core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	genomad_gene	genomad_length	genomad_strand	genomad_gc_content	genomad_genetic_code	genomad_rbs_motif	genomad_marker	genomad_evalue	genomad_bitscore	genomad_uscg	genomad_plasmid_hallmark	genomad_virus_hallmark	genomad_taxid	genomad_taxname	genomad_annotation_conjscan	genomad_annotation_amr	genomad_annotation_accessions	genomad_annotation_description	genomad_element_name_std	genomad_element_name_orig	genomad_element_gene_wrt_to_contig	genomad_element_gene_wrt_to_element	genomad_element_gene_start	genomad_element_gene_end	genomad_protein_translation	genomad_phage_region_id	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	53220	53537	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_52	318	-1	0.575	11	GGAG/GAGG	GENOMAD.058637.VV	3.242e-33	124	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	52	1	1	318	MNRQPRQTENQKGRGSIHKKTRKRLMHLHHDGALCWWCGKPMYRDAKLNWDQRPLHADHSKALGQYGAHNNLADRLLHATCNQQRGDGTRDNTRPALHRTEPFIW	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0001	cloud	direct	high	318	1.0	GCA_014335065.1_00954
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	53617	54219	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_53	603	-1	0.561	11	AGGAG	GENOMAD.171303.VP	0.0001994	44	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	53	2	398	1000	MPDFKRLFFSTPNPSEADTGEKTPAPLTFTEEQTATMCAALNLDPDVTADEFVAKFLALVESADEVVAKATENNVAASLNEDEVQRIAASAAKEVLASVNTNDAVIIDRNAWTDMKKAMDVGIKAERQQHRLAAEQVVDQAIRRGKASPVQREHWIDAYNADKEKTMRALNAAKEIPRVEIGHSLSIEQLDAIERNSWVR	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0002	cloud	direct	high	603	1.0	GCA_014335065.1_00955
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	54230	54616	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_54	387	-1	0.638	11	AGGAG	GENOMAD.066855.VV	7.531e-35	130	0	0	0	1246	Caudoviricetes	NA	NA	PF09956;COG5471	Predicted phage recombinase, RecA/RadA family	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	54	3	1011	1397	MFFRNQMQERFNPGTDLTAVATDQVTGKTLVTYSKGLTSGLISVATATPGKAVAGVAKYDADTGEHVGVARGSGRIVTITAATGLKAGDPVTVGDAGKATTATDNSHIVGWCVDDADADTDALISLAH	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0003	cloud	direct	high	387	1.0	GCA_014335065.1_00956
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	54621	55517	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_55	897	-1	0.585	11	GGAGG	GENOMAD.041658.VV	1.46e-70	242	0	0	1	1246	Caudoviricetes	NA	NA	PF05065;COG1659;TIGR01554	Phage capsid family	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	55	4	1402	2298	MFYPGAADLNDRTITVDSVLNDPTIIEHRIAELATPNLIVETVFSQDNSPVQGGAVIYSETTEKNFYTDNDVAQRMPGDEYTIVYRERPEAKLARVEDYGGKFATSDEARRRNQAIDFDNDVRVLSNTLVRKLNQRAIETIEAARDAHKTNTLAIPGTGWKDVVLDGNPTTITAPADRPHSHIANLFAVAEQQELGIEYTKMLVSPAMKATLRMVYGSDLGTMLEDFGLDLISTNFVADDLAYFVDPGKAGFVKYEEPLTVTTWRDEAHRQTWTQAYAMPVMGITTPSAIGVIEFSKE	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0004	cloud	direct	high	897	1.0	GCA_014335065.1_00957
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	55518	55793	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_56	276	-1	0.562	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	56	5	2299	2574	MFTSKPQIANVITFREAMENAPENLFETGSTRGYVVTPALAPNPPSYRTPELVGAWVQGYLAGLAAEDTYENATVNTIEFDLAHYPCLEDK	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0005	cloud	direct	high	276	1.0	GCA_014335065.1_00958
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	55796	56248	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_57	453	-1	0.576	11	3Base/5BMM	GENOMAD.044362.VV	7.448e-19	85	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	57	6	2577	3029	MSWPSATTASDCSITDVELARVGTWNAETGQCAITRADLASAVAAAPHLPAIPVRLGHFDPRFSGSPSLGRVVNLRTGEAGDVLLGDLVDLPRWLYDNVSKAYPQRSIEAALDFQHEGRTFRFCLTGLALLGAEWPAVTSLQDIRDLLEK	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0006	cloud	ambiguous	low	32	0.071	GCA_014335065.1_00959
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	56217	56576	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_58	360	-1	0.556	11	AGGAG	GENOMAD.226887.VP	1.251e-08	54	0	0	0	1	NA	NA	NA	PF09035;COG2452;TIGR01764	Predicted site-specific integrase-resolvase	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	58	7	2998	3357	MHHYKESCFILTPEEATKIARTLLEANAALARQGASIPASMIAFANAVYANVKTQKPIEDTGETVEYEQITSSEAAKILGCGEPNVRALARTGRLPGAKPQGFWIFNRSDVVAFRDYRE	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0007	cloud	direct	high	360	1.0	GCA_014335065.1_00959
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	56593	56919	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_59	327	-1	0.636	11	AGGAG	GENOMAD.101166.VV	5.442e-05	43	0	0	1	1246	Caudoviricetes	NA	NA	PF11114	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	59	8	3374	3700	MKLTALTSIFIDGALIKKGTVFTTTATTGERLIRNGSARPAEQPTKQAAPRNQAPAVKEPDEPTPQEQRPAPPRKAAPKKAWEDYATALGIPAAGLTKPELIAVCLDY	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0008	cloud	direct	high	327	1.0	GCA_014335065.1_00960
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	56920	57207	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_60	288	-1	0.594	11	GGAGG	GENOMAD.226886.VP	6.273e-07	48	0	0	0	1	NA	NA	NA	PF02467	Transcription factor WhiB	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	60	9	3701	3988	MKTPPFPKVRRLPASLRLITDASLDGAACKGHAPLFDLTVHGETSEQREARHHQARNLCRRCPVFTQCTTVAGQLKHDHKQGIWAGMLLDNNKEN	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0009	cloud	direct	high	288	1.0	GCA_014335065.1_00961
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	57204	57389	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_61	186	-1	0.538	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	61	10	3985	4170	MKHHIRCRTVNSKKRLSIVLRPDSRDKTKWFLGTPCGAMLLNEDQMIQLANAVADLLEADE	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0010	cloud	direct	high	186	1.0	GCA_014335065.1_00962
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	57392	58840	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_62	1449	-1	0.547	11	AGxAGG/AGGxGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	62	11	4173	5621	MTAPDRSPKTVFNLVQASTVKSKRTKWLVENMIPWNGLTLLGGREGVGKSTIACAWVAAATLGNLDNKEPLNVIYLHTEDSREATIVPRLRAADADLERIYFLDIELQYDGEDPIESGLVLPAHFPHLRQVIEDNNIGMIVLDAAKSAMASSIDGNRDESVRRMLDPMNRIADELGCVFLGLVHFGKRESADTGKLITGSIAWSQVARSVIAVAKDEDGKLLVSTTKHNLAPHAVTLDAHIEPADVLIEGETVPVGKAVFDGVSNRSISYLLAPEDSDVDKMDRTDCEVWLEDFLEGKNGVPRQLVLEEAAKAGFKVAKTVQRAFKRLGGVSDYTQAKPRTALWSLPSRDTVSPNAYRGVPTVPTVSDLHKCSVPTTNSGNHSVPTTKTAPEQREHLVKSALNPSRDSRDMRVKRSVNPDVYSTILSSLSPEVGLSKRALTGSIPTKLDPENNLDPALKHLEEDGLIVQDFKGNYLLAQGAK	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0011	cloud	direct	high	1449	1.0	GCA_014335065.1_00963
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	58842	59351	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_63	510	-1	0.551	11	AGGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	63	12	5623	6132	MSSPSQKTSYRGTQFLSAVLDLAPGLRRQALESVEAEDFTTEPFRIVYKTLLEIPGLDTIDGREALGLALHDQSVANGSMNGEFGRGVQLAILDIATDQSTGDMAFPLAKSLREDRFRAETCAIFSRLIKETKTAPLETIQTSLQEVYQPEIDLFVRIEHPHRRLKKVA	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0012	cloud	direct	high	510	1.0	GCA_014335065.1_00964
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	59493	59624	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_64	132	-1	0.576	11	GGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	64	13	6274	6405	MTAIVCTELLDEADKALVEDAATLLAHLDVTSLLYAAVKTESA	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0013	cloud	direct	high	132	1.0	GCA_014335065.1_00965
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	59621	59956	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_65	336	-1	0.583	11	AGGA/GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	65	14	6402	6737	MHNKNNTDFEHISDKKTGTKSKRRRRRIASHTIVRQTEAGDHAACGHFIARQWVTPVKVDSDGVPLSAEYYPCPACRDMKRLEKSMEGHWPKFLIPADMALDLADRWEVKE	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0014	cloud	direct	high	336	1.0	GCA_014335065.1_00966
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	60041	60409	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_66	369	-1	0.566	11	AGGA	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	66	15	6822	7190	MSNYANSYILLTTVETLPLILEHMPDRSPEGSPWEFEVQEILVERIEPVFRRVLADYIDVIKGESYDFAPNINKEEMLDGMIAHFGKDTLLKLIAKDSFGTAMTYLAEQGEKAVMAMLATPK	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0015	cloud	direct	high	369	1.0	GCA_014335065.1_00967
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	60429	60623	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_67	195	-1	0.605	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	67	16	7210	7404	MPNQYTTEELTLFRADSAITLALAVLRAAENGENINADEAVAGALIDFRIANADYEAATREEDN	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0016	cloud	direct	high	195	1.0	GCA_014335065.1_00968
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	60643	60840	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_68	198	-1	0.601	11	GGAGG	GENOMAD.179464.VV	4.419e-06	44	0	0	0	1246	Caudoviricetes	NA	NA	PF05930;COG3311	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	68	17	7424	7621	MRTQPTVFTVREAARALRIGESTAYAAIRDGDFPVPIIRIGGRYAVPAKPLLDLLGLDELPADAA	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0017	cloud	direct	high	198	1.0	GCA_014335065.1_00969
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	60961	61491	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_69	531	1	0.508	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	69	18	7742	8272	MSFADEESRLIRRMTEKRLEKGWSQNEFARKLQEVGLNWKQPTVDRVEKGARPLRFTEALAIAKFFGETVESMSAPEEFTRWQLLVREAAVAILAERLVHYQWENERMEERVIEIYGRSVYEDLPKPLAKWVDWISHKSPTTQASLALYDHDFDLYEAAAQESGRIFVSSMHSVPK	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0018	cloud	direct	high	531	1.0	GCA_014335065.1_00970
GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	genomad	CDS	61591	62745	GCA_014335065.1	PDHA01000003.1	GCA_014335065.1|PDHA01000003.1	GCA_014335065.1_PDHA01000003.1	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745_70	1155	1	0.543	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad	GCA_014335065.1|PDHA01000003.1	70	19	8372	9526	MARGRPALTPGTWGEINIKPVTTDEEGKPTRWEADTRLRLTTGETVRVRARGQSANKAKTALKQRCAQRLEEHTDHAELSSTSTFSKLLDEYLAVKKTDGTKPQSVDRYTDVIEKHLKPTLGALRLNEITPLVMDQWLHSSKRRNVQQCRTVLNGAFGLAARYRLIGHNPMKDVRPLKTAKKEVNRLTSEEVTEFLKDLRKSDYEYVYEVCVLALLTGFRAGELLALNFSDIDDEKDPPVLTLNATISYSKVTGNIRQEHGKTDAATRSISLAPKAMEIIRKNKERHGEYLPMVFPSATGTYRWENNFNEDFRTARGERWKNVTIHTLRRTFSSVGKGNLDPWSLAVAMGHADSSITEKFYIARDAVDVAAFADQLIPDKGEEV	GCA_014335065.1|PDHA01000003.1|provirus_53220_62745	GCA_014335065.1|PDHA01000003.1@region_53220_62745@tool_genomad_CDS_0019	cloud	direct	high	1155	1.0	GCA_014335065.1_00971