core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote	cenote	CDS	38404	38865	GCA_015255825.1	JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825.1_JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825_1_17	GCA_015255825_1_17@C3	1	462	GCA_015255825_1_17_35	GCA_015255825_1_17_35	+	50748	.	COG0691	tmRNA-binding protein [Posttranslational modification, protein turnover, chaperones]. 	MANKQRKMIANNKKARHDYFIEETYEAGIVLTGTEIKSARLGKVSIKESYARIEKEEMMIYGMNISPYEQGNRFNVDPLRPRKLLLHKREIRKLIGATKLKGLTLVPLTMYINEAGLAKLEIALARGKKNYDKRDAIAKRDASRNMERAMKQR*	mmseqs_cdd	nonviral_gene	C3	6673	38404	45077	GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote_CDS_0001	persistent	indirect	.	.	.	GCA_000292935.1_00276
GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote	cenote	CDS	39541	40401	GCA_015255825.1	JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825.1_JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825_1_17	GCA_015255825_1_17@C3	1138	1998	GCA_015255825_1_17_36	GCA_015255825_1_17_36	+	50748	.	pfam01972	Serine dehydrogenase proteinase. This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan.	MINPIILKTSQMIKDLLEELENLYDADCLYLNGPIEPNLLNHAREVIDLTRKADSHHEKLCVILTTNGGDAITVERLVNIFRYNYSEVDFIIPDHAYSAGTILCMSGDNIHMDYNSVLGPIDPQVQNKEGRFVPALGYLGKIEDLLVKAQAGTISEAEFLILKDFDLAEISLYEQARDLTEDLLVKWLVQFKFKNWETHSSNGTGVSEDEKRERAKEIANALSDYSRWKSHGRPLSIEVLSELKLQIEDFGQSPDEQNLILECHNMCEDFMRLQQTNGIIFTRRTL*	mmseqs_cdd	nonviral_gene	C3	6673	38404	45077	GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote_CDS_0002	cloud	indirect	.	.	.	GCA_000153625.1_00287
GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote	cenote	CDS	40401	40595	GCA_015255825.1	JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825.1_JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825_1_17	GCA_015255825_1_17@C3	1998	2192	GCA_015255825_1_17_37	GCA_015255825_1_17_37	+	50748	.	.	hypothetical protein	MKKRNMVDAIKKISGTKIQSNRVPLIGALSITEKRGFQGLSINDQRLCNYGKNCSYSTGNNSYN*	.	hypothetical_protein	C3	6673	38404	45077	GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote_CDS_0003	cloud	indirect	.	.	.	GCA_015255825.1_00743
GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote	cenote	CDS	40641	42386	GCA_015255825.1	JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825.1_JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825_1_17	GCA_015255825_1_17@C3	2238	3983	GCA_015255825_1_17_38	GCA_015255825_1_17_38	+	50748	.	CDD:pfam06152	minor-capsid-protein	MSFFILTKQTKRVMLSPEYLAQCTSYLLGMMDLINEQLVADIARRIVKMGALTESAQFEAEKLTQQNILYKDIVNSISKVSGLTEAEITRVFEDVNFENMESENLRAAIAGKTPLDHASNVAMGNLLSSHIRKTKGVVRNLTRTTASQGQNAFINAVNLANMQVSSGAFTYDFAIKNAIKQVAKSGLTVQYPTGHIDKLDVAVRRAVLTGVNQSSAELNMLYCDEIGTDLVEVTAHSGARPSHADWQGGVYSLSGKSKGYGSFYDITGYGTGEGLCGWNCRHSFYAYYEGTERTYSKEYLDSLDSKTYEYGGDTYTNYEAGQKQRAYEREIRAEKRYLAGLNSAYNEAKDDTLRQSIKYEMESTAVNLKRKEAELKHFCKATDRRVDTTRTQVHAVKDASGKIVGFDRSAAQRARTVAIKHHTDWLKSIGAESSELKVLDKYYDAKYNNSPAYKNLINYRFLVSKGEISPLLSYKVYDAYSRAVQNNLVGVQTPLGLQIEGYTSHFVGRVIGYSALNRKYNRPGVSIEDLLDCLKVGRVGKEQVNKAGERSILLKNDKCNIAINPDTKTLIQCNPRKLVKR*	hallmark_hmm	common_virus	C3	6673	38404	45077	GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote_CDS_0004	shell	indirect	.	.	.	GCA_015255825.1_00744
GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote	cenote	CDS	42398	42604	GCA_015255825.1	JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825.1_JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825_1_17	GCA_015255825_1_17@C3	3995	4201	GCA_015255825_1_17_39	GCA_015255825_1_17_39	+	50748	.	.	hypothetical protein	MESVWKYKAEDFKYLQKYFDVDFLNSDANILDALNEKIIEVGFDDKLEFYNDEGKKLQEIYDNIYYMN*	.	hypothetical_protein	C3	6673	38404	45077	GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote_CDS_0005	cloud	indirect	.	.	.	GCA_000238135.1_01335
GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote	cenote	CDS	42618	42950	GCA_015255825.1	JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825.1_JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825_1_17	GCA_015255825_1_17@C3	4215	4547	GCA_015255825_1_17_40	GCA_015255825_1_17_40	+	50748	.	pfam09639	YjcQ protein. YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is expressed in bacteria and also in viruses. It appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown. However, it is thought to be a prophage head protein in viruses.	MPKDDYFRIVFEILKDLYVAKKKAEPVNLIKISADYLKIPQGYRDTILSEMLEAGYVKGFRVKEYINGIQIMDLEDIDITPVGIEYLKENGMMKKVMEYLKTIGEFIPMI*	mmseqs_cdd	nonviral_gene	C3	6673	38404	45077	GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote_CDS_0006	cloud	indirect	.	.	.	GCA_019929305.1_01688
GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote	cenote	CDS	43058	43534	GCA_015255825.1	JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825.1_JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825_1_17	GCA_015255825_1_17@C3	4655	5131	GCA_015255825_1_17_41	GCA_015255825_1_17_41	+	50748	.	PFAM:PF06810.10	minor-structural-protein	MYTEEKQPRIKAYRERKNIMKREVIENLLKGLGVAEDKVKEAVDTIMTENGNDIERYKTSETNLKSLLKTANETLEKFKDVNIDGLKGEVQKYKDAATEAESNSKAEIERLQFGYALDGALRTAGAKNSKVVRALLDEADFNTSAGSKGNLGSLKGSI*	hallmark_hmm	common_virus	C3	6673	38404	45077	GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote_CDS_0007	cloud	indirect	.	.	.	GCA_000238115.1_00627
GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote	cenote	CDS	43798	44157	GCA_015255825.1	JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825.1_JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825_1_17	GCA_015255825_1_17@C3	5395	5754	GCA_015255825_1_17_42	GCA_015255825_1_17_42	+	50748	.	.	hypothetical protein	MLDGSNVYIDGRSLNRVLNMHGHEMSKDEFSFIADTSKSLDYYADNLKRHENSLILLKKLPIKDERDMECIFVKHGNSKVIHFHKMGNRKLRKLEKESNLIDIRRYLFYYIGNIKWFRG*	.	hypothetical_protein	C3	6673	38404	45077	GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote_CDS_0008	cloud	indirect	.	.	.	GCA_019929575.1_00128
GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote	cenote	CDS	44393	44500	GCA_015255825.1	JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825.1_JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825_1_17	GCA_015255825_1_17@C3	5990	6097	GCA_015255825_1_17_43	GCA_015255825_1_17_43	+	50748	.	.	hypothetical protein	MKIKVTKRPTTTKEKVIGGAVWIAVIGCIAYLIIK*	.	hypothetical_protein	C3	6673	38404	45077	GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote_CDS_0009	shell	indirect	.	.	.	GCA_015255705.1_00146
GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote	cenote	CDS	44570	45076	GCA_015255825.1	JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825.1_JABZNH010000007.1	GCA_015255825.1|JABZNH010000007.1	GCA_015255825_1_17	GCA_015255825_1_17@C3	6167	6673	GCA_015255825_1_17_44	GCA_015255825_1_17_44	+	50748	.	PRK10140	N-acetyltransferase. 	MQNIIIREAIPTDAAACMEHSRRVGSETDNLSFGADGFPISLEGEKEYIEMMHEAPRSVLYVAIKDGEVVGTVSLNGLPRRMSHRAELGITVLMSEWGKGLGSRLMETVIDFAEKSGIEIIELAVRSDNERAIRLYKKHGFESIGVYKSYFKIDEKYVDFKLMNLYFT*	mmseqs_cdd	nonviral_gene	C3	6673	38404	45077	GCA_015255825.1|JABZNH010000007.1@region_38405_45077@tool_cenote_CDS_0010	persistent	indirect	.	.	.	GCA_000213995.1_04315