core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	genomad_gene	genomad_length	genomad_strand	genomad_gc_content	genomad_genetic_code	genomad_rbs_motif	genomad_marker	genomad_evalue	genomad_bitscore	genomad_uscg	genomad_plasmid_hallmark	genomad_virus_hallmark	genomad_taxid	genomad_taxname	genomad_annotation_conjscan	genomad_annotation_amr	genomad_annotation_accessions	genomad_annotation_description	genomad_element_name_std	genomad_element_name_orig	genomad_element_gene_wrt_to_contig	genomad_element_gene_wrt_to_element	genomad_element_gene_start	genomad_element_gene_end	genomad_protein_translation	genomad_phage_region_id	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	genomad	CDS	627031	627447	GCA_013378355.1	CP040798.1	GCA_013378355.1|CP040798.1	GCA_013378355.1_CP040798.1	GCA_013378355.1|CP040798.1|provirus_627031_634290_599	417	-1	0.424	11	AGGAG	GENOMAD.017137.VV	4.186e-29	114	0	0	0	1246	Caudoviricetes	NA	NA	PF05263;TIGR01636;COG2739	phage transcriptional activator, RinA family	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	GCA_013378355.1|CP040798.1	599	1	1	417	MTAQEAKARLEQIKWLDEEIKTLHQELQYLREGIFQSSRLTDTRVQTSKVNQTDDHIIQNIKSAEDIERRIGEVIKIRLGIINTIDKLGSSLDRTVLRMFYVNHLEAWEIGEKLHKSNSTIYHIRKEAIERLAALDNS	GCA_013378355.1|CP040798.1|provirus_627031_634290	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad_CDS_0001	cloud	direct	high	417	1.0	GCA_013378355.1_00652
GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	genomad	CDS	627561	627782	GCA_013378355.1	CP040798.1	GCA_013378355.1|CP040798.1	GCA_013378355.1_CP040798.1	GCA_013378355.1|CP040798.1|provirus_627031_634290_600	222	1	0.369	11	AGGA	GENOMAD.121480.VV	1.397e-34	126	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	GCA_013378355.1|CP040798.1	600	2	531	752	MSKKLWNYLRSKVRVVDINGNIISGLVTDFVDEMDNDEQDEITILIDGSNPDSPTEVSLYERDISSIQVITGA	GCA_013378355.1|CP040798.1|provirus_627031_634290	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad_CDS_0002	cloud	direct	high	222	1.0	GCA_013378355.1_00653
GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	genomad	CDS	627889	628404	GCA_013378355.1	CP040798.1	GCA_013378355.1|CP040798.1	GCA_013378355.1_CP040798.1	GCA_013378355.1|CP040798.1|provirus_627031_634290_601	516	-1	0.401	11	GGA/GAG/AGG	GENOMAD.113453.VV	9.172e-15	74	0	0	0	1	NA	NA	NA	NA	NA	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	GCA_013378355.1|CP040798.1	601	3	859	1374	MDTMKSIAIETFIKPMKINNISHGIAELAGRKLEIDLDNLCITFDKDCFNLTKISGTKGGSRYFFLCPLCGRRCRILYKQLILYGCGSCQQVHKQTLNRSKTDCQYYWERALREARKVEPGWSPKRGGYMFDAFPARPKFMKRQRYYKHYQRFVNYTRKGDSLWMNGLNID	GCA_013378355.1|CP040798.1|provirus_627031_634290	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad_CDS_0003	cloud	direct	moderate	471	0.913	GCA_013378355.1_00654
GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	genomad	CDS	628492	629019	GCA_013378355.1	CP040798.1	GCA_013378355.1|CP040798.1	GCA_013378355.1_CP040798.1	GCA_013378355.1|CP040798.1|provirus_627031_634290_602	528	-1	0.381	11	GGAG/GAGG	GENOMAD.062535.VV	1.068e-69	233	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	GCA_013378355.1|CP040798.1	602	4	1462	1989	MTLKTISEKAKSFTFTYSFADYQTAQTAGHALMGYMLGTYHQPVIELTYKGNGQLVADYAEDKSLSKVLKRICDGFEKPETVDTIESRYKLKRVQQLKKLENFDSLLDKLVAYELELLDYADRLLSDDPISMDYMTADGTLELVGIESVELLKSLDKESEYSGLSVNKPDSENQT	GCA_013378355.1|CP040798.1|provirus_627031_634290	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad_CDS_0004	cloud	direct	high	528	1.0	GCA_013378355.1_00655
GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	genomad	CDS	629042	629764	GCA_013378355.1	CP040798.1	GCA_013378355.1|CP040798.1	GCA_013378355.1_CP040798.1	GCA_013378355.1|CP040798.1|provirus_627031_634290_603	723	-1	0.407	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	GCA_013378355.1|CP040798.1	603	5	2012	2734	MESLDHSKEDFELDFMESLDPNIIATIRRNANLEAYRVFERDSTVTNEILNATFENFKAETPKEKAAKDFAIKQAKLYLDGMRGNTIITGPPGVGKSHLCYSLARAINEGYHSKEDAKRVLFVSIAEIVTRIQSGWQDKISDFTEDAAVKLLTSVDYLFIDDLGTESAMTSQKREANNWVQTFLFKIFDKRETTIINTNHTGKELAQIYNPKLVSRIGKRSEGNVFTMAGITDKRMKRNF	GCA_013378355.1|CP040798.1|provirus_627031_634290	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad_CDS_0005	cloud	direct	high	723	1.0	GCA_013378355.1_00656
GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	genomad	CDS	629775	630626	GCA_013378355.1	CP040798.1	GCA_013378355.1|CP040798.1	GCA_013378355.1_CP040798.1	GCA_013378355.1|CP040798.1|provirus_627031_634290_604	852	-1	0.363	11	GGxGG	GENOMAD.189730.VP	5.802e-15	78	0	0	1	1246	Caudoviricetes	NA	NA	PF14297;TIGR01714;K02315	phage replisome organizer, putative, N-terminal region	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	GCA_013378355.1|CP040798.1	604	6	2745	3596	MAKTKVYFWLKVDKKFFDNIFIKKLKNIAGGYTMTVIYIRLMLESLESDCILYYEGYFNDLAEELALKLDVSEDDIRMTLSYFTQCGLIQVDSDSNAEMAQAKALVQQETNQAAYMRQYRKEQKEKKNNLTTLSENLTTLTTCKTEIEIELDIEKEKEIELDIEKEIESEERDREKISSPASAEISKYYQSRIGVIDGVQYQQLMDYHTQDKLELDLIKLAIDKAADNGKRSFGYVNTILKNWTKNGIKTVAQQDEEQQRYIADKGHAQKTVNVTDPFGGNLG	GCA_013378355.1|CP040798.1|provirus_627031_634290	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad_CDS_0006	cloud	direct	high	852	1.0	GCA_013378355.1_00657
GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	genomad	CDS	630619	630894	GCA_013378355.1	CP040798.1	GCA_013378355.1|CP040798.1	GCA_013378355.1_CP040798.1	GCA_013378355.1|CP040798.1|provirus_627031_634290_605	276	-1	0.435	11	AGxAGG/AGGxGG	GENOMAD.167683.VP	1.636e-41	147	0	0	0	1246	Caudoviricetes	NA	NA	PF09035;COG3311;TIGR01764	Predicted DNA-binding transcriptional regulator AlpA	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	GCA_013378355.1|CP040798.1	605	7	3589	3864	MFSLSKESENSLNQGILKLINDFLKVSNQPTPRQLGLMTPRQIKEELGITARTLQRWERAGLRRYQPPVEDTRKVFYRVSDILIFLGVDNG	GCA_013378355.1|CP040798.1|provirus_627031_634290	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad_CDS_0007	cloud	direct	high	276	1.0	GCA_013378355.1_00658
GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	genomad	CDS	630902	631240	GCA_013378355.1	CP040798.1	GCA_013378355.1|CP040798.1	GCA_013378355.1_CP040798.1	GCA_013378355.1|CP040798.1|provirus_627031_634290_606	339	-1	0.437	11	GGAG/GAGG	GENOMAD.162362.VP	1.228e-22	94	0	0	0	1246	Caudoviricetes	NA	NA	PF11994	NA	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	GCA_013378355.1|CP040798.1	606	8	3872	4210	MTQTTMPENYTRVLNLIKVGAENAITGAEIANILKIERRAVQEIISHLITRYKIPIIGARLIPHSGYYIPASKAELIDGVRALKNQVQKEQVRLDVLLNADLESYKAFLNRG	GCA_013378355.1|CP040798.1|provirus_627031_634290	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad_CDS_0008	cloud	direct	high	339	1.0	GCA_013378355.1_00659
GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	genomad	CDS	631264	631398	GCA_013378355.1	CP040798.1	GCA_013378355.1|CP040798.1	GCA_013378355.1_CP040798.1	GCA_013378355.1|CP040798.1|provirus_627031_634290_607	135	-1	0.333	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	GCA_013378355.1|CP040798.1	607	9	4234	4368	MEISIFDHNKLNRNAFYVKELDVLFVADTVREQEKQSLIQQFGK	GCA_013378355.1|CP040798.1|provirus_627031_634290	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad_CDS_0009	shell	direct	high	135	1.0	GCA_013378355.1_00660
GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	genomad	CDS	631853	632089	GCA_013378355.1	CP040798.1	GCA_013378355.1|CP040798.1	GCA_013378355.1_CP040798.1	GCA_013378355.1|CP040798.1|provirus_627031_634290_608	237	-1	0.473	11	AGxAGG/AGGxGG	GENOMAD.178953.VV	0.0009985	38	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	GCA_013378355.1|CP040798.1	608	10	4823	5059	MAYLPEERETVIRYDEQEDSWYFETNVRRHITRIQKRLDQYEILAQELDDAGRVIYLQAKMIEGTVSPFAKPRRKPKE	GCA_013378355.1|CP040798.1|provirus_627031_634290	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad_CDS_0010	cloud	direct	high	237	1.0	GCA_013378355.1_00661
GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	genomad	CDS	632104	632289	GCA_013378355.1	CP040798.1	GCA_013378355.1|CP040798.1	GCA_013378355.1_CP040798.1	GCA_013378355.1|CP040798.1|provirus_627031_634290_609	186	-1	0.452	11	GGAG/GAGG	GENOMAD.065031.VV	1.798e-26	102	0	0	0	1246	Caudoviricetes	NA	NA	PF18090;TIGR00721;COG1974;K22299	DNA-binding protein, Tfx family	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	GCA_013378355.1|CP040798.1	609	11	5074	5259	MLITKSQAKAIRRKQADKRLTAKQACEDIGVVPATYRKLITGGEVKNFVYQKAMQWLAEDY	GCA_013378355.1|CP040798.1|provirus_627031_634290	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad_CDS_0011	cloud	direct	high	186	1.0	GCA_013378355.1_00662
GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	genomad	CDS	632444	632944	GCA_013378355.1	CP040798.1	GCA_013378355.1|CP040798.1	GCA_013378355.1_CP040798.1	GCA_013378355.1|CP040798.1|provirus_627031_634290_610	501	1	0.339	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	GCA_013378355.1|CP040798.1	610	12	5414	5914	MNKLKELRKSRKKTQKEISEDLNIPYRTFQRWENGESNIKPDKAQQLADYFGVSVGYLMGYSGLEEIKSNFKLADNLIAEASAEFTKKENALSSDYEKQMGMLTDALETFKKIFNDEDLKEYMERCIELVNNIDGTVKNMLIVQAGQIELEMQKLEFDKLKERLEE	GCA_013378355.1|CP040798.1|provirus_627031_634290	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad_CDS_0012	cloud	direct	high	501	1.0	GCA_013378355.1_00663
GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	genomad	CDS	632992	634290	GCA_013378355.1	CP040798.1	GCA_013378355.1|CP040798.1	GCA_013378355.1_CP040798.1	GCA_013378355.1|CP040798.1|provirus_627031_634290_611	1299	1	0.428	11	None	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad	GCA_013378355.1|CP040798.1	611	13	5962	7260	MITACLLMFRKVHIVKIAEVKKKNGSTVYRTRVYLGVDQITRKKVKASITARTKKELKAKALTAQADFKSNGFTRKARSNISTYSELLDIWWETYQHTLRVNSQIMIKGRLENYLRPAFGKYKLDKLTPAVIQNQVNQWAADYNQHSQGVKDYNFSHSLNKRILQYAVSIQAILSNPARDTIVPRRANKEKLEIKYLDSQNLKRFLDYLDSLDNSYTNFYDSVLYKLLLATGLRIGEALALEWSDIDLEAARINVNKTLNARQGVNSPKSRSSVRELDIDKKTVLMLRLYKVRQREKAREVGTASDTVFTDLIRPYPLKSSLDGRLKNHIKRAGCTPVSFHAFRHTHASILLNAGLPYKEIQIRLGHSTLSMTMDTYSHLSPENEKKRLGQKSNLKYKKRTKLVFWQSEFCFVRFSHLIIDLKGLIIKIFKN	GCA_013378355.1|CP040798.1|provirus_627031_634290	GCA_013378355.1|CP040798.1@region_627031_634290@tool_genomad_CDS_0013	cloud	direct	moderate	1278	0.984	GCA_013378355.1_00664