core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote	cenote	CDS	1	2328	GCA_013333575.2	JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575.2_JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575_2_6	GCA_013333575_2_6	2	2329	GCA_013333575_2_6_1	GCA_013333575_2_6_1	-	7732	.	PRK00629	phenylalanyl-tRNA synthetase subunit beta; Reviewed	MKVSLNIVRSLINFELPSVDELVSRVNQQLGGVEEVIDLGVKYSSVRIVRVVECGKHPDADRLSVTKIDDGGAVPDVSRDDNGYVQVVCGAPNVHADMWAIWLPPGSTVPASFDDAEPFVLGARPLRGVLSQGMLAAADELAIGTDHKGIIEITENDLPSSAELQAGARFAEIFGLDDFVLDIENKMFTHRPDCFGQLGVAREIAGIFGKQFISPEWYKAQQQFCTAEGLDLMVTNDAPELVPRFMAVVIKDVEVKPSPLWLQCQLVAMGGKPINNIVDATNYIMMMTAQPTHAYDYDKLRGHYLGARLARLGEKVSLLNGKEYELTVDDIVIADGEGVIGLAGIMGGSNTEVSNDTKNIVLECATFDMYALRKTAMRHGVFTDALARFNKGQSPLQNAAVLKRLMSVVSGVQASEVFDLKQFSDEFDDYFDGKYTPANIDIDSKFINERLGLKLSENDICGLLNNVEIKSHGPEEELDYICIQSPFWRTDLELSEDIVEEVGRLYSFDKLPRELPHRSIKPAPKNPRRELKNAIRQSLSRAGANEILTYSFVHERILKNAEQDVTQAYKLSNTLSPDLQYYRLTVLPSLLDKVYTNIKSGHNEFALFEIGKGHLKSKGLNKEGLPIENNYIDLVYTSKKDKPGAPFYVTKKLINNLGKDLGVKFEFEKIVNQIDKQILAPFDIDRSSLIIIDNGDIVGLVGELKQSVIKNFKLPQYISAASIDIDILQKNISKKIGDSYHPLSKFPSTRRDISIEIDLAVSYKDVLNVVKNSLQK	mmseqs_cdd	nonviral_gene		.	0	7732	GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote_CDS_0001	persistent	indirect	.	.	.	GCA_015257555.2_00545
GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote	cenote	CDS	2351	3688	GCA_013333575.2	JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575.2_JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575_2_6	GCA_013333575_2_6	2352	3689	GCA_013333575_2_6_2	GCA_013333575_2_6_2	-	7732	.	Uniprot:T2PM72_GARVA	tail-tape-measure-protein-	MNNSTLTLTIRANVLALQTALKTAQASVKNFSSNVGKKLVGNAANLKDAFSQAGGFIESTLKRVAAVAVGGSFGLMSFVKSASELQSLRSSFESLTGTVEATNVVMKTLYQYGKEIAFDNKSIQATAKMFLANGVAVQDLMGWMRNLGDLAGATGADLQGLALPITQAIGTGKMMTQDWYQIINQGAGGFKKYIIAAMGAGHSIKTFGDDLSKGKVTADVLRKALQMASAEGGMAFQGAIKQSRTFNGRMSNLLETITNVGMKIVGVDAATGQVKAGGVFDKISKAVEDATNWLEENKDKIQKVADIVINNFVPAVTAAGVALVAMKVGSFAASMIQFASAIRGGKTAMEAFNLVTGKNPMLLIVAAIAAVVGVLVFLQVKFNIFGKAWEAIKSAWSAAVSWFGGIFNAIGQVVSDFVGGVLGFFGDIWNGIVGVFNKIIFSKLL*	hallmark_hmm	common_virus		.	0	7732	GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote_CDS_0002	cloud	indirect	.	.	.	GCA_000759185.1_02500
GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote	cenote	CDS	3815	4207	GCA_013333575.2	JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575.2_JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575_2_6	GCA_013333575_2_6	3816	4208	GCA_013333575_2_6_3	GCA_013333575_2_6_3	+	7732	.	.	hypothetical protein	MFNLFKKKEKLPLCASGEYNGTYNPIKDSVLSAELLFDHDSVTFLFDKGVKKDVIRRFDWSEVEGFDFNSKKEDKTVVFRTILYLKDGQITLVKPIEESNVQYGIITTLEPHYKKIRQFVAGKLNSESSK*	.	hypothetical_protein		.	0	7732	GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote_CDS_0003	cloud	indirect	.	.	.	GCA_015257615.1_00223
GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote	cenote	CDS	4204	5172	GCA_013333575.2	JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575.2_JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575_2_6	GCA_013333575_2_6	4205	5173	GCA_013333575_2_6_4	GCA_013333575_2_6_4	+	7732	.	smart00894	Excalibur calcium-binding domain. Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated.	MSLSLRRKKSAESNKTDKTKPSAKSFKQIYQESKNRPLTKNEKRGWAIFGGIIIAILIITHISNVMEQSRLEKDNVSIVISDIEDNIKLDYHTDKREISAKISGVSSFAEVKISGDKTDIHDRKDAAGNIKYEVKNIKEGDSDITISAVDGKRHSNKTVKFHRQTKADYNKQELEKSLKYTEEVVKKAEEQPTDENISRAKSDINKLPEDKRAPFSERITKLEKAKQEEKERDEQAKKAAEEKKKQEEAAAASARQQQAHSSQPTAIPRQTTPAPQPAPAELNFGSCKEARAAGYSHMRRGEPGYAPHLDRDGDGIACDKHR*	mmseqs_cdd	nonviral_gene		.	0	7732	GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote_CDS_0004	cloud	indirect	.	.	.	GCA_015257615.1_00224
GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote	cenote	CDS	5404	5748	GCA_013333575.2	JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575.2_JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575_2_6	GCA_013333575_2_6	5405	5749	GCA_013333575_2_6_5	GCA_013333575_2_6_5	-	7732	.	.	hypothetical protein	MSNREVTIELNDGRSAVIRGFIRNRDRSMYRRLMLEGQTMSTKEMEASDGEVDVDLSRVMGASDKLIEKLLLEYCGNREQPFEALMDSEFGDDYETISNKVMEVFGKERELPKE*	.	hypothetical_protein		.	0	7732	GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote_CDS_0005	cloud	indirect	.	.	.	GCA_015257615.1_00226
GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote	cenote	CDS	5764	5961	GCA_013333575.2	JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575.2_JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575_2_6	GCA_013333575_2_6	5765	5962	GCA_013333575_2_6_6	GCA_013333575_2_6_6	-	7732	.	.	hypothetical protein	MTHKDHSIIIIYFLQSYSLSKVAISSREPSYGLSDISTETINFEGLLNITDSKTIEAELVNKYEY*	.	hypothetical_protein		.	0	7732	GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote_CDS_0006	cloud	indirect	.	.	.	GCA_015257615.1_00227
GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote	cenote	CDS	6004	7029	GCA_013333575.2	JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575.2_JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575_2_6	GCA_013333575_2_6	6005	7030	GCA_013333575_2_6_7	GCA_013333575_2_6_7	+	7732	.	COG1647	Esterase/lipase  [Secondary metabolites biosynthesis, transport and catabolism]. 	MFTPLITAISLILGPTLHPEIVAAQDQLKSPSEIEKLSYDDAIARVNDIIAEENSTNDIRPECHSIMKDHGKKTDKAVVLIHGVSGCPAHFAELANKFYNEGYNVFIPRMPKHGLTDNNRHGEVTLAELASFAEQTTSILSGLGEEAGVAGSSGGSSVATWIAQYGKGTVKKLLLLEPFYATYDKFQNTLVKKVYGWNLLPDILINGNLSLRALGKYLLLVDSYKPDMYAPGVESISVILSEGDTGIDHSEAANISKKMADSSGAEYQYVELPKSMGLKHGIINPGDPLVIPHKEKLYDMYYKAYTGEKVSALAESNTIEDTETEEEQPSQLSELSLVLEQ*	mmseqs_cdd	nonviral_gene		.	0	7732	GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote_CDS_0007	persistent	indirect	.	.	.	GCA_022819345.1_00774
GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote	cenote	CDS	7086	7550	GCA_013333575.2	JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575.2_JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575_2_6	GCA_013333575_2_6	7087	7551	GCA_013333575_2_6_8	GCA_013333575_2_6_8	-	7732	.	COG0537	Diadenosine tetraphosphate (Ap4A) hydrolase or other HIT family hydrolase [Nucleotide transport and metabolism, Carbohydrate transport and metabolism, General function prediction only]. 	MKHTIFDDIVSGKMKSWKVWEDEKFLAFLTPFPNTPGFTVVIPKENPGDYVFSLDDELYSEMMLAVKKVANILEKAFDAPRVALIFEGTGVAHVHAKLVPLHGDLAKGIGSPVSHEQAFYEEYPGWLTTADGPKMDDAQLDEIQKKIINIQGNI*	mmseqs_cdd	nonviral_gene		.	0	7732	GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote_CDS_0008	persistent	indirect	.	.	.	GCA_002902365.1_02217
GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote	cenote	CDS	7560	7730	GCA_013333575.2	JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575.2_JABCOO020000006.1	GCA_013333575.2|JABCOO020000006.1	GCA_013333575_2_6	GCA_013333575_2_6	7561	7731	GCA_013333575_2_6_9	GCA_013333575_2_6_9	-	7732	.	NF040477	reactive chlorine resistance oxidoreductase RclA. 	DANTEQILGASLLCRNSPEVINIIKTVMDNDLPYTVLRDQIFTHPTVSEALNDLFA*	mmseqs_cdd	nonviral_gene		.	0	7732	GCA_013333575.2|JABCOO020000006.1@region_1_7732@tool_cenote_CDS_0009	persistent	indirect	.	.	.	GCA_000277715.1_00620