core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	12095	12955	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	1	861	GCA_013276705_1_28_14	GCA_013276705_1_28_14	+	65124	.	PRK07281	methionyl aminopeptidase. 	MITLKSAREIEAMDKAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENFLPLQIGVDGAMMDYPYATCCSLNDEVAHAFPRHYILKDGDLLKVDMVLGGPIAKSDLNVSKLNFNNVEQMKKYTQSYSGGLADSCWAYAVGTPSEEVKNLMDVTKEAMYKGIEQAVIGNRIGDIGAAIQEYAESRGYGVVRDLVGHGVGPTMHEEPMVPNYGIAGRGLRLREGMVLTIEPMINTGDWEIDTDMKTGWAHKTIDGGLSCQYEHQFVITKDGPVILTSQGEEGTY*	mmseqs_cdd	nonviral_gene	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0001	persistent	direct	high	860	0.999	GCA_013276705.1_00998
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	13054	13308	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	960	1214	GCA_013276705_1_28_15	GCA_013276705_1_28_15	+	65124	.	.	hypothetical protein	MRFSDFKIFSNSVCNHIITEGLGFRALLLYTISKAKLGENILVSQSIVPVEVLRYRCFGFKKRNGILFNVRIANLKFTFFILMY*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0002	persistent	direct	high	254	0.996	GCA_013276705.1_00999
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	13472	15763	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	1378	3669	GCA_013276705_1_28_16	GCA_013276705_1_28_16	+	65124	.	PDB:1UAA_B	Replicase	MNALLNGMNDRQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMKRILKQLNLDPKKWNERTILGTISNAKNDLIDDVAYAAQAGDMYTQIVSQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNRRPKNLWTQNADGEQIVYYRANDELDEAVFVAKTIDELGRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQNMSMLDASANIMLSGIKGKVAQSIWDFANMILDLREQLDQLSITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKNFDDTSDGPEEETGLDKLSRFLNDLALIADTDSGSQETSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLSRAAEDPDELEEERRLAYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPANTSFKASYSSGGVAFGQGMSLAQALQDRKRSAAPKSIQSSGLPFGQFTAGAKSASSEANWSIGDIALHKKWGEGTVVEVSGSGATQELKINFPEVGLKKLLASVAPIEKKI*	common_virus_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0003	persistent	direct	high	2291	1.0	GCA_013276705.1_01000
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	15806	16486	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	3712	4392	GCA_013276705_1_28_17	GCA_013276705_1_28_17	+	65124	.	PRK00024	DNA repair protein RadC. 	MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLSNLSSLTDLKKMTLQELQSLSGIGRVKAIELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSATRSIAEPREILHYAIKHMATSLILVHNHPSGAVAPSRNDDHVTKIVKEACDLMGIVLLDHLIVSQSSYFSYREKTDLI*	mmseqs_cdd	nonviral_gene	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0004	persistent	direct	high	680	0.999	GCA_013276705.1_01001
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	16483	17172	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	4389	5078	GCA_013276705_1_28_18	GCA_013276705_1_28_18	-	65124	.	pfam07722	Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	MKKPVIGITGNEKTHPDDDIMMSYAAKGFVEGVKDAGGIPIILPIGDQEMACHYISMIDKLILTGGQNVDPKFYGEPKTIDSDDYHLQRDIFELALIKEAIKQKKPIFSVCRGTQLFNVAMGGTLYQDIEDHWQNCSAEYTTQRLVTEPDTVLREIYGEISHINSFHHQSIKDLAPNLKIAAHDPKDGIIEAVMSTDDVAFLGVQWHPEFLFENRPKDKNLFDYVVNEL*	mmseqs_cdd	nonviral_gene	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0005	persistent	direct	high	689	0.999	GCA_013276705.1_01002
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	17190	17831	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	5096	5737	GCA_013276705_1_28_19	GCA_013276705_1_28_19	-	65124	.	PRK05472	redox-sensing transcriptional repressor Rex; Provisional	MKDKQFAIPKATAKRLSLYYRIFKRFHAEKIERANSKQIAEAIGIDSATVRRDFSYFGELGRRGFGYDVKKLMTFFADLLNDNSITNVMLVGIGNMGHALLHYRFHERNKMKIIMAFDLDDHPEVGTQTPDGIPIYGISQIKDKIKDADVKTAILTVPSVKSQEVANLLVDAGVKGILSFSPVHLHLPKDVVVQYVDLTSELQTLLYFMRKED*	mmseqs_cdd	nonviral_gene	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0006	persistent	direct	high	641	0.998	GCA_013276705.1_01003
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	17914	18129	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	5820	6035	GCA_013276705_1_28_20	GCA_013276705_1_28_20	-	65124	.	4IAJ_B	Conserved domain protein	MFELTYKDSYHVERTLKYEDYEALMLALSGCVTLPDTLYVTSLTFNSQKIYQGLVGDLYRFLSHTDFLHQN*	hhsuite_tools	nonviral_gene	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0007	persistent	direct	high	215	0.995	GCA_013276705.1_01004
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	18137	18484	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	6043	6390	GCA_013276705_1_28_21	GCA_013276705_1_28_21	-	65124	.	pfam08866	Putative amino acid metabolism. Solution of the structure of the Lactobacillus plantarum protein from this family has indicated a potential new fold with remote similarities to TBP-like (TATA-binding protein) structures. This similarity, in combination with genomic context analysis, leads us to propose an involvement in amino-acid metabolism. The potentially novel fold is an alpha + beta fold comprising two beta sheets packed against a single helix. The enzyme is present in the cytosol.	MAFEKTIQLKNCRYDYTLSPSVKKFTLKDNTFFETKVGNYELTRLLEKVPNSGEGFQLKIIINKELTGAKINITDKFGLRLVDIFKSEDHHIHQEKFYFLMDSLVERGVFTKSER*	mmseqs_cdd	nonviral_gene	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0008	persistent	direct	high	347	0.997	GCA_013276705.1_01005
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	18489	19604	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	6395	7510	GCA_013276705_1_28_22	GCA_013276705_1_28_22	-	65124	.	COG1104	Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme [Amino acid transport and metabolism]. 	MIYLDNAATTPMSAVAISAMTEVMQETYGNPSSIHAHGRQAGKLLREARQELAQLLGTKPQHIFFTSGGTEGNNTAIIGYCLRHQEQGKHIITTAIEHHAVLETIDYLVQHFGFEATIIQPENQEITAQQIQEALRDDTILVSTMFANNETGNLLPIAEIGQILKQHPAAYHVDAVQAIGKIPIHPEELGIDFLTASAHKFHGPKGIGFLYASSMDFDSYLHGGDQEQKKRAGTENLAAIVGMVAALKEDLEKQEEHFQHVQNLETAFLAELEGIQYYVNRGQHHLPYVLNIGFPDQKNDLLLLRLDLAGISISTGSACTAGIVQSSHVLEAMYGANSERLKESVRISLSPQNTVEDLQTLAKTLKEIIGG*	mmseqs_cdd	nonviral_gene	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0009	persistent	direct	high	1115	0.999	GCA_013276705.1_01006
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	19614	20573	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	7520	8479	GCA_013276705_1_28_23	GCA_013276705_1_28_23	-	65124	.	PDB:5IV5_BD	Baseplate-wedge-protein	MSDRKNMKLFALNSNQEIAQKIAEAVGVPLGKLSSRQFSDGEIQVNIEESVRGYDVYIIQSTSFPVNNHLMELLIMVDACVRASAHSINVVLPYFGYARQDRIACPREPLTAKLVANMLVKAGVDRILTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCDKGLLGSDVVVVSPKNSGVKRARSLAEYLDAPIAIIDYPQDDATRNEGYIIGDVEGKKAILIDDILNTGRTFSEAAKIVEREGATEIYAVSSHGLFVEGAAELLDNTNIKEILVTDSVATKEKTPKNVCYITASELIGDAIVRIHERKPVSPLFAYNKKK*	common_virus_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0010	persistent	direct	high	959	0.999	GCA_013276705.1_01007
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	20686	21255	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	8592	9161	GCA_013276705_1_28_24	GCA_013276705_1_28_24	-	65124	.	COG4116	Predicted triphosphatase or cyclase YjbK, contains CYTH domain [General function prediction only]. 	MKHLEIELKTLLKKDEYDRLKDQFTGVTPVLQKNYYIDTPDFELREKKVAMRIRTFEDWAELTLKVPQSVGNMEYNQKLQLKDAENYLSKKEFPQGIVLDELAKHGIQTSEWQVLGCLTTLRYEMQTAIGLMALDESQYFDMTDYELELEVENHEQGKQDFQQFLEENQISYQKAPSKLVRFVKSMKNS*	mmseqs_cdd	nonviral_gene	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0011	persistent	direct	high	569	0.998	GCA_013276705.1_01008
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	21388	22533	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	9294	10439	GCA_013276705_1_28_25	GCA_013276705_1_28_25	-	65124	.	PDB:1XO0_A	Recombinase	MIKKYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKVAERDLLLDVEENGFSSNEDFQNPTFAEVADLWLDSYKSTVKPTTYQNVKKKLDVMIDLYFTDMKIQQISVAYCQKVAIQLSNRYILYANYYSVISRIFKYATSIDIIKSNPLDKIIKPKNRPLKTKENYYTKQELTEFLKVCRVDCKPVEYTFYHLLAFTGLRTGEAIGLIWSDVDFENKRLDISRTAVVIGDKQTVQDPKTKRSKRVITLDDETLNVLKLWKRQQIKEYFQAGVPYKHDSNYIFTNNGGGWISPSAVKERLRRFFCEHKDVKKITPHGFRHTHASLLFEAGVTAKIISDRLGHNNVQATLDMYTHINDNQRFEVVDQLMDFIRSS*	common_virus_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0012	persistent	direct	high	1145	0.999	GCA_013276705.1_01009
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	22877	23767	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	10783	11673	GCA_013276705_1_28_26	GCA_013276705_1_28_26	-	65124	.	PFAM:PF07751.10	abortive-infection-resistance-protein	MSRQPKWNNRKLINHLASKDVTFNNISIGQAITFLDKNNYYYKLAAFRKNFKKKDGKYVDLDFSYLQDLASLDMKIRAILLNIAIDVEHFIKVELSRQINNNPQEDGYSILTEFKNSQYNKYYEFTKKKFRESRYQNAMFNKRKHDYPYWALLEHMDYGCLIKFVTFYYQKHGCKSLKKASELGDGARHIRNACAHNSVLLLNVFEKDDKLSNVNAVITTFAKQVDVIKYKNYKKVNDLISLLVLAKAYCSPAVLDYQKQAIDNFIVRCQRNQSAYAKNVELTKMMVVFKKIVDIL*	phrogs_hmm	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0013	shell	direct	high	890	0.999	GCA_013276705.1_01010
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	23764	24552	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	11670	12458	GCA_013276705_1_28_27	GCA_013276705_1_28_27	-	65124	.	PDB:2FJR_A	Repressor-protein-CI	MDLKKYIGNQIKLFRKSAGFTQDELAQKLNTTKQTISRYEKGERKANQDMLFSLCDILGVSIDDFFPSISKGDTPTASPDSLTQQITDKVVQLTPDNKKIVLRTSEELLKEQKNEEETKINEVSEVISLYQVEVVSETAAASGFNYGFGYDDTDRETIEVDEQPPRHDIATKVSGDSMQPDYQDGDILYLVDKGLTTYNGDLAVIAYGDRSYFKKIYTENGRLRLVSLNDKYEDIILDFPPAEDTHIKIYAVVGVYRGGATY*	common_virus_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0014	shell	direct	high	788	0.999	GCA_013276705.1_01011
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	24912	25070	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	12818	12976	GCA_013276705_1_28_28	GCA_013276705_1_28_28	+	65124	.	.	hypothetical protein	MDWKKFLFGNFDYEKMNQDNHAKTSLEIRGGLIPSILFWSGIIVLILYLIFR*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0015	shell	direct	high	158	0.994	GCA_013276705.1_01012
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	25400	25585	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	13306	13491	GCA_013276705_1_28_29	GCA_013276705_1_28_29	+	65124	.	PFAM:PF13744.5	transcriptional-repressor	MYGAKMRELRMVQKLGLRELAKRTLIDYTTLSRIENDLKAVTLSQAVVIAKALGCRVEDML*	phrogs_hmm	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0016	persistent	direct	moderate	170	0.914	GCA_013276705.1_01014
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	25597	25794	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	13503	13700	GCA_013276705_1_28_30	GCA_013276705_1_28_30	+	65124	.	.	hypothetical protein	MNNAAQKVTRIDRDAWEIATELANEYGVSICHIISESVRYCAENAEFKEMDVVVKRLVVGSKVLE*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0017	persistent	direct	high	197	0.995	GCA_013276705.1_01015
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	25804	25995	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	13710	13901	GCA_013276705_1_28_31	GCA_013276705_1_28_31	+	65124	.	.	hypothetical protein	MEVFLYVVIVSAITSFLVTVMLLRGYSNRLTEMLENFFDNELQARKEIQKLTLDTMDRIANKK*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0018	shell	direct	high	191	0.995	GCA_013276705.1_01016
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	26028	26168	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	13934	14074	GCA_013276705_1_28_32	GCA_013276705_1_28_32	+	65124	.	.	hypothetical protein	MNANVNVFYELTCKDLNEAIDAKNKIIANTLDDETVEIKIEFLRDV*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0019	shell	direct	high	140	0.993	GCA_013276705.1_01017
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	26194	26724	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	14100	14630	GCA_013276705_1_28_33	GCA_013276705_1_28_33	-	65124	.	.	hypothetical protein	MPQITNDNVQIWTLYITVIIAVIGFVFNTISLWQTKKATEDMAKPYINVYVDVYAVKNQQRTFVFKNFGQTPAYIDNIQIDGELDPLNSVHRFNSLIGNMIAPGQKFTSSIDPDYKGRITLTITYSDSKKHKYIDKFVLDATLASAMFYTVNESNKSDSPATAIRQSTMALLRDLR*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0020	shell	direct	high	530	0.998	GCA_013276705.1_01018
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	26790	26942	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	14696	14848	GCA_013276705_1_28_34	GCA_013276705_1_28_34	+	65124	.	.	hypothetical protein	MANKGFKNSYIDRKKLSSSLKTLMTQQAIERAELAESQRKELEEFLKDLL*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0021	shell	direct	high	152	0.993	GCA_013276705.1_01019
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	26982	27242	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	14888	15148	GCA_013276705_1_28_35	GCA_013276705_1_28_35	+	65124	.	.	hypothetical protein	MSSLSKNLLPIQNLEIKIDSDSSIPRVILNGIDFRAEDIGLQGIKIIWETKKDEVPETLIQVDYINNREAPHIVSVKQSFKNTLLK*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0022	shell	direct	high	260	0.996	GCA_013276705.1_01020
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	27290	28003	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	15196	15909	GCA_013276705_1_28_36	GCA_013276705_1_28_36	+	65124	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNEIFNFHGQEVRTLTIDDEPWFVGKDVADILGYAKPLDAISRHVDEDDSVKYGLTDNLGRTQNTIIINESGLYSLILSSKLPQAKEFKRWVTSEVLPAIRKQGGFIREDLDEDAFIALFTGQKKLREQQTSMLEDIDYLKSEQPIHPSYAQSLLKKRKARVVACLGGIDSPAYADKIFAQSVFRQAEIDFKDHFNISRYDLLPKKHADAALAYWMTWEPSTNTKMKIMELNAFSQA*	common_virus_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0023	shell	direct	high	713	0.999	GCA_013276705.1_01021
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	28017	28172	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	15923	16078	GCA_013276705_1_28_37	GCA_013276705_1_28_37	+	65124	.	.	hypothetical protein	MRPRRYPYSGKRKKQSDRQIAKLKRDIDVNRTNISSLKFVIETLSNHQNYR*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0024	shell	ambiguous	low	37	0.237	GCA_013276705.1_01022
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	28135	28359	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	16041	16265	GCA_013276705_1_28_38	GCA_013276705_1_28_38	-	65124	.	.	hypothetical protein	MSKLSHKPNHVVKKLTWENLDNILLSNFSESTTDKPSAVIQLSDFEMSKTEIIEEATAQGYQVIDNSDGYLKFL*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0025	shell	direct	high	224	0.996	GCA_013276705.1_01022
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	28476	28619	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	16382	16525	GCA_013276705_1_28_39	GCA_013276705_1_28_39	+	65124	.	.	hypothetical protein	MEDKIIELADYFISESTTYREAKIACEKLFRQVSHEIELRALESKTV*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0026	persistent	direct	high	143	0.993	GCA_013276705.1_01023
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	28723	29013	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	16629	16919	GCA_013276705_1_28_40	GCA_013276705_1_28_40	+	65124	.	.	hypothetical protein	MEGITLQLRLDGESAELFTNQLLAFAEKQVKEQLENDRMPINQQALMKKFGFTHGYIKKLERKGLRFRKQGKDIMYDINDVYEILELEKEVRKLRA*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0027	persistent	direct	high	290	0.997	GCA_013276705.1_01024
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	29026	29328	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	16932	17234	GCA_013276705_1_28_41	GCA_013276705_1_28_41	+	65124	.	.	hypothetical protein	MFEPPILDQLMGVGALLIGFAGACRHIKLQEQREEEERREEQEFASMIIQGYERGREDKWQEIRKNIRRPFPGFTYDNEPPEGLRPEPLALPEPKMHSLK*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0028	shell	direct	high	302	0.997	GCA_013276705.1_01025
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	29341	29637	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	17247	17543	GCA_013276705_1_28_42	GCA_013276705_1_28_42	+	65124	.	.	hypothetical protein	MEELIEWLDNLTMIVKELKVRKSTSRHFITIWENDYKNLLLVKEYLTDYKKLAKDYRDVELKNKLLKIEKMELEGRYIYEDMRMKYRANRRKWGARYV*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0029	shell	direct	high	296	0.997	GCA_013276705.1_01026
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	29621	30439	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	17527	18345	GCA_013276705_1_28_43	GCA_013276705_1_28_43	+	65124	.	PFAM:PF09681.9	replisome-organiser	MLGMSEIKWIKITTDIFDDEKICLIDALPDPDAILVIWFKILTLAGKHNSNGLLMMTDKVHYTDEMLATIFRRPLNTVRMAIGVFEQFGMIEIIDGIISLPNWEKHQNVDGMEKIKEQTRNRVAKYRKKQKNLALGNVTGNVTVTDGNALEEDKDKNKNRLDKDKNKKRITTTTSSGGQENILELFQSEFRRLLSGFEIEEINHLLNENDVDLVKEALKTAINSGKPNIKYIGGILRNWQMNNVTTVEQVRQSEKKNKDKKEEQEAKDEWGY*	rep_hall_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0030	persistent	direct	moderate	809	0.988	GCA_013276705.1_01027
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	30427	30585	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	18333	18491	GCA_013276705_1_28_44	GCA_013276705_1_28_44	+	65124	.	.	hypothetical protein	MGILELIEQFEIDYYPLSYEKKTLLADQPIHQVVACLSEMASWHECGGRLSW*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0031	persistent	direct	high	158	0.994	GCA_013276705.1_01028
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	30579	31349	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	18485	19255	GCA_013276705_1_28_45	GCA_013276705_1_28_45	+	65124	.	PDB:4M4W_K	Replicative-helicase	MVDNVFEEIALSYHRNTEQQDEFCEKHNIPLIKILRTESVVCRMCESERIHEENQARVNELADAENERERKYYLEKFSLYDEVLKNATLDNFETPTEKEAEKLAFAKRICREWSEGARNNIVLQGEAGTGKSHLAFAMVKALSEYTKDIAIFINVTDLLMKIKADFSQEEFLVNKIASAKFLVLDDLGMEKDSEWSFTILYNILNKRSNTIITTNLTSADIQKRYGRPFMSRLMKGVDKDHLMVFNDLTNKRKHYF*	rep_hall_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0032	persistent	direct	high	770	0.999	GCA_013276705.1_01029
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	31364	31558	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	19270	19464	GCA_013276705_1_28_46	GCA_013276705_1_28_46	+	65124	.	.	hypothetical protein	MFILKHGTREDKPFLRSAVIGVTGLDISCSEEKKAMRFVSRGAALQVGKALRGSFGNFYPVEVE*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0033	persistent	direct	high	194	0.995	GCA_013276705.1_01030
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	31558	31782	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	19464	19688	GCA_013276705_1_28_47	GCA_013276705_1_28_47	+	65124	.	.	hypothetical protein	MLELYFVYNGHCKFYLGTFDNVDDLIEQMEDYQWAFSAITQPRFQKHIGQRTTRFDYGAKDCYYLATFFRRRRK*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0034	shell	direct	high	224	0.996	GCA_013276705.1_01031
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	31779	31880	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	19685	19786	GCA_013276705_1_28_48	GCA_013276705_1_28_48	+	65124	.	PFAM:PF00436.24	single-strand-DNA-binding-protein	MIEFIKEFGITFLCFFIGYSVVECATGKEKKDD*	phrogs_hmm	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0035	shell	direct	high	101	0.99	GCA_013276705.1_01032
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	31873	32268	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	19779	20174	GCA_013276705_1_28_49	GCA_013276705_1_28_49	+	65124	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MINNVTLVGRLTKDPELKHTPSNVAVATFTLAVNRNFKGANGEREADFINCMMWRKQAELFAEWCKKGNLVGVTGRIQTRNYENQEGSRVYLTEVVADGFERLEKRDDTANRSNIEEQMPGYALEEDDFPF*	common_virus_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0036	persistent	direct	high	395	0.997	GCA_013276705.1_01033
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	32284	32451	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	20190	20357	GCA_013276705_1_28_50	GCA_013276705_1_28_50	+	65124	.	.	hypothetical protein	MVGVTYQEIHLFVEFLKKQYGQGRPDYIEALNDLDGMAEVSYREAIERFLDDELR*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0037	persistent	direct	high	167	0.994	GCA_013276705.1_01034
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	32438	32629	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	20344	20535	GCA_013276705_1_28_51	GCA_013276705_1_28_51	+	65124	.	.	hypothetical protein	MNYDKQVVIEGLKRTIEQNEEKIIEYSKLCDARKRRIRALERDLLKKKNKELRKKVEELEDEI*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0038	shell	direct	high	191	0.995	GCA_013276705.1_01035
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	32619	32951	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	20525	20857	GCA_013276705_1_28_52	GCA_013276705_1_28_52	+	65124	.	.	hypothetical protein	MKYKVTEYHSDFQEEQTGTCELCFGTAWVENGSITVEDENGTETEIYLTVWDWGDYDTIYIDNVVNFSAWLQEREVDPIVEETEPWSWLHELVEKYNEELEDDGRFKEKS*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0039	shell	direct	high	332	0.997	GCA_013276705.1_01036
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	32923	33249	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	20829	21155	GCA_013276705_1_28_53	GCA_013276705_1_28_53	+	65124	.	.	hypothetical protein	MMEDLKKKVNAVYNWTVEDGKPQPPKQDLPQAVKDRADYFWEMAEDGMTFMGAMECIFADEKPTDYDLGATKDWLPKSKEFDDWVGYSPSMAQIVIAVYLIYGGSEDE*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0040	shell	direct	high	326	0.997	GCA_013276705.1_01037
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	33242	33805	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	21148	21711	GCA_013276705_1_28_54	GCA_013276705_1_28_54	+	65124	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNKQELINVPRILFPIGTEILIKGKIVGLKVLADRFVENIVKLDYGEQIIAPNDAIYVKDEPQPVKVPQFVAEFITEQKKLGHTLSYSIDASMSDIVAEWYWDNSELFALAWIFDYEIEEEKRYRVKMKGIVNALSFLSYHKNADIWTVTDKNNSDGHRAHHTRKELEEAGFGWVFDCEGIEVEEVE*	mmseqs_cdd	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0041	cloud	direct	high	563	0.998	GCA_013276705.1_01038
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	33806	34141	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	21712	22047	GCA_013276705_1_28_55	GCA_013276705_1_28_55	+	65124	.	.	hypothetical protein	MENIMFWGMFIACLLISAMTFYIMYSQAMVNRDLVRKYYDLKQELLRTFGWDEYDWANNFRDYACKVEGLIKFKKEIEQLEIIKKALEVKSLEELQKKKEQIESVIKTLEK*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0042	cloud	direct	high	335	0.997	GCA_013276705.1_01039
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	34154	34429	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	22060	22335	GCA_013276705_1_28_56	GCA_013276705_1_28_56	+	65124	.	.	hypothetical protein	MNIKDLEKAGEIRQQIKELEKFINHKKTPLEEALILRQDPKFRLSIKNCTFYSDTTLFITSEVLSDAIKVVLTRTIEDLKEQLIELGVEVD*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0043	cloud	direct	high	275	0.996	GCA_013276705.1_01040
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	34426	34686	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	22332	22592	GCA_013276705_1_28_57	GCA_013276705_1_28_57	+	65124	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILLSAELNIWQMDRIAELEKKKPMVIYKADNAGAEIFGKVLEKGRQGKLYTLTIRDYGVFVVTKDVYEKVKVGDEVML*	mmseqs_cdd	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0044	persistent	direct	high	260	0.996	GCA_013276705.1_01041
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	34683	35075	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	22589	22981	GCA_013276705_1_28_58	GCA_013276705_1_28_58	+	65124	.	TIGR01671	phage uncharacterized protein TIGR01671. This model represents an uncharacterized, well-conserved family of proteins found in bacteriophage and prophage regions of Gram-positive bacteria. [Mobile and extrachromosomal element functions, Prophage functions, Hypothetical proteins, Conserved]	MIPKFRAWDRLRKEMNYKVMVGNCDTDDENWTCPVIWIEDRKKWLHFDDYDSIMQSTGLKDKNGKEVFVGDIIKCTRGCPHEVYLEKEYGGTFIGGMPAVYLKDLGEGYAWTEHEEVIGNIYENPEFLEE*	mmseqs_cdd	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0045	cloud	direct	high	392	0.997	GCA_013276705.1_01042
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	35096	35449	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	23002	23355	GCA_013276705_1_28_59	GCA_013276705_1_28_59	-	65124	.	COG2337	mRNA-degrading endonuclease, toxin component of the MazEF toxin-antitoxin module [Defense mechanisms]. 	MTAKYDYIPEKQDIIWIDFDPSVGREIQKRRPAIVVSRREYSERTGFVAVCPITHGQSRLEEQGLLVPVRSNKVDGSVNPLQLYTFDFRERRAQKITTMDTTSFQKVVQLYNFIFEA*	mmseqs_cdd	nonviral_gene	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0046	shell	direct	high	353	0.997	GCA_013276705.1_01043
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	35433	35648	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	23339	23554	GCA_013276705_1_28_60	GCA_013276705_1_28_60	-	65124	.	PFAM:PF04014.17	transcriptional-regulator	MNTVKTRKVGNSVTVTIPKTLNVPEGQEMFVYKGVDNVIVLAPKIPDPFSGDADLRMEDDFEGVRFLDSEI*	phrogs_hmm	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0047	shell	direct	high	215	0.995	GCA_013276705.1_01044
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	35778	36206	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	23684	24112	GCA_013276705_1_28_61	GCA_013276705_1_28_61	+	65124	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQIELLDIIDEKKTRKEAIKVLKKYSRLRRIAGEEYAPKITISYSLEPKSSSGQTSKQVESMVVRRVSAQQDLELIAKAINNLSDMEYTRILIERYCRKKRREDYSIYSELGYSSSEYYRILNKALLEFAESYQASNLLVYK*	mmseqs_cdd	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0048	persistent	direct	high	428	0.998	GCA_013276705.1_01045
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	36495	37061	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	24401	24967	GCA_013276705_1_28_62	GCA_013276705_1_28_62	+	65124	.	CDD:cd01192	site-specific-tyrosine-recombinase	MNKVEPIRDLDDIERIKDYLKNKSDRNYVLFMFGIYSGLRVSDIVPLQVKQVIADRIELKEKKTGKIRYFPISPPLRKEINRYIKDNQLAEYDYLFPSKKKKRTDGVRITHIGRVAVYQILQDAAKYVGLNHIGTHSMRKTFGYHHYKKNSNVAILQKIFNHSTPDITLGYIGYSQDELDQSILSFDY*	common_virus_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0049	shell	direct	high	566	0.998	GCA_013276705.1_01046
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	37296	37640	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	25202	25546	GCA_013276705_1_28_63	GCA_013276705_1_28_63	+	65124	.	pfam01844	HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	MNTTPIRADRSGPHRVAFEKNKKIILKTRNTCGICGQPVDKDLRYPHPLSPVIDHIVPVNKNGHPSDIANLQLAHWQCNRQKSDKLYADEKTNGTKVIGNRNLPQSTDWFKYKS*	mmseqs_cdd	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0050	cloud	direct	high	345	1.0	GCA_013276705.1_01047
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	37832	39136	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	25738	27042	GCA_013276705_1_28_64	GCA_013276705_1_28_64	+	65124	.	PDB:2JES_G	Portal-Protein	MTLKGMGYLRKKLANYKMGVDTRYKQYAMQHNDIDVGITIPPQIRQQYRAVLGWAAKGVDSLADRLVFREFANDEFGANEIFAQNNPDVFFDSAILSALIGSCCFVYISQGDDDDAPRLQVIEASNATGVLDPITGLLTEGYAVLKRDDNGYAVLEAYFTSDVTWFYPKDGKQFAIGNPTGVPLLVPVIHRPDAVRPFGRSRITRAGMYYQRYAKRTLERSDVTAEFYSFPQKYVLGLSQDAEAIDTWKATVSSLLTFTKDDEGDKPNVGQFTTSSMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGSGLLNVAYVATCLRDEFPYLRKQFNKTVVKWEPLFEADANMLTLIGDGVIKLNQAVPGYMDAETIRDLTGIKGSDKPAPVVKEGADGGGYRSEPAQENQV*	hallmark_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0051	shell	direct	high	1304	0.999	GCA_013276705.1_01048
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	39090	40325	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	26996	28231	GCA_013276705_1_28_65	GCA_013276705_1_28_65	+	65124	.	PFAM:PF06152.10	minor-head-protein	MVEDIVPSLLKKIKSEFEGARLDSEVLKDLLSKLHHSKASYLDANQYAIEIGEILSKALGASLTNETLPDGKMYYNIAQRVLTDVLGRNYELVSDYTEQVQKNLNSEAKIGLAAQVPELNQDRIDGLVNRLASEESFDDVKWLLDDPIVNFSQSIVDDSIRKNVEFHHKVGLSPKIVRRVVGHPCKWCKSLEGSYNYPEVPKDIYRRHGNCRCTVDYHPGNGKKQNVHTKRWAESQKSAKIEVLKGVGLPVQSGARNYFRDESNDDILPKDFIKAEKHAYLTYDKIKNSNQELEKRKIYSNIGKFKEMKDFTKEDVDIAFNHVFNDIHILKDGESLFHPEVNMAESWERLITGKDIQSHDLILLKHERLEHDYMYVRGNMDYDTAHAKTDETYNYGNALTRYLERKNNVKI*	phrogs_hmm	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0052	cloud	direct	high	1235	0.999	GCA_013276705.1_01049
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	40312	40539	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	28218	28445	GCA_013276705_1_28_66	GCA_013276705_1_28_66	+	65124	.	.	hypothetical protein	MLKFNLIEVVNGFYHYEVFPEGDVSRREIFEFNPSTREIKRNDPPKYGFDYVSKCIINLKNEDGSLKESGQVAWY*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0053	shell	direct	high	227	0.996	GCA_013276705.1_01050
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	40589	40819	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	28495	28725	GCA_013276705_1_28_67	GCA_013276705_1_28_67	+	65124	.	.	hypothetical protein	MGNTIDFSEKKSSLERGASVKEILEENLEASHDYTSVLVVSLDKDGEINLGYSWDSSLQALGMLDVAKNYILNVIN*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0054	shell	direct	high	230	0.996	GCA_013276705.1_01051
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	40870	42282	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	28776	30188	GCA_013276705_1_28_68	GCA_013276705_1_28_68	+	65124	.	PFAM:PF03354.14	Large-Terminase	MARKKLGNQNPTQSVILKYVKKNSKAKEAVEIYERTGLSCYAWQINLLTSIMAVDKNGLWVHQKFGYSIPRRNGKSELLYLFELWGLHNGLNILHTAHRISTSHSSFEKVKRYLEKMGYVDGEHFSSIRAKGQERIELFDGGGIVQFRTRTSNGGLGEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPVSNGTVFTNYRKNCLFGKGKYSGWAEWSVSEEKEIDDVDAWYNSNPSMGYHLNERKIEAELGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCVDSMPDLSGKLFVGVKYGQDGANVALSIAVRTVDERIFVETIDCQSVRNGNDWILDFVKRADVATIVVDGASGQKILDEELKKERMKSVILPTVKEIIVANSMWEQGIYQKTLCHAGQPSLKKITTNCEKRNIGSNGGFGYRSHFADMDISLMDSALLAHWACVTTKPKKKQKISY*	hallmark_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0055	shell	direct	high	1412	0.999	GCA_013276705.1_01052
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	42358	42828	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	30264	30734	GCA_013276705_1_28_69	GCA_013276705_1_28_69	+	65124	.	PDB:6B0X_d	Major-Capsid-protein	MKMSEFKTIETQEELDNIVKERIRREREKFGDYDDLKKRVSELETENSALKSTVEDDKQARAGLDAQITELQGQVSNYETASLRTRIALQNGLPYDLADRLQGADEEALRADAERLAGFMRPAIPQAPLRDTEPPIGDDKTMQMKQMLRELQPKGE*	hallmark_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0056	shell	direct	moderate	464	0.985	GCA_013276705.1_01053
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	42834	43730	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	30740	31636	GCA_013276705_1_28_70	GCA_013276705_1_28_70	+	65124	.	PDB:3JB5_B	Major-Capsid-protein	MTDNAMKAGTLFKPELVKEVISKVQGHSVLAKLASQTPIPFNGVEQFIFNLEGNAQIVGEGEQKQAGKAKITSKIIKPIKFVYQARMTDEFKYASEEKQMNFLLEYIDGFAKKIAEGFDLAAIHGLEPKSMTDATFRATNSFDGVITGNIVTYDEAHIDDNIDAAVQTIVAKGGEVTGLALSPTAGQNLAKIKVNGVVQYPEFRFGQNPDSFYGMKSDISKNLTVTGGTAETDHAIVGDFQNRFKWGYAENIPMEIIEYGDPDGAGRDLKAYNEICLRAEAFIGWGILDEEAFARVKA*	hallmark_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0057	shell	direct	high	896	0.999	GCA_013276705.1_01054
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	43736	43948	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	31642	31854	GCA_013276705_1_28_71	GCA_013276705_1_28_71	+	65124	.	cd12935	LEM-like domain of lamina-associated polypeptide 2 (LAP2) and similar proteins. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and postmitotic reassembly. Some of the LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are nonmembrane nuclear polypeptides. All LAP2 isoforms contain an N-terminal lamina-associated polypeptide-Emerin-MAN1 (LEM)-domain that is connected to a highly divergent LEM-like domain by an unstructured linker. Both LEM and LEM-like domains share the same structural fold, mainly composed of two large parallel alpha helices. However, their biochemical nature of the solvent-accessible residues is completely different, which indicates the two domains may target different protein surfaces. The LEM domain is responsible for the interaction with the nonspecific DNA binding protein barrier-to-autointegration factor (BAF), and the LEM-like domain is involved in chromosome binding. The family also includes the yeast helix-extension-helix domain-containing proteins, Heh1p (formerly called Src1p) and Heh2p, and their uncharacterized homologs found mainly in fungi and several in bacteria. Heh1p and Heh2p are inner nuclear membrane proteins that might interact with nuclear pore complexes (NPCs). Heh1p is involved in mitosis. It functions at the interface between subtelomeric gene expression and transcription export (TREX)-dependent messenger RNA export through NPCs. The function of Heh2p remains ill-defined. Both Heh1p and Heh2p contain a LEM-like domain (also termed HeH domain), but lack a LEM domain.	MALYRDLKSGVIIASECILGGNWVPVEKQVIEEEHLTVVELKSSLDELGIHYEKNAKKSELLSLYKSHKG*	mmseqs_cdd	nonviral_gene	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0058	shell	direct	high	212	0.995	GCA_013276705.1_01055
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	43952	44392	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	31858	32298	GCA_013276705_1_28_72	GCA_013276705_1_28_72	+	65124	.	PFAM:PF09355.9	head-to-tail-adaptor	MGNFAKIEDLELLWRSLKFDERARAEALLEVVSNSLRVEAKKVGKDLDDMVAESVSFASVAKSVTVDIVARTLMTSTDHEPMTQVAESALGYSFSGSYLVPGGGLFIKDTELKRLGLKKTQRYGAIEIYDLPKRNPCHFNRQGGNW*	hallmark_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0059	shell	direct	high	440	0.998	GCA_013276705.1_01056
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	44337	44675	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	32243	32581	GCA_013276705_1_28_73	GCA_013276705_1_28_73	+	65124	.	PFAM:PF10665.8	Minor-capsid-protein	MTYLKGIPVILIDKVEIGNDDFGHPIHRDVEIEVQNVLVAPTSSEDVINQMNLTGKKAEYTLGIPKGDTNKWENREVKFFGRKWRTIGFPQEGIESMIPLSWNRKVMVEVYE*	hallmark_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0060	shell	direct	high	338	0.997	GCA_013276705.1_01057
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	44668	44904	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	32574	32810	GCA_013276705_1_28_74	GCA_013276705_1_28_74	+	65124	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MSDMKFQLNSAGVSALLRSSEMQGILREKGQGIASRAGEGFELTVSPGQKRANAKISTTDIKSMARNKKHNILLKAMR*	hallmark_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0061	shell	direct	high	236	0.996	GCA_013276705.1_01058
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	44901	45236	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	32807	33142	GCA_013276705_1_28_75	GCA_013276705_1_28_75	+	65124	.	PDB:2LFP_A	tail-completion-protein	MIELVIKKFLDGQLDVPSFFEHKPNMPESYVILEKTGSGGSDYVHSATFAFQSYAPSLQKAAELNEKVKRVVENLITVKEVSGVHHNSDYNFTDTETKQYRYQAVYDINYF*	hallmark_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0062	shell	direct	high	335	0.997	GCA_013276705.1_01059
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	45318	45875	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	33224	33781	GCA_013276705_1_28_76	GCA_013276705_1_28_76	+	65124	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MTTASASNVTAAKPKIGGAVSTAPAGTDLPTNAKTDLNPAFKTLGYISEDGLTNENSPESEEVKAWGGQTVLSSQTEKKDTFKYKLIEGLNIEVLKEVYGPDNVSGTLETGITVKANGKELPEHSLVIDTLLKNGYVKRVVIPRGKVSEIGEISYKDGEPIGYELTITALPDNSENTHYEYIQGA*	hallmark_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0063	shell	direct	high	558	1.0	GCA_013276705.1_01060
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	45881	46156	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	33787	34062	GCA_013276705_1_28_77	GCA_013276705_1_28_77	+	65124	.	.	hypothetical protein	MSKTFKGETKLGFKFEISERRLNNYELLELIGEVDEGQGQVFPKVVKLLFGDEQAKAFKDHLREEDGIVPNDKMADEIKSVFESVNGLKKS*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0064	shell	direct	high	275	0.996	GCA_013276705.1_01061
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	46171	46554	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	34077	34460	GCA_013276705_1_28_78	GCA_013276705_1_28_78	+	65124	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MNLDEDALICDLAETYQIYDYKQLPLNQVAVFAYGLRDDSRIKQIMSDQIVSLEITLLANIVDRLSISLWLQTKDGQKGVNRPASIAGMLTKNNKEERDERDYLVFESGEDFENYRKALLAKTGGEE*	mmseqs_cdd	nonviral_gene	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0065	shell	direct	high	384	1.0	GCA_013276705.1_01062
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	46554	49019	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	34460	36925	GCA_013276705_1_28_79	GCA_013276705_1_28_79	+	65124	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATELGKAYVQIIPSAKGISGMIQKEMGGEVASAGVSAGESLGSKMMGAISGIIAAAGIGKAIGASINEGAALQQSLGGIETLFKDSADKVKGFANEAYKTTGLSANAYMENVTGFSASLLQSLGGDTDKAAETANMAMIDMSDNANKMGTSMESIQLAYQGFAKQNYTMLDNLKLGYGGTKQEMQRLLADAEKLTGVKYDINNLSDVYSAIHAIQENLDITGTTAREAATTFTGSFESMKAAAQNVLGKLSLGEDIQPALQALMETTSTFLFGNLIPMIGNILKQIPNLILGGIKGVFSGIFGEGLGSIMGGIVTALGSAFLAFKAFSVVSGLLSGIPAVLTTIKTAVTGLFTAMSANPIGIAIAAIAALTAGLVYFFTQTETGRQIWSSFVAWIKQAWQGIADFFVNLWSGISEGASTLWDGVVTAWNAVVTFFSDLWVSIQEAASVAWTAITTAVMAIVQPFIDGFMNIWNNISDGLTQIWEGVKMIFQGAWEFIKSIFLGAILIIIDLVTGNFDQLSADLSLIWEGIKNSVSMIWEGIKTFFSGIVDAIVGYGIAIFENFSTTLSTIWKGLSAAGKAIFDGFAQILSNIWSTIKSVASSAWEGLKSTVLGLIDGLVQGAKNAWESMKQGVRDLVDKVTSIFDGIKNIDLWEAGKAILDGFLNGLKSAWSAVTDFVGGIASWICDHKGPIEYDRKLLIPAGNAIMQGLNRGLQDRFKGVKKSVSGMAGEISNAFSNDDFGLSGTPTIAKNIEASLAMPSAQIEAKDSQTVSEIAILRASMEKILTAILEKPSDTYLDADKISMSVYQRQGAIYAREGM*	hallmark_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0066	cloud	direct	high	2465	1.0	GCA_013276705.1_01063
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	49019	49717	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	36925	37623	GCA_013276705_1_28_80	GCA_013276705_1_28_80	+	65124	.	PDB:2X8K_A	Distal-Tail-Protein	MFYMIINGFNTSTIPHCVVTDFGQVEAAKPRVAEDANLYGANGSYRVLDGGYESYERTFSFYIPKLLDVSTIVEKFQPKDNVLEFSYQLGSVFYADFIGATYSPHGMHAWKLELKLSMQPFRYQKNLAPLIFTASGNINNPGSVYSEPVIEIEGDGDISLTIGRTTMHLTIRRKVTIDCRHKKQNIYNADGVVQNTLRKRGGFFELAVGNNGLVFTGAVRKVTVRPNWRYIL*	hallmark_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0067	persistent	direct	high	698	0.999	GCA_013276705.1_01064
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	49714	54294	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	37620	42200	GCA_013276705_1_28_81	GCA_013276705_1_28_81	+	65124	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTEGNRPLNESYNDEIVHLGNNTYQLTFRFPTSDPKWELLKEETFLTADDLHGEQDFYIFEVEKQQGYIQVYANQVISLLNNYIVSSIEVDRVSGTRVLSAFAGSITRANPFSFFSDIDDRHTLNIKDKNAMEVLAKDKHSILGQWGGDMVRNGYNLRLLKNGGSENESLFMYKKNLSSYQHKTSTKSLKTRITFKTTVKGEGENAVDHDYMVVIDSPLLGNYSQIYEDVVEVNDQDVTDEASLIAYGKQYFRTSMCDMLEDNLEISVVGQSDVAVQMFDVVSIYHEWYGLDVRKKITKYTYSPMAKRLKSIGFGTFQSSLANAIGGIVNDAVLNESRNLHQIFEERLKKEIANADRAFDAEFTKREKAITDAIELAKAKAEEVKQEVSDTINQRFNSFHDEPLRESRRKAEEALRQAGASSSLAQEAKRIGLDSVARLEAFKSQTRSAQTALSGDLNLLKQTVTNDISSKQRQLKTDISKQVQALGQIKNDLAGVRSSQARYEETTKGRLTALTNRMEGKANKSEVRQTAETLTSQIDRIQEESSTRISTMTSRFNQRADALDAGVRRLTEGLRTKADISSLNVTAENIRQSVKSLETDTQNKLNQKLSTAEFEVRAGSIRQEILNATKDKADKTLIRAEAGKLREEFSNMQVGGRNYYRDSEKIQQSRFGFAFDNLDLYLSKSDIGTTWTLSFDYKLDEVDGSFPFHMSHSGANGFGIEGQKKFTATREWQRFRLTGSVFFKEDAPSESKLQMTLFNSDLGYGGPIFIRRIKLEKGTLATDWSPALEDTNGLITQAKASFERTAQELRTDLSAVQAYVAQDGQRQESLQRYTREESARQARTVREQISRDYVGKSSYQEDVEGIHRRIEGVKTSANREITSQIASYRQSADGTFRDISSQITTYKQDMTRNIANLSHQLAGKVETTDFQRVKETSELYERILGNSENGIANTIARMAMTNQLFQVEVGKYSVSGPNLIKNSDFKNDTNKWVSTQNLGRLVKHSFYHNGQKNLMRLSNATKNKNFLSSHRFNLERNTDYVLNFRGFNNSALASYDVYILGRRAGESDGFTIFKKVVSSKKLSTSRCEDVSVTFNSEEMDNAYIRFENNGSSSGTADLYITEVDLYKGYKPRTWQPHPEDAVADANKKLEATQTKMTQLAGSWLVQNINSAGDLISGINLGANGHNRLSGKLTHITGETLIDRAVIKSAMVDKLKTANFESGSVTTAVLAAEAVTADKVKFDHAFIRKLIANDAFIGELTSKRIFATKIESVVNRSTFLEAYQGQIGGFTIGRFAQGRGRWISGVNQFSVGMGNGEGGSYNGENTAFWANWGYSWNSPGPNAWYVTTLGNMHCRNGANFHGRVDFSNSSRANFYGNTTFSRSPVFLNGIELGSKDVFGDGWNPKGGRNAVVWWNQVGSGSVKYWMEQKSDRRLKENITDTAVKALDKINRLRMVAFDFIESKKHEEIGLIAQEAETIVPRIVSRDPENPDGYLHIDYTALVPYLIKAIQELNQKIEKMENRHG*	hallmark_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0068	shell	direct	high	4580	1.0	GCA_013276705.1_01065
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	54287	54493	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	42193	42399	GCA_013276705_1_28_82	GCA_013276705_1_28_82	+	65124	.	.	hypothetical protein	MDNHTIDKLVAESLVDRLADIELNYAHLNVHHRLALAELQAFKAVLEYDPALKELFDETQAKMKGNKE*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0069	shell	direct	high	206	0.995	GCA_013276705.1_01066
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	54490	55023	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	42396	42929	GCA_013276705_1_28_83	GCA_013276705_1_28_83	+	65124	.	PF07104.11	Protein of unknown function (DUF1366)	MNYEVAINPYLKGGENVTVVAIKMENKGRYSYEQCELPGDHTQDSEDALIQAVLELVRTELDPTSAIVKNQEQLAKTTEALERANQLMDGMQKVNLQNAQDIEDILARLEELEAQGESDQEETDEDTPQVTDTENQAEEAQPTPAVEDKKESEKEDDISETTNQESPSEDNGGSSNE*	hhsuite_tools	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0070	persistent	direct	high	533	0.998	GCA_013276705.1_01067
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	55016	55168	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	42922	43074	GCA_013276705_1_28_84	GCA_013276705_1_28_84	+	65124	.	.	hypothetical protein	MSKITLDQAKIDMYINLLERGAVDFSWVHKRWKDRVRKELKRRGLSHLAN*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0071	persistent	direct	high	152	0.993	GCA_013276705.1_01068
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	55179	55457	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	43085	43363	GCA_013276705_1_28_85	GCA_013276705_1_28_85	+	65124	.	PFAM:PF04531.12	holin	MTEIEHLLIRFLFSLIPVVVLYFSMKDRATKQENRMTAIEKDIENLREFRMSANKRLDNHDEQNKAILVLAEQVKSLGEDVRELKTLIQSKQ*	phrogs_hmm	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0072	persistent	direct	high	278	0.996	GCA_013276705.1_01069
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	55473	55949	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	43379	43855	GCA_013276705_1_28_86	GCA_013276705_1_28_86	+	65124	.	PFAM:PF14606.5	neck-protein	MVCNLNMTNLRQIDGGHLIKQGDLASTFGFALLDEDYQVISSLEGEEALISLTKEGYQWKKQVTVTGQGVSFHLDAILPIGSYRLEITAGGYVFPSDKSVHIKIVASDKELVTEEVHALKELDIAKEVEKQLAGRTVGESPVGQELPDLLFYYNLGKV*	phrogs_hmm	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0073	persistent	direct	high	476	0.998	GCA_013276705.1_01070
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	55956	56276	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	43862	44182	GCA_013276705_1_28_87	GCA_013276705_1_28_87	+	65124	.	PFAM:PF12789.6	tail-fiber-protein	MDTTKLTAFAQAVGEDNKKVNEELKTKVSTSDMNQAIAQAKSEVKAEILGEGTPENLDTLKEIAEKITSMGQDENSALLGKVTEVSGRVDQIANLDLVATYNAAKA*	phrogs_hmm	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0074	persistent	direct	high	320	0.997	GCA_013276705.1_01071
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	56273	57064	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	44179	44970	GCA_013276705_1_28_88	GCA_013276705_1_28_88	+	65124	.	6V8I_BM	Distal Tail Protein, gp58, Tail-Associated	MSAMSNLENLARAIGEDVKAIKEDSELKDREVKKRLDTLESRPKVHPETLVTKAELEEKGYLTSHQDLSTYAQKWELYNDIPIKARISALENRPSFDTLTPTQRDSLKGDNGHSLNASVRIEGSYKNGSTSRLNLFADVFYDGEAVTSGYTLDYYYRGFGYTNWRSLRNQTPDSAGKFGTWSASQRSGGWFEVRIEVNYRGLRASAFTHLDNVNDGEQGRSGVPGQNIVNQNGSQALNYWAGTQEQYDAITTKDPHTIYDIFK*	hhsuite_tools	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0075	persistent	direct	high	791	0.999	GCA_013276705.1_01072
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	57073	57390	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	44979	45296	GCA_013276705_1_28_89	GCA_013276705_1_28_89	+	65124	.	.	hypothetical protein	MRDRVRIMLGSREIVKRYIGDRLVWSSGPSLLLEVLNTRMWQYWGGYNIDIKGNDIKVAAIRYVQLNNSRLIRIQADMYNRGVIYLTGTNLREYIGTVNVKFYRE*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0076	shell	direct	high	317	0.997	GCA_013276705.1_01073
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	57405	57734	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	45311	45640	GCA_013276705_1_28_90	GCA_013276705_1_28_90	+	65124	.	PFAM:PF09682.9	Phage-holin	MTQFNEFIIAFATGFLAVAVGSIVKMVKDYLLRKGGEKAVIIAEILAKNAVNAVEQVAAETGYKGDEKLAQARTKIRAELTKYKISMTDKDLDTFVESAVKQMNDAWRE*	common_virus_hmm	common_virus	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0077	persistent	direct	high	329	0.997	GCA_013276705.1_01074
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	57737	58693	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	45643	46599	GCA_013276705_1_28_91	GCA_013276705_1_28_91	+	65124	.	COG5263	Glucan-binding domain (YG repeat)  [Carbohydrate transport and metabolism]. 	MDIDTSRLRTGLPQVGVQPYRQVHAHSTGNRNSTAQNEADYHYRKDPELGFFSHVVGNGRVMQVGPVNNGSWDVGGGWNAETYAAVELIESHSTKEEFMTDYRLYIELLRNLADEAGLPKTLDTDDLAGIKTHEYCTNNQPNNHSDHVDPYPYLASWGISREQFKQDIESGLTIETGWKKNDTGYWYVHSDGSYPKDKFEKINDTWYYFDGSGYMLANRWKKHTDGNWYWFDQSGEMATGWKKIAEKWYYFDVEGAMKTGWVKYKETWYYLDGKEGAMVSNAFVQSADGTGWYYLKPDGTMADKPEFTVEPDGLITTK*	mmseqs_cdd	nonviral_gene	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0078	persistent	direct	high	956	0.999	GCA_013276705.1_01075
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	58870	59076	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	46776	46982	GCA_013276705_1_28_92	GCA_013276705_1_28_92	+	65124	.	.	hypothetical protein	MLKNTKQPQYFKSFLLGMTAIVLPVFSFNQNISKVKADTVPDWKKVKSDYKKSTMGIQKEVMKFGYRE*	.	hypothetical_protein	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0079	persistent	direct	high	206	0.995	GCA_013276705.1_01076
GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote	cenote	CDS	59060	59491	GCA_013276705.1	VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705.1_VMLN01000033.1	GCA_013276705.1|VMLN01000033.1	GCA_013276705_1_28	GCA_013276705_1_28@C2	46966	47397	GCA_013276705_1_28_93	GCA_013276705_1_28_93	+	65124	.	COG5346	Uncharacterized membrane protein [Function unknown]. 	MDTENKDLIEVNNIVDEVERLPHEQRQVVLQKLEIYQGDLPHPDILKGYKELYPDAAQKIIDNGIAESQHRREMEDKYLSGNIASHKLGQLFGFLIALVVIIGGIYLIATDKQIAGSVLTGTTALGLIGLFTGNNQNKNKDKE*	mmseqs_cdd	nonviral_gene	C2	47397	12095	59492	GCA_013276705.1|VMLN01000033.1@region_12096_59492@tool_cenote_CDS_0080	persistent	direct	high	431	0.998	GCA_013276705.1_01077