core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2208347	2209132	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	1	786	GCA_016728205_1_1_2022	GCA_016728205_1_1_2022	+	2665682	.	PDB:1A0P_A	Recombinase-XerD	MLNLTAWRGAMIARNFTVETIKTRLYHVSAAADFLGGEPSAWTRAAVEDYLAAGDWAPATRRSIHASLKAYCRWCPDIDGAGPLAEIPAPRVPRSLPRPASEDAVMAALRAAGPREQLMIELMAYGGLRRGEVARVRGSDVQGQWLRVEGKGGHVRLVPLPPHLARRIAAHGDSWLFPGQINGHLSPRRVTELVGEVLPVGVTPHALRHRFATRVYAQSGDIVALSMLLGHAKLDTTMVYTQVDSVVQAQAAAGAWTLAAS*	common_virus_hmm	common_virus	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0001	cloud	direct	high	785	0.999	GCA_016728205.1_02069
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2209282	2210418	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	936	2072	GCA_016728205_1_1_2023	GCA_016728205_1_1_2023	-	2665682	.	.	hypothetical protein	MVSRLAASTEIKIQSDQWGITYRPGNILTGISITWGRQSLWDAPVKRSCKFTISYEDIQAARDQWFTFLRANVTVTLDGTVVFVGHIDSMEFEEIGDQWWIAYSAVEATGWNNLMSRTFETRANTPALMRASMEIQSGGIRPNIIEPATTEVRFRPPAQPVTLTYEQGWGAVAAPWPLSHPQWSPDYSQCSATTWRLDHAWGANITVFANEVAGKPPRMDAGEMTRTIYWESGGTYGESNNGTPQLSSYWAPGSEGGANSGRKSTNPYAVKSYPLEMIKAASNLAQAQITAPREFTFYDDLLMEIPQRIGQVMPLFYTWEQRRRFKINPDGSGNDPYAATLFDLQPLYVAIGGTLTIRHDQTTHDVTAIYASDEHTGQ*	.	hypothetical_protein	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0002	cloud	direct	high	1136	0.999	GCA_016728205.1_02070
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2210412	2212295	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	2066	3949	GCA_016728205_1_1_2024	GCA_016728205_1_1_2024	-	2665682	.	Uniprot:A0A0M4RRC2_9CAUD	tail-tape-measure-protein-	MAGKTSFSIAILADAKQAKQGFGEAESGLDKLESKAGKASAALGVASAGVIALGKEAFDSASALQQSTGAVESVFSAQAEEVKKLADVAADTVGLSKNQYNELASVLGSQLKNLGTSQDELAGKSDELITLGADLAATFGGTTADAVGALSSLMRGERDPIERYGVSIKAADIEARLAAEGLSDLEGEARTAAETQAMMGILMEQTAAATGAFARESDTAAGSQQSAAAAYENAKAALGEVLLPYVAQAADKLGEMAKWAAEHPALFQVMAGAILGLTGALAGIVGGIRAWKAATDAVKTAQELLNGTMKLNPMMVAVAAIAALVAALIWAYNNVEWFRDGVHATADWIGQKFQEVIAAVKDVGQWFSTLPEKAGAAIETAKQVVGNFVDSVAEKFGQAIEWIRSLGDRAAAIGDFFGNGIRAAIQWIVDFVDKIVTAYFDRVKQNIEIMGNIAATIGDFFGAGIDIARQWIANLTDWVAEKFNIVIGWINDVVDFAAGIGDAFGNTVDRAIGYVRDLIDWIRTAWDWLTSFGNASDQAGAMGYYAAGPADILGIPTGNVGMIYGIPTPSITAASVPRVNGIVRATTTSQANQPAAINITVTGALDPDGVARQIKQLLARYDRRQSW*	hallmark_hmm	common_virus	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0003	cloud	direct	high	1883	0.999	GCA_016728205.1_02071
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2212443	2212700	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	4097	4354	GCA_016728205_1_1_2025	GCA_016728205_1_1_2025	-	2665682	.	.	hypothetical protein	MIISVNYTDGERQEARVTTADRIKYDFERSRRKWPNAAEAPFLALAYWAYAALIRTKQTELDFDDWCETVEDTERLDNSDDSPES*	.	hypothetical_protein	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0004	cloud	direct	high	257	0.996	GCA_016728205.1_02072
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2212690	2213115	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	4344	4769	GCA_016728205_1_1_2026	GCA_016728205_1_1_2026	-	2665682	.	PFAM:PF04883.11	putative-tail-component	MVDGRAEVRIRGGRELRRRLRQAGQDMTELKAANREAAEIVAAAAIARAPTGTGATGRKKRRRLKETVRAQASATSGRVKVGGAANPYAGPIHFGWPARNIQANPFVSEAAQGKEPVWLRLYEAHIEKILSSISGDITHDN*	hallmark_hmm	common_virus	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0005	cloud	direct	high	425	0.998	GCA_016728205.1_02073
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2213115	2213543	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	4769	5197	GCA_016728205_1_1_2027	GCA_016728205_1_1_2027	-	2665682	.	PFAM:PF06199.10	tail-tube-protein	MALNTKVFTLKTASVMIGGTEWAGELSNVVVTTAVQEAETRRMVNGDEVAGESSYSHTVKGKVEQNLTIKGLAGYLMQNKGQVKPCVIKPHTTDGAIISGNVRLDPVDIGGDANTVNTSDLELKFIGDISFTAATKINGQTP*	hallmark_hmm	common_virus	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0006	cloud	direct	high	428	0.998	GCA_016728205.1_02074
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2213560	2213901	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	5214	5555	GCA_016728205_1_1_2028	GCA_016728205_1_1_2028	-	2665682	.	.	hypothetical protein	MTVLADLRQLAQALSAAGVKTAIDPGRVTVPGAWITARSITGGRVTGDRTYSFDLYLISPRVDTVRALGILDTLLEQATGAIGGIITDSDLGTQISLPDQPGLPAFRLTLEPH*	.	hypothetical_protein	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0007	cloud	direct	high	341	0.997	GCA_016728205.1_02075
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2213898	2214209	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	5552	5863	GCA_016728205_1_1_2029	GCA_016728205_1_1_2029	-	2665682	.	PDB:5A21_D	head-to-tail-adaptor	MVSIERLKARLNITDSHDDSEIERVARATESLVSQWLGNDREHLAKEHIQLGIEMLAARLFLRRNSPGGLEQMTELGPVYVSRSDGDIAQLLGLGAYRRAVVA*	hallmark_hmm	common_virus	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0008	cloud	direct	high	311	0.997	GCA_016728205.1_02076
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2214213	2215694	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	5867	7348	GCA_016728205_1_1_2030	GCA_016728205_1_1_2030	-	2665682	.	PDB:8ECO_D	Major-Capsid-Protein	MIFSTRTVLTASHDGQAPAAPDTPRTVSGIIIPFHEEGHTSAGPLTAAPGSIELPADPTTIKLYRDHSTVGGTPVGHALSFEETAEGISATFKIARTPDGDAAFSDVTEKVRDALSVELLEHTVTAGRIESAELIAVALVPTPAFAAARIHTTTASHQQEEKMPTQNTTNQGTINEEKAAAPTTEQPNGTPAAKPSGLTYGDPTSTQPITANAIFESMHRVINGAPADTKITAALQAMTVAKSPFEFAPKWLENLWQGSEYARQYIPHMTQAELTDLKAQGMVWEQKPAVAEYKGHPAEVPSTAPKFKLVEVNATRLAGANTLPIEFVHFGKTGHIAAYFAAMVESYKMLSDQKALTETLAAATTVTAQAQDSLFKKAARLRQAIRKSTRVDPTIYVVNDEDWLNLIDLNEDKIPAFLKQIGADIEQIIPTDEVPAGTVLAWAKPAVTHFELKGSPIRANALDIAHGGTVEGVFGYRALLVNDARGVAKTQVG*	hallmark_hmm	common_virus	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0009	cloud	direct	high	1481	0.999	GCA_016728205.1_02077
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2215848	2216048	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	7502	7702	GCA_016728205_1_1_2031	GCA_016728205_1_1_2031	-	2665682	.	.	hypothetical protein	MWVLIVVGMIAAVLGALAAAMVIARAVAKNGITINGSNASEVPNSRRSAHSTSRSRGPTSRVARNR*	.	hypothetical_protein	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0010	cloud	ambiguous	low	99	0.493	GCA_016728205.1_02078
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2216036	2216164	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	7690	7818	GCA_016728205_1_1_2032	GCA_016728205_1_1_2032	-	2665682	.	.	hypothetical protein	MTALGIAFLILRILTMVAVIVTAALMTWDWLESRKESRACGY*	.	hypothetical_protein	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0011	.	unmatched_CDS	none	0	0	.
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2216240	2216794	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	7894	8448	GCA_016728205_1_1_2033	GCA_016728205_1_1_2033	-	2665682	.	PFAM:PF00182.18	endolysin	MEKVLQYPRDQVGQDTFYNCGPASCQTVIRAATGSLIAESELGRCLRTHRGGTDWIGQFPTVLNHFIPAAHYRHREMPNDPPTAAQRDRLWEDIVGSIDRGHGVVANIVAPPSNYPRAVAPSTIQPIYKGGTVYHYFAVMGYSDQGQRRVWIADSGFYPGGYWLALDQLATLIPPKGYAYSGGA*	phrogs_hmm	hypothetical_protein	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0012	cloud	direct	high	554	0.998	GCA_016728205.1_02079
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2216804	2217862	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	8458	9516	GCA_016728205_1_1_2034	GCA_016728205_1_1_2034	-	2665682	.	PDB:3KDR_A	Portal-Protein	MNDVTNLLHLMGGRINMPVAPADGDTGLQPATIDAAGVSLSAVPAQRENAMQVPAIMRARNLICTTAALCELKAVRLDDSSELETQPSFITRTDRELSPFHRALWTADDLLFYGWSLWQVTRDYDGQVITADRVDYSRWQFQADGTITIDGHPAAAASVILIPGIHEGILEHGGQTIREASALMRGVTRAVETPQPVTELHQTNDRVMSEQEATELKNSWIKARQAEGGGIAVTSAGIEVKHHGAADKHLLIEGRNAVATDIARLCGIPAPMIDASISGTSMSYSNTQSRMAELITFGVAPIISAIAARLSQNDVLPLGKKFRVDVDTAVSGFAAIPESATGLVDTPPAPRI*	hallmark_hmm	common_virus	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0013	cloud	direct	high	1058	0.999	GCA_016728205.1_02080
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2217953	2219296	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	9607	10950	GCA_016728205_1_1_2035	GCA_016728205_1_1_2035	-	2665682	.	PFAM:PF03354.14	Large-Terminase	MQAMGNDPMPWQQWAADVIGEIDPTTGLRRWPIVIISVPRQSGKTALMAAVCLQRALQAPRSYVWSTAQTGQHARRNWIKYTDEFVSSRFPLSKLFKRLKSRGDEHLLIPKLGSDWAPHPPTEESLHGEQGDLNAIDEAWVFDEAEGQALMQAITPTHATRPGAQTILISTRGTSASTWFHRYVERGQSGEPGIALIDYGIGPDDDPTDLNVVARHHPAVGFTQSIDSLAAAWQEMGGDVAGFARAYGNRETANQERFIPLKPWLMAADDTPIPDNARVVFGAAVSLNRDQTAIYACAVVSGTPIIEMVDVRPGTRWAAARIKALCEKHNSQCVVDGIGPGGALAAELERLDVRAHKVKAAELTAGCAGFFDRITRTDSEGQPCPEIKIRPSNALDYAAELATARRIGDAWAWDRRGEAGSIAPLEAATLAMIGALDTRDPVAAIIY*	hallmark_hmm	common_virus	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0014	cloud	direct	high	1343	0.999	GCA_016728205.1_02081
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2219328	2219660	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	10982	11314	GCA_016728205_1_1_2036	GCA_016728205_1_1_2036	-	2665682	.	.	hypothetical protein	MSDTLFDLGTSDPTDYQDQLETAIAQAIKDGWVSEIDEAALSIARANAKALDQAARDRKYYAIAQISGPYLEVLRSLKLTPESRGEDNNDEANEFLAKLGAATVRDTQAD*	.	hypothetical_protein	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0015	cloud	direct	high	332	0.997	GCA_016728205.1_02082
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2220100	2220654	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	11754	12308	GCA_016728205_1_1_2037	GCA_016728205_1_1_2037	-	2665682	.	PFAM:PF02467.15	transcriptional-regulator-WhiB-like	MNDDLDYRTHCSPDSADDWDCLPNKNYRNGFTDYAVYARYLDSEQARARSLCGDCPLLQACARYALAHHDTANVSQVWNMVIVAGIPFAANSRQRAVQQGGYIALAALAEGYPLERAQRLQTRSVDAEVTPWKEFPARIARARARFAHRAAAVREQAATPLTSGGGSPVPARPARAAYAPQGAA*	phrogs_hmm	hypothetical_protein	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0016	cloud	direct	high	554	0.998	GCA_016728205.1_02083
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2221012	2221200	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	12666	12854	GCA_016728205_1_1_2038	GCA_016728205_1_1_2038	+	2665682	.	.	hypothetical protein	MAIEPVKTIEDYGRVLQPLLSRGNPHTRGLEGYNPRRMSGNTCNTCGAAGQLGVGAQTPLQD*	.	hypothetical_protein	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0017	.	unmatched_CDS	none	0	0	.
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2221210	2221719	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	12864	13373	GCA_016728205_1_1_2039	GCA_016728205_1_1_2039	-	2665682	.	.	hypothetical protein	MITDVWRQVLDLTPLFRACDIGMGASHLEITYPGLEISHPFHMLLNLGAQDAIVFRFAEVATPTLDEMRMVVCPIEAIPLAVAHALAILGHPTLPRFESLADLERSLVRIVSLWIDIEPAALWTWYDLDDFLTRVAVECTQDGKHFWTLSTSPAELLSQLELCAWETEP*	.	hypothetical_protein	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0018	cloud	direct	high	509	0.998	GCA_016728205.1_02084
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2221719	2221898	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	13373	13552	GCA_016728205_1_1_2040	GCA_016728205_1_1_2040	-	2665682	.	.	hypothetical protein	MMGLSHTHLIRLTAKGDIPALGKLHGKRGALVFDKAEIEKLAQQKAARLRAQAKELESA*	.	hypothetical_protein	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0019	cloud	direct	high	179	0.994	GCA_016728205.1_02085
GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote	cenote	CDS	2222017	2222340	GCA_016728205.1	CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205.1_CP068157.1	GCA_016728205.1|CP068157.1	GCA_016728205_1_1	GCA_016728205_1_1@C160	13671	13994	GCA_016728205_1_1_2041	GCA_016728205_1_1_2041	+	2665682	.	COG1396	Transcriptional regulator, contains XRE-family HTH domain [Transcription]. 	MGKVAHMTTSINFKGFVPTWDIHDRLAKARRAAGFEQSELAEITGISRRTLSRYETGLSEPKRANLIAISFATGVSLDWLENGETPAGDNPGGGTMVRHQGLEPRTH*	mmseqs_cdd	nonviral_gene	C160	13994	2208347	2222341	GCA_016728205.1|CP068157.1@region_2208348_2222341@tool_cenote_CDS_0020	.	unmatched_CDS	none	0	0	.