core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_015255645.1|JABZNP010000054.1@region_1_9840@tool_cenote	cenote	CDS	2	1093	GCA_015255645.1	JABZNP010000054.1	GCA_015255645.1|JABZNP010000054.1	GCA_015255645.1_JABZNP010000054.1	GCA_015255645.1|JABZNP010000054.1	GCA_015255645_1_106	GCA_015255645_1_106	3	1094	GCA_015255645_1_106_1	GCA_015255645_1_106_1	+	9840	.	COG2247	Putative cell wall-binding domain  [Cell wall/membrane/envelope biogenesis]. 	NANKKLADGKEFTVDSVKALKDAIKSAEEYIKKASETAFIADERADHIKSINEKISALIAKENDPEPNLKQKKTRIAGSDRYETSTKIADKLKEKLNVEKFDSIVIANGDNFADALSATYLAKVKKAPILIVNKWSADYISNYVKNNTSKNPDIYIIGGEDVVSKEIADKMPGKKHRLEGDTRFETNLEVLKASGVKNEDIALCNAYSFADALSASAAGKPIMLVDKKLSDAQMTYLKKLNFKKFYLIGGSDVVSRNIENAVSKLGDIERLAGDDRYGTSKAIAEKFFAGKHKNAYVTYGLNFPDGLCAGVLCDADKSALLLASNKNMNEASEYVDKAGVSNCTILGGDDLISESAADMLFKK*	mmseqs_cdd	nonviral_gene		.	0	9840	GCA_015255645.1|JABZNP010000054.1@region_1_9840@tool_cenote_CDS_0001	persistent	indirect	.	.	.	GCA_000178095.1_01178
GCA_015255645.1|JABZNP010000054.1@region_1_9840@tool_cenote	cenote	CDS	1307	2401	GCA_015255645.1	JABZNP010000054.1	GCA_015255645.1|JABZNP010000054.1	GCA_015255645.1_JABZNP010000054.1	GCA_015255645.1|JABZNP010000054.1	GCA_015255645_1_106	GCA_015255645_1_106	1308	2402	GCA_015255645_1_106_2	GCA_015255645_1_106_2	+	9840	.	PRK08664	aspartate-semialdehyde dehydrogenase; Reviewed	MKKLEKKLRVGILGGTGMVGQRFITLLESHPWFEVTTIAASSRSAGKTYEEAMSGRWKLEDKMPEAVKNIVVKDVKDIEEISNSVDFVFSAVDMTKEEIKAIEDEYAKSETPVVSNNSAHRWTEDVPMVVPEINIDHFDIIETQKKRLGTKRGFVAVKPNCSIQGYVPALAAWQEFEPYEVCVTTYQAISGAGKNFSDWPEMVGNIIPYIGGEEEKSEIEPLKILGSIKDGKFVKADNLLITSQCVRVPVLEGHTAAVFVKFRKNPSKEELIDRLKNFSGFPQENDLPSAPKPFINYLSEDDRPQVAKDVYYENGFGVSVGRLREDTLFDYKFIGLAHNTVRGAAGGAILCAESLVEKGYIAHN*	mmseqs_cdd	nonviral_gene		.	0	9840	GCA_015255645.1|JABZNP010000054.1@region_1_9840@tool_cenote_CDS_0002	persistent	indirect	.	.	.	GCA_000504265.1_04892
GCA_015255645.1|JABZNP010000054.1@region_1_9840@tool_cenote	cenote	CDS	2423	5155	GCA_015255645.1	JABZNP010000054.1	GCA_015255645.1|JABZNP010000054.1	GCA_015255645.1_JABZNP010000054.1	GCA_015255645.1|JABZNP010000054.1	GCA_015255645_1_106	GCA_015255645_1_106	2424	5156	GCA_015255645_1_106_3	GCA_015255645_1_106_3	+	9840	.	PDB:4KFU_C	Genome-packaging-NTPase	MAGKAKKKPSNKNTKAKKSASAERGVIDNIWGIVYIIAGIFLIAAVSFHAAGEFGNILGDFLKGIFGHVGVILPIYLIAFGIVLMANKAVKVTKLSISMCFVILVMLCLLNSGRFIPQNGMVFDVSEFYKNGVSLSGGGVIGMSIDMFLIKYIGRVGLYGIAIAVILICGMLVVNTPLSRAYSSYKQKKLDKQAEIKAKRAEEMALHQMELETREKERAKFLKEQEKLQKERLRYEKAKYKEELYATPELLFETDKMKIDRNPVSSAQNPNEQHFVSLMKDDSMFEQREERAPEPAPMVKTFGLEEERKAEDGFGLDGGLSYAQGATGLQHETELDNQVDSNNFNNTFDNKNDEPSIKVSTIKTAPALDDVPKEDYHLSADIDSDLDTQDTAANTMEKPEEESVKMSNKEAREAKLELTDFANTPKPIQYKKPSISLLKSVRNTTNPAQVNAELKSKAALLENTLQNFKVDAKVVEVTQGPAVTRYEIQPNTGVKVNSIKALADDIALNLRAKSIRIEAPIPGKAAVGIEVENEKINMVTLREIIDSDEFKQAKSKISFAVGRDISGKSIVADLKSMPHLLIAGSTGSGKSVCINSIITSILYKANPDEVKLVLIDPKVVELGNYNGIPHLLIPVVTEPTKAAAALNWAVAEMTDRYKKFAETGVRDLEGYNNYLKAEDENVETMPQVVIIIDELADLMMAAPSQVEDSICRLAQMARAAGMHLIVATQRPSVDIITGVIKANIPSRIAFAVSSQFDSRTILDMSGAEKLVGKGDMLFNPLGMGKPVRVQGCFVSDEEVHSIIEFVKSQAGDVEYAGEVIESIEKGNVSTSKADDVDELLEEAIECVVSAGQASVSMLQRRFRIGYNRAARIVDEMEARGIVSAQDGARPRQVLLTEEELNEMKENLDVQ*	hallmark_hmm	common_virus		.	0	9840	GCA_015255645.1|JABZNP010000054.1@region_1_9840@tool_cenote_CDS_0003	persistent	indirect	.	.	.	GCA_000526055.1_00495
GCA_015255645.1|JABZNP010000054.1@region_1_9840@tool_cenote	cenote	CDS	5145	6461	GCA_015255645.1	JABZNP010000054.1	GCA_015255645.1|JABZNP010000054.1	GCA_015255645.1_JABZNP010000054.1	GCA_015255645.1|JABZNP010000054.1	GCA_015255645_1_106	GCA_015255645_1_106	5146	6462	GCA_015255645_1_106_4	GCA_015255645_1_106_4	+	9840	.	COG0621	tRNA A37 methylthiotransferase MiaB [Translation, ribosomal structure and biogenesis]. 	MCNKKVFIDTLGCPKNFNDSEFAAGILEENGYEIIDSPEDADIIMVNTCGFINDAKKESIEHIFEMNERRKDGGKLVVSGCLSQRYSEELSKEIPEADCIIGVNQYNKLPEILSDIDNNHVAANSCDLDYLEKTVRKLSDNPYTATLKIAEGCNNTCTYCIIPMIRGKFRSKKMEDIITEAKELANAGCKELILIAQDVTYYGKDLYGKVVLPELLRKLCKIDGIEWIRLMYCYDERITDELIQVMAEEDKICKYIDIPLQHASDNILRLMRRQTTRKSIKETLAKLKAAMPDIHVRTTLIVGFPGETEDDYDQLLELVESERFSRLGVFTYSQEENTVAAEMDNQIDEDIKQIRFDGVMRRQMLISSELNQEKIGKVFDVIVDSMDEDGSFIGRTRFDAPEIDNSVIFTSKNELQPGDIVKVKINDAFDYDIIGEEL*	mmseqs_cdd	nonviral_gene		.	0	9840	GCA_015255645.1|JABZNP010000054.1@region_1_9840@tool_cenote_CDS_0004	persistent	indirect	.	.	.	GCA_002220735.1_00234
GCA_015255645.1|JABZNP010000054.1@region_1_9840@tool_cenote	cenote	CDS	6479	9133	GCA_015255645.1	JABZNP010000054.1	GCA_015255645.1|JABZNP010000054.1	GCA_015255645.1_JABZNP010000054.1	GCA_015255645.1|JABZNP010000054.1	GCA_015255645_1_106	GCA_015255645_1_106	6480	9134	GCA_015255645_1_106_5	GCA_015255645_1_106_5	+	9840	.	PDB:4XVI_A	DNA-polymerase	MADRIIIIDGNSLINRAYFAMQRPMITSEGIYTQGIYGFLNMLNKILDDYTPEYIAVCWDKKSPTFRHLEYKDYKAGRRKMPPELAMQMPLMKEILEAMNIANYEIDGFEADDIIGTISRLGEEKGLEPMIITGDKDALQLASDVTKVIITKKGITDFEIYDRAKMLERYELTPEEFIDLKGLMGDKSDNIPGIPGVGEKTGIKLLKQFGSIANMVQNVDEIENAKLREKVSENVNMALMSRKLAEINRNVPLDFDFSSMKLGKADDKRLIDLYVKLEFNSFLKKLNIENDVKEEVHFFEPENSYEISDGSDFSMLENIEEGCEIIVKVFSDFSHLAKPYISGISMISGKDYYFISGSEESIEAFCNNIKEKNCKIIGHDLIKDVYALMYYGMSDFDISFDTAVAEYIIDPSRSSYDIKTQVLENFHIQIESEEEFAKRTAQVDLLGDNKAEEREFGLLICKYIFELYRTQKAKIDEQNLGRVLYDVELPLIEVLAGMEKEGFKVDKSVLLSYGEDLSKEIDSLTNAIYEAAGMEFNINSPVQLGEVLFTKLELPSGKKTKRGYSTSADVLEKLKDKHPIVSDVLKYRTLTKLKSTYVDGLSTLIASDGRIRPHFQQTVAATGRISCTEPNLQNIPIRNEYGRLLRKAFMPTDGNLLVGADYSQIELRVLAHLSGDAALLEAFNNNDDIHRATASRVFGIEYDKVSDLDRSRAKAVNFGVIYGMSGFGLSDELHISIKEAESYIADYFDKHQAVKEYMDNQVEFCKANGYTETIVGRRRYIKEINSSNFMTRKLGERLAMNSPIQGSAADIIKLAMISVYKALKDCNLRSKLILQIHDELIIDTEIGEENQVSELLVNCMQNAMDLKVKLLSQLNTGRNWYELK*	common_virus_hmm	common_virus		.	0	9840	GCA_015255645.1|JABZNP010000054.1@region_1_9840@tool_cenote_CDS_0005	persistent	indirect	.	.	.	GCA_000526055.1_00497
GCA_015255645.1|JABZNP010000054.1@region_1_9840@tool_cenote	cenote	CDS	9142	9738	GCA_015255645.1	JABZNP010000054.1	GCA_015255645.1|JABZNP010000054.1	GCA_015255645.1_JABZNP010000054.1	GCA_015255645.1|JABZNP010000054.1	GCA_015255645_1_106	GCA_015255645_1_106	9143	9739	GCA_015255645_1_106_6	GCA_015255645_1_106_6	+	9840	.	COG0237	Dephospho-CoA kinase [Coenzyme transport and metabolism]. 	MKVIGITGGIGSGKSTVSDIIKKHKYPLIDCDEISHELTQKDETVLKEIRECFGDDIFDANGMLIRQDLANIIFSDKSKKKILEDIVITRIFEIVEDDLSKHRSVGTNIVFIDAPLLIETGLNRLCDVCVLVTADTETRLDRVEKRDGISRNRILERINNQIPESEKELLADDIIDNSGSIEELNTKVERLINKYVEY*	mmseqs_cdd	nonviral_gene		.	0	9840	GCA_015255645.1|JABZNP010000054.1@region_1_9840@tool_cenote_CDS_0006	persistent	indirect	.	.	.	GCA_000263575.1_00591
GCA_015255645.1|JABZNP010000086.1@region_1_5719@tool_cenote	cenote	CDS	27	806	GCA_015255645.1	JABZNP010000086.1	GCA_015255645.1|JABZNP010000086.1	GCA_015255645.1_JABZNP010000086.1	GCA_015255645.1|JABZNP010000086.1	GCA_015255645_1_141	GCA_015255645_1_141	28	807	GCA_015255645_1_141_1	GCA_015255645_1_141_1	+	5719	.	PFAM:PF07849.10	Major-Capsid-protein	MRKIGSNIYLALIVMFLYLPILTLAVFSFNKAKTMAVWSGFSLKWYRAMLENDQIIEAIRNTFSIAFVAALVSTFIGTFACLGMNKMRKKSQNVLMGLNNIPLLNADIVIGISLMMTFLAFKIDLSWTTVLLSHITFCIPYVILSVLPKIKQLSPSAYEAALDLGASPQYAFYKIVMPEIWPGIFSGFLLAFTMSVDDFVITHFTRGAGINTISTLIYSQVKVGIKPTLFALSTVIFILVLVILIITNILSGIKEGKGR*	hallmark_hmm	common_virus		.	0	5719	GCA_015255645.1|JABZNP010000086.1@region_1_5719@tool_cenote_CDS_0001	persistent	indirect	.	.	.	GCA_000017005.1_00808
GCA_015255645.1|JABZNP010000086.1@region_1_5719@tool_cenote	cenote	CDS	803	1870	GCA_015255645.1	JABZNP010000086.1	GCA_015255645.1|JABZNP010000086.1	GCA_015255645.1_JABZNP010000086.1	GCA_015255645.1|JABZNP010000086.1	GCA_015255645_1_141	GCA_015255645_1_141	804	1871	GCA_015255645_1_141_2	GCA_015255645_1_141_2	+	5719	.	cd13663	The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold. This group represents the periplasmic substrate-binding domain that serves as a primary polyamine receptor of an uncharacterized ABC-type transport system from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, as well as plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	MKKRIVSMLLIFALCLGLAACGGKGEEKENNFKVLKVYSLGDYFDPALIDEFEKETGIKVILDNFDTNEEMYPVISKGTVKYDVICASDYMIERLIKKKLLAKLDYANLPNFENIDQRYMQIASKFDKNNEYAVPHTWGVLGVMYNTKKVREGEIKSWNDLLKKKYDQQIVMPDSVRDNFAIALKARGYSINTKKESELKEATKFLQDQSPLVYKYSNDAARDLAIGGSTDIAIVWNGEVLYSREENSDLDFVVPKEGSEEFLDMWAIPANAEHKKNAEKWIDFMMRKDTALKNYEYLTYTIPNKAVIEKVSKDTESKKYIFPDESIISKCESLTDLGTKYDDMYNKYWKKFKSN*	mmseqs_cdd	nonviral_gene		.	0	5719	GCA_015255645.1|JABZNP010000086.1@region_1_5719@tool_cenote_CDS_0002	persistent	indirect	.	.	.	GCA_000215365.2_00259
GCA_015255645.1|JABZNP010000086.1@region_1_5719@tool_cenote	cenote	CDS	1950	2978	GCA_015255645.1	JABZNP010000086.1	GCA_015255645.1|JABZNP010000086.1	GCA_015255645.1_JABZNP010000086.1	GCA_015255645.1|JABZNP010000086.1	GCA_015255645_1_141	GCA_015255645_1_141	1951	2979	GCA_015255645_1_141_3	GCA_015255645_1_141_3	-	5719	.	COG2515	1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase, PLP-dependent ACC family [Amino acid transport and metabolism]. 	MLYGHDKVNILMQPSQITYLKNVSEDLGINLYLKRDDITALGTGGNKLRKLEYLVKDALDKGATMLLTTGGAQTNHGRLTAASAARFGLKSAIVAVDEYPGEISANLILDGIMNCNVYLVHNDGTRTKQEVAEEAFAKITKEWEDKGEKVYFICTGGSNNIGMLGYYDCALELDKQLKEMKLEDPRVITTVGSMGTYMGLFAGQKNEDLGFRLTGIAIEPFPDGIEKTAIEYYNSCKNQFGMKFDAKESDFDLTCDYHRGAYNNPCKEVREAIYYLGSKEGIIMDPCYTGKTFAGILEMVEKGEIAKGENVVMIHTGGIPGIYTKHHRLEFEKELEKYIHII*	mmseqs_cdd	nonviral_gene		.	0	5719	GCA_015255645.1|JABZNP010000086.1@region_1_5719@tool_cenote_CDS_0003	cloud	indirect	.	.	.	GCA_009789555.1_02352
GCA_015255645.1|JABZNP010000086.1@region_1_5719@tool_cenote	cenote	CDS	3213	4838	GCA_015255645.1	JABZNP010000086.1	GCA_015255645.1|JABZNP010000086.1	GCA_015255645.1_JABZNP010000086.1	GCA_015255645.1|JABZNP010000086.1	GCA_015255645_1_141	GCA_015255645_1_141	3214	4839	GCA_015255645_1_141_4	GCA_015255645_1_141_4	+	5719	.	6AGS_A	Malic Enzyme, OXIDOREDUCTASE	MKSREILNNPFLNKGTAFTMEERKKLGLIGLLPPYVQTIEEQAAQTYAHMEKKESMLEKRLFLMEIFNTNRTLFYYLFSQHLEEFNPIVYDPTIAETIENYSDLFVDPQYAGYLDINHPEYIEETLRNAAGNRNIRLIVVTDAEEILGIGDWGTNGVDISVGKLMVYSGAAGIDPSMVLPLVIDAGTNRKALLENPNYLGNRHERITGDKYYNFIDEFVQTAEKLFPKLYLHWEDFGRSNAANILEKYRKKIPTFNDDIQGTGIVTLGGLYGALEISGEKLTDQVYVCYGGGTAGAGIASRVLREMVNEGLSEEEAYKHFFMVDKQGLLFDDMDDLTHEQRPFAKKRSDFTNAEKLTDLLEVVKTVKATILVGTSTNPNSFTKEIVEAMCENSAHPMIFPLSNPTKLAEASAENLIKWSDGKAFVATGIPADNVSYKGVEHVIGQANNALIYPGLGLGMLASEASLLTDEMIGAAARALGGIIDMKKPGAPVLPPFKYVAEVSIKVAEAVANKAQEQGLARCEEKDMAKAVHELKWYPKYR*	hhsuite_tools	nonviral_gene		.	0	5719	GCA_015255645.1|JABZNP010000086.1@region_1_5719@tool_cenote_CDS_0004	persistent	indirect	.	.	.	GCA_000526055.1_00299
GCA_015255645.1|JABZNP010000086.1@region_1_5719@tool_cenote	cenote	CDS	4933	5400	GCA_015255645.1	JABZNP010000086.1	GCA_015255645.1|JABZNP010000086.1	GCA_015255645.1_JABZNP010000086.1	GCA_015255645.1|JABZNP010000086.1	GCA_015255645_1_141	GCA_015255645_1_141	4934	5401	GCA_015255645_1_141_5	GCA_015255645_1_141_5	+	5719	.	COG0679	Predicted permease [General function prediction only]. 	MNILLTSIESIIPIIIIIVLGYVLQCRGWFEDSFGANLSRLIMNVALPASIFVSVMKYLTLDKLISLSDGLIYTFGAFILGYIVAFITVKVFKVRPGRRGTMINTFVNANTIFIGLPLNIALFGNEALPYFLIYYITNTVSTWTLGVYLMTRGRK*	mmseqs_cdd	nonviral_gene		.	0	5719	GCA_015255645.1|JABZNP010000086.1@region_1_5719@tool_cenote_CDS_0005	persistent	indirect	.	.	.	GCA_001269845.1_03599
GCA_015255645.1|JABZNP010000086.1@region_1_5719@tool_cenote	cenote	CDS	5377	5718	GCA_015255645.1	JABZNP010000086.1	GCA_015255645.1|JABZNP010000086.1	GCA_015255645.1_JABZNP010000086.1	GCA_015255645.1|JABZNP010000086.1	GCA_015255645_1_141	GCA_015255645_1_141	5378	5719	GCA_015255645_1_141_6	GCA_015255645_1_141_6	-	5719	.	.	hypothetical protein	DWITKVLYSAVGIPFAVKVRSAIITAGPSINLPINVMIVSLSIVMVFSPAFDRTIPMYRRDSGVTRLPIYVRVLVAKLGTGILITKNTRAIKNPTSGAGRSFFQSNLLAPSCH*	.	hypothetical_protein		.	0	5719	GCA_015255645.1|JABZNP010000086.1@region_1_5719@tool_cenote_CDS_0006	infer_flexible	indirect	.	.	.	no_good_uniDB_hits