core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	893825	894802	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	1	978	GCA_018456105_1_1_792	GCA_018456105_1_1_792	+	2270862	.	TIGR01232	tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation. [Energy metabolism, Biosynthesis and degradation of polysaccharides]	MTKSQQKLASIEQLSNQDGIISALAFDQRGALKRMMAEHQTEPPTVEQIEQLKVLVSEELTQYASSILLDPEYGLPASDARNKECGLLLAYEKTGYDVNAKGRLPDCLVEWSAKRLKEQGANAVKFLLYYDVDDSEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNKSAEFAKVKPRKVNEAMKLFSEERFNVDVLKVEVPVNMNFVEGFTEGEVVYTKEEAAQHFRDQDAATHLPYIYLSAGVSAELFQETLTFAHDAGAHFNGVLCGRATWSGAVKVYIEQGEQAAREWLRTTGYKNIDDLNKVLKTTATSWKAK*	mmseqs_cdd	nonviral_gene	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0001	persistent	direct	high	977	0.999	GCA_018456105.1_00868
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	894822	895136	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	998	1312	GCA_018456105_1_1_793	GCA_018456105_1_1_793	+	2270862	.	TIGR00823	phosphotransferase system enzyme II, lactose-specific, factor III. The PTS Lactose-N,N?-Diacetylchitobiose-b-glucoside (Lac) Family (TC 4.A.3)Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as the E. coli N,N?-diacetylchitobiose (Chb)permease which can transport aromatic b-glucosides and cellobiose as well as the chitin disaccharide, Chb, but only Chb induces expression of the chboperon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]	MNREEVQLLGFEIVAYAGDARSKLLEALNAANEGDFEKAEQLTEEANECIANAHKAQTNLLAQEAQGDDIAFSITMIHGQDHLMTTLLLKDLMKHLIELYKKGS*	mmseqs_cdd	nonviral_gene	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0002	persistent	direct	high	314	0.997	GCA_018456105.1_00869
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	895142	895384	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	1318	1560	GCA_018456105_1_1_794	GCA_018456105_1_1_794	+	2270862	.	TIGR00394	phosphotransferase system, lactose specific, IIC component. This family of proteins models the IIC domain of the phosphotransferase system (PTS) for lactose. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to lactose. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]	MNKLIAWIEKGKPFFEKISRNIYLRAIRDGFIAAIPIILFSSIFILITYVPNVFGFTWSKTMEGILMKPYNYTMGIVGLS*	mmseqs_cdd	nonviral_gene	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0003	persistent	direct	high	242	0.996	GCA_018456105.1_00870
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	895464	896600	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	1640	2776	GCA_018456105_1_1_795	GCA_018456105_1_1_795	-	2270862	.	PDB:1Z19_B	Integrase	MIKKYKKKDGSTAYMFVAYLGVDPITRKQKRTTRRGFKTEREAKIAEAKLQTEVQANGFLNTEIMTFKQIYELWLEQYRNTVKESTYQQAMTTFKMMILPHFKDMAIKDITVPHCQKVLNEWYRTYSETKKGRIYASTIFEYAISLKIITDNPFNHIKAPRKKSNQKHETMKYYTSDELQQFLELVKDNVLHHALFRTLAFTGIRRGELMALTWNDIDFTNQTLSVNKTLAEGLNHRQFIDTPKTRSSIRTISVDSKTLEVLKDWRTQQRVLSLKHGHNTSSKHQEIFTNVETNKRLNRVYANETLNLICKKNNFKRITVHGFRHTHCSLLFEAGLSVQEVQDRLGHGDIQTTMGIYAHVTEKQREKVAEKFANYVSF*	common_virus_hmm	common_virus	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0004	shell	direct	high	1136	0.999	GCA_018456105.1_00871
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	896937	897170	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	3113	3346	GCA_018456105_1_1_796	GCA_018456105_1_1_796	-	2270862	.	.	hypothetical protein	MYFNDWKVTINGKGSHDVVTNEDTLLILQDYQHVEIALKLVNDTIQVKSLGYGEDVSINPTTKEITVNVTNLLEDDE*	.	hypothetical_protein	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0005	shell	direct	high	233	0.996	GCA_018456105.1_00872
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	897275	897922	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	3451	4098	GCA_018456105_1_1_797	GCA_018456105_1_1_797	-	2270862	.	PFAM:PF10078.8	transcriptional-regulator	MNENNFELGSYLKSIRNEYDITTRNLGKKIGFSHSYISSVENNAKRNPSQDFIEKYLMGVTGNKTMDVNFFIENINKLSDNKFSFKTLDTVDDLFPYISNVVEKFVNQHIFTYKTKNKNNDKKISKDISFEIPINDINFHLTDIENFKFFGGIPLYETEKKEIIKLICNYLNSIYSHNLQLLKDLYNNNKISKESFEEEKEKFEDYLELLKRIQY*	phrogs_hmm	hypothetical_protein	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0006	cloud	direct	high	647	0.998	GCA_018456105.1_00873
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	898125	898295	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	4301	4471	GCA_018456105_1_1_798	GCA_018456105_1_1_798	+	2270862	.	PFAM:PF13411.5	HTH-DNA-binding-protein	MILTVKEAAEFLRISERYAYKLIKDNKLPHFRLGKKILIQKNSLIKYVHDIESKEV*	phrogs_hmm	hypothetical_protein	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0007	cloud	direct	high	170	0.994	GCA_018456105.1_00874
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	898298	898567	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	4474	4743	GCA_018456105_1_1_799	GCA_018456105_1_1_799	+	2270862	.	PFAM:PF10013.8	excisionase-and-transcriptional-regulator	MTEQQPILSESASLELANGILKIAEQIAQRKIEQQQKRWATQTELRKLYRCTHSDITEWERLGLTKRKQGRSYYYDLKEVEEFLLSQKK*	phrogs_hmm	hypothetical_protein	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0008	shell	direct	high	269	0.996	GCA_018456105.1_00875
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	898902	899153	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	5078	5329	GCA_018456105_1_1_800	GCA_018456105_1_1_800	+	2270862	.	.	hypothetical protein	MKLFKKKYDHKKVNKVKDMILYTSYSFEAKAYEEAIELLKDNNKQKAIELMYERLIEAQRKEYEMKLEIEKASSVHASQSRNR*	.	hypothetical_protein	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0009	shell	direct	high	251	0.996	GCA_018456105.1_00877
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	899207	899431	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	5383	5607	GCA_018456105_1_1_801	GCA_018456105_1_1_801	+	2270862	.	PFAM:PF04492.12	DnaD-like-helicase-loader	MTNKIKCSKGYGVITQSVMSSKDISIEAKALYCYYMAHVGDNIIPSATQTCNDLMISYKRFKTLRTQLFERGFL*	phrogs_hmm	hypothetical_protein	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0010	shell	direct	high	224	0.996	GCA_018456105.1_00878
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	899467	900279	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	5643	6455	GCA_018456105_1_1_802	GCA_018456105_1_1_802	+	2270862	.	PFAM:PF07261.10	DNA-polymerase-B	MATYRVKKESGNFVTIHKGFITDDRLSAKAKGILLYLLSRPDDWQIYTAEIKKHMKDGIKSINTGIHELIEYGYIKRSKKRQDSGVFNGYEYIVYETPTEMPFSENGLSANGFSENGKTENRKRHTTNINNTYKDLTNNYDTEINSSSSASTTKQQPPSHSYSNVFNFYQENGFGILQPFVVDQIDNWIDDFNGNENIVIEALKEAATNNVCKWSYANSILKSWYQDGIKSIDDIEARRKQREASKNKVQQSTKDTDDDWLNSPERQQYL*	rep_hall_hmm	common_virus	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0011	shell	direct	high	812	0.999	GCA_018456105.1_00879
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	900301	901092	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	6477	7268	GCA_018456105_1_1_803	GCA_018456105_1_1_803	+	2270862	.	PDB:4M4W_K	Replicative-helicase	MKSLETLMNNNKKRGKILKVEENLFCEGCKNRYDYYEIEKSDGTIQEIKSGCDCEAKQMAEQKVKEYKAKIKRSEIDRMFNKSKVNDDLQSATFDNYIPRNESQQKAKDTMQRYAQNFNLDNKQSIMLRGSFGLGKSALAMATIKEIKEKGYTVLFYDITELIALFRDTMSKSAKYTETELINRIKACDVLVIDDLSPNLTDFEKGKLFSVINARVNKHNIITTNNTNQELTADKMLTKIYSRMMMNTTVIEVEGTDYRLTKK*	rep_hall_hmm	common_virus	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0012	shell	direct	high	791	0.999	GCA_018456105.1_00880
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	901152	901994	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	7328	8170	GCA_018456105_1_1_804	GCA_018456105_1_1_804	+	2270862	.	PFAM:PF05263.10	spore-coat-protein	MASLKQAYQPDTDTEDIEMVSDYTLFTLYNPKFIEKKAESIREGIETLYERNKPHMASDNITGILYYESVNIEHLAIQIIEEKEKLESYLKKSNRNLYHLYAVLDGYTKQEQIFIKNYIRNTKVRDNELIRRFKIDLYNYVQAKREKRQEEHNKKSFNAYLVDKDEVRKRQQKKKINNGYGLTLNQEKELRLIKEHEAERNTDMGAFIDSIQQMNNDELLSYVLDRHEFNIDSYNLKILTDAALYRFPLKQRKQAYNHLKAITRVLTNNPIEKRLKQYEQ*	phrogs_hmm	hypothetical_protein	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0013	shell	direct	high	842	0.999	GCA_018456105.1_00881
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	901984	902217	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	8160	8393	GCA_018456105_1_1_805	GCA_018456105_1_1_805	+	2270862	.	.	hypothetical protein	MNNDEMNKLSEALELSESQRLALYNYSEREAKEKAQTQEQKKELSSLEKHEKRQQIMSIKDANQRQEEIAKHVELFK*	.	hypothetical_protein	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0014	shell	direct	high	233	0.996	GCA_018456105.1_00882
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	902229	902750	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	8405	8926	GCA_018456105_1_1_806	GCA_018456105_1_1_806	+	2270862	.	.	hypothetical protein	MKTLKQIEVHKKNIESYQKDIQALEQEVNSEKETIDQLNADYQELVISGQVEKADKLYTKIDKQETTYKAKVKRLSVMKQSLKQVIIKNCSSMQEEADKLSDEYIETYNDDLQHYNKLKEELKQAEQTLEQHNNDYLLKQRNLSHYIDRLTRENNIQPTEFMGSVNSRKPFYI*	.	hypothetical_protein	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0015	shell	direct	high	521	0.998	GCA_018456105.1_00883
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	902811	903050	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	8987	9226	GCA_018456105_1_1_807	GCA_018456105_1_1_807	+	2270862	.	PFAM:PF03592.15	Terminase-small-subunit	MKKLTTKQRRFADEYIETGNPYYSAVKVGYSEIYARDNALKLLENVSVKSYIYERLEEIKNDNMVENYEVMRYLTRLIQ*	hallmark_hmm	common_virus	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0016	shell	direct	high	239	0.996	GCA_018456105.1_00884
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	903076	903504	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	9252	9680	GCA_018456105_1_1_808	GCA_018456105_1_1_808	+	2270862	.	PFAM:PF03592.15	Terminase-small-subunit	MKSLTLKQKQFADEYIRTGNAYQSAINVGYSEKYAKARSHKMLENVGINQYIDDNLEIIQKESIAEADEIMRYLTRVLRAEEKEEILVYVGDGMQEIQTIQPSAKDRIKAAELLGKRYRMWTEKQEIEITTPIFIDDVPLED*	hallmark_hmm	common_virus	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0017	shell	direct	high	428	0.998	GCA_018456105.1_00885
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	903851	904012	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	10027	10188	GCA_018456105_1_1_809	GCA_018456105_1_1_809	+	2270862	.	PFAM:PF05106.11	holin	MKISQWIISLVVGILIFLVVFFIGDNSFSVALFCGIIGFIGNALIGWNARRKM*	phrogs_hmm	hypothetical_protein	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0018	cloud	direct	high	161	0.994	GCA_018456105.1_00886
GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote	cenote	CDS	904186	904686	GCA_018456105.1	JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105.1_JAGMUC010000001.1	GCA_018456105.1|JAGMUC010000001.1	GCA_018456105_1_1	GCA_018456105_1_1@C60	10362	10862	GCA_018456105_1_1_810	GCA_018456105_1_1_810	+	2270862	.	4LQE_A	MepB	MNSNYISIAFLNEIPLFDRNFSLIKHEFEQWNQEYEAFNFEFNGVEFKSRLAKKTSKKSGYFVAFWCKNEINKNRPFNFDESKDKLIINILDESKKGQFIFPKELLVKKGIISSEKHKGKMAIRVYPSWEQSLNKTAVSTQKWQIPYFLDFSKGFDKKKIKELYLG*	hhsuite_tools	nonviral_gene	C60	10862	893825	904687	GCA_018456105.1|JAGMUC010000001.1@region_893826_904687@tool_cenote_CDS_0019	shell	direct	high	500	0.998	GCA_018456105.1_00887