core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote	cenote	CDS	54943	55599	GCA_018378535.1	JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535.1_JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535_1_7	GCA_018378535_1_7@C3	1	657	GCA_018378535_1_7_41	GCA_018378535_1_7_41	-	206781	.	.	hypothetical protein	MDNQNPTSASGGAHGGFAPASNTSAPYGASQAQPGEPGTVAAPSFQPAYGAPSGQPGAPAGVAVAPAAYPDRDDTYRRIPAEYTVPEEHRRPYGDATGDFRGPGYFYSVGAFCSGLGALVLAIYAWMVVGLRSLEMSDTSSRSYRSSSLAYDSTSVVGLFLTGLIPAGIAIWLAIYSAQVNSGHATKYTSKMNTFNIFAYILAGLSILAMLGVLFAAL*	.	hypothetical_protein	C3	10474	54943	65417	GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote_CDS_0001	shell	direct	high	656	0.998	GCA_018378535.1_00290
GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote	cenote	CDS	55810	56121	GCA_018378535.1	JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535.1_JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535_1_7	GCA_018378535_1_7@C3	868	1179	GCA_018378535_1_7_42	GCA_018378535_1_7_42	-	206781	.	PFAM:PF06074.12	Portal	MVAVLKLLPHLAVYVSWFGLKSPAPSAPQNTRSLANTEFFASPTSSGKTVTERSAMQMTAVYTCVRILAEAVASLPLHLYQERAGTTGGKERATAHPLYRVLR*	hallmark_hmm	common_virus	C3	10474	54943	65417	GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote_CDS_0002	cloud	ambiguous	low	147	0.471	GCA_018378535.1_00291
GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote	cenote	CDS	56158	56361	GCA_018378535.1	JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535.1_JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535_1_7	GCA_018378535_1_7@C3	1216	1419	GCA_018378535_1_7_43	GCA_018378535_1_7_43	-	206781	.	.	hypothetical protein	MRAKNIFTLGFLLTIVPMFRVVISIARDWEFFNPVSILGAILGGLLVTFVARRTLESDSKFPKGPSK*	.	hypothetical_protein	C3	10474	54943	65417	GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote_CDS_0003	.	unmatched_CDS	none	0	0	.
GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote	cenote	CDS	56637	56816	GCA_018378535.1	JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535.1_JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535_1_7	GCA_018378535_1_7@C3	1695	1874	GCA_018378535_1_7_44	GCA_018378535_1_7_44	-	206781	.	PFAM:PF03354.15	Large-Terminase	MDNIFIRTDPAGNIKPDKEKSIEKIDGVAAIIMGLDRAMRCGSGPATESVYDRRSIFFM*	hallmark_hmm	common_virus	C3	10474	54943	65417	GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote_CDS_0004	shell	direct	high	179	0.994	GCA_018378535.1_00292
GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote	cenote	CDS	57111	58064	GCA_018378535.1	JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535.1_JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535_1_7	GCA_018378535_1_7@C3	2169	3122	GCA_018378535_1_7_45	GCA_018378535_1_7_45	-	206781	.	.	hypothetical protein	MKRLDSLFAIEYGNKLDMNKMTASTPERGVAFVGRIGGLNGRSGVSGFVEPIPDITPYPAGLLTVALGGSLLSTYVQQRPFYTAQNVAVLTPLSDMTTVERLYYAMCIRANAFRYSTFGREANRTLPTIEVPGQVPSWATAMEIPSHEGLAASVGTPRDLSDLSNWADFMLDSLFEIQKGKRVTKADRAPGTTRFIGASDKNNGITDYCNLVPNFDAGTLTVPYNGSVGFAFYQDQPYFACDDIQVLVPRTHMNKWVLLFIATMVRYEKDRFTYGYKWNLARMRQTTIKLPATPAGNPDWEFMEQYMKGLPFSAAIS*	.	hypothetical_protein	C3	10474	54943	65417	GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote_CDS_0005	cloud	direct	high	953	0.999	GCA_018378535.1_00293
GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote	cenote	CDS	58061	59923	GCA_018378535.1	JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535.1_JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535_1_7	GCA_018378535_1_7@C3	3119	4981	GCA_018378535_1_7_46	GCA_018378535_1_7_46	-	206781	.	COG0286	Type I restriction-modification system, DNA methylase subunit [Defense mechanisms]. 	MANERITEDLVEEQLRALGFYENEDEIVVEKQQSAIASIRKALSKASKQGKGGAGYPEYIITAPETPDMVIIVECKAEVKRHSSPQRNKPRDFAVDGVLHYARFLSNSYTVICIAVSGTPQSNEWSFFVVPKGEKEPRVLTSPSGAEITSMVSMNDLIQAASFDHAVQAQRTADLIAFSQEMHAFMRDEAELEEKEKPLAVAGTLIALNDSVFRETYSAYSAKELPDFWMKSIKKVIKNAELPNAKITNMTQPFSGIQVHPELSKATKSYPKGLLNEIVTMLAEKVLPFITVYHDFDVVGIFYGEFLKYTGGDGKGLGIVLTPKHVTELFCLLANVNKDSIVLDTCAGTGGFLISAMNQMMRSATAKAEIEAIKRDRLIGVEQNPSMYALAASNMILRGDGKANLYQGSCFDTAISDGVRKHKSTVGLINPPYSKSKEDLHELRFVEHMLDCLQPGAIGIAIVPISCATAPSDHKRNLLKKHTLEAVMSMPIELFYPVGVVTCIMVFTAGRPHQQSNRKTWFGYWREDGFVKVKNLGRVDRNKTWPDIQKRWVESFRNREVIPGESVMQKVGADDEWVAEAYMETDYSKIGEDDFRKVLLDYALFTLRGESFADEVSGNK*	mmseqs_cdd	nonviral_gene	C3	10474	54943	65417	GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote_CDS_0006	cloud	direct	high	1862	0.999	GCA_018378535.1_00294
GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote	cenote	CDS	60945	61679	GCA_018378535.1	JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535.1_JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535_1_7	GCA_018378535_1_7@C3	6003	6737	GCA_018378535_1_7_47	GCA_018378535_1_7_47	-	206781	.	PF04505.12	Interferon-induced transmembrane protein	MSENNYGNPQGNGQNPYAAQQPASSQQNDAYGQGSYGQSSYGQDSAAQSSYGQNSYGQSSYGQGSYGQEGQNQFGQDSSAQQPSQYGQGYPQQGQPGEFDNYQYQQNSYQQPGQDLYNYGQQGNYPYQASKKTPALAITSMILGIVGILTGFFAIGLLLGIVAVVLGIISLKQTKAAGAGQGFAITGIITGALAFIFGLIMVFVYIFAFQTVQKCAEVGTNDGHGHAVCQVGDNPDDLMTVPAR*	hhsuite_tools	hypothetical_protein	C3	10474	54943	65417	GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote_CDS_0007	shell	direct	high	734	0.999	GCA_018378535.1_00296
GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote	cenote	CDS	61750	61896	GCA_018378535.1	JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535.1_JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535_1_7	GCA_018378535_1_7@C3	6808	6954	GCA_018378535_1_7_48	GCA_018378535_1_7_48	-	206781	.	.	hypothetical protein	MRTRLLSSVGGMHASSGAYSWVGGVAAFLGEKMTWCMAKERLIYIIIG*	.	hypothetical_protein	C3	10474	54943	65417	GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote_CDS_0008	.	unmatched_CDS	none	0	0	.
GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote	cenote	CDS	61896	62360	GCA_018378535.1	JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535.1_JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535_1_7	GCA_018378535_1_7@C3	6954	7418	GCA_018378535_1_7_49	GCA_018378535_1_7_49	-	206781	.	PF13828.6	Domain of unknown function (DUF4190)	MSESSNVPPLPGGSTSPVSQDRAERSSQPGVGPKPGSGLAIASLVCGILGTLTGIFIYSGVSLGLAGIVLGIVALVKVKNGTASGKGLAIGGIVTGVLSFVVAAVTISVLVLNAMMGQECINNGHETADGGYVCTLGGHEQTLSPSEYKNLSRF*	hhsuite_tools	hypothetical_protein	C3	10474	54943	65417	GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote_CDS_0009	shell	direct	high	464	0.998	GCA_018378535.1_00297
GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote	cenote	CDS	62508	63002	GCA_018378535.1	JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535.1_JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535_1_7	GCA_018378535_1_7@C3	7566	8060	GCA_018378535_1_7_50	GCA_018378535_1_7_50	-	206781	.	COG0691	tmRNA-binding protein [Posttranslational modification, protein turnover, chaperones]. 	MAQKKKKDAKKDPNNAIIAQNKKARHNYNIVDTYEAGIVLLGTEVKSLRDGGASIVDGFCQVTDNELWLEGIHIAEYGYGTWTNHAARRRRKLLLHRSEINKLAQKLKETGYTVVPLKLYFSNGRAKVEIALATGKREYDKRQALRERQDDLEARRAMRYRNLG*	mmseqs_cdd	nonviral_gene	C3	10474	54943	65417	GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote_CDS_0010	persistent	direct	high	494	0.998	GCA_018378535.1_00298
GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote	cenote	CDS	63022	64149	GCA_018378535.1	JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535.1_JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535_1_7	GCA_018378535_1_7@C3	8080	9207	GCA_018378535_1_7_51	GCA_018378535_1_7_51	-	206781	.	TIGR00020	"peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called ""RF-1"" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc. [Protein synthesis, Translation factors]"	MASFDFSAEIKELRAIFDSIAAVSDIEGIERAIEDLSAQAAAPDLWDDVENAQKVTSALSYKQSELNRLRSLSSRIDDVEVMVELAEAEDEETAAELLADAERECGEIRAKLEELEVLVLLSGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAEKNGYPTKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVIPLIEQTDAIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVVSMQNEKSQLQNRAAALRVLQSRLLLLRKEQEDAKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRTGYEEGNTSNVLDGGLNAFIDAGIRWRASGRAAEES*	mmseqs_cdd	nonviral_gene	C3	10474	54943	65417	GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote_CDS_0011	persistent	direct	high	1127	0.999	GCA_018378535.1_00299
GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote	cenote	CDS	64396	64932	GCA_018378535.1	JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535.1_JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535_1_7	GCA_018378535_1_7@C3	9454	9990	GCA_018378535_1_7_52	GCA_018378535_1_7_52	-	206781	.	.	hypothetical protein	MRRVGGLVMLIPNGSPAHLFAAVRERYACARARAQSWALASNPEEGSIAPLIVGMLALLLLIGSVTVAITGAYLQTQHLQDMADAQANSITRTIRTPEEASGSAAWEYANAYLAEVQPGQDFQALRLENVSVDSDQSVHVYLSARIRPPLLSILVPDGIEVTAHGSSRLKTSQGPSTD*	.	hypothetical_protein	C3	10474	54943	65417	GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote_CDS_0012	persistent	direct	high	536	0.998	GCA_018378535.1_00300
GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote	cenote	CDS	64895	65416	GCA_018378535.1	JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535.1_JAGZXI010000003.1	GCA_018378535.1|JAGZXI010000003.1	GCA_018378535_1_7	GCA_018378535_1_7@C3	9953	10474	GCA_018378535_1_7_53	GCA_018378535_1_7_53	-	206781	.	.	hypothetical protein	MRFMRSIIPVISGFSLRQRVKACLKNRSDRPLSDRHGSEEGSAIVEFLGLGITLLIPVLYGILTIFSLQSSVMAAHAASAQVVLYVQEQPQDSSVGPDLAKRLAAHAAADYGVEPSDVSVSLSCSSGECVSGTKAYATVTVQARLPLLPSFMGGGVIPVSSHATSWGSGHADS*	.	hypothetical_protein	C3	10474	54943	65417	GCA_018378535.1|JAGZXI010000003.1@region_54944_65417@tool_cenote_CDS_0013	persistent	direct	high	521	0.998	GCA_018378535.1_00301