core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_018376035.1|JAHACA010000085.1@region_1_2875@tool_cenote	cenote	CDS	2	145	GCA_018376035.1	JAHACA010000085.1	GCA_018376035.1|JAHACA010000085.1	GCA_018376035.1_JAHACA010000085.1	GCA_018376035.1|JAHACA010000085.1	GCA_018376035_1_26	GCA_018376035_1_26	3	146	GCA_018376035_1_26_1	GCA_018376035_1_26_1	+	2875	.	PFAM:PF05657.10	tail-completion-protein	VHGQLEGIPVQYVERGGIHQDKNLLTNRRIQYRLTRDFIIHYVEDSS*	hallmark_hmm	common_virus	NaN	.	0	2875	GCA_018376035.1|JAHACA010000085.1@region_1_2875@tool_cenote_CDS_0001	cloud	ambiguous	low	3	0.021	GCA_018376035.1_00215
GCA_018376035.1|JAHACA010000085.1@region_1_2875@tool_cenote	cenote	CDS	142	543	GCA_018376035.1	JAHACA010000085.1	GCA_018376035.1|JAHACA010000085.1	GCA_018376035.1_JAHACA010000085.1	GCA_018376035.1|JAHACA010000085.1	GCA_018376035_1_26	GCA_018376035_1_26	143	544	GCA_018376035_1_26_2	GCA_018376035_1_26_2	+	2875	.	PFAM:PF04883.11	tail-component	MIRMEVKGLDELERQLMALGEKVATKVLRDAGREALKVVEEDMKQHAGFDETSAGPHMRDSIKIRSSTRKGKGNAVVTLRVGPSKQHHMKALAQEFGTVKQVADPFIRPALDYNLQTVLRVLTVEIRNGIENR*	hallmark_hmm	common_virus	NaN	.	0	2875	GCA_018376035.1|JAHACA010000085.1@region_1_2875@tool_cenote_CDS_0002	cloud	direct	high	401	0.998	GCA_018376035.1_00215
GCA_018376035.1|JAHACA010000085.1@region_1_2875@tool_cenote	cenote	CDS	575	1036	GCA_018376035.1	JAHACA010000085.1	GCA_018376035.1|JAHACA010000085.1	GCA_018376035.1_JAHACA010000085.1	GCA_018376035.1|JAHACA010000085.1	GCA_018376035_1_26	GCA_018376035_1_26	576	1037	GCA_018376035_1_26_3	GCA_018376035_1_26_3	+	2875	.	PFAM:PF16463.4	major-tail-protein	MADKTSPEYAMLPAGTIVKYGEPGAATSALKPLINCKALGAMGQTGGFVDCTTLLDKQKQSISDLPDGPEKSLGFIDDPGNTDFAALLNAAEARKTIQLYVELPNKRTATMLLALSGWQMNEIAAPANEVIQITVQGKQNKITWGTVAVSGGA*	hallmark_hmm	common_virus	NaN	.	0	2875	GCA_018376035.1|JAHACA010000085.1@region_1_2875@tool_cenote_CDS_0003	cloud	direct	high	461	0.998	GCA_018376035.1_00216
GCA_018376035.1|JAHACA010000085.1@region_1_2875@tool_cenote	cenote	CDS	1093	1458	GCA_018376035.1	JAHACA010000085.1	GCA_018376035.1|JAHACA010000085.1	GCA_018376035.1_JAHACA010000085.1	GCA_018376035.1|JAHACA010000085.1	GCA_018376035_1_26	GCA_018376035_1_26	1094	1459	GCA_018376035_1_26_4	GCA_018376035_1_26_4	+	2875	.	pfam16462	Phage tail assembly chaperone protein, TAC. This is a family of Siphoviridae phage tail assembly chaperone proteins.	MKDKDYLSTLKSALLKSEPTVIKTELFGATVFIRRLTGDYLISYEEKMAETAKAGAAREASEQAIQLVIDALVQPDGTAIPDEFKPTAAELLKAHENPELLAAVEKVKQHAIGKLEEAEKN*	mmseqs_cdd	nonviral_gene	NaN	.	0	2875	GCA_018376035.1|JAHACA010000085.1@region_1_2875@tool_cenote_CDS_0004	cloud	direct	high	365	0.997	GCA_018376035.1_00217
GCA_018376035.1|JAHACA010000085.1@region_1_2875@tool_cenote	cenote	CDS	1691	2872	GCA_018376035.1	JAHACA010000085.1	GCA_018376035.1|JAHACA010000085.1	GCA_018376035.1_JAHACA010000085.1	GCA_018376035.1|JAHACA010000085.1	GCA_018376035_1_26	GCA_018376035_1_26	1692	2873	GCA_018376035_1_26_5	GCA_018376035_1_26_5	+	2875	.	PFAM:PF10145.8	minor-tail-protein	MADVASLAVGLHLNAASFKSQLLGAYGDAENQSRRFNRNAQADAKKTEDAYKKVGLSISGMASRLAGLAGAGLSIGTIVTTSRQYGQALSDLQAITGATAAEMKALDLAAQEMGRTTEYSASQAAEALKLMASAKPELLKTSDGLQKATNSALILAQAAGTTLPDATRTLALSLNQYGASAQEADRYINVLAAGAKYGSSEIVDTAAAIKNGGVAAAQAGVGFEQLNAAIQVLAKREIKGGEAGTALRNVILNLEKGTDKSLKPSVVGLSQALTTLSGKNLSTAQAVKLFGVENLNAASILVQNRSKLDELTASLTGTKTAHEQASIRVNNLNGDLMGLTSAFEGMITKVGKSSDGALRGGINGATEAINGLADNFSVVSDIALYTLIPILSSK	hallmark_hmm	common_virus	NaN	.	0	2875	GCA_018376035.1|JAHACA010000085.1@region_1_2875@tool_cenote_CDS_0005	cloud	ambiguous	low	468	0.396	GCA_018376035.1_00218
GCA_018376035.1|JAHACA010000089.1@region_1_2013@tool_cenote	cenote	CDS	2	334	GCA_018376035.1	JAHACA010000089.1	GCA_018376035.1|JAHACA010000089.1	GCA_018376035.1_JAHACA010000089.1	GCA_018376035.1|JAHACA010000089.1	GCA_018376035_1_32	GCA_018376035_1_32	3	335	GCA_018376035_1_32_1	GCA_018376035_1_32_1	+	2013	.	PFAM:PF05939.12	minor-tail-protein	IEIFTWSPRVNPQQTVNFRVRKAQFGDGYAQVSGDGINTRSQDWELSFVGTEDYIRPIKQFFDRHAGTRAFQWTPPLEEVGLYRCEQYKPVPLGGGNYSLSATFIQAFKP*	hallmark_hmm	common_virus	NaN	.	0	2013	GCA_018376035.1|JAHACA010000089.1@region_1_2013@tool_cenote_CDS_0001	cloud	ambiguous	low	3	0.009	GCA_018376035.1_00399
GCA_018376035.1|JAHACA010000089.1@region_1_2013@tool_cenote	cenote	CDS	331	1086	GCA_018376035.1	JAHACA010000089.1	GCA_018376035.1|JAHACA010000089.1	GCA_018376035.1_JAHACA010000089.1	GCA_018376035.1|JAHACA010000089.1	GCA_018376035_1_32	GCA_018376035_1_32	332	1087	GCA_018376035_1_32_2	GCA_018376035_1_32_2	+	2013	.	PFAM:PF05100.11	minor-tail-protein-	MSLNANYQKLEPGDEVRLLEIDGQAFGLDEVLYFHGYNVPHTAAEILAADGDLDKLPAKSIWWQGREYKAWPCVIEGIESSTTGSDAQPTLRVGNIDGKISALCLHYDDLALARVVIHDTQKQYLDAKNFPDGNASADPTQEKRRLFFIDVKHYEDDEKVEFTLSSPFALQGMMIPTRQLHAICTWCIRNQYRSGNGCDYAGTRYFDRNNQPVDVPSQDVCNGTLTACKLRHGENSELPFGGFPGTSLIRS*	hallmark_hmm	common_virus	NaN	.	0	2013	GCA_018376035.1|JAHACA010000089.1@region_1_2013@tool_cenote_CDS_0002	cloud	direct	high	755	0.999	GCA_018376035.1_00399
GCA_018376035.1|JAHACA010000089.1@region_1_2013@tool_cenote	cenote	CDS	1088	1798	GCA_018376035.1	JAHACA010000089.1	GCA_018376035.1|JAHACA010000089.1	GCA_018376035.1_JAHACA010000089.1	GCA_018376035.1|JAHACA010000089.1	GCA_018376035_1_32	GCA_018376035_1_32	1089	1799	GCA_018376035_1_32_3	GCA_018376035_1_32_3	+	2013	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MRQKTIKAIQEHAAAEYPREACGLVAQRGRAERYFPCRNLATESKYNFVLAPEDYAEVEEWGAITGIVHSHPDATTQPSELDKAQCDATLLPWHIISWPEGDLRTIHPRGELPLLERPFVLGHYDCWGLVMSYFRQTHGIELHDYRVDYPWWEKEYPDNFYQDCWYECGFREFDGPPQPGDMVIMQVQADKWNHAGILLEGNLLLHHLYGHLSKRVPYGGYWMERTMKIVRYKTLT*	mmseqs_cdd	common_virus	NaN	.	0	2013	GCA_018376035.1|JAHACA010000089.1@region_1_2013@tool_cenote_CDS_0003	cloud	direct	high	710	0.999	GCA_018376035.1_00400
GCA_018376035.1|JAHACA010000099.1@region_1_1419@tool_cenote	cenote	CDS	1	126	GCA_018376035.1	JAHACA010000099.1	GCA_018376035.1|JAHACA010000099.1	GCA_018376035.1_JAHACA010000099.1	GCA_018376035.1|JAHACA010000099.1	GCA_018376035_1_47	GCA_018376035_1_47	2	127	GCA_018376035_1_47_1	GCA_018376035_1_47_1	+	1419	.	.	hypothetical protein	DAEGNPVSAFSRNQSLIRVVLEHDIGFRHPEGLVLGPGVLF*	.	hypothetical_protein	NaN	.	0	1419	GCA_018376035.1|JAHACA010000099.1@region_1_1419@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_018376035.1|JAHACA010000099.1@region_1_1419@tool_cenote	cenote	CDS	185	580	GCA_018376035.1	JAHACA010000099.1	GCA_018376035.1|JAHACA010000099.1	GCA_018376035.1_JAHACA010000099.1	GCA_018376035.1|JAHACA010000099.1	GCA_018376035_1_47	GCA_018376035_1_47	186	581	GCA_018376035_1_47_2	GCA_018376035_1_47_2	+	1419	.	.	hypothetical protein	MAAKNKAVEPEETVVQDNHATETAQDNHATETAQDNHATETAQDNHATETAQDNRATETAQDNRATVVAQAERKSVVFLGPHSRYSRGDIAWFEGSHAEELVKRRIAVWPKDAERALKPKPGDSDFDTDIG*	.	hypothetical_protein	NaN	.	0	1419	GCA_018376035.1|JAHACA010000099.1@region_1_1419@tool_cenote_CDS_0002	cloud	direct	high	395	0.997	GCA_018376035.1_00660
GCA_018376035.1|JAHACA010000099.1@region_1_1419@tool_cenote	cenote	CDS	561	878	GCA_018376035.1	JAHACA010000099.1	GCA_018376035.1|JAHACA010000099.1	GCA_018376035.1_JAHACA010000099.1	GCA_018376035.1|JAHACA010000099.1	GCA_018376035_1_47	GCA_018376035_1_47	562	879	GCA_018376035_1_47_3	GCA_018376035_1_47_3	+	1419	.	PFAM:3JVO_G	Head-Tail-Connector-protein	MILTLDDVKTQLRLELDFTEHDAMLTQMVNAAQRSIERDYYCKLVTSDEELQALPETVRGFIADEDIRLAIQFLVSDAYLNGHTGQWLETAAVRHLLFPLQEHTL*	hallmark_hmm	common_virus	NaN	.	0	1419	GCA_018376035.1|JAHACA010000099.1@region_1_1419@tool_cenote_CDS_0003	cloud	direct	moderate	252	0.792	GCA_018376035.1_00661
GCA_018376035.1|JAHACA010000099.1@region_1_1419@tool_cenote	cenote	CDS	875	1213	GCA_018376035.1	JAHACA010000099.1	GCA_018376035.1|JAHACA010000099.1	GCA_018376035.1_JAHACA010000099.1	GCA_018376035.1|JAHACA010000099.1	GCA_018376035_1_47	GCA_018376035_1_47	876	1214	GCA_018376035_1_47_4	GCA_018376035_1_47_4	+	1419	.	PDB:2KZ4_A	Head-tail-adaptor	MSLKPGDMNCRIAISYVQSGRGPLGEPLPEKQVESGKAWAKRELVSGRKVRTLDQQQVVETCLFTVYPGVLVDIDWKITTKNLVYTVRNIDRKTDRIIITGEADGRHDRAGD*	hallmark_hmm	common_virus	NaN	.	0	1419	GCA_018376035.1|JAHACA010000099.1@region_1_1419@tool_cenote_CDS_0004	.	unmatched_CDS	none	0	0	.
GCA_018376035.1|JAHACA010000099.1@region_1_1419@tool_cenote	cenote	CDS	1194	1418	GCA_018376035.1	JAHACA010000099.1	GCA_018376035.1|JAHACA010000099.1	GCA_018376035.1_JAHACA010000099.1	GCA_018376035.1|JAHACA010000099.1	GCA_018376035_1_47	GCA_018376035_1_47	1195	1419	GCA_018376035_1_47_5	GCA_018376035_1_47_5	+	1419	.	PFAM:PF05657.10	tail-completion-protein	MIELAIKGALERITGMNAYPLLLPDTVQEGATFQRISDPEMVSGMLRTGIVSARIQVNLYRLDDYTSLLQLDKKI	hallmark_hmm	common_virus	NaN	.	0	1419	GCA_018376035.1|JAHACA010000099.1@region_1_1419@tool_cenote_CDS_0005	.	unmatched_CDS	none	0	0	.
GCA_018376035.1|JAHACA010000106.1@region_1_1290@tool_cenote	cenote	CDS	1	386	GCA_018376035.1	JAHACA010000106.1	GCA_018376035.1|JAHACA010000106.1	GCA_018376035.1_JAHACA010000106.1	GCA_018376035.1|JAHACA010000106.1	GCA_018376035_1_58	GCA_018376035_1_58	1	387	GCA_018376035_1_58_1	GCA_018376035_1_58_1	+	1290	.	PFAM:PF06805.11	tail-assembly-protein-I	YPVNDETIKIVPVVIGSKKAGVLQTILGAVIIAAAVMLGPAGAGALAAGTAWNVGLAGGAMMLGGVVQMLSPQPAGLARKESADNKASYAFGGVTNTASQGYPVPLLYGKRRIGGAIISAGIYVEDQQ*	hallmark_hmm	common_virus	NaN	.	0	1290	GCA_018376035.1|JAHACA010000106.1@region_1_1290@tool_cenote_CDS_0001	cloud	direct	moderate	320	0.829	GCA_018376035.1_00836
GCA_018376035.1|JAHACA010000106.1@region_1_1290@tool_cenote	cenote	CDS	449	1288	GCA_018376035.1	JAHACA010000106.1	GCA_018376035.1|JAHACA010000106.1	GCA_018376035.1_JAHACA010000106.1	GCA_018376035.1|JAHACA010000106.1	GCA_018376035_1_58	GCA_018376035_1_58	450	1289	GCA_018376035_1_58_2	GCA_018376035_1_58_2	+	1290	.	PFAM:PF13550.5	tail-protein	MANNIIKGRKGGGSKQRTPTEQPDDLQSVAKAKILLALGEGEFAGGLTGKDIYLDGTPLENADGSQNFSGVSWEFRPGTQAQTYIQGIPGTENEISVGTEVSSKTAWTHTFTNTQLSAVRVRLKWPSLMKQEDDGDVVGNTVKYAIDLQTDGGAWQTVLETAVTGKTTSGYERSHRIDLPQAGSTWTLRLRKISPDANSVKVGDVMTLQSYTEVIDAKLRYPNTALLYIEFDSSQFNGSIPQISCEPRGRVIRVPDNYNPETREYTGVWTGGFKWAWTDI	hallmark_hmm	common_virus	NaN	.	0	1290	GCA_018376035.1|JAHACA010000106.1@region_1_1290@tool_cenote_CDS_0002	.	unmatched_CDS	none	0	0	.
GCA_018376035.1|JAHACA010000121.1@region_1_1001@tool_cenote	cenote	CDS	1	999	GCA_018376035.1	JAHACA010000121.1	GCA_018376035.1|JAHACA010000121.1	GCA_018376035.1_JAHACA010000121.1	GCA_018376035.1|JAHACA010000121.1	GCA_018376035_1_85	GCA_018376035_1_85	2	1000	GCA_018376035_1_85_1	GCA_018376035_1_85_1	-	1001	.	PDB:3C9I_E	Tail-needle-protein	QLETGTVMTDWSPSPDDAASGITANTSAINSLTSRVTNAEGQLTAQSQSITNLQNSLNTTNNNVAQKASAQSVSDLTSRVTSAEGKITSQGQAITKLQGDLSSTTDKVNTKADQTALNALTGRVEKTEAGLTAANSNIVSLTAAVNAGNAAGDDYIPNPSFDPAYDRMGYDVVETTADGVPADCPFRYAVRLAGRDHVPKINNIAVTPGDVYEMSALVACGTGSADFNFYIGRATTATGGIGARASGGNTRTTTAWKRATWRFTVPADTNFLRPFLQVNQSSPFGTVWYAADWHMRNVTAANSAQKTADATAKAVDSLTTTVSQQGDTLSSIG	hallmark_hmm	common_virus	NaN	.	0	1001	GCA_018376035.1|JAHACA010000121.1@region_1_1001@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.