core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote	cenote	CDS	734	1105	GCA_015263255.1	JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255.1_JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255_1_24	GCA_015263255_1_24	735	1106	GCA_015263255_1_24_1	GCA_015263255_1_24_1	+	8181	.	3EN8_A	uncharacterized NTF-2 like protein	MFNIYEFYDSILNQNASEIKKFFNEDAYIDWHNTNERFTVDEFIEVNCTYPDKWGGEVERVEQIGNLIIAVAKVINVFEKSSFYVNSFILLENGKISKLDEYWGDNGEIPQWRMIKNIGVKIK*	hhsuite_tools	hypothetical_protein		.	0	8181	GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote_CDS_0001	cloud	indirect	.	.	.	GCA_938044115.1_01136
GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote	cenote	CDS	1105	1995	GCA_015263255.1	JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255.1_JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255_1_24	GCA_015263255_1_24	1106	1996	GCA_015263255_1_24_2	GCA_015263255_1_24_2	+	8181	.	CDD:PHA00432	internal-virion-protein-	MNSFCKNKNLSNYLKLIFLVIMFLFGLVFKASTRDYILLVVLVLIEFAFKIGFNYINSISYTISNKFYKKILKMLNIINFEFDFLFVYLFFDSIIKFNIKYLVGIIFGILVMSIIFFSLFVSLNLKYEVLTFRMANESDRESILEIYLEGAEALKTDGVDQWQGQYVPSFKDIDEHLGIDLYVLEYHRKIVSTACLVEGIDEDYENIKGKWNTSIPYISIHKVATSNKYKKQSFAKKMMSYIENLAKRKRMDLRIDTHKDNKKMRNFIISCGYKYAGEVVLQGELERLAYDKVIVK*	hallmark_hmm	common_virus		.	0	8181	GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote_CDS_0002	persistent	indirect	.	.	.	GCA_023147965.1_01527
GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote	cenote	CDS	2054	2695	GCA_015263255.1	JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255.1_JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255_1_24	GCA_015263255_1_24	2055	2696	GCA_015263255_1_24_3	GCA_015263255_1_24_3	-	8181	.	PRK13197	pyrrolidone-carboxylate peptidase; Provisional	MKILVSGFDPFGGEKINPAIESVKLLPDEIKGAKIIKVEIPTVARKSLKKLEEVIEIEKPDVVLSVGQAGGRTDISVERVGINMDDFRIKDNEGNQPIDEKIAKDGPDAYLVTIPIKAMVQKMIENKIPASVSNTAGTFVCNHVCYGMAHLASTKYPNMRTGFVHIPFLPEQVVDKRNMPSMPLELIAKGLEYAIEAIVENKEDIKVEGGATH*	mmseqs_cdd	nonviral_gene		.	0	8181	GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote_CDS_0003	persistent	indirect	.	.	.	GCA_000006885.1_02074
GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote	cenote	CDS	2707	3708	GCA_015263255.1	JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255.1_JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255_1_24	GCA_015263255_1_24	2708	3709	GCA_015263255_1_24_4	GCA_015263255_1_24_4	-	8181	.	COG3817	Uncharacterized membrane protein [Function unknown]. 	MLKWISSNTFFIDEFIYILCGLISILTAFRALKNKESRIGTFIFWFLVGIIFAFGGFLIKYLPDQGGIIVGAMLVACGFLTLTKQVKIGEFNPPSEEERRKNADKVGWKIFIPALIMAGLGFFMSQFKSFKIVIGTDAKGKDLIFGFSTAQVLGISAIIALILAIIIAKPKVEDMKEDTSRLLMQVGSSSLLPQLLGALGIVFTAAGVGNVIGEFAGGIVGGGGRVAGVVAYCLGMVIFTMIMGNAFAAFTVITIGVGIPFVIAQGGNPAVVGALGMTCGYCGTLLTPMAANFNIVPAAILETKDKYTIIKTQAPMALAMILVHIVLMLVLAF*	mmseqs_cdd	nonviral_gene		.	0	8181	GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote_CDS_0004	cloud	indirect	.	.	.	GCA_901421975.1_02675
GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote	cenote	CDS	3689	4378	GCA_015263255.1	JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255.1_JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255_1_24	GCA_015263255_1_24	3690	4379	GCA_015263255_1_24_5	GCA_015263255_1_24_5	-	8181	.	COG3819	Uncharacterized membrane protein [Function unknown]. 	MQNYLVLIGIVIIVVGFVLKLDVISVVLIAGFATGLAGGKGILEILNIIGKGFVENRYMSLFFTTLIVIGIMERNGLKEKAADGIRKIKGASAGLVIWLYLFIRWLAAIFSLRLGGHVQFVRPLILPMAEGAATKTVDLTETKLEDLKGLAGAVENYGNFFGQNVFPVASGVLLIASTLKDKGYAVEGSDIAYYSLFVGIAMIILSVIQCFLFEMKLRKDGVKNVKVDK*	mmseqs_cdd	nonviral_gene		.	0	8181	GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote_CDS_0005	persistent	indirect	.	.	.	GCA_000743455.1_02737
GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote	cenote	CDS	5005	6147	GCA_015263255.1	JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255.1_JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255_1_24	GCA_015263255_1_24	5006	6148	GCA_015263255_1_24_6	GCA_015263255_1_24_6	+	8181	.	TIGR01977	cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. [Unknown function, Enzymes of unknown specificity]	MIYFDNAATTKNKPAEVIDAVVNALKNFGNSSRGVYEESLSADRIVFETRKKIAKMFNVGNSRQVVFTKNATESLNIAINGLFLENDHIITSVSEHNSVLRPIHYLKEKGVEVSYIGVSEKGVLNFEEIPSLIKANTKAIVITHASNVTGNITDLKKYGDFCRENNLLFVVDASQTAGAFDIDMKEMNIDVLCFTGHKSMLGPQGTGALCVREEVYIRPFIVGGSGTHSYDEFQPDKMPTRLEAGTLNSHGIAGLHASIDYLLKNKIENLTKRALELSRKFYDGVSKFPEVTVYGDFETEFRAPIVSLNISDMDSSEVSSILYEEYKISTRPGAHCAPLIHKALGTVEQGMVRFSFSHSNTFDEVELAINAIKKIIEDRR*	mmseqs_cdd	nonviral_gene		.	0	8181	GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote_CDS_0006	persistent	indirect	.	.	.	GCA_013394875.1_01067
GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote	cenote	CDS	6152	7255	GCA_015263255.1	JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255.1_JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255_1_24	GCA_015263255_1_24	6153	7256	GCA_015263255_1_24_7	GCA_015263255_1_24_7	+	8181	.	TIGR04112	putative selenium metabolism protein, YedE family. For 79 of the first 80 reference genomes in which a member of this protein family, YedE, is found, a selenium utilization system is found, spread over a broad taxonomic range (Firmicutes, spirochetes, delta-proteobacteria, Fusobacteria, Bacteriodes, etc. This family is less widespread than YedF, also involved in selenium metabolism.	MRFFNTKKGLLTLGIIAGLGAALLAYLGNPKNMAFCIACFIRDTAGAMKFHNAEVVQYFRPEIVGIILGAFLISLFTKEYRSTGGSSPVIRFFLGVIMMVCALVFLGCPLRMILRMSAGDISSYVGFVGFAAGVATGAFFLRKGFSLGRAYPVKKENGYVLPVVVAGLFALVIAVPSLYAFSQKGPGSMHAVWYAALGVGLVFGIIAQKSRMCFAGSLRDIILLKDFRLFSVIGGIFIVMLIYNIATGNFKFVAFGPVAHAQTIWNILSMYAVGFCAVLLGGCPLRQLVLAGTGSSDSVITVLGMFVGAAFAHNFKLAGAAAAVENVEKGIKAAAGGPGINGQIFVIVSIVVLFIVALCGLKKEKNR*	mmseqs_cdd	nonviral_gene		.	0	8181	GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote_CDS_0007	persistent	indirect	.	.	.	GCA_002998925.1_01405
GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote	cenote	CDS	7273	7479	GCA_015263255.1	JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255.1_JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255_1_24	GCA_015263255_1_24	7274	7480	GCA_015263255_1_24_8	GCA_015263255_1_24_8	+	8181	.	cd03421	SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain.  The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA  (also known as UvrY,  and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA.  A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium.  Moreover, despite a low primary sequence similarity,  the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.	MKELDVRGLSCPEPVLILQDALKENKNETYKVLASEAHVVKNITHFANSQGKKTSVKEVGLDFEIIVE*	mmseqs_cdd	nonviral_gene		.	0	8181	GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote_CDS_0008	persistent	indirect	.	.	.	GCA_900095855.1_01278
GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote	cenote	CDS	7479	7703	GCA_015263255.1	JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255.1_JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255_1_24	GCA_015263255_1_24	7480	7704	GCA_015263255_1_24_9	GCA_015263255_1_24_9	+	8181	.	pfam11823	Protein of unknown function (DUF3343). This family of proteins are functionally uncharacterized. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.	MKETKLYTTFYTTAEAMATESVCKENNLSGKLVPVPRVLSAGCGIAWECSPILKPTLLELLEKEDIEWEECKEI*	mmseqs_cdd	nonviral_gene		.	0	8181	GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote_CDS_0009	persistent	indirect	.	.	.	GCA_000160635.1_01831
GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote	cenote	CDS	7879	8178	GCA_015263255.1	JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255.1_JABZRG010000031.1	GCA_015263255.1|JABZRG010000031.1	GCA_015263255_1_24	GCA_015263255_1_24	7880	8179	GCA_015263255_1_24_10	GCA_015263255_1_24_10	+	8181	.	PF07786.12	Protein of unknown function (DUF1624)	MIKNPKMKDRNYGIDLLRIVTMFMIVNLHVFWYGGILRSENLYFLSAKYNIVWILEIICYVAVNCYALISGFVGIESRYKYSNIVLLWLRVVFYSISLYL	hhsuite_tools	hypothetical_protein		.	0	8181	GCA_015263255.1|JABZRG010000031.1@region_1_8181@tool_cenote_CDS_0010	cloud	indirect	.	.	.	GCA_002096935.1_00167