core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_013277255.1|VMMK01000002.1@region_1_1232@tool_cenote	cenote	CDS	1	1230	GCA_013277255.1	VMMK01000002.1	GCA_013277255.1|VMMK01000002.1	GCA_013277255.1_VMMK01000002.1	GCA_013277255.1|VMMK01000002.1	GCA_013277255_1_14	GCA_013277255_1_14	2	1231	GCA_013277255_1_14_1	GCA_013277255_1_14_1	-	1232	.	PDB:3GUD_A	Neck-appendage-protein	EKIQQSPFSFGFVFDNLDPYLSKSDIGTTWTLSFDYKLDEVDGSFPFRMMHNGGNGFGIEGQTKSTATREWQRFRLTGPVFFKEDAPSESKLQMILFNSDLGYGGTLFIRRIKLEKGTLATDWSPALEDTNGLITQAKASFERTAQELRTDLSAVQAYVAQDGQRQESLQRYTREESARQARAVREQISRDYVGKSSYQEDVEGIHRRIEGVKTSANREITSQIASYRQSADGTFRDISSQITTYKQDMTRNIANLSHQLAGKVETTDFQRVKETSELYERILGNTENGIADKVARMAMSNQLFQVEVGKYSVSGPNLIKNSDFKNDTNKWGSTQNLGRLVKHSFYHNGQKNLMRLSNATKNKNFLSSHRFNLERNTDYVLNFRGFNNSALASYDVYILGRRADESDGFT	hallmark_hmm	common_virus	NaN	.	0	1232	GCA_013277255.1|VMMK01000002.1@region_1_1232@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_013277255.1|VMMK01000003.1@region_1_1226@tool_cenote	cenote	CDS	1	1224	GCA_013277255.1	VMMK01000003.1	GCA_013277255.1|VMMK01000003.1	GCA_013277255.1_VMMK01000003.1	GCA_013277255.1|VMMK01000003.1	GCA_013277255_1_25	GCA_013277255_1_25	2	1225	GCA_013277255_1_25_1	GCA_013277255_1_25_1	-	1226	.	PDB:3GUD_A	Neck-appendage-protein	EKIQQSRFGFVFDNLDPYLSKSDIGTTWTLSFDCKLDEVDGSFPFHMLHGGANGFGIEGQKEFTATREWQRFRLTGPVFFKEDAPSESKLQMTLFNSDLGYGGTLFIRRIKLEKGTLATDWSPALEDTNGLITQAKASFERTAQELRTDLSAVQAYVTQDGQRQESLQRYTREESARQARAVREQISRDYVGKSSYQEDVEGIHRRIEGVKTSANKEITSQIASYRQSADGTFRDISSQITTYKQDMTRNIANLSHQLAGKVETTDFQRVKETSELYERILGNTENGIADKVARMAMTNQLFQVEVGKYSVSGPNLIKNSDFKNDTNKWGSTQNLGRLVKHSFYHNGQKDLMRLSNATKNKNFLSSHRFNLERNTDYVLNFRGFNNSALASYDVYILGRRAGESDGFT	hallmark_hmm	common_virus	NaN	.	0	1226	GCA_013277255.1|VMMK01000003.1@region_1_1226@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	49	471	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	50	472	GCA_013277255_1_48_1	GCA_013277255_1_48_1	+	18413	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MTPKFRVWDSVEKKFVEHFFITDNGLICNMEKPTSDSKLLIPIEKSELILMQSTGLKDKNGVEIFEEDVVSRNSGMPSVVKFGKWIYEEDFGYKIKNIGFHLNSSYDDEWFQAMDYEDIRKNYEVIGNIYENPELLEDKE*	mmseqs_cdd	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0001	shell	direct	high	422	0.998	GCA_013277255.1_01745
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	468	704	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	469	705	GCA_013277255_1_48_2	GCA_013277255_1_48_2	+	18413	.	PFAM:PF11753.7	nucelotide-kinase	MNPEIIDNINKPSHYQGANGLEAIDVVHNFVGNLSGASAFFWGNAIKYMLRFQKKNGLEDLKKARKNLDWLIEEMEHE*	common_virus_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0002	shell	direct	high	236	0.996	GCA_013277255.1_01746
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	697	876	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	698	877	GCA_013277255_1_48_3	GCA_013277255_1_48_3	+	18413	.	PFAM:PF04936.11	host-nuclease-inhibitor	MSEYALYDGDTFITMGTLAEISKETGIAERMLKYYTFASTQKRHPNGRAVIKIEVDDEG*	phrogs_hmm	hypothetical_protein	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0003	shell	direct	high	179	0.994	GCA_013277255.1_01747
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	866	1096	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	867	1097	GCA_013277255_1_48_4	GCA_013277255_1_48_4	+	18413	.	PDB:2FJR_A	Repressor-protein-CI	MKDKLNPRQASRFAFLLKQKRKERKLSQEKLAAKLGYSRYLIAKWEKEESVPNIYNVEDICTYFAFPADIILGSRA*	common_virus_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0004	shell	direct	high	230	0.996	GCA_013277255.1_01748
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	1167	1595	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	1168	1596	GCA_013277255_1_48_5	GCA_013277255_1_48_5	+	18413	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQIELLDIIDEKKTRKEAIKVLKKYSRLRRIAGEEYAPKITISYSLEPKSSSGQTSKQVESMVLRRVSAQQDLELIAKAINNLSDMEYTRILIERYCRKKRREDYSIYSELGYSSSEYYRILNKALLEFAESYQASNLLVYK*	mmseqs_cdd	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0005	persistent	direct	high	428	0.998	GCA_013277255.1_01749
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	1917	2459	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	1918	2460	GCA_013277255_1_48_6	GCA_013277255_1_48_6	+	18413	.	CDD:cd01192	site-specific-tyrosine-recombinase	MNIVEPIRDKDDIQAMKDYLREWNERNYILFLFGINSGLRVGDILKIRVKDVQGWYIKLKEQKTGKKKKIKMTKTLKREVREYIQNKPHHHFLFQSRVGKNKPLDRRTVDWILKVAASECGIENIGTHSMRKTFGYHYYKKTKDIAMLMSLFNHSSPAITLRYIGIRQDQQDKAMSNFGL*	common_virus_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0006	shell	direct	high	542	0.998	GCA_013277255.1_01750
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	2673	2969	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	2674	2970	GCA_013277255_1_48_7	GCA_013277255_1_48_7	+	18413	.	PDB:5H0M_A	HNH-endonuclease	MIEVSTREERNQFYNSSEWRTIRRQALKRDHYECVWCRDEGKVTTTNLEVDHIKELEFYPEFALDIDNLRTLCKACHNKRHDRFDKNDRNFRKDEWWG*	common_virus_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0007	.	unmatched_CDS	none	0	0	.
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	3088	3426	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	3089	3427	GCA_013277255_1_48_8	GCA_013277255_1_48_8	+	18413	.	PFAM:PF05119.11	Small-Terminase	MEEYSEKNIKELENQLLSKIGYFSPRKKDAIQYEKVNRYLYLVRLLYELKAKLHEDGLVITVHNGQQRFQKANSLIKEINTTSNQLLAIERSFDFDVENSPVEKATSGSDLL*	hallmark_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0008	shell	direct	high	338	0.997	GCA_013277255.1_01751
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	3423	5063	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	3424	5064	GCA_013277255_1_48_9	GCA_013277255_1_48_9	+	18413	.	PFAM:PF03354.14	Large-Terminase	MISHPLVDDYIKMAENGEVVVNKERKLLFKIIKEKIYPRDDLYFDNDLIDKFIRFAEKNFFPLAKYQLFLTPFIFLFRKVDEEPHFDEYLYTLARGGGKNGFMSARSSFFISPIYPIRDYDVTITANSEKQGKVSFEEVYETIQRRGLEDHFYLTKMSITGRANNSVFSFRTNNPKTMDSARDGCLEFDEIHQFENDKAVKVQRSGLGKIAHVRTFYNGTNGYVREGFYDKLIEKSMQILNGEVDDFRLFPFICKLDSADEVDDMKNWPKANPMLDESTPYAKRLLARTKADYDDLELEPSGRQEFMTKRMNLPEADLEKDVTTRERLLACLRSPGIDLLGKSCVAGFDYASIRDFASVGLLFKNGDEFIWKQHSFARKAFLKAFKLKAPIQEWADRGLFTIVDGPSIDPRLLVEKLNEWSKFYQIELVCADGFRMDLLKPLLEEAGFEYEFLRNPGAIQSKVAPIIEDGFANERFVFENDNSMIWYTDNTYVKEDKDGNKRFLKKEPVRRKTDGFHALIAALYKRELVHESNVGEFLDMLEDWEF*	hallmark_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0009	shell	direct	high	1640	0.999	GCA_013277255.1_01752
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	5165	5899	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	5166	5900	GCA_013277255_1_48_10	GCA_013277255_1_48_10	+	18413	.	smart00910	The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	MNRQEQLLELENEIAKANKEIDNLKSGMTPGQMISVIFLFISIFMIFILSGFFVKFFGFILAFLSILGIIGASNQKSERVSWLEQCCIDLECEIEKKKQEWLEEDIKPKSDSGKKTDNKQEFTDKEIESGLVWKRRFTVVGTFYRDSGEVPFYKLQKDLDHLETVKTNNFQFKPEPDNPYHGNAIKVIVEGYFVGYVPRELANQLIHYMEPSKYRTEGYVRISKVSLKRGKEIKYAVVPKIYTK*	mmseqs_cdd	nonviral_gene	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0010	cloud	direct	high	734	0.999	GCA_013277255.1_01753
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	5980	7128	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	5981	7129	GCA_013277255_1_48_11	GCA_013277255_1_48_11	+	18413	.	PFAM:PF04860.11	Portal-protein	MGFLNLFKRDAPDVGFDFEELERMLGCLQLKSLAIDKSAEFVARIFAKSEFRYMVENHHVTSDWDYILNVRPNKNESASEFWQKVIYRLLTKNEVLIVLSDDKQLLVADAFTRRRYALYDDTFEMVSVGDYTFQRKFAMSDVIFLQYNNNRLQEYVSDLFSDYEKLHTRLVEALARNNQIRGVLATKANGTFDEDKRKKLQRYADNLFKSFTSKTVAIVPTMDGVEYSELTNTVGTTNLSVEELKKLRRQFDDEVADILGLPTALMHGDMADLSNSQKMFNSYCYESLVKKVGDALNHAMVSSAGYANQKKFVIFGEGGLDKFALAENIDKLISSGAMTRNEVRLELGLEAVPGGDSFLITKNYQGENEIEKGGNEDDNHSD*	hallmark_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0011	shell	direct	high	1148	0.999	GCA_013277255.1_01754
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	7109	7831	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	7110	7832	GCA_013277255_1_48_12	GCA_013277255_1_48_12	+	18413	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MTIIQIKGAIVSNDDRWFYDWLDMDATAPKDIVLPTTGEDVEVHINSGGGDVYAGSEIYTALRAYQGHVTVKIVGIAASAASVIAMAGDQVEISPTAQIMIHNVSAGVRGDHKALLHEAGVLEGFNKSIASAYMDKTGKALDDLLELMDRETWFDARSAVNHGFADKVMFESQEAPVLVASQTPVIPRDFIEKIRTAMTPDLELLADLVRDRLNNNSSILEDKKKEDKTTEPVGLGRFPF*	common_virus_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0012	shell	direct	high	722	0.999	GCA_013277255.1_01755
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	7851	8966	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	7852	8967	GCA_013277255_1_48_13	GCA_013277255_1_48_13	+	18413	.	PFAM:PF06673.10	Major-Capsid-protein	MMKLGNEFTTARQNFMNAVETGAPMEEQNKLYNEMIEALTDKLQDDAREAARKEIATMNPYDAQLTAEAREFFNNIEKLPPKGIEKLFPQETIDRIFEDMVAARPLLQHIGLRNAGIRLKFLKSSRTGQAVWGKINAEIQGQLKQEFAEEEAIQSKLTAFVVIPKDSEKFGPAWLQSYVSIQITEAFAAALEAGYLNGDGDNKPIGLSRTLTGTAESEKVTYAEKQAQKKPLTFADSATVVKELTEVYKYHSTKADNTTPVAVEGNLVMVVNPVDAWDVKKQYTSLNAQGVYVTAMPYNLILVESVAQASGKVTTFVKGRYDAFVGGGIEFGRFTETYALEDLNLYTAKQFAYGKAHDEKTAAVWTLSIAK*	hallmark_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0013	shell	direct	high	1115	0.999	GCA_013277255.1_01756
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	8980	9270	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	8981	9271	GCA_013277255_1_48_14	GCA_013277255_1_48_14	+	18413	.	CDD:cd08054	Head-Tail-Connector-Protein	MEIEAKLHSLLIPFKERMRIFHSGEDANLSRMLESSQMVITRLVGSGNIHDHQIRELILERARYVYNDQVEFFYENFKADILALSLDKIEMEDSDD*	hallmark_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0014	shell	direct	high	290	0.997	GCA_013277255.1_01757
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	9263	9451	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	9264	9452	GCA_013277255_1_48_15	GCA_013277255_1_48_15	+	18413	.	.	hypothetical protein	MIKVLKEFYDLKEGVLRQVGERFEATEERFAELKEHLPDYVELEKSSRSRSSKEVVSVNEEE*	.	hypothetical_protein	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0015	shell	direct	high	188	0.995	GCA_013277255.1_01758
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	9438	9827	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	9439	9828	GCA_013277255_1_48_16	GCA_013277255_1_48_16	+	18413	.	PDB:2KZ4_A	head-closure-knob	MKRSEGPSYRYKKPESQNGDLRTPLTFYTSKIKKGVDGRDVSYEKAFYTMGQTYSPSMKDVEIATGKAMKAKMTLKIRDPLTDYQPENRHFVEVGDIRLVGKKWQIIDVRPDFANRDFLIVLIGGGRDV*	hallmark_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0016	shell	direct	high	389	0.997	GCA_013277255.1_01759
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	9820	10218	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	9821	10219	GCA_013277255_1_48_17	GCA_013277255_1_48_17	+	18413	.	PFAM:PF04883.11	tail-component	MSSGANLKGFDDILRNIEARLGEPVVRRKVNRALKETVEEFEPTFKRAMAVYADTGKTVGAVVHGNVTGTSSGVPMVKLGFKSPRWTIIHLNEFGYAKNGHPRGFGVMRRFFEASKPVFKSKVGMKLKQEFL*	hallmark_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0017	shell	direct	high	398	0.997	GCA_013277255.1_01760
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	10218	10598	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	10219	10599	GCA_013277255_1_48_18	GCA_013277255_1_48_18	+	18413	.	PFAM:PF05657.10	tail-component	MIKDKLTELYDALEEDESLSGISIKSFERPESLGDGETSIVIIPVGPPMQTAHGSNTSLAKTFLYQINVESTNRVECKELQGRIEKIMEEQGFYQTEGGLEQWIPDIKRYVDVRTYRGMSALYEKY*	hallmark_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0018	shell	direct	high	380	0.997	GCA_013277255.1_01761
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	10615	11211	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	10616	11212	GCA_013277255_1_48_19	GCA_013277255_1_48_19	+	18413	.	PFAM:PF04630.11	major-tail-protein	MTVKGTALIGLKSVTIRVHDGQTPTVGQNLFTLEGKDNEGATQTARVTGLSSDPVKTYGSNVAYHVSNRGVGDVKVEMGLLDVPLALYTNALGYGDDDGIYYFGADTVAKNVSILIESNTADGEPVYYGFYKGQLSMDAIDFETLKDKANELATTSVNFTATASSDVATKGRYGAIVYGSDAEKLKKLKGQLNITAAG*	hallmark_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0019	shell	direct	high	596	0.998	GCA_013277255.1_01762
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	11257	11550	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	11258	11551	GCA_013277255_1_48_20	GCA_013277255_1_48_20	+	18413	.	.	hypothetical protein	MAKVQFTIKNDKGEDVLKKSKEITTRDYRDYLVMNESLTSDLSEVEKLDKQLGFIASLFDDVTVEQLLEYTDFAKVISIFTAIYAHLVGDVDPKEKS*	.	hypothetical_protein	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0020	shell	direct	high	293	0.997	GCA_013277255.1_01763
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	11799	12029	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	11800	12030	GCA_013277255_1_48_21	GCA_013277255_1_48_21	+	18413	.	.	hypothetical protein	MSRKEKACRRYWFWFTIFILYLAFGLYCICTNFVDIFGMLLLSPFIFASLPLYAYLFLGMFIWAFMNMAMDDFYKE*	.	hypothetical_protein	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0021	shell	direct	high	230	0.996	GCA_013277255.1_01765
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	12086	16261	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	12087	16262	GCA_013277255_1_48_22	GCA_013277255_1_48_22	+	18413	.	PFAM:PF10145.8	minor-tail-protein	MASGTPLGQMYIELGLDVSKFSPTLTGAKNAVKYFQNNVRSLDSTLKGNEKNASLLQAKYKTLGQAIDSQRKVLDEMKKSFDKLEPGTAKFDKAAADIQRENAKLAVMEGQLRGVEKALQDVGRENSWSGKIDALSEKFAKGGEKLRAMGDAMKPVSAALLAGFTLSTKKAIDFESQMNTTKSLLADTIPTADELNSTTQKLGESSKNWAKQYGISTASINEGMQEIIKKGFDANQTIEAMPAILDAAKASGEDFNTVMNATTNILQQFGLSTQDTERVTNSLTFVANKTAAGFADMGAAMEYVGPVAKNVGMNLEETAAAVGLLSNNGIAGEKAGTALRGALTRLLKPSEQNANAMEKLGFSAEEFRSGAIKLPDILDRIKKNTEGMTDAQKSALIATAFGTEAQTAMNILVDQGGDALRNLANETKGATTYTKDLANELSKSSKNGVERFKSSLEVLQINIGQKLLPLLTPVIDKVNQFIDWLSKAPPAVQSLAVGIGGFLALGYPFLNFLGNGATALSILIKHAGKLEGLLKGGLGLAKLTERAGKLKGLLQGGLGLAKVGSEATVLAEGAGAAASSSSLLSGAIGALTNPIGLLVGGAALLAGGLVYLGHKKDEARIKAEEFGSQLSDTARKELRDFQSKVDDTSTAVANFGTHAGDAEKVSEAFRKLHEEIAAGAEKANQRMEELAKKLGFSDEEIAKMKVKNDQVVSNTDAMANQVSEIYKRHNGDASKFSQEEKEIVLNNQREMIKARIEMMELSGEQQKAALQALNGEIGSLNETQLKHTRDVLKKALDEENQLYKTSKDGLKQLLDAKRIDQETYNKKIQELETNHQQTMEALGTKYYQVMQNLDAKVKARTGQSWNYWEEAKKVLEEYGLSYEVIGQKAAEASQKMGDSHSILAKYTSDMSKETREANDAWSLLVGNIDENNNFVIKSNVKEVIGEATKSAEGWEQLQFIVKNANINSNARVTIAEALVESGKWSTMTLEEKQLIVQNQAGLQAIFDSENHLRIWNSMPAEVKQLLLENTDVMNKAEEASKALYNYDSLTPKQKELLATDENFRKAVARSTDTLTTWNAITPFTKDLKLDPTNVLNNGQLSIDKIMAWNLSNPENKSLNAIDNTSEAVASAKASVNSPKQEKPIDLLAKDQTAGVRNETSAAINAIKQHNPVDILAKNSTSSTVGEVKSVVNSIQDKTVTISARDNASGVLAGIRSWITRVTGDFFTNVFASRHAHGTNYHPGGLAMVNDQRNSTYKELVTLPDGRSFIPEGRDVLLPLPKGAKVLRADKTKRLMREMGVPKYAAGVGIPSDAKFLREMEEAQAKIVVQTKGDTNSKDSDKVVSEIAILRASMEKILTAILEKPSDTYLDADKISMSVYQRQGAIYAREGM*	hallmark_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0022	shell	direct	high	4175	1.0	GCA_013277255.1_01766
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	16261	16959	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	16262	16960	GCA_013277255_1_48_23	GCA_013277255_1_48_23	+	18413	.	PDB:2X8K_A	Distal-Tail-Protein	MFYMIINGFNTSTIPHCVVTDFGQVEAAKPRVVEDANLYGANGSYRVLDGGYESYERTFSFYIPKLLDVSTIVEKFQPKDNVLEFSYQLGSVFYADFIGATYSPHGMHAWKLELKLSMQPFRYQKNLAPLIFTASGNVNNPGSVYSEPVIEIEGDGDISLTIGRTTMHLTIRRKVTIDCRHKKQNIYNADGAVQNTLRKRGGFFELAVGSNGLVFTGTVRKVTVRPNWRYIL*	hallmark_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0023	persistent	direct	high	698	0.999	GCA_013277255.1_01767
GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote	cenote	CDS	16956	18410	GCA_013277255.1	VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255.1_VMMK01000052.1	GCA_013277255.1|VMMK01000052.1	GCA_013277255_1_48	GCA_013277255_1_48@C0	16957	18411	GCA_013277255_1_48_24	GCA_013277255_1_48_24	+	18413	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTEGNRPLNESYNDEIVHLGNNTYQLTFRFPTSDPKWELLKEETFLTADDLHGEQDFYIFEVEKQQGYIQVYANQVISLLNNYIVSSIEVDRVSGTRVLSAFAGSITRANPFSFFSDIDDRHTLNIKDKNAMEVLAKDKHSILGQWGGDMVRNGYNLRLLKNGGSENESLFMYKKNLSSYQHKTSTKSLKTRITFKTTVKGEGENAVDHDYMVVIDSPLLGNYSQIYEDVVEVNDQDVTDEASLIEYGKQYFRTSMCDMLEDSLEISVVGQSDVAVRMFDVVSIYHEWYGLDVRKKITKYTYSPMAKRLKSIGFGTFQSSLANAIGGIVNDAVLNESRNLHQIFEERLKKEIANADRAFDAEFTKREKAITDAIELAKAKAEEVKQEVSDTINQRFNSFHDEPLRESRRKAEEALRQAGASSSLAQEAKRIGLDSVARLEAFKSQTRSAQTALSGDLNLLKQTVTNDISSKQRQLKTDISKQ	hallmark_hmm	common_virus	C0	18414.0	0	18414	GCA_013277255.1|VMMK01000052.1@region_1_18414@tool_cenote_CDS_0024	persistent	ambiguous	low	5	0.003	GCA_013277255.1_01767
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	49	471	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	50	472	GCA_013277255_1_65_1	GCA_013277255_1_65_1	+	18432	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MTPKFRVWDSVEKKFVEHFFITDNGLICNMEKPTSDSKLLIPIEKSELILMQSTGLKDKNGVEIFEGDVVSRNSGMPSVVKFGKWIYEEDFGYKIKNIGFHLNSSYDDEWFQAMDYEDIRKNYEVIGNIYENPELLEDKE*	mmseqs_cdd	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0001	shell	direct	high	422	0.998	GCA_013277255.1_02070
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	468	704	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	469	705	GCA_013277255_1_65_2	GCA_013277255_1_65_2	+	18432	.	PFAM:PF11753.7	nucelotide-kinase	MNPEIIDNINKPSHYQGANGLEAIDVVHNFVGNLSGASAFFWGNAIKYMLRFQKKNGLEDLKKARKNLDWLIEELEKN*	common_virus_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0002	shell	direct	high	236	0.996	GCA_013277255.1_02071
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	725	1078	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	726	1079	GCA_013277255_1_65_3	GCA_013277255_1_65_3	-	18432	.	COG2337	mRNA-degrading endonuclease, toxin component of the MazEF toxin-antitoxin module [Defense mechanisms]. 	MTAKYDYIPEKQDIIWIDFDPSVGREIQKRRPAIVVSRREYSERTGFVAVCPITHGQSRLEEQGLLVPVRSNKVDGSVNPLQLYTFDFRERKAQKITTMDTTSFQKVVQLYNFIFEA*	mmseqs_cdd	nonviral_gene	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0003	shell	direct	high	353	0.997	GCA_013277255.1_02072
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	1062	1277	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	1063	1278	GCA_013277255_1_65_4	GCA_013277255_1_65_4	-	18432	.	PFAM:PF04014.17	transcriptional-regulator	MNTVKTRKVGNSVTVTIPKTLNVPEGQEMFVYKGVDNVIVLAPKIPDPFSGDADLRMEDDFEGVKFLDSEI*	phrogs_hmm	hypothetical_protein	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0004	shell	direct	high	215	0.995	GCA_013277255.1_02073
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	1407	1853	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	1408	1854	GCA_013277255_1_65_5	GCA_013277255_1_65_5	+	18432	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MRLLKRVDVQFTKKNVYDVLESYRSYVRMAGAEYLPKITTTYSFEPKTFTGKNTAAENMVIEHVDAEAEVLEIERAVNCIMDPYVRQVIAKKYMDMKIQLSDKAIYMDLGYSESEFYRMLSRGALEFAEAYRKGKLIVYRKILGDICK*	mmseqs_cdd	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0005	shell	direct	high	446	0.998	GCA_013277255.1_02074
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	2436	2930	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	2437	2931	GCA_013277255_1_65_6	GCA_013277255_1_65_6	+	18432	.	PFAM:PF03592.15	Terminase-small-subunit	MDIGLNQRQKMFASEYLRTGNVYQSAIFAGYSEAYAKTTASKLLENASVKTFIQTETEKMHDENILSAKEALSILSDIARGQRLEEVLMMNPVTGEVDRVTKKADNNTVIKAIAEILKRYPTAKQAEKLELEIEKLKSQIGVDNEQDDKLIEFAKALRGAFDDK*	hallmark_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0006	shell	direct	high	494	0.998	GCA_013277255.1_02076
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	2917	4134	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	2918	4135	GCA_013277255_1_65_7	GCA_013277255_1_65_7	+	18432	.	PDB:5OEA_B	Large-Terminase	MTTNKFTKRQEEVLTRVLNDDFFICGLHGAKRSGKTVLNNMVFMNEIARVRETADRLNIDEPMYILAGTSSTSIQNNIIQELYNMFDIEPKYDKHGAFTLCGVKVVPVYTGSISGLKRARGFTAFGAYVNEASLANEQVFKEIISRCSGEGARIVWDSNPDIPTHWLRRDYINSGDDMIIDFHFKLDDNTFMSDRYRENIKSATPAGVFYDRDILGLWVTGEGVVYRDFSENMFVDNVPEDITKVYAGVDWGYEHFGSIVVIGETSDGSVYLLEEHAHQYKEIDFWVDLAKNIKERYGNITFWADSARPEHVARFQREQLKTFNANKAVLSGIEEVAKLMKTGRFFVVSNKVSKFKDEVYQYIWNEKTGEPVKENDDVLDAVRYAIYSQHSQPKATVRRRSDYGL*	hallmark_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0007	shell	direct	high	1217	0.999	GCA_013277255.1_02077
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	4146	5165	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	4147	5166	GCA_013277255_1_65_8	GCA_013277255_1_65_8	+	18432	.	PDB:5A20_A	Portal-Protein	MYQYLTYPRDGYDEGSLKKDLIYKLITMHNTESSHLKKLKSYYLGEHAILEHTRRNVNAPNYKTVANHAKDIADTATGYFMGNPIKYNNTAEGDIDELLTAFDGAEIDQVDAQNALNMAIYGRAYEYIYAKEGLTELDSTSIDPENTFMVYDDSIERKPLFAVYYYEVKDDTKDTTKYQAEVFTENLHYHMVLRSTDSGTTQSEEATPHNLGQIPIIEYRNNHFAIGDYEQQISLIDAYNSLMGNRVNDKEQAVESILVLYGTQLADTPEDAKVAMKILSEEGLLELPGDSARAEFLKNTLDESATEILRTALKEDIYTFSHVPNLTDENFAGNTSGVK*	hallmark_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0008	shell	direct	high	1019	0.999	GCA_013277255.1_02078
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	5294	5827	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	5295	5828	GCA_013277255_1_65_9	GCA_013277255_1_65_9	+	18432	.	PFAM:PF05551.10	homing-endonuclease	MIKDKMHKHLNQVYYSMLARCYDEKHWAYKWYGKRGIGVSDEFSDVAKFRSWAMQNGVEFGLQLDRIDNDKDYSPSNCRWVPEHTNKRNRSDNVKYKGYILRDYLKKLSEENNISFSTLVYRYYRSIKRDDIIVNDETIDDILLNYKKYDLRQFSKGVDMSGKTIVRDEKGRFVTYY*	common_virus_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0009	shell	direct	high	533	0.998	GCA_013277255.1_02079
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	6057	6494	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	6058	6495	GCA_013277255_1_65_10	GCA_013277255_1_65_10	+	18432	.	PDB:5A20_A	Portal-Protein	MGLEMITKTKEANYKRGLRQRIAIFAHYLGMKQIALESHSIVPQFSRGLPKNLLEISQIVNNLEGKVTNRQLISLLPFVEDPDAELEALEEEKKKNMEDMSMFNKDNTKPEDEVEDEESGVLGEEESQSDLPADGQGRKAGRPVR*	hallmark_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0010	shell	direct	high	437	0.998	GCA_013277255.1_02080
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	6457	7953	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	6458	7954	GCA_013277255_1_65_11	GCA_013277255_1_65_11	+	18432	.	PFAM:PF06152.10	minor-capsid-protein	MDKAEKQADQFDKVYQEAKTYLDKEVNKIFDKFQRDYGLSQVDARQVLKNMKDKKNLNELRKVLEARPNDPNIQRLLADLDSPAYSFRMKRLERLSDDLDRMRESIYRSEKTGSDAFYSDLMKDSYYKATFDLQQQTGLAYGFSGLPESEIKHLQSFSWVGDGSTYSTNIWKNTGKLTSSIKDELLMSLMTGRDTRETAQAIAERFNVGQNDARRLVRTESAFFHNQMELLSYEEADIEKYIFVAVLDKRTSRICQEHDNQVYDRDKAVPGVNCPPMHPWCRSTTVGYDEDADYSKLKRRARNPETGKTELVPADMTYKEWYSKYVAKDVKNEIQDYKKSDQTVSRYNTQKLFSDVSNAWDEIGKGGLSKEQLVGLLKSEYELGNFSSDITKLIGVSSAYIDVSSLATSLVRHGQQYSLDEFMLIKEAVQKPYLILDNSERVEKSIISYVKIPNKDKVIMEAVMVPRDEMLVIHFNKVGIRQVKKNGKNMLTLYKKEK*	hallmark_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0011	shell	direct	high	1496	0.999	GCA_013277255.1_02081
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	8243	8812	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	8244	8813	GCA_013277255_1_65_12	GCA_013277255_1_65_12	+	18432	.	PDB:6B0X_d	capsid-scaffolding-protein	MNEETQTVETVEEQKVPAEPAQQPQDEKKYTDADVDAIIDKKFAKWKSEQEAKENEAKKLAKMNADEKQKYQLDQREQELADREKAIARKELTAEAKAMLSERDLPVELVNVVDLTSAETVSQSVAVLQKSWEQAVQKGVQEKLKGGAPMKQAPVDSDGITKEEFARMGYQSRNELYQKNPELYKKLKG*	hallmark_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0012	shell	direct	high	569	0.998	GCA_013277255.1_02083
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	8818	9660	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	8819	9661	GCA_013277255_1_65_13	GCA_013277255_1_65_13	+	18432	.	PDB:4AN5_F	Major-Capsid-protein	MTARQTKLATMVNPEVMADMVSAKLPKLIKFTPLAYVETALQGQPGNTLTVPAWEYAGDATEVGEGQAISPDQLTTKKTTMTIKKAAKGYEITDEALLSGLGDPLGQATYQLGLAIANKIDDDLVAVAKTATQHVAETPTTLEAIDKALDIFEDEEDAQYVAIINPKDATKLKTDVAKEWTKGSELGANMVVSGTFGEVAGVQIVRSKKVEEGKGFLVKVSPSQTQTDDANKYGAFVIMLKRDVAIETDRDILKKTTVITGDKHYGVYLYDPTRVVKFGE*	hallmark_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0013	shell	direct	high	842	0.999	GCA_013277255.1_02084
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	9672	9854	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	9673	9855	GCA_013277255_1_65_14	GCA_013277255_1_65_14	+	18432	.	PFAM:PF09124.9	endonuclease-VII	MSLLLRRHYIQEEQAGQYSDLENKTLEELKNLAKEAGITGAYKLSKAKIVEVLEDLKSEI*	phrogs_hmm	hypothetical_protein	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0014	shell	direct	high	182	0.995	GCA_013277255.1_02085
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	9844	10032	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	9845	10033	GCA_013277255_1_65_15	GCA_013277255_1_65_15	+	18432	.	.	hypothetical protein	MRFKIKQDFYDWELNVKRLAGEELEITEERYAELADNFASNGVAISDVLEEILPEPEVLEED*	.	hypothetical_protein	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0015	shell	direct	high	188	0.995	GCA_013277255.1_02086
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	10034	10345	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	10035	10346	GCA_013277255_1_65_16	GCA_013277255_1_65_16	+	18432	.	PFAM:PF05135.12	head-tail-adaptor	MSIELLKKLTGEEDTQLLMLLQTRATNLILSETNRTSLTPALSRLIPEVAIELHNRSGAEGEHSRTEGGIAVVYGENGLSTGLLQRIRMHRLARVAGHVFEAE*	phrogs_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0016	shell	direct	high	311	0.997	GCA_013277255.1_02087
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	10326	10664	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	10327	10665	GCA_013277255_1_65_17	GCA_013277255_1_65_17	+	18432	.	PDB:2KX4_A	head-closure-knob	MFLKQSRLKPYPMRRFEKTVTEEGVVKEGYAKEAETVRLELWPASSKLQSEMYGERVNDILNANANKSATIKVKDGVCIDSPTEVTHRVISKKVYTYHQVLELERVRATRGR*	hallmark_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0017	shell	direct	high	338	0.997	GCA_013277255.1_02088
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	10639	11154	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	10640	11155	GCA_013277255_1_65_18	GCA_013277255_1_65_18	+	18432	.	PFAM:PF04883.11	putative-tail-component	MSELRGADRLIAKCRRLASKKTGEDIVLRAVHNAAIKVVQADAKRLAPGNNGELRNSIKTRVKMDGDKAIGEVYTNLHYAPYVEFGTGPKGQASHSGISPEVSVTYRSSPWYVHEDQINVGPYHFQKIGEFYKMYGQPAQPYLYPALRDNQERVSKNISDYVRRKIREQIK*	hallmark_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0018	shell	direct	high	515	0.998	GCA_013277255.1_02089
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	11151	11519	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	11152	11520	GCA_013277255_1_65_19	GCA_013277255_1_65_19	+	18432	.	PFAM:PF05657.10	tail-component	MINIKPVIYKELQKVADNVTDTYPSDWETFPVVIFLEEQNKPGDWFDDQEQKSSIRYKVDIFDDTSTSELAVKINQIFESLGLRRTDCQDVPDPSHLRHKVMRFEGVVDLHSELVFQFRMEN*	hallmark_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0019	shell	direct	high	368	0.997	GCA_013277255.1_02090
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	11522	11935	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	11523	11936	GCA_013277255_1_65_20	GCA_013277255_1_65_20	+	18432	.	PFAM:PF16463.4	tail-tube-protein	MLANGITLSYSETKGSYTKLVGLKEVPEFGIEPEKVENTTLEDKVKKYEFGIGDAGELEYKFSYNNSSETAPYRVLRKAADDKKKLYFEQAYPDGTKVNFEGQVSVKLGGGGVNAVIEFTLKIALQSELEFTDGLGG*	hallmark_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0020	shell	direct	high	413	0.998	GCA_013277255.1_02091
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	11940	12320	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	11941	12321	GCA_013277255_1_65_21	GCA_013277255_1_65_21	+	18432	.	PFAM:PF12363.7	tail-assembly-chaperone-protein	MALPYSIWKISDEKELKLRLSSHQAAKVEEKIGMNLLKIFMPEAGEEFPLPPLKVVLLLIHGALQKYENGYSLEDVYDLYDEYVDNGGDQTTFMTEVLMPLFEVSGFTPRGSKGKKTSKKKMTVVE*	hallmark_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0021	shell	direct	high	380	0.997	GCA_013277255.1_02092
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	12359	12709	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	12360	12710	GCA_013277255_1_65_22	GCA_013277255_1_65_22	+	18432	.	.	hypothetical protein	MFLDIGGKPLDFWDLTVLEIREMIESYNRVKIQERKEKIIDSYRLSQMISNHVSLLLSKDAKVFEFWEYAPELFVEEQQAVEQERQRQELLLHKERMRDFAERHNRKRKEEANGNS*	.	hypothetical_protein	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0022	shell	direct	high	350	0.997	GCA_013277255.1_02093
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	12696	13259	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	12697	13260	GCA_013277255_1_65_23	GCA_013277255_1_65_23	+	18432	.	PFAM:PF04582.11	tail-length-tape-measure-protein	MATLDELKVMIDAEIAPFRKKMKEVENQVKGTSDQVKNATAKIREQSSSIGSAFGKLAKFAGFAILGKKLLDVGMYSTQTALEVSAAMNQIKRQMGESSQSFLKWVNDNANAMNMGVGEATNYGAVYSNLFSGFIKDTNKLSAYTAKMLQTSAVVAEGSGRTITDVMERIRSGLLGNTEAIDFCRTA*	phrogs_hmm	hypothetical_protein	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0023	shell	direct	high	563	0.998	GCA_013277255.1_02094
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	13561	16605	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	13562	16606	GCA_013277255_1_65_24	GCA_013277255_1_65_24	+	18432	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MAMIESTEAFKKFANGQSWQQLDYQTQQQIRLMAILEQATAKYGNTLSNSVNGHISLFKSLMKDAALNLGNSMLPIINAIMPVLNSFAMVLKNVTAKLAEFIALMFNKKATVKDGVGGAVGDMGNAMKDAAGGAGDLADAVDDAGDSAGGLADNLGDSAKNAKKAAKELLGLLGFDEINILQKPKDDDAGGSGGGKGGKGKGGGGGPFKDILPEVELTDMDNQFKSIFDGLGDKLKGLFDLFKKGFDAAFRPEGIERIKTALDQIAKTMGEIATDQRVVNAFNRMVEKIAYALGQVTGSIATIGLGIGVFLAESIANGLGRQKERITRALVALFDNIGNIAEAVGNIAQAFSSAFYDVITSTGAVRIGSAIVSTLLSLTSTIVEVGSKLAGSLFKGFEKVVVTSAPKISSMLQSLLDIVAPIFETIESVVDKFGDGLSRVYDEHVAPAIDSIANAFNGLIDIIQILWEGSWKPFAEFLSNTFGISIETVADLLGGIILEALKLLADTIKLVADGFTAFSDWCKENKEIISVIANVIGTLATAWQGIKFLSWAEQAGGLAGAFELLSGKVSFIVSGIKNLGLALKALTFDKLVSFGETIYLNALYAKDFVVNSGKLIAELGKTALELGKSALAWGVHAAQMGLAAAAEIAQSIAAGVAAAATWALNGAIAVLTSPITLVIAAIAALIAIGVLLYQNWDTVVEFAKTAWQGLCDFISGICQAIGEFFSGLWTKLQEIFEPIGQWFGEKFQQGWDAISNTFSKLGSWFGDRWNESKDALAEANTWLGDKFKSGRGKVNSAFEKVGSWFGDRWKDIKDGVKEADTWFGEKFESAKKKTQNPFQKIGSWFGDRWKNMQDALKEIPNWFKNLFNDAMDNAKNIVKSGIDKLKSFFNFDWSLPKIKLPHFNISGSFSLMPPRIPSFSVDWYARGGVFNSPSIIGVGEAGQEAVMPLERNTGWISILAQKLAERMPANNVPTGYSLPAGDIVIQIAGHEFGRVAIQEINKEHERAGQTLLKI*	hallmark_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0024	shell	direct	high	3038	0.998	GCA_013277255.1_02095
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	16614	16964	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	16615	16965	GCA_013277255_1_65_25	GCA_013277255_1_65_25	+	18432	.	.	hypothetical protein	MAQLTINGVAVKPPKSFQVGIQDIDGETGRNANGDMVRDRITTKRKLDCEWGMMTQGELSQLLHAVSSEFFEVSYPDPMDGQVTKTFYVGDRTAPSYTFTEKFKPWSGAKFNLVER*	.	hypothetical_protein	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0025	shell	direct	high	350	0.997	GCA_013277255.1_02096
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	CDS	16969	18429	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	16970	18430	GCA_013277255_1_65_26	GCA_013277255_1_65_26	+	18432	.	PFAM:PF07902.10	minor-structural-protein	MDALTRRQFDRAMFAKERTLAIRVGDYTSRDIKEASFEYGYIKGDTYKPGGTCAGSGKITFTSIITTFNKLDTLHPEIGLLVGDTYQWVKMGEYFINDIEIDRNRNTTTLELMDGMFKLNREYVTDLHFPAEVREVIQEICLKTGIELANDYFGISAMRYHVEQVPEGKKLSFRDMLSAMTQMIGMSCFFNREGKMEIRDLTESNITINADSYFLHGLTKSEIEYQIAGITCKTDKKPLTVGMKTGRSLELDNVFMTQSALNDLYYKLKNLTYYPYNLNYQGHLLLEVGQWVTIQTNKKETFKVPVLSQSFTFKGGLRGRISADSKAGNDTQYSYEGTITKQIKQQDGIEAKIQAQIEAADAAFDAEFTKREKAITDAIELAKAKAEEVKQEVSDTINQRFNSFHDEPLRESRRKAEEALRQAGASSSLAQEAKRIGLDSVARLEAFKSQTRSAQTALSGDLNLLKQTVTNDISSKQRQLKTDISKQ	common_virus_hmm	common_virus	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_CDS_0026	.	unmatched_CDS	none	0	0	.
GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote	cenote	tRNA	2305	2375	GCA_013277255.1	VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255.1_VMMK01000069.1	GCA_013277255.1|VMMK01000069.1	GCA_013277255_1_65	GCA_013277255_1_65@C0	2306	2376	tRNA-Trp	tRNA-Trp	+	18432	.	tRNAscan-SE score: 59.0	Trp	NA	tRNAscan-SE	.	C0	18433.0	0	18433	GCA_013277255.1|VMMK01000069.1@region_1_18433@tool_cenote_tRNA_0001	.	.	.	.	.	.