core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote	cenote	CDS	91	273	GCA_018373775.1	JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775.1_JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775_1_3	GCA_018373775_1_3	92	274	GCA_018373775_1_3_1	GCA_018373775_1_3_1	+	5459	.	pfam07125	Protein of unknown function (DUF1378). This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	MTFVHTMLLYFCTVVCALYLVSGGYKIIRNYIRKKIDAAAAEKISTGQAGGTKPEGPLIP*	mmseqs_cdd	common_virus	NaN	.	0	5459	GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote	cenote	CDS	311	646	GCA_018373775.1	JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775.1_JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775_1_3	GCA_018373775_1_3	312	647	GCA_018373775_1_3_2	GCA_018373775_1_3_2	+	5459	.	pfam05696	Protein of unknown function (DUF826). This family consists of several enterobacterial and siphoviral sequences of unknown function.	MTELNKLVTADAVKAALRSEEVRGKLKETIRKTFEAQIDADVEAILDELIGPAEVQPGEPTGEDAQADAPSAENGAAQPEPASGAEAQPEPASGAETQPEGTPEPEPATLL*	mmseqs_cdd	common_virus	NaN	.	0	5459	GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote_CDS_0002	cloud	direct	high	335	0.997	GCA_018373775.1_00397
GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote	cenote	CDS	724	939	GCA_018373775.1	JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775.1_JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775_1_3	GCA_018373775_1_3	725	940	GCA_018373775_1_3_3	GCA_018373775_1_3_3	+	5459	.	pfam04971	Bacteriophage P21 holin S. Phage_holin_2_1 is a family of small hydrophobic holin proteins with one or more transmembrane domains. Members of this family fall into the holin superfamily II, and Phage 21 S holin is the prototype for this superfamily. It has two transmembrane segments with both the N- and C-termini on the cytoplasmic side of the inner membrane in E. coli. Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the build up of a holin oligomer which causes the lysis.	MYQMEKITTGVSYTTSAAGMGYWLLQLLDRVSPSQWAAIGVLGSLLFGLLTYLTNLYFKIREDRRKAARGE*	mmseqs_cdd	common_virus	NaN	.	0	5459	GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote_CDS_0003	.	unmatched_CDS	none	0	0	.
GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote	cenote	CDS	944	1579	GCA_018373775.1	JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775.1_JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775_1_3	GCA_018373775_1_3	945	1580	GCA_018373775_1_3_4	GCA_018373775_1_3_4	+	5459	.	pfam07041	Protein of unknown function (DUF1327). This family consists of several hypothetical bacterial proteins of around 115 residues in length which seem to be specific to Escherichia coli. The function of this family is unknown.	MNKKYELVVKGTNNHPDKIVVTVALEIAGQPSLLSLQVSIGLDRTEGAPLEFYEAEAKKQAKQFFMDIAAGLCEGDEPLPEKRPIILEAQDVLITYRGKLPGIITGSLKMPPSILRSEKDDVESRIEKLERYIAELKKSTPTKNEVLAADEMKEAILDRAAHLSCTSRLKEHLQQPEKKRRDEQFAEFYDYCIEVTRRNFVKAFEESKSLQ*	mmseqs_cdd	common_virus	NaN	.	0	5459	GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote_CDS_0004	cloud	direct	high	635	0.998	GCA_018373775.1_00398
GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote	cenote	CDS	1527	1787	GCA_018373775.1	JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775.1_JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775_1_3	GCA_018373775_1_3	1528	1788	GCA_018373775_1_3_5	GCA_018373775_1_3_5	-	5459	.	.	hypothetical protein	MDYPNLPKQTFADLIALRQAVVALINVLPDKEKELVKAILNRTAADFSSFPLTDDLADLPELIAASAIKLTEEIYSPQKPSQNSCE*	.	hypothetical_protein	NaN	.	0	5459	GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote_CDS_0005	cloud	direct	high	260	0.996	GCA_018373775.1_00399
GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote	cenote	CDS	1899	2432	GCA_018373775.1	JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775.1_JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775_1_3	GCA_018373775_1_3	1900	2433	GCA_018373775_1_3_6	GCA_018373775_1_3_6	+	5459	.	CDD:COG3772	lysozyme	MNAKIKYGLSAAVLALIAAGASAPEILDQFLDEKEGNHTTAYRDGTGIWTICRGAILVDGKPVIPGMKLSKEKCDQVNAIERDKALAWVEKNIKVPLTEPQKAGIASFCPYNIGPGKCFPSTFYRRINAGDRKGACEAIRWWIKDGGRDCRIRSNNCYGQVSRRDQESALACWGIDR*	common_virus_hmm	common_virus	NaN	.	0	5459	GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote_CDS_0006	.	unmatched_CDS	none	0	0	.
GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote	cenote	CDS	2622	2717	GCA_018373775.1	JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775.1_JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775_1_3	GCA_018373775_1_3	2623	2718	GCA_018373775_1_3_7	GCA_018373775_1_3_7	+	5459	.	.	hypothetical protein	MIGQLPNWKFLLVWSIPFLWVVAQLITAIKG*	.	hypothetical_protein	NaN	.	0	5459	GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote_CDS_0007	.	unmatched_CDS	none	0	0	.
GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote	cenote	CDS	2720	2851	GCA_018373775.1	JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775.1_JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775_1_3	GCA_018373775_1_3	2721	2852	GCA_018373775_1_3_8	GCA_018373775_1_3_8	+	5459	.	.	hypothetical protein	MSRKLIMLGDILWGIACISFSATLAALLLSMAWMMLSSSGLVG*	.	hypothetical_protein	NaN	.	0	5459	GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote_CDS_0008	.	unmatched_CDS	none	0	0	.
GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote	cenote	CDS	2972	3439	GCA_018373775.1	JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775.1_JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775_1_3	GCA_018373775_1_3	2973	3440	GCA_018373775_1_3_9	GCA_018373775_1_3_9	+	5459	.	pfam03245	Bacteriophage Rz lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. This family Rz and the Rz1 protein (pfam06085) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.	MNRVLYVLIIVLLVACGALWLATDHYRDNAITYKVQRDKKVRELKLADATITDMQQRQRDVAALDAKYTKELADARAENENLRADVAAGRRSLRVNATCVSATDKTTGSARVGNAARPRLADAAQRHYFTLRERLMTMQKQLEGAQEYIRGQCMK*	mmseqs_cdd	common_virus	NaN	.	0	5459	GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote_CDS_0009	cloud	direct	high	467	0.998	GCA_018373775.1_00400
GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote	cenote	CDS	3463	3687	GCA_018373775.1	JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775.1_JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775_1_3	GCA_018373775_1_3	3464	3688	GCA_018373775_1_3_10	GCA_018373775_1_3_10	+	5459	.	.	hypothetical protein	MKKLLVTVKPFEGTIPFRILQRGRVLSEGSFSGKCTKLFSRTYEVDATNEALTVECAMNTDKCRMLSAELQPVC*	.	hypothetical_protein	NaN	.	0	5459	GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote_CDS_0010	cloud	direct	high	224	0.996	GCA_018373775.1_00401
GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote	cenote	CDS	4409	4576	GCA_018373775.1	JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775.1_JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775_1_3	GCA_018373775_1_3	4410	4577	GCA_018373775_1_3_11	GCA_018373775_1_3_11	+	5459	.	.	hypothetical protein	MKFQLARIYKGELFAGFGIAVNGELLDGQLSVRIDTEAITPPSATVVFSLTREKN*	.	hypothetical_protein	NaN	.	0	5459	GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote_CDS_0011	cloud	direct	high	167	0.994	GCA_018373775.1_00402
GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote	cenote	CDS	5258	5458	GCA_018373775.1	JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775.1_JAHAGL010000016.1	GCA_018373775.1|JAHAGL010000016.1	GCA_018373775_1_3	GCA_018373775_1_3	5259	5459	GCA_018373775_1_3_12	GCA_018373775_1_3_12	+	5459	.	CDD:pfam07471	DNA-packaging-protein	MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIKWYAERDAEIENEKLRREVE	hallmark_hmm	common_virus	NaN	.	0	5459	GCA_018373775.1|JAHAGL010000016.1@region_1_5459@tool_cenote_CDS_0012	.	unmatched_CDS	none	0	0	.