core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1183788	1184387	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	1	600	GCA_016026915_1_1_1104	GCA_016026915_1_1_1104	-	2504445	.	.	hypothetical protein	MFVKEEKPVNKIVEILRKTSSHLFKFHGEVAMHLFLNDDFILPSKIDICVERKKLLEIIRVIPEEFTIHYYDNQLYERLRESLSLSDVEHVKVFKNDTEVMTIFVYDVVNDEWLFRLDHHIRLPKNNIYFHSLSWNVDYIKPEIVLMYDLMSEQKYHQFSNYKAVIDSLSYYQFYILKLVVGEQRIKKAIVNSSTKKIS*	.	hypothetical_protein	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0001	persistent	direct	high	599	0.998	GCA_016026915.1_01182
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1184714	1185586	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	927	1799	GCA_016026915_1_1_1105	GCA_016026915_1_1_1105	+	2504445	.	.	hypothetical protein	MSLTIILSIIIIILIMAMVLNQKFMKDRVETEEYARNQLISKNSILSEENLSLKNQMLSTNNDVGQHAFKNAKRELRKILNRFKEEGRLRSYTIVPTSNLAVKHPLFEYARSFDFIIITDVGLINVDVKNWNQKTFYHFDVPDQHLEEGQPQYNTEKVVGHYISNRYHSQFKTTRSGVYTFIEILQDNRVIYEFYDHDPYDKAANNAKALKDKIENDYNFKIQSIGVIYFSDGSVNIIEGSDESDKYVDTVSTPISLEKVIEEAIDLSKHPLTDKQIEEISESFKQHMNN*	.	hypothetical_protein	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0002	persistent	direct	high	872	0.999	GCA_016026915.1_01183
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1186322	1186843	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	2535	3056	GCA_016026915_1_1_1106	GCA_016026915_1_1_1106	-	2504445	.	PDB:1RKN_A	Thermonuclease	MSSLLVVAMIGILVIIFQFVNHSGPFSDSESQHQSDNSNLNGKDKVYVKRVVDGDTFVAQKNGEEIKVRLIGVDTPETVKPNTPVQPYGKQASNYTKKYLTHQNVYLEYDKEKTDRYGRTLAYVWLKNGDMFNESLVKKGLAREKYFSPNGKYRDTFVNAQDEAKKRKLNIWS*	common_virus_hmm	common_virus	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0003	persistent	direct	high	521	0.998	GCA_016026915.1_01184
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1187002	1187211	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	3215	3424	GCA_016026915_1_1_1107	GCA_016026915_1_1_1107	+	2504445	.	.	hypothetical protein	MMLGVKEMDTSNENKITIIAVIVAIIVGVVLQIVFKLPLIVSLVGSVFLGMFVGFIVYLIQSFRRKKKN*	.	hypothetical_protein	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0004	persistent	direct	moderate	188	0.895	GCA_016026915.1_01185
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1187394	1187996	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	3607	4209	GCA_016026915_1_1_1108	GCA_016026915_1_1_1108	-	2504445	.	cd19930	phosphoacceptor receiver (REC) domain of DesR and similar proteins. This group is composed of Bacillus subtilis DesR, Streptococcus pneumoniae response regulator spr1814, and similar proteins, all containing an N-terminal REC domain and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. DesR is a response regulator that, together with its cognate sensor kinase DesK, comprises a two-component regulatory system that controls membrane fluidity. Phosphorylation of the REC domain of DesR is allosterically coupled to two distinct exposed surfaces of the protein, controlling noncanonical dimerization/tetramerization, cooperative activation, and DesK binding. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	MISLVITEDQLMLRKAMVQLIEMHEEMNVIKDFENGVEALEFIENNEPNVAILDIEIPGLTGLEILSYVRKKQLNTRIIIVTTFKRPGYFEKAVANDVDAYVLKERSIDDLIKTIYKVTKGEKEYSPSLMTSLFTESNPLTHKEQVVLREIGNGLSSKEIASKLYLSNGTVRNYTSTIIDKMNSDHRFEAWKKANEKGWI*	mmseqs_cdd	nonviral_gene	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0005	persistent	direct	high	602	0.998	GCA_016026915.1_01186
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1187993	1189087	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	4206	5300	GCA_016026915_1_1_1109	GCA_016026915_1_1_1109	-	2504445	.	COG4585	Signal transduction histidine kinase  [Signal transduction mechanisms]. 	MESRSWGARIGELSTLIYLIFPILAIFVDKRGNLFTYLIVCTIFIISYVTMILFYKHLSDSILYSLLVIHYLGIFYFVYSVNPMNSLFFFYSAFALPFIFNVRVVSKEFITFLIAMISCLILTYIFNPTFVVPLSAFYLVILIVAVGNFKNRDERIMKAKLEEKNKYINVLIAQQERNRISQDLHDTLGHVFASLTLKSELAVKLIDTNPKEAKNEMQAINQLSTEALNKVRLIIDDLKIQSFEDEISSLEHLLQNANLHFKFNNKSAAKSLNPAKQSILSMIFREAINNVIKHAHATEVIGELKVHEHQIILKIKDNGVGIENEDASNLKSIKERVDYLNGKLIVQSNNGTLIIVEIPRGDLL*	mmseqs_cdd	nonviral_gene	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0006	persistent	direct	high	1094	0.999	GCA_016026915.1_01187
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1189087	1189818	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	5300	6031	GCA_016026915_1_1_1110	GCA_016026915_1_1_1110	-	2504445	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MISTFFKIELKIIFRKKLYLVVSIFLPVVFYLLFTSILDMPEEAKLKFYKEYMYSMTVFSLMNFCLLSFPLDLIEERNQGWYKRLMVTPLSSFQYYLVKISKTMCQFIIAIIIIFSVAHFYKDVHMTVFQWIFSALTLWIGVSLFLTLGLIIAQLNDIQKASSFANLLNITLAILGGLWFPVNTFPDWLQSISKNMPTYNLKLLAIDLAQDKVVNIEAIGYLIVYSIIFMSIALFMNKKGDVS*	mmseqs_cdd	nonviral_gene	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0007	persistent	direct	high	731	0.999	GCA_016026915.1_01188
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1189821	1190690	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	6034	6903	GCA_016026915_1_1_1111	GCA_016026915_1_1_1111	-	2504445	.	COG1131	ABC-type multidrug transport system, ATPase component [Defense mechanisms]. 	MIELRNISKSFKKHKVLEDISIDIKNNRCTALIGKNGAGKSTLIDIIVGNNHYDSGQIADKSNLLNKHKMGILFQKTEFPKYIKVCELLHLYQSFYQTFISFHQFKEITQFSDRQMNQFACNLSGGQQRILDFALALVGKPELLILDEPTSAMDVEMRQHFWNVIDKLKMNNTTILYTSHYIEEVERMADQVMMLDKGKIQLDDSPENIKRNQSYSLIRIPCKYQELINQLKHKYEIELIKNRYEIKTTDVSDVLQLLKQYHVNFNKIEILKKSLLEVMFSNDKSKGGK*	mmseqs_cdd	nonviral_gene	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0008	persistent	direct	high	869	0.999	GCA_016026915.1_01189
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1190868	1192340	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	7081	8553	GCA_016026915_1_1_1112	GCA_016026915_1_1_1112	-	2504445	.	PDB:2ZE9_A	Phospholipase-D	MNFGFLGTILTILLVVGFITNVVLAFVIIFLERDRRTASSTWAWLFVLFVLPVIGFILYLFLGRTVSKKKMEKNNGDELNAFEDLVQDQIDSFDKHNYGYINDQVIKHRDLIRMLLMKQDAFLTENNKIDLFTDGHKLYEKVLEDIYNAQDYIHLEYYTFELDGLGKRILDALETKLKEGLEVKLLYDDVGSKKVRLSKFKHFRALGGEVEAFFPSKVPLINFRMNNRNHRKIIIIDGQIGYVGGFNVGDDYLGLGKLGYWRDTHTRVQGEGIDALQLRFILDWNSQSHRPQFKFDQKYFPKKIGDKGNAAIQIASSGPAFDLHQIEYGYTKMIMSAKKSIYLQSPYFIPDQSYINALKMAANSGVEVNLMIPCKPDHPFVYWATFSNAADLLDSGVNIYTYQNGFIHSKILMIDDEISSIGSANMDFRSFELNFEVNAFIYDEDIAKQLRQAFEKDIEQSKLLTKEVYDKRPLSIKFKEGLAKLISPIL*	common_virus_hmm	common_virus	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0009	persistent	direct	high	1472	0.999	GCA_016026915.1_01190
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1192398	1192595	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	8611	8808	GCA_016026915_1_1_1113	GCA_016026915_1_1_1113	-	2504445	.	.	hypothetical protein	MQQIKFKTLTEETLESLEKSVNSFLKSQEGNGYKLLNITIKQIEERAFPHNDEDFNAILTLVTEA*	.	hypothetical_protein	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0010	persistent	direct	high	197	0.995	GCA_016026915.1_01191
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1192909	1193934	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	9122	10147	GCA_016026915_1_1_1114	GCA_016026915_1_1_1114	+	2504445	.	COG2008	Threonine aldolase [Amino acid transport and metabolism]. 	MISFENDYLEGAHEKVLNRLVETNRIQAAGYGFDDFSAQAADKIRQRIDCPDATIRFLVGGTQTNQVVINSMLDSYEGVISADTGHVAVHEGGAIEFSGHKVLTIPSQEGKITAQDVENYIETFESDFKKEHMVYPGMVYISHPTEYGTLYTKEELQSLSRVCRRHQIPLFMDGARLGYGLMSNQTNVTIEDVAKYCDVFYIGGTKIGALCGEAIVFTKQNEPKNFTTIIKHHGALLAKGRLTGVQFLELFTDDLYFDISRHAIKMAEKVKKGFIDKGYQVYFDSPTNQQFFILSNDKIEELKQKVKFAVWEKYDNQHRVVRFATSWATTEENVNQLLELI*	mmseqs_cdd	nonviral_gene	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0011	persistent	direct	high	1025	0.999	GCA_016026915.1_01192
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1194004	1194687	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	10217	10900	GCA_016026915_1_1_1115	GCA_016026915_1_1_1115	+	2504445	.	pfam07553	Host cell surface-exposed lipoprotein. This is a family of lipoproteins that is involved in superinfection exclusion. Proteins in this family have been shown to act at the stage of DNA release from the phage head into the cell.	MQQERQSWYQKSWFIILTLLFIFPLGLFLMWRYAHWKNWLKLTVSSVYIISLVLTLLFQVSLLNENKTNQIEHASTMKEKSNINNVKTTKNKNMEKSTQTDKQNSVNLKQNTKDQNNNANDEAASPTSEQNAAIAQAKSYANTLPISKKSLYKQLTSEYGEKYPADVAQYAVDHISVDYKMNALRLAKSYVKNINISNQASYDQLVSENGEGFTPEEAQYAINHLDR*	mmseqs_cdd	nonviral_gene	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0012	persistent	direct	high	683	0.999	GCA_016026915.1_01193
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1194938	1195126	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	11151	11339	GCA_016026915_1_1_1116	GCA_016026915_1_1_1116	-	2504445	.	PFAM:PF14265.5	head-scaffolding-protein	MLVTSNAEDTKKNVETFSNLLNKIVQSNVERALRQDSPVSTQSNKMTKDEESDYLVSGRKCL*	phrogs_hmm	hypothetical_protein	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0013	shell	direct	high	188	0.995	GCA_016026915.1_01194
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1195133	1195510	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	11346	11723	GCA_016026915_1_1_1117	GCA_016026915_1_1_1117	-	2504445	.	PDB:6B0X_d	capsid-scaffolding-protein	MQTKKTNMLKLKLQFFAEEPGDNAQTSEGQEKQDTPEKVYSEEEFNQRLNSELQRRLKQKEDEKAEAVKEAQKLAKMNKDQQLQYENEKLTKQLEEYKVRDAKSQMKAEARLMLNKEGIDVTEEP*	hallmark_hmm	common_virus	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0014	shell	direct	high	377	0.997	GCA_016026915.1_01195
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1195687	1195878	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	11900	12091	GCA_016026915_1_1_1118	GCA_016026915_1_1_1118	-	2504445	.	4A54_A	EDC3, MRNA DECAPPING COMPLEX SUBUNIT	MNLQYYLGKIVKLTLTNNKVLVGKVTGFDDKYDNFDGFNSIEIDTGSILYDITENKIKSIVLN*	hhsuite_tools	hypothetical_protein	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0015	shell	direct	high	191	0.995	GCA_016026915.1_01196
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1195884	1197230	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	12097	13443	GCA_016026915_1_1_1119	GCA_016026915_1_1_1119	-	2504445	.	PFAM:PF06152.10	minor-capsid-protein	MPDSLEYWLERAQNVIKVESLADAQAIVEVERIILQMYAEIAKELLAFYAKYATDTGLTIQEVMKKADEFDVYAFRNKAKKYVKRKDFSDEANNALKLYNLSMKVSREKLLKQQLDLIVKDSTLDIQDEIENKLVDAVDREVERQVHILGENVKIDDTEVKAVVNSNFKGVNWSTRLWQDMAVVQKEVERTTSNVLLRGRHPNEYIKDFKKQTNTTTYNTSRLLVTESARVQAESQKLTYLKDLGEDGEYKYVAKIDKKTSKICHSLNSKVFKVKDMIFGVNAPPMHPWCRSTTVPHVGNWRDRFFTERKGKYRVEDKELVKEKLQEKAKKEMLEMIDDGKIKIELNNEKQERHILNTKAYYNKKYNSSILPSYITLDTKEIEKITKKEFINFPVLFDDEGKFRNKQIINYNKIIGKSYVNDEYIETKLGKVHYSKTGFHVVPYIKKE*	hallmark_hmm	common_virus	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0016	shell	direct	high	1346	0.999	GCA_016026915.1_01197
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1197295	1197534	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	13508	13747	GCA_016026915_1_1_1120	GCA_016026915_1_1_1120	-	2504445	.	PDB:5A20_A	Portal-Protein	MKRYKLLLNNINLTGVYSHDYSKIDITFTPNLPKSLLESIEAFNALNGGVSEQTRLKILPIIDNPNEEIKKMEDEQRKT*	hallmark_hmm	common_virus	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0017	shell	direct	high	239	0.996	GCA_016026915.1_01198
GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote	cenote	CDS	1197676	1197921	GCA_016026915.1	CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915.1_CP065656.1	GCA_016026915.1|CP065656.1	GCA_016026915_1_1	GCA_016026915_1_1@C75	13889	14134	GCA_016026915_1_1_1121	GCA_016026915_1_1_1121	+	2504445	.	PDB:1Z19_B	Integrase	MITYFAMNLVSRFPRSTTHNTMMYVTKKLLGKGNELSIHKLKHTHATLLLESNVPMKVIQERLGHKSEAITSDVYSHVTKK*	common_virus_hmm	common_virus	C75	14134	1183788	1197922	GCA_016026915.1|CP065656.1@region_1183789_1197922@tool_cenote_CDS_0018	shell	direct	high	245	0.996	GCA_016026915.1_01199