core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	296795	297241	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	1	447	GCA_013305725_1_1_278	GCA_013305725_1_1_278	+	2086958	.	COG0102	Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]. 	MNKTTFMAKPGQVERKWYVVDATDVPLGRLSAVVASVLRGKNKPTFTPHTDTGDFVIVINAEKVKLTGKKATDKIYYTHSNHPGGLKQISAGELRSKNAVRLIEKSVKGMLPHNTLGRAQGMKLKVFVGAEHTHAAQQPEVLDISGLI*	mmseqs_cdd	nonviral_gene	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0001	persistent	direct	high	446	0.998	GCA_013305725.1_00319
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	297260	297652	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	466	858	GCA_013305725_1_1_279	GCA_013305725_1_1_279	+	2086958	.	PRK00132	30S ribosomal protein S9; Reviewed	MSQAQYAGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRLVINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQFSKR*	mmseqs_cdd	nonviral_gene	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0002	persistent	direct	high	392	0.997	GCA_013305725.1_00320
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	297667	297780	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	873	986	GCA_013305725_1_1_280	GCA_013305725_1_1_280	-	2086958	.	.	hypothetical protein	MIFKILKRLSEGYHKAILAQKSTKKHFAKSLQSALKR*	.	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0003	.	unmatched_CDS	none	0	0	.
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	297785	298939	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	991	2145	GCA_013305725_1_1_281	GCA_013305725_1_1_281	-	2086958	.	PDB:1Z19_B	Integrase	MSIHKYKTKKGILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTDKPNPKVTYKELYQEWFNAYVGTVEETTSSQTKNIYRIHILPIFGDKFIDQISPLDCQNFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEELHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADIDFDSNLLNIDKSLGRIDGKAIEKCTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQLPLTKLNISNEYMFSYISSNDKIEPLHADYINNVLNRIIKNHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMTLDVYTHTTKTGEKNSIDKFADYLNKAK*	common_virus_hmm	common_virus	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0004	shell	direct	high	1154	0.999	GCA_013305725.1_00321
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	298991	299509	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	2197	2715	GCA_013305725_1_1_282	GCA_013305725_1_1_282	-	2086958	.	PFAM:PF10078.8	transcriptional-regulator	MTNHITKLIENSGKKLTEISEATNIAYPTLSGYNQGIRKPKKDNAEKLAKYFNVSVAYIMGLDSNPHAPSNLKIVTDSFKTSKIGSVTPFKSDMEKLKKSIEFGERALTLPLDDSFSDEFRHIFSEYLAEKNKRFMSEFIDYMNHQNKDSKVWQSWIKTDEYAIRQEDRKNR*	phrogs_hmm	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0005	shell	direct	high	518	0.998	GCA_013305725.1_00322
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	299657	299938	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	2863	3144	GCA_013305725_1_1_283	GCA_013305725_1_1_283	+	2086958	.	PFAM:PF07471.11	DNA-packaging-protein	MSETTLVVQLPKELEKQLRAHYDEMISNAVARVFEDKELYKPMVRMSGLSRWLDVSTTTIQKWTKEGMPTMVIDGVTLYDKRAVTRWLKQYER*	hallmark_hmm	common_virus	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0006	shell	direct	high	281	0.996	GCA_013305725.1_00323
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	299947	300786	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	3153	3992	GCA_013305725_1_1_284	GCA_013305725_1_1_284	+	2086958	.	PFAM:PF09681.9	phage-replisome-organiser	MNGVQWIKITTDIFDDEKIQLIESMPEGDTLIVIWFKILVLAGKQNNSGILSLGNKVYYTEEMLSTVFRRKATSVKLALSMFEEFGMIEIIDGAITIPKWEKHQNIDGLEKIRKQTRERVARHRQKQKALITGEPQLVLDCNVTVTDENDNVTQEIKNKSKNKKEIENILDNSSRKPETYIPPKYYSLLESISYKYNDRFLYPNNYTLTHAQKMKIGEYLASGYVTSDEVISMIERIPEDATSPLAYLFKSMENLKQERMLECKAIAHENARKKYMINE*	rep_hall_hmm	common_virus	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0007	shell	direct	high	839	0.999	GCA_013305725.1_00324
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	300779	301138	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	3985	4344	GCA_013305725_1_1_285	GCA_013305725_1_1_285	+	2086958	.	6QEQ_C	Bacterial mobilisation protein (MobC)	MSRYRTVLKKCYITEEQNEIVNNLIEMTNHLSFSSYARKMLFKSSPIYLQFDFESYHDFIFQVRRIINNLRQLERIAEQSEDLDNVRIFHYCVELMIEYEKKTSKQVKELVKRLNKKTR*	hhsuite_tools	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0008	shell	ambiguous	low	9	0.025	GCA_013305725.1_00324
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	301146	301478	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	4352	4684	GCA_013305725_1_1_286	GCA_013305725_1_1_286	+	2086958	.	PFAM:PF07328.10	T-DNA-border-endonuclease-VirD1	MRIKSVLKQVFLTEEENKKLNDCMRKENIRNFSEFARQKLIRTDLNIQKVSFEGLVPLTEELEQVGKNINSIARLATVVGRISYENKMDMSILMQKIVDVMEEKDVYFQK*	common_virus_hmm	common_virus	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0009	shell	direct	high	332	0.997	GCA_013305725.1_00325
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	301459	301653	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	4665	4859	GCA_013305725_1_1_287	GCA_013305725_1_1_287	+	2086958	.	.	hypothetical protein	MFIFKSNMDKDFDQICEYILKLKRAELFLHGIKQQDKTKARLYHAMLEYYDANHKKERHMRILK*	.	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0010	shell	direct	high	194	0.995	GCA_013305725.1_00326
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	301966	302175	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	5172	5381	GCA_013305725_1_1_288	GCA_013305725_1_1_288	+	2086958	.	PFAM:PF07942.11	DNA-methyltransferase	MKENLIKSKKRVQKHGEVFIPFWMVQKILDTPGIKETCEDISATFLEPSAGDGKFLQAILERKLSAVIM*	phrogs_hmm	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0011	cloud	direct	high	209	0.995	GCA_013305725.1_00327
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	302177	302521	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	5383	5727	GCA_013305725_1_1_289	GCA_013305725_1_1_289	+	2086958	.	.	hypothetical protein	MQYDERSWKTKSLIALSSIYGIEFLEDNLEVARSRMFLYYLDWYEQIFSTKLTSRSDIYKSAYYLIHKNIVRGNTLTQRHPVTDEPIWFNEWQLFKGHSSLVRLGKKSLKLENA*	.	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0012	cloud	direct	high	344	0.997	GCA_013305725.1_00328
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	302864	304201	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	6070	7407	GCA_013305725_1_1_290	GCA_013305725_1_1_290	-	2086958	.	PFAM:PF13701.5	Transposase-DDE-domain-protein	MLDNQLTMDVSPYSSLYDIVVPKTHFLRQLIELCDFSFIYDELEKNYRPDFGRKAYSPIMMFKYLLLKDIYKLSDVDVVGRSLSDMAFKFFLGLAPEDSVIEPSSLTKFRKLRIKDDKLLDVLIQKSVQIALEHNLIKSKILIVDATHTKSHYNHKKPQEILRERSKALRKTIYQHSEDIKIEFPKKPQEDNLEAELTYTEELMAVVEKHEELLALPAVSQKFNYLKEAVEDDLEHLEASVKEEARLGHKTADTSFYGYKSHIAMTDERIITACVVTSGEQSDGKYLPELYAKTKENSLDIETIIGHAAYSGKNNIQLTRKEKIHLVSKLNPSVFQKVTVKKRMRLNLIKTQGYLSVQKDTWLFAKQGQGKNIKIRIKLSLITLTLKSARIVFPRKGVIRREQSLKLIHWLLRVTTIFSRRNFRKHLILKKWPDIAIKSKRRMPN*	common_virus_hmm	common_virus	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0013	cloud	direct	high	1337	0.999	GCA_013305725.1_00329
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	304600	305067	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	7806	8273	GCA_013305725_1_1_291	GCA_013305725_1_1_291	-	2086958	.	cd18875	Nucleoside diphosphate-linked moiety X motif 1. MutT homolog-1 (MTH1), also known as Nudt1, is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA.  Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases.	MTEKIKNWVNICVLKNQEILLLNRQHDNFPGWIPPGGKVEFPESFFEAALRELKEETGLTALNLELKGISGFTNSIGNERFVFYDFLCTQFTGELSTSDEGEPKWWNLKDIDKIPMQDDIRKRIPLYLRKGSFESINYWDNNKKCISENKTILFD*	mmseqs_cdd	nonviral_gene	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0014	cloud	direct	high	467	0.998	GCA_013305725.1_00330
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	305313	305600	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	8519	8806	GCA_013305725_1_1_292	GCA_013305725_1_1_292	+	2086958	.	PFAM:PF13744.5	transcriptional-repressor	MGLVLLLRKVDNKIKISEGCEEMDGIGYVLRNLRLNKGLTQKYIYKNLCSRKQLSRIENNTSYPSVYLLYYICQRLEVTTDYVISLTLERGNHAK*	phrogs_hmm	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0015	cloud	direct	moderate	221	0.767	GCA_013305725.1_00331
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	305590	306636	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	8796	9842	GCA_013305725_1_1_293	GCA_013305725_1_1_293	+	2086958	.	pfam02547	Queuosine biosynthesis protein. Queuosine (Q) biosynthesis protein, or S-adenosylmethionine:tRNA -ribosyltransferase-isomerase, is required for the synthesis of the queuosine precursor (oQ). It catalyzes the transfer and isomerisation of the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to form epoxyqueuosine (oQ-tRNA). Q is a hypermodified nucleoside usually found at the first position of the anticodon of asparagine, aspartate, histidine, and tyrosine tRNAs. In Streptococcus gordonii, QueA has been shown to play a role in the regulation of arginine deiminase genes.	MLNDTNKLKYELPVELAAREPVELMSGSRDSSRLIIGFKNSDKIIDDYILNFHNYINPGDLIILNNSKTVSPIFYAYSEKYGEVKFHIKTKNEEGYVIYIRIRSDLQDGIISEKFFLSDKINVTVDKNINGEEFLCSFNCSQEDLYDYLLVHGEAVRSIYTRKKWSIAYYQNGIANKLGSFENPAANRHFSNRILRALRKKGVKIGYITLNCASVDTKIFEEFIEEHSVFKEYYEIPEETAELIRDTKLNGNKIFAVGTTVIRTLESCEYDNFKIVSPLKNYTDLYIYPGYNFKITDALITNFHGSMTSRLALSAAVIGTENIMNLYRHAIDEQYLFYEFGDANLLFM*	mmseqs_cdd	nonviral_gene	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0016	cloud	direct	high	1046	0.999	GCA_013305725.1_00332
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	306824	307105	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	10030	10311	GCA_013305725_1_1_294	GCA_013305725_1_1_294	+	2086958	.	.	hypothetical protein	MAYKISHDIDITEDNGYQVLHRYSDDTYFSLQKDYLFILLSYNGLNNLNDIAKVFSNHKGISINCSLEYVEKVQNYFISERIIFKDENKNHSY*	.	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0017	cloud	direct	high	281	0.996	GCA_013305725.1_00333
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	307080	307988	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	10286	11194	GCA_013305725_1_1_295	GCA_013305725_1_1_295	+	2086958	.	cd00351	Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the biosynthesis of DNA precursors and are active as homodimers. However, they exhibit distinct pyrimidine base specificities and differ in the details of their catalyzed reactions. TS is biologically ubiquitous and catalyzes the conversion of dUMP and methylene-tetrahydrofolate (CH2THF) to dTMP and dihydrofolate (DHF). It also acts as a regulator of its own expression by binding and inactivating its own RNA. Due to its key role in the de novo pathway for thymidylate synthesis and, hence, DNA synthesis, it is one of the most conserved enzymes across species and phyla. TS is a well-recognized target for anticancer chemotherapy, as well as a valuable new target against infectious diseases. Interestingly, in several protozoa, a single polypeptide chain codes for both, dihydrofolate reductase (DHFR) and thymidylate synthase (TS), forming a bifunctional enzyme (DHFR-TS), possibly through gene fusion at a single evolutionary point. DHFR-TS is also active as a dimer. Virus encoded dCMP-HMase catalyzes the reversible conversion of dCMP and CH2THF to hydroxymethyl-dCMP and THF. This family also includes dUMP hydroxymethylase, which is encoded by several bacteriophages that infect Bacillus subtilis, for their own protection against the host restriction system,  and contain hydroxymethyl-dUMP instead of dTMP in their DNA.	MKTKTILTNNLCENNIDSLYVKLCKLLEDNGQHIVSRGMAVKELIGVSIVLTEPKRRFLENSARNLKLYYAIGEFLWYLRGSNDLSEIEYYAPSMAKFSDDGSILQGAYGPKIVPLIDDLIQLLKNDTGTRRAVIPLYSADDLGKESKDIPCTLSLEFLIRNNKLHLITNMRSNDIFLGLPYDIFSFTMLQEYIAYQLGVDLGCYYHYVGSLHVYQRNFKKIEEISQMSPHETAIFNKSDSIFKNFSEIIDLEESIRKNKTFNHNLNLLMDSDFQKIKTELENYRYSREKNVERKTDIYMRY*	mmseqs_cdd	common_virus	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0018	cloud	direct	high	908	0.999	GCA_013305725.1_00334
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	307951	308553	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	11157	11759	GCA_013305725_1_1_296	GCA_013305725_1_1_296	+	2086958	.	COG0125	Thymidylate kinase [Nucleotide transport and metabolism]. 	MSNGKLIYICGIDGSGKTTLSKNLSKNLGSNSIFLPLNQSKIFFKELDSICRKYNTNRWAEFSEIFRGCLWALEMVYFSEKILKPALEQYDYVIIDRYMTCNKVYSNLSITNTLVDRLHELLIQPKITMYIDIEPKIAFSRVIKRNEQQTPKETLENLKIAKELYARYLNNLEYYRLDGRESEERLLQSALGILGDKNEI*	mmseqs_cdd	nonviral_gene	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0019	cloud	direct	high	602	0.998	GCA_013305725.1_00335
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	308543	309526	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	11749	12732	GCA_013305725_1_1_297	GCA_013305725_1_1_297	+	2086958	.	PFAM:PF00303.18	thymidylate-synthase	MKFETILDFYIFYLEELLNGSQKQKVPYSAISDKIEIFNNSVEISHGNLINMMFSKSELNYNIVHTLFSLSGRTDAYILKKYKSAYLRYSDDGFYQNTVGERLYTLYGNQIKRSYGFLKDDIFSPDAICFMKANDNNNIDCTFYVHFYYREERLNVELTYKGSHLLEYTNSDLFIYSSLLSLMSHWLGVKAGSLILKTHSIFISERDKERTEKLLDSCRLLKKVDLSLNHDFSSSLKSYREEFSDAINRVITWDIVEVSKRLNNEIEYINNNFTPYTQDLLFILLADRFHSNTEEYKTILDKINNDSIRCFKETVDRTEFNSILEVV*	phrogs_hmm	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0020	cloud	direct	high	983	0.999	GCA_013305725.1_00336
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	309529	309789	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	12735	12995	GCA_013305725_1_1_298	GCA_013305725_1_1_298	+	2086958	.	5V1V_A	TbiB1, TbiA(alpha) Leader Peptide	MNYKKSLSAVLHSSSDKDFLLNLLSDRTFLLNDVSLYIWNSIEKYSLEDIAINLSNLYNENLDIVRQDLHEMIEILVSEGLIEIKN*	hhsuite_tools	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0021	cloud	direct	high	260	0.996	GCA_013305725.1_00337
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	309808	310488	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	13014	13694	GCA_013305725_1_1_299	GCA_013305725_1_1_299	+	2086958	.	1KNY_A	ANTIBIOTIC RESISTANCE, TRANSFERASE, PLASMID	MCNNDYTLITKEISNLVSEKNIVIWKSEMDGLGTSLSDIDAYCICDEEKNFKNFSFNGIPVDIEYIGLNNLKEKLENIDKFAKHGLAYKGLDEDLKLFYRLERGHKSQQFNLNDIELPTIDVISKIAAQYYNELFLALYEDAFKMFHGKNFLDAFILSLEALQMSVATYLARIGKPQFKKKWLFKYFDNLTDCSYYEELRIELESDTILPERISKILSDSKKILEF*	hhsuite_tools	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0022	cloud	direct	high	680	0.999	GCA_013305725.1_00338
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	310763	311584	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	13969	14790	GCA_013305725_1_1_300	GCA_013305725_1_1_300	+	2086958	.	.	hypothetical protein	MKFKILCVKFLLNIYYGLSDIKFIERLENMNVVYIFKNSKTGNKILLKIFSSSKVDTIVFQNELAKYKLSPNLIKTNKGNIYIRVFKYLIFVQYFVEASSRRIEYSEMVIFFKDFYAKLDYYKNFFLETSIGFPNYKTNAISQHFSMIHGDLRPPNVIITANNFSVIDFEYLRLGVREVEVIKYIVLYTNFNNCEVEILYSKFLEAGIVEISLQESIRFLLFELLKSDFPEKYIVRITLDYYNEIISERIKLIEFCDNYLNKKKGGDLSVSRS*	.	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0023	cloud	direct	high	821	0.999	GCA_013305725.1_00339
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	311568	312614	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	14774	15820	GCA_013305725_1_1_301	GCA_013305725_1_1_301	+	2086958	.	cd07762	Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup are of bacterial origin and have not been characterized.	MSVEVEKKYLLTSDEYYALSKSHFEGAIIQEQLNYYFDSLDFSLLKRGITLRIREKANNLILTIKRKISINDVIESEENDFLISRIEFMEAVLRGEFPKKVEQKLNVLIPKKKIFYLGLLKTQRLIKEKDSILYCLDRNTYFDKQDFELEIEGTRESLQKVSVDIPEKKFNRVGKYSRFISELLKGNGNSLIKIQVSAIILNEDKDEVCLIKKNAPTSSVHNIWIPPGGHVDIGEDLLKAVKRETIEETGLEVEILALSSVVSFQIQQTSQAICFFYLVEAKNCGEITMLEPGMDCKWFNLADVISGNITNLTDYHKLIISNSKNTNTLYLDLEKKGLDYKILNSKIL*	mmseqs_cdd	nonviral_gene	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0024	cloud	direct	high	1046	0.999	GCA_013305725.1_00340
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	312673	313467	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	15879	16673	GCA_013305725_1_1_302	GCA_013305725_1_1_302	+	2086958	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MLTAIIRRNWQMYVRYFPITLFFNRILDIGFKLLGLWLVSNFLFDNKIQVNNVIEYRDYFSYAAIGLIFYNVSIAILMNVGRALITEVREGTLESTLVSPYSIVKYYFGIFFEQLGRTFLEFLSSYSIAFFLGANLQSISLLNLIICFLYVSLISFSMGTLLSNIMLWFRDTFITQNTLFLIIFLVSGITFPKELLPSFLQKISKMIPLSHSLDAIRNLFFNTSHFNIYNFDFLQGILISVVYFIVGLLVYKKIEQKIVSYISY*	mmseqs_cdd	nonviral_gene	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0025	cloud	direct	high	794	0.999	GCA_013305725.1_00341
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	313483	314454	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	16689	17660	GCA_013305725_1_1_303	GCA_013305725_1_1_303	+	2086958	.	COG1131	ABC-type multidrug transport system, ATPase component [Defense mechanisms]. 	MLKAINISKNYTFKKRTGLFQYEKQIKKAIVNVNLSLPKGKIIGVLGENGAGKTTLIKMLTTLLTNDTGIILIDGVDINENLKNTRKKINIISGGEKNLYWRLTAVENLIYFASLYGISKREALPKIEKLLIELGLWNSKDIPVEKYSKGMKQRLQIAKGLINDPEYLFLDEPTLGLDVSVAHELRKKLKEIAIKRNTGILLTTHYMAEAEELCDYIYFLKKGKIIISGTKDEVFDKLELAPEIHITLAPQFQWNSMEIKRLRDLFPELEYRKEENLTLIKFSLLKYKVQSVIKTIYERNIDIIEIKHTEPSLEDVVLHLERR*	mmseqs_cdd	nonviral_gene	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0026	cloud	direct	high	971	0.999	GCA_013305725.1_00342
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	314489	315259	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	17695	18465	GCA_013305725_1_1_304	GCA_013305725_1_1_304	+	2086958	.	6M96_B	ABC transporter, Transport permease protein	MRRTLFNDSTNIFYFFSMILWPIFSLLQVYYNIGAFPISDLKILDLSNEEQLFYFIFIGYCTYIIFSNAFQSAWRLGGERYQGTLSQIFIAPLKKILWLYARTFSSIFSQSWFFMVIFVIGNFAYIDFSLKSIFHILLATIILITSSWIWTSFLSSICIVMRDATIVYVLLEGSQDTFSGAKVPLSISPKLVKFIGSLFPVSYTIIYLRDMLLFNKFYSLNFYLLIGINIVCFLLTNIILRIGESHMKKHGSFDVV*	hhsuite_tools	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0027	cloud	direct	high	770	0.999	GCA_013305725.1_00343
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	315381	316070	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	18587	19276	GCA_013305725_1_1_305	GCA_013305725_1_1_305	+	2086958	.	pfam13749	Putative ATP-dependent DNA helicase recG C-terminal. This domain may well interact selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	MPKLIVKVRDFIRTQLREFQYLDSDGRFQILPEYPEFAWFEGIVNAVTHRNYSVYGDHIRVLMFDNRLEIHSPGKLPNIVTVENIRHERFSRNPRIARTLTEFGWVREMNEGVKRIYSEMESAFLHEPCYSEPGNKVVLTLENSITSRTLRTRDSLESKLRDYSDLSVDEKLLIQYMYNTAEPMTTKKVAEFLGRSVSYSSKLLKTKGILTWYGTSTKDRSQYYKLEMK*	mmseqs_cdd	nonviral_gene	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0028	cloud	direct	high	689	0.999	GCA_013305725.1_00344
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	316584	317801	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	19790	21007	GCA_013305725_1_1_306	GCA_013305725_1_1_306	-	2086958	.	PDB:1Z19_B	Integrase	MSITKTKNGTYRLRIYIPEEVKSSLGVDKKVIEKRFKTRSEAKKYELELQNKIDKIISGESALLENNGSILFSDFYKNVWWESYKAGQTTSTTKPPSQATITGTEIAFRKHILPMLGNYSIEFLNQNKQVVLNLLTQKAEEYANFKVIRSYVNSIFDWAEELEYIETNRLSKTISRIKATKKIKLQESKKDEDLYLSQEELQAWFTAFEKDLDTGKILFKDYVLFYTTFFLGDRKSESYALQWKHINTSDQEIQLVQALDKYKNPKSTKGNKKTTFRIPIELTNLLKEWKKQQKDELAKFGIIQSNEQYVFTYIDMKGNVNSPLHSDYLNNKMKSVKRRHPELKHATPHKLRHTGATLAKQAGTSIEAISEALTHSDTITTKTYVNTSNIIPMAVGEIAYRNLKK*	common_virus_hmm	common_virus	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0029	cloud	direct	high	1217	0.999	GCA_013305725.1_00345
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	317870	318130	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	21076	21336	GCA_013305725_1_1_307	GCA_013305725_1_1_307	-	2086958	.	PFAM:PF07471.11	DNA-packaging-protein	MQVILPDEQVQQIQLLLAELIKKEIENRLNNSNLDSPFLNKQQTCHYLGISNNTLDSWIKKGLPYIRVGKTIRFDKAEINRWLQNQ*	hallmark_hmm	common_virus	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0030	cloud	direct	high	260	0.996	GCA_013305725.1_00346
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	318179	319576	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	21385	22782	GCA_013305725_1_1_308	GCA_013305725_1_1_308	-	2086958	.	PDB:3DKX_B	DNA-replication-protein	MTSKKKEALLTSIAITQYFDSTYWKNGWDEELIKSENIEKILEEIVRRVSEIATVTEAYAIKHDKDTSVVFDKELQETTTELAQPHIHALLKFKKCKGATLSTLAEIIGLAEEYLEKSKSGRYGYDNLLAYLIHAKDKDKYQYSPDEVVTLAGKDYLEVYHKRKEIWLKGKAKKEVNQTYEDIDLLIDNILNEYITKNEILLEQKYRTLYAVHKARINDTFRTVGEIKGTRTKYELDNGEFKKTILFIHGSTGLGKSTFAKDLSKAIIQLAKLNGQNWQSVVTAATNIFDEVNGEEILFLDDVRGDSLTASDWLKLLDPFNISPISARYQNKMGAAKVIIITSSKYPLDFFYNTKGNDREDLSQYVRRIECLARIRGNDKNPKFYVSYPQRMEEPVKTILENEQEVSLSYDFANDSLLNSRQDLLSTLLSKIAINNQWDILELGKSKTPSETLASEDEVADNQEK*	rep_hall_hmm	common_virus	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0031	cloud	direct	high	1397	0.999	GCA_013305725.1_00347
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	319959	320681	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	23165	23887	GCA_013305725_1_1_309	GCA_013305725_1_1_309	-	2086958	.	PDB:2IUS_D	DNA-TRANSLOCASE-FTSK	MIKNVFEVNNRGDPSPITIDINRYFAWIIAGPSGSGKSTFLRRLLGLISFHDTDAEVYLMDFKADEEMFSMTGNHVARGFNCLELFEIVYQRFETRLNKQEENSHNLYLIFDEWQAFLAYLEQTDKKKHKEVLSKILMMNSMGRSLGLRIILSSQRFLMSDLPGRYNFNCVISLSTSFLLATNNRQLLFPDMEKSEVIVKPRGYGYFQLEGEAVKMFRTIQVKDEERLNQRMQELFSRYS*	common_virus_hmm	common_virus	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0032	cloud	direct	high	722	0.999	GCA_013305725.1_00348
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	320683	321219	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	23889	24425	GCA_013305725_1_1_310	GCA_013305725_1_1_310	-	2086958	.	.	hypothetical protein	MKKLVTKFMDIEWYYQLLISSVIFVLLALLIKFLVWIAPIFLVIFGLLIIYNEGEIIAFAWQRYKQRNQTSGNPLYEELYHWLTEKGVTELPISSLKFTQGVEADKPYTYFVHIDKEITDELLESFETKVRQVVKTLSNGSTDCVVSRSKREPFLAIKVRLVSADTMLVQKNQREEDF*	.	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0033	cloud	direct	high	536	0.998	GCA_013305725.1_00349
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	321235	321627	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	24441	24833	GCA_013305725_1_1_311	GCA_013305725_1_1_311	-	2086958	.	.	hypothetical protein	MSKEKKLTPGNHESARAFLDALSTSVDVPSAVKVVDKNNGIINEGQENQRPWASLTCVDVKLYEQFASINQESYCPTFKVKLKNYQNENLDGLINADIVISKYDLSFVLDKLKQPVGLALVAELADISLK*	.	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0034	cloud	direct	high	392	0.997	GCA_013305725.1_00350
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	321810	322550	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	25016	25756	GCA_013305725_1_1_312	GCA_013305725_1_1_312	+	2086958	.	.	hypothetical protein	MLHEFKNLSDVSKREFVLKYYPLILRSQQKKERLSKEKFLMRYFQVKRGEHAGKLLISKPAYKRYLRLIKYIGISRYDYIDDVIKNEDVIKNEDGSYSMSLGDYPMFDYPMFDVVEPHFSELDIPNIHQKKYGIDIPKHIIEKFDDDVLEEIWSIVSRNTLSDRFLKGRQLYLSGIGQEILKSLAELNLTELLYATLNNLRIDEGGKKEYHIERYELVKRMVSELERLAKSEYDKAIKLEEFVENF*	.	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0035	cloud	direct	high	740	0.999	GCA_013305725.1_00351
GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote	cenote	CDS	322626	323021	GCA_013305725.1	CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725.1_CP047883.1	GCA_013305725.1|CP047883.1	GCA_013305725_1_1	GCA_013305725_1_1@C18	25832	26227	GCA_013305725_1_1_313	GCA_013305725_1_1_313	-	2086958	.	PFAM:PF10078.8	transcriptional-regulator	MDSLLYLFLEKTDSTMVYSMEYNKLQKHIAFRIRECRKEQGLSQEKLSEIAGLGVKAIQNIENMKYDFKIKTLESVIKALNLTVEEFFDLQSYESEREDSPEILFENLTKLPKEKQGKIISSFNEIVKNIK*	phrogs_hmm	hypothetical_protein	C18	26227	296795	323022	GCA_013305725.1|CP047883.1@region_296796_323022@tool_cenote_CDS_0036	cloud	direct	moderate	351	0.886	GCA_013305725.1_00352