core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_015261245.1|JABZVB010000082.1@region_1_9819@tool_cenote	cenote	CDS	1	191	GCA_015261245.1	JABZVB010000082.1	GCA_015261245.1|JABZVB010000082.1	GCA_015261245.1_JABZVB010000082.1	GCA_015261245.1|JABZVB010000082.1	GCA_015261245_1_152	GCA_015261245_1_152	1	192	GCA_015261245_1_152_1	GCA_015261245_1_152_1	-	9819	.	TIGR03423	penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]	MRKLGIIVSLFVFSLTIQGHILPKDKHLTVNQGLQKLANKLLEGKQGSIVAIEPATGEVLCMAS	mmseqs_cdd	nonviral_gene	NaN	.	0	9819	GCA_015261245.1|JABZVB010000082.1@region_1_9819@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_015261245.1|JABZVB010000082.1@region_1_9819@tool_cenote	cenote	CDS	698	1618	GCA_015261245.1	JABZVB010000082.1	GCA_015261245.1|JABZVB010000082.1	GCA_015261245.1_JABZVB010000082.1	GCA_015261245.1|JABZVB010000082.1	GCA_015261245_1_152	GCA_015261245_1_152	699	1619	GCA_015261245_1_152_2	GCA_015261245_1_152_2	-	9819	.	CDD:pfam05119	Small-Terminase	MQNKASEDGTMMSFREISTYLRSHKDIVEGELYVGSDHIVALDSAPFFRLIPNNPHNVSFDAARLVLIRKGSCDITIGPMKFNCRPGDIVFINSGVVINDDEVDKNTKLEGFAVSKSLLIKSFGGRLPELLLAPDMCFCVHPNSKERHVLKQIFHTLYSLSQLSEATNEAICSLIVSAYCFVEALHKQNFNLDGMYKSRNKLVAEQFIKLVNNHAKHQHELDFYASKLCLTPHYLGMIVKRETNFTAKEWIDNTLIVQIQSELKYTNNSLKVIASDFDFISLSAFCKFYKRKTGHTARSYRMKRNE*	hallmark_hmm	common_virus	NaN	.	0	9819	GCA_015261245.1|JABZVB010000082.1@region_1_9819@tool_cenote_CDS_0002	shell	direct	high	920	0.999	GCA_015261245.1_01731
GCA_015261245.1|JABZVB010000082.1@region_1_9819@tool_cenote	cenote	CDS	1770	1970	GCA_015261245.1	JABZVB010000082.1	GCA_015261245.1|JABZVB010000082.1	GCA_015261245.1_JABZVB010000082.1	GCA_015261245.1|JABZVB010000082.1	GCA_015261245_1_152	GCA_015261245_1_152	1771	1971	GCA_015261245_1_152_3	GCA_015261245_1_152_3	-	9819	.	.	hypothetical protein	MKRKAYTRPVTHYFDLVAEHLMDDSQIVHVSVPIDPSHELDPNDVGAKDNPFWADDEWPGYSPWDD*	.	hypothetical_protein	NaN	.	0	9819	GCA_015261245.1|JABZVB010000082.1@region_1_9819@tool_cenote_CDS_0003	shell	direct	high	200	0.995	GCA_015261245.1_01732
GCA_015261245.1|JABZVB010000082.1@region_1_9819@tool_cenote	cenote	CDS	2031	5531	GCA_015261245.1	JABZVB010000082.1	GCA_015261245.1|JABZVB010000082.1	GCA_015261245.1_JABZVB010000082.1	GCA_015261245.1|JABZVB010000082.1	GCA_015261245_1_152	GCA_015261245_1_152	2032	5532	GCA_015261245_1_152_4	GCA_015261245_1_152_4	-	9819	.	sd00036	leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	MRTSRFLLFILLALFYANTVSAIIVGNQFTRDGITYEVTFMDVAHDGHPARYEVKFVSSNLAGALSIPETVADLNNQYTFKVTAIAANSTVPNATSVTIPSNVTTINANSFKGSNITNINIPATVTDIKDGAFSYMEGLKAITVDAGNSKYSATDGVLYENKAEGKYLSAYPVAKDGTPFGVGGLEFTVPEGVVGVSTNGFQKAGKLSRINLPASLKYLPTNQEGNGFTSATNLKEIKVAATNPNFQDIDGVVVTKDGKTLVSYPNNKGGIKDTNYDAPLSIDPTHAKRPGEYYEIPAGVEVIKDGAFAQVQTITAVKLNDVKTIKKGAFYSVRNLRNVEISSSVTSIEDGAITGSPDLLSFKIDAGNPNYMADSEGVIYNKAGTELVLYPAGRAGEYTTLPTTQTIRNRAFYQAQKVTKVNFNSGLTDIGNDCFQAAAALKEITFTAPSTLKNIGTFSFYGTGLEHLTIPASVENIGWNSFSPTKLKTVEVEDGSKLKTIARDAFANNTDLEEFKFLGSSDLEKIEKGAFKGNTKLKEFTIPKNVTTIERGAFDGNSAMEKVTFDQPAKIQTIGEGAFQGAQALKRIELPNTVTTISKDAFNTCKSLTEIVIPSSVTSIDPTGFQECGKLEKFTVDQNNPVYSSVDGFLLSKDKKVLKAFPPAKANTYYTLLPPTIEEIGAQAFYYVQELENVTIPEKVTKIDKFAFDRTAKLNTIAFLGQTPITNVDPSAFNPANVNTHDIQISIRKNAQAAFASNAFWSGFKQLGISFFEEVNGTGNGETEFFPLSQKAVMVVDTKADVFTYVVPKTVTNSTDNHVYEIRLWGDYALKDSPATSKFEEVVFKNQLDYMGLNAFDKADGSSSVKRIFFTSNNPTKDMSATKWEYGNTQHEFNSTLKIYVKKSALDDYKSATGHEHAGWGRYANQVDYKIPNDVKVQHFFATFAREFDADLGIYKREKGGSGSDVGAFIVKSSNVFALDNGTTLFKMTSINGTGSNVNRYNYVPANNGVILATLNGSATPADFYYAIGEEDNAKYTPNAGEQNIVEGVTVKDKSIQSTAAAPLFGMSASKGTLLKIPATPFNIKAHKAFVKGITGAVGSAKVSLVFDDEWMNGNIHDGTGNTAGISDVESNTKKQDGVYYNLQGQRVSNPQHGIFIQNGKKVVLP*	mmseqs_cdd	nonviral_gene	NaN	.	0	9819	GCA_015261245.1|JABZVB010000082.1@region_1_9819@tool_cenote_CDS_0004	shell	direct	high	3500	1.0	GCA_015261245.1_01733
GCA_015261245.1|JABZVB010000082.1@region_1_9819@tool_cenote	cenote	CDS	6139	7677	GCA_015261245.1	JABZVB010000082.1	GCA_015261245.1|JABZVB010000082.1	GCA_015261245.1_JABZVB010000082.1	GCA_015261245.1|JABZVB010000082.1	GCA_015261245_1_152	GCA_015261245_1_152	6140	7678	GCA_015261245_1_152_5	GCA_015261245_1_152_5	+	9819	.	pfam03321	GH3 auxin-responsive promoter. 	MSLTSIAGKLFLPRQKDLERYATEAVKMQQKVLKRLIEHGRHTEYGRKFGMQSSRYEDFAQGIPVVSYEELKGDIDRMRHGEANVLWPGRVKWYAKSSGTTNDKSKFIPVSKDGLNHIHYAGGADVVALYLRNNPQSRLFDGRSLILGGSHSPNYNVANSLVGDLSSILIENINPLANLVRVPKKSTALLSDFELKRDLIARECLHKNVTNISGVPSWMLSVLVRVMELSGKKHLEEVWPNLEVFFHGGIAFTPYRPQYEMLITSPKMHYMETYNASEGFFGIQSDFQDKSLLLMTDYDVFYEFIPMDEFGTDNPTIVPLEGVQTGINYAMVITTSCGLWRYVIGDTVSFTSTNPYKFVITGRTKYFINAFGEELIMDNAEKGLAYACAQTGAEISEYTAAPVFMDSKAKCRHQWLIEFAKAPDSLERFATLLDKKLQEINSDYEAKRFHDITLQPLEVVLARSGQFNDWLKAKGKLGGQHKIPRLSNSRKVIEEVMNISPSPSQGEERLSN*	mmseqs_cdd	nonviral_gene	NaN	.	0	9819	GCA_015261245.1|JABZVB010000082.1@region_1_9819@tool_cenote_CDS_0005	persistent	direct	high	1538	0.999	GCA_015261245.1_01734
GCA_015261245.1|JABZVB010000082.1@region_1_9819@tool_cenote	cenote	CDS	7709	9817	GCA_015261245.1	JABZVB010000082.1	GCA_015261245.1|JABZVB010000082.1	GCA_015261245.1_JABZVB010000082.1	GCA_015261245.1|JABZVB010000082.1	GCA_015261245_1_152	GCA_015261245_1_152	7710	9818	GCA_015261245_1_152_6	GCA_015261245_1_152_6	+	9819	.	pfam13205	Bacterial Ig-like domain. 	MWKYIKKIKRFANRLQLGYPGLTKEKRSQNTAQVSPSLWVLPSLKGIGGGLSLLLTITIGGVLTSCARMGNPDGGWYDETPPKVLGATPADKATEVKAQKVKISFDEFVKIDNPTENVIVSPPQLQAPEIKATGKSIEVKLLDSLKANTTYTIDFSDAISDNNEGNPLGNYTYSFSTGAEIDTMEVSGYVVAAENLEPVKGILVGLYANLADSAFEKQPMLRVSRTDSRGHFVIKGVKRGTYRVYALQDVDGNYQFNQKSEMIAFNHELIKPSVMDDTRQDTLWSDSLHIADIKRVGYAHFLPDNITLCAFHEVLTSRYLLSVTRNEANHFAVNFSYGNPKLPQIKGLNFNAHDAFIAIPNAKRDTIDYWLRDTALVNQDTLRMEMTYLMTDSAGQLVSQTDTLEVLSKQPYERRMKQLKATYEKWQKQQEKLKKKGEDYQTEMPRPTLAIRMQNTNEIDPEKRLQLQFETPISTIDTTKVHLYTKVDSLWYRANYQLLPAARRNAEGHFVRPDSLKYGMNYEISADWKPGQDYSFETDSTAFTDIYGAVTPKYKQGFKVKGDDEFGSLVITLTGLDGQPCIVQLLDRNDKVIKEVAAEHQQAEFYYLKPETYYLRLFVDSNHNGIWDTGDYAKDRQPEAVYYYPGKIECKAKWDLTESWNPTSTPLYQQKPGAITKQKADKQKTIRRRNAERAKQMGLPYTP	mmseqs_cdd	nonviral_gene	NaN	.	0	9819	GCA_015261245.1|JABZVB010000082.1@region_1_9819@tool_cenote_CDS_0006	.	unmatched_CDS	none	0	0	.