIQEESSTRISTMTSRFNQRADALDAGVRRLTEGLRTKADISSLNVTAENIRQSV	common_virus_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	1793	2143	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	1794	2144	GCA_013276435_1_72_2	GCA_013276435_1_72_2	-	19477	.	.	hypothetical protein	MAQLTINGVAVKPPKSFQVGIQDIDGETGRNANGDMVRDRITTKRKLDCEWGMMTQGELSQLLHAVSSEFFEVSYPDPMDGQVTKTFYVGDRTAPSYTFTEKFKPWSGAKFNLVER*	.	hypothetical_protein	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0002	shell	direct	high	350	0.997	GCA_013276435.1_01602
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	2152	5238	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	2153	5239	GCA_013276435_1_72_3	GCA_013276435_1_72_3	-	19477	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MAMIESTEAFKKFANGQSWQQLDYQTQQQIRLMAILEQATAKYGDTLSNSVNGRISLFKSLMKDSALNLGNAMLPIINAIMPVLNSFAMVLKNVTAKLAEFIALMFNKKATVKDGVGGAVGDMGNAMKDAAGGAGDLADAVDDAGDSAGGLADNLGDSAKNAKKAAKELLGLLGFDEINILQKPKDDDAGGSGGGGKGGKGKGGGGGPFKDILPEVELTDMDNQFKSIFDGLGDKLKGLFDLFKKGFDAAFRPEGIERIKTALDQIAKTMGEIATDPRVVNAFNRMAEKIAYALGQVTGSIATIGLGIGVFLAESIANGLGRQKERITRALVALFDNIGNIAEAVGNIAQAFSSAFYDVITSTGAVRIGSAIVSTLLSLTSTIVEVGSKLAGSLFKGFEKVVVTSAPKISSVFQSLLDTVAPVFESIERSVNKFGDGLSRVYDEHVVPAINSIANAFNGLIDIIQILWENSWQPFAEFLSGVFGVSIEGISDLLGGGLLATLGLLADAIKLVADGFTVFSDWCKENKEPILALITAWQTINFLSWAEQAGGLAGAFELLSSKVSFIVSGIKNLGLALKALTFDKLVSFGETIYLNALYAKDFVVNSGKTIAQLGKTALELGKSALAWTAHTAKMGLATAAEFAHSVAAGVATAATWAFNAALAVLTSPITLVIAAIAALIAIGVLLYQNWDTVVEFAKTAWQGLCDFISGICQAIGEFFSGLWTKLQEIFEPIGQWFGEKFQQGWDAIVNIFSGIGEWFSGVFQGAWDAIVNIFTPIGSWFGQRWADVTSALANIGAWFTDMFQKAWTGLTNIFSKLGSWFGERWNDVTSALSKVASWFGDIFGKAFDAVKNAFSSIGDFFKGVWDTVKSIFVNAGQMVGEAVGGAFKSAVNAVLGTIENVVNGFIGMINGVLDVVRNLPGLGWIGSVSTVSLPRLARGGIVDSPTIAMIGEAGKEAVVPLENTGFIQTLGRVVSSAVVNAMAGVGPQGGFSGDGDIVIQIAGHEFGRVAIQEINKEHERAGQTLLKI*	hallmark_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0003	shell	direct	high	3081	0.998	GCA_013276435.1_01603
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	5540	6103	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	5541	6104	GCA_013276435_1_72_4	GCA_013276435_1_72_4	-	19477	.	PFAM:PF04582.11	tail-length-tape-measure-protein	MATLDELKVMIDAEIAPFRKKMKEVENQVKGTSDQVKNATAKIREQSSSIGSAFGKLAKFAGFAILGKKLLDVGMYSTQTALEVSAAMNQIKRQMGESSQSFLKWVNDNANAMNMGVGEATNYGAVYSNLFSGFIKDTNKLSAYTAKMLQTSAVVAEGSGRTITDVMERIRSGLLGNTEAIDFCRTA*	phrogs_hmm	hypothetical_protein	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0004	shell	direct	high	563	0.998	GCA_013276435.1_01604
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	6090	6440	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	6091	6441	GCA_013276435_1_72_5	GCA_013276435_1_72_5	-	19477	.	.	hypothetical protein	MFLDIGGKPLDFWDLTVLEIREMIESYNRVKIQERKEKIIDSYRLSQMISNHVSLLLSKDAKVFEFWEYAPELFVEEQQAVEQERQRQALLLHKERMRDFADRHNRKRKEEMNGNS*	.	hypothetical_protein	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0005	shell	direct	high	350	0.997	GCA_013276435.1_01605
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	6479	6859	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	6480	6860	GCA_013276435_1_72_6	GCA_013276435_1_72_6	-	19477	.	PFAM:PF12363.7	tail-assembly-chaperone-protein	MALPYSIWKISDEKELKLRLSSHQAAKVEEKIGMNLLKIFMPEAGEEFPLPPLKVVLLLIHGALQKYENGYSLEDVYDLYDEYVDNGGDQTTFMTEVLMPLFEVSGFTPRGSKGKKTSKKKMTVVE*	hallmark_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0006	shell	direct	high	380	0.997	GCA_013276435.1_01606
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	6864	7277	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	6865	7278	GCA_013276435_1_72_7	GCA_013276435_1_72_7	-	19477	.	PFAM:PF16463.4	tail-tube-protein	MLANGITLSYSETKGSYTKLVGLKEVPEFGIEPEKVENTTLEDKVKKYEFGIGDAGELEYKFSYNNSSETAPYRVLRKAADDKKKLYFEQAYPDGTKVNFEGQVSVKLGGGGVNAVIEFTLKIALQSELEFTDGLGG*	hallmark_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0007	shell	direct	high	413	0.998	GCA_013276435.1_01607
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	7280	7648	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	7281	7649	GCA_013276435_1_72_8	GCA_013276435_1_72_8	-	19477	.	PFAM:PF05657.10	tail-component	MINIKPVIYKELQKVADNVTDTYPSDWETFPVVIFLEEQNKPGDWFDDQEQKSSIRYKVDIFDDTSTSELAVKINQIFESLGLRRTDCQDVPDPSHLRHKVMRFEGVVDLHSELVFQFRMEN*	hallmark_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0008	shell	direct	high	368	0.997	GCA_013276435.1_01608
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	7645	8160	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	7646	8161	GCA_013276435_1_72_9	GCA_013276435_1_72_9	-	19477	.	PFAM:PF04883.11	putative-tail-component	MSELRGADRLIAKCRRLASKKTGEDIVLRAVHNAAIKVVQADAKRLAPGNNGELRNSIKTRVKMDGDKAIGEVYTNLHYAPYVEFGTGPKGQASHSGISPEVSVSYRSSPWYVHEDQINVGPYHFQKIGEFYKMYGQPAQPYLYPALRDNQERVSKNISDYVRRKIREQIK*	hallmark_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0009	shell	direct	high	515	0.998	GCA_013276435.1_01609
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	8135	8473	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	8136	8474	GCA_013276435_1_72_10	GCA_013276435_1_72_10	-	19477	.	PDB:2KX4_A	head-closure-knob	MFLKQSRLKPYPMRRFEKTVTEEGVAKEGYAKEAETVRLELWPAGSKLQSELYGERVNDILNANANKSATIKVKDGVCIDSPTEVTHRVISKKVYTYHQVLELERVRATRGR*	hallmark_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0010	shell	direct	high	338	0.997	GCA_013276435.1_01610
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	8454	8765	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	8455	8766	GCA_013276435_1_72_11	GCA_013276435_1_72_11	-	19477	.	PFAM:PF05135.12	head-tail-adaptor	MSIELLKKLTGEEDTQLLMLLQTRATNLILSETNRTSLTPALSLLIPEVAIELHNRSGAEGEHSRTEGGIAVVYGENGLSTGLLQRIRMHRLARVAGHVFEAE*	phrogs_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0011	shell	direct	high	311	0.997	GCA_013276435.1_01611
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	8767	8955	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	8768	8956	GCA_013276435_1_72_12	GCA_013276435_1_72_12	-	19477	.	.	hypothetical protein	MKFKIKQDFYDWELNVKRLAGEELEITEERYAELADNFASNGVAISDVLEEILPEPEFLEED*	.	hypothetical_protein	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0012	shell	direct	high	188	0.995	GCA_013276435.1_01612
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	8945	9127	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	8946	9128	GCA_013276435_1_72_13	GCA_013276435_1_72_13	-	19477	.	PFAM:PF09124.9	endonuclease-VII	MSLLLRRHYIQEEQAGQYSDLENKTLEELKNLAKEAGITGAYKLSKAEIVEVLEDLKSEI*	phrogs_hmm	hypothetical_protein	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0013	shell	direct	high	182	0.995	GCA_013276435.1_01613
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	9139	9981	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	9140	9982	GCA_013276435_1_72_14	GCA_013276435_1_72_14	-	19477	.	PDB:4AN5_F	Major-Capsid-protein	MTAGQTKLATMVNPEVMADMVSAKLPKLIKFTPLAYVETALQGQPGNTLTVPAWEYAGDATEVGEGQAISPDKLTTKKTTMTIKKAAKGYEITDEALLSGLGDPLGQATYQLGLAIANKIDDDLVAVAKTATQHVAETPTTLEAIDKALDIFEDEEDAQYVAIINPKDATKLKTDVAKEWTKGSELGANMVVSGTFGEVAGVQIVRSKKVEEGKGFLVKVSPSQTQTDDANKYGAFVIMLKRDVAIETDRDILKKTTVITGDKHYGVYLYDPTRVVKFGE*	hallmark_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0014	shell	direct	high	842	0.999	GCA_013276435.1_01614
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	9987	10556	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	9988	10557	GCA_013276435_1_72_15	GCA_013276435_1_72_15	-	19477	.	PDB:6B0X_d	capsid-scaffolding-protein	MNEETQTVETVEEQKVPAEPAQQPQDEKKYTDADVDAIIDKKFAKWKSEQEAKENEAKKLAKMNADEKQKYQLDQREQELADREKAIARKELTAEAKAMLSERDLPVELVNVVDLTSAETVSQSVAVLQKSWEQAVQKGVQEKLKGGAPMKQAPVDSDGITKEEFARMGYQSRNELYQKNPELYKKLKG*	hallmark_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0015	shell	direct	high	569	0.998	GCA_013276435.1_01615
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	10846	12342	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	10847	12343	GCA_013276435_1_72_16	GCA_013276435_1_72_16	-	19477	.	PFAM:PF06152.10	minor-capsid-protein	MDKAEKQADQFDKVYQEAKTYLDKEVNKIFDKFQRDYGLSQVDARQVLKNMKDKKNLNELRKVLEARPNDPNIQRLLADLDSPAYSFRMKRLERLSDDLDRMRESIYHSEKTGSDAFYSDLMKDSYYKATFDLQQQTGLAYGFSGLPESEIKHLQSFSWVGDGSTYSTNIWKNTGKLTSSIKDELLMSLMTGRGTRETAQAIAERFDVGQNDARRLVRTESAFFHNQMELLSYEEADIEKYIFVAVLDKRTSHICQEHDNKVYDRDKAVPGVNCPPMHPWCRSTTVAYDEDADYSKLKRRARNPETGKTELVPADMTYKEWYSKYVAKDVKNEIQDYKKSDQTVSRYNTQKLFSDVSNAWDEIGKGGLSKEQLVGLLKSEYELGNFSSDITKLIGVSSAYIDVSSLATSLVRHGQQYSLDEFMLIKEAVQKPYLILDNSERVEKSIISYVKIPNKDKVIMEAVMVPRDEMLVIHFNKVGIRQVKKNGKNMLTLYKKEK*	hallmark_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0016	shell	direct	high	1496	0.999	GCA_013276435.1_01617
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	12305	12742	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	12306	12743	GCA_013276435_1_72_17	GCA_013276435_1_72_17	-	19477	.	PDB:5A20_A	Portal-Protein	MGLEMITKTKEANYKRGLRQRIAIFAHYLGMKQIALESHSIVPQFSRGLPKNLLEISQIVNNLEGKVTNRQLISLLPFVEDPDAELEALEEEKKKNMEDMSMFNKDNTKPEDEVEDEESGVLGEEESQSDLPADGQGRKAGRPVR*	hallmark_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0017	shell	direct	high	437	0.998	GCA_013276435.1_01618
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	12972	13505	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	12973	13506	GCA_013276435_1_72_18	GCA_013276435_1_72_18	-	19477	.	PFAM:PF05551.10	homing-endonuclease	MIKDKMHKHLNQVYYSMLARCYDEKHWAYKWYGKRGIGVSDEFSDVAKFRSWAMQNGVEFGLQLDRIDNDKDYSPSNCRWVPEHTNKRNRSDNVKYKGYILRDYLKKLSEENNISFSTLVYRYYRSIKRDDIIVNDETIDDILLNYKKYDLRQFSKGVDMSGKTIVRDEKGRFVTYY*	common_virus_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0018	shell	direct	high	533	0.998	GCA_013276435.1_01619
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	13634	14653	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	13635	14654	GCA_013276435_1_72_19	GCA_013276435_1_72_19	-	19477	.	PDB:5A20_A	Portal-Protein	MYQYLTYPRDGYDEGSLKKDLIYKLITKHSTEGSRLKKLKSYYLGEHAILNHKRRNENAPNYKTVANHAKDIADTATGYFMGNPIKYNNTADGDIDELLTAFDGAEIDQVDAQNALNMAIYGRAYEYIYAKEGMAELDSTSIDPENTFMVYDDSIERKPLFAVYYYEVKDDTKDTTKYQAEVFTENLHYHMVLRSTDSGTTQNEQVTPHNLGQIPIIEYRNNHFAIGDYEQQISLIDAYNSLMGNRVNDKEQAVESILVLYGTQLADTPEDAKVAMKILSEEGLLELPGDSARAEFLKNTLDESATEILRTALKEDIYTFSHVPNLTDENFAGNTSGVK*	hallmark_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0019	shell	direct	high	1019	0.999	GCA_013276435.1_01620
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	14665	15879	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	14666	15880	GCA_013276435_1_72_20	GCA_013276435_1_72_20	-	19477	.	PDB:5OEA_B	Large-Terminase	MTNKFTKRQEEVLTRVLNDDFFICGLHGAKRSGKTVLNNMVFMNEIARVRETADRLNIDEPMYILAGTSSTSIQNNIIQELYNMFDIEPKYDKHGAFTLCGVKVVQVYTGSISGLKRARGFTAFGAYVNEASLANEQVFKEIISRCSGEDARIVWDSNPDIPTHWLRRDYINSGDDMIIDFHFKLDDNTFMSDRYRENIKNATPAGVFYDRDILGLWVTGEGVVYRDFSENMVVDNVPEDITKVYAGVDWGYEHFGSIVVIGETSGGSAYLLEEHAHQYKEIDFWVDLAKNIKERYGNITFWADSARPEHVARFQREQLRTFNANKAVLSGIEEVAKLMKAGHFFVVSNKVSKFKDEVYQYIWNEKTGEPVKENDDVLDAVRYAIYSQHSQPKATVRRRSDYGL*	hallmark_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0020	shell	direct	high	1214	0.999	GCA_013276435.1_01621
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	15869	16363	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	15870	16364	GCA_013276435_1_72_21	GCA_013276435_1_72_21	-	19477	.	PFAM:PF03592.15	Terminase-small-subunit	MGIGLNQRQKMFASEYLRTGNVYQSAIFAGYSEAYAKTTASKLLENASVKTFIQTETEKMHDENILSAKEALSILSDIARGQRLEEVLMMNPVTGEVDRVTKKADNNTVIKAIAEILKRYPTAKQAEKLELEIEKLKSQIGVDSEQDDKLIDFAKALRGAFDDK*	hallmark_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0021	shell	direct	high	494	0.998	GCA_013276435.1_01622
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	16852	17298	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	16853	17299	GCA_013276435_1_72_22	GCA_013276435_1_72_22	-	19477	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MRLLKKVDVQFTKKNVYDVLESYRSYVRMAGAEYLPKITTTYSFEPKTFTGKNTATENMVIEHVDAEAEVLEIERAVNCIMDPYVRQVIAKKYMDMKIQLSDKAIYMDLGYSESEFYRMLSRGALEFAEAYRKGKLIVFRKFLGDICK*	mmseqs_cdd	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0022	shell	direct	high	446	0.998	GCA_013276435.1_01623
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	17427	17642	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	17428	17643	GCA_013276435_1_72_23	GCA_013276435_1_72_23	+	19477	.	PFAM:PF04014.17	transcriptional-regulator	MNTVKTRKVGNSVTVTIPKTLNVPEGQEMFVYKGVDNVIVLAPKIPDPFSGDADLRMEDDFEGVKFLDSEI*	phrogs_hmm	hypothetical_protein	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0023	shell	direct	high	215	0.995	GCA_013276435.1_01624
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	17626	17979	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	17627	17980	GCA_013276435_1_72_24	GCA_013276435_1_72_24	+	19477	.	COG2337	mRNA-degrading endonuclease, toxin component of the MazEF toxin-antitoxin module [Defense mechanisms]. 	MTAKYDYIPEKQDIIWIDFDPSVGREIQKRRPAIVVSRREYSERTGFVAVCPITHGQSRLEEQGLLVPVRSNKVDGSVNPLQLYTFDFRERRAQKITTMDTTSFQKVVQLYNFIFEA*	mmseqs_cdd	nonviral_gene	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0024	shell	direct	high	353	0.997	GCA_013276435.1_01625
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	18000	18236	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	18001	18237	GCA_013276435_1_72_25	GCA_013276435_1_72_25	-	19477	.	PFAM:PF11753.7	nucelotide-kinase	MNPEIIDNINKPSHYQGANGLEAIDVVHNFVGNLSGASAFFWGNAIKYMLRFQKKNGLEDLKKARKNLDWLIEELEKN*	common_virus_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0025	shell	direct	high	236	0.996	GCA_013276435.1_01626
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	18233	18655	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	18234	18656	GCA_013276435_1_72_26	GCA_013276435_1_72_26	-	19477	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MTPKFRVWDSVEKKFVEHFFITDNGLICNMEKPTSDSKLLIPIEKSELILMQSTGLKDKNGVEIFEEDVVSRNSGMPSVVKFGKWIYEEDFGYKIKNIGFHLNSSYDDEWFQAMDYEDIRKNYEVIGNIYENPELLEDKE*	mmseqs_cdd	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0026	shell	direct	high	422	0.998	GCA_013276435.1_01627
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	18652	19143	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	18653	19144	GCA_013276435_1_72_27	GCA_013276435_1_72_27	-	19477	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MNTLEKVKQWFIDRDLENGGRLDKQSLKLSEEFGELCAGYLKKNEKLTKDSIGDCAVVIVGLGLLSKVDLDSIFEESKNVRKNDIMTSFAYANTCISNIQTEQHLKLMTLRIKSLTLLIGHLKSISKSLGYDFEECFELAYQEIKDRKGRWIDGSFVKEEDLA*	phrogs_hmm	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0027	shell	direct	high	491	0.998	GCA_013276435.1_01628
GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote	cenote	CDS	19140	19400	GCA_013276435.1	VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435.1_VMLB01000056.1	GCA_013276435.1|VMLB01000056.1	GCA_013276435_1_72	GCA_013276435_1_72@C0	19141	19401	GCA_013276435_1_72_28	GCA_013276435_1_72_28	-	19477	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILVSAGLNIWQMDRIRDLEEKKPLVIYKADNAGAEIFGKVVEKGRHGKLYTLTIRDYGIFVVTKDVYEKIRVGDEVLL*	mmseqs_cdd	common_virus	C0	19478.0	0	19478	GCA_013276435.1|VMLB01000056.1@region_1_19478@tool_cenote_CDS_0028	persistent	direct	high	260	0.996	GCA_013276435.1_01629