core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_019375865.1|JAHXCQ010000032.1@region_1_5246@tool_cenote	cenote	CDS	1	872	GCA_019375865.1	JAHXCQ010000032.1	GCA_019375865.1|JAHXCQ010000032.1	GCA_019375865.1_JAHXCQ010000032.1	GCA_019375865.1|JAHXCQ010000032.1	GCA_019375865_1_25	GCA_019375865_1_25	1	873	GCA_019375865_1_25_1	GCA_019375865_1_25_1	-	5246	.	PDB:1WRU_A	Tail-protein	MSIPFNPVTISVGKKSLSSFISLQIEQNIGTHHRFQMSVELESGGNRYVHNISGSKEWLGKNIVVKAAGTPFFVGVVTNIQLHREGSDFGCIIVSGYSATYRMETAPGCFSWNDTTIGNVVKKLCEQAKVPLELNPAYKENKDYICQYEESDFDFVRRLAYQYQEWMYFDGTKLIFGKPRKLADPIRLEYGTTLSSLDIGLQTLARSEQVFSYHSGADREMQRMTPDLAYGHDRLSGEAFRASLGMFPKPARQHALPRISDETELINYMGRKQAAETAETHYITAESQVPT	hallmark_hmm	common_virus	NaN	.	0	5246	GCA_019375865.1|JAHXCQ010000032.1@region_1_5246@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_019375865.1|JAHXCQ010000032.1@region_1_5246@tool_cenote	cenote	CDS	1067	1714	GCA_019375865.1	JAHXCQ010000032.1	GCA_019375865.1|JAHXCQ010000032.1	GCA_019375865.1_JAHXCQ010000032.1	GCA_019375865.1|JAHXCQ010000032.1	GCA_019375865_1_25	GCA_019375865_1_25	1068	1715	GCA_019375865_1_25_2	GCA_019375865_1_25_2	-	5246	.	.	hypothetical protein	MKLKYKFKIDSLLDFWDIPARIYFMAATLFFLIPFYVIGLLTVKDDLPHRTGIVNGIHILQKSHSGWEANFTLEGDTSHTYWQGYENSYPFFLFPPKYKLDDYRIHKGDTISFFIDNDKNGNYIKSDRFIPGEGHSFESDEVIYTEGLIVNGKEIASPLVVAFIRTPLTWLGNVGVICFYIWMCLFVIDFGMWYNKKNIIKKTKKYFYNQNIFIR*	.	hypothetical_protein	NaN	.	0	5246	GCA_019375865.1|JAHXCQ010000032.1@region_1_5246@tool_cenote_CDS_0002	cloud	direct	high	647	0.998	GCA_019375865.1_01502
GCA_019375865.1|JAHXCQ010000032.1@region_1_5246@tool_cenote	cenote	CDS	1698	2903	GCA_019375865.1	JAHXCQ010000032.1	GCA_019375865.1|JAHXCQ010000032.1	GCA_019375865.1_JAHXCQ010000032.1	GCA_019375865.1|JAHXCQ010000032.1	GCA_019375865_1_25	GCA_019375865_1_25	1699	2904	GCA_019375865_1_25_3	GCA_019375865_1_25_3	-	5246	.	.	hypothetical protein	MKALVPAGTYAVCTNGMKMGKMIVTSQTTVKTSKGRLIATLKDKPTNFSCVWAGIIAAAVAAIVLALATTLGPLAVVIIATIAGMRGSFTLGSMLCYFCLKGIPWLPDSEHPNVLISGNKALVHTAQITCTPLGFLPSGNIQLFFDKSVASRIATVFFLKNSLNILEGAAFGAGVAGLGKIAVKVFTGVGGGLMGTTAAGIVTAGLIGSGYAIGHRIDIIQNSSSTALANWITAGDYDKYENSKKKDNEEKYIDKVEKGISNQPGDSEVIPPYTNQSDINTKLNIGTQATGEMMKVSWGRVKADPAYHTGMPKSDLNKLLSKYMKEVSTEVKLRNASLSKNMALKENVLKSLKDFFVVNGICIGANIVGQTASKVIKTGVDKDMNKEISALSKIGIYEIKV*	.	hypothetical_protein	NaN	.	0	5246	GCA_019375865.1|JAHXCQ010000032.1@region_1_5246@tool_cenote_CDS_0003	cloud	direct	high	1205	0.999	GCA_019375865.1_01503
GCA_019375865.1|JAHXCQ010000032.1@region_1_5246@tool_cenote	cenote	CDS	2900	3772	GCA_019375865.1	JAHXCQ010000032.1	GCA_019375865.1|JAHXCQ010000032.1	GCA_019375865.1_JAHXCQ010000032.1	GCA_019375865.1|JAHXCQ010000032.1	GCA_019375865_1_25	GCA_019375865_1_25	2901	3773	GCA_019375865_1_25_4	GCA_019375865_1_25_4	-	5246	.	.	hypothetical protein	MDNKNNFTKAEVFPDNIVRKYQVETISKYTISGRPLFETSSKMEMSVVCSEIVGNHYLLDIRIQSQANNYGLEFLEQKYLNLLDKVNDIQSHLLVSMDLGGKLKDILNFSELHEKWERIKANITDPSAEISKIISDGDLQYTHGSQSFAEELNKMTLYKTLGMGLLSFDGIRKEDDKTFPYNTSSLLFPQINKKVSIALDDIVHFSDTPAYLLIFKNKHSREDSEIKSEFIKNFPFLKRQMGKYKYALFCSVEKDNKSRWPNSIELTISEVLEPIVSDVACKIELIKEKL*	.	hypothetical_protein	NaN	.	0	5246	GCA_019375865.1|JAHXCQ010000032.1@region_1_5246@tool_cenote_CDS_0004	cloud	direct	high	872	0.999	GCA_019375865.1_01504
GCA_019375865.1|JAHXCQ010000032.1@region_1_5246@tool_cenote	cenote	CDS	3795	5243	GCA_019375865.1	JAHXCQ010000032.1	GCA_019375865.1|JAHXCQ010000032.1	GCA_019375865.1_JAHXCQ010000032.1	GCA_019375865.1|JAHXCQ010000032.1	GCA_019375865_1_25	GCA_019375865_1_25	3796	5244	GCA_019375865_1_25_5	GCA_019375865_1_25_5	-	5246	.	COG3501	Uncharacterized conserved protein, implicated in type VI secretion and phage assembly  [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only]. 	NDTTIGNVVRKLCEQAKVSLELNPAYRENKDYICQYEESDFDFVRRLAYQYQEWMYFDGTKLIFGKPRKLADPIRLEYGTTLSSLDIGLQTLARSEQVFSYHSGADREMQRMTPDLAYGHDRLSGEAFRASLGMFPKPARQHALPRISDETELINYMGRKQAAETAETHYITAESQVPTLRVGSVISLYSSFLERAGDISKESLGNFIIIEMTHEVSQGSYYRNRFKAIPATVKALPGPKVRMPLAETQMATVLSNADPDGKGRVRVHMNWQTDGMQTGWVRVMTPDGGSSSDVKSNRGFVFIPEVGDQVLLGFRHGDPARPYVMGSLFNGVTGGGGGQGNNCKSLTTRSGSSLKLDDSAGSVTLHDKGGVSMNFDGAGNQSLATRASATTTVGKDASVLRMDKDGVIRLSGHNNIKLEIDKDTYIEMSAGKISLHAGNIECEGTNITINGSTETEIKKGKDSKISVQDNITLSGAPDIIIN*	mmseqs_cdd	nonviral_gene	NaN	.	0	5246	GCA_019375865.1|JAHXCQ010000032.1@region_1_5246@tool_cenote_CDS_0005	cloud	direct	moderate	1428	0.986	GCA_019375865.1_01505
GCA_019375865.1|JAHXCQ010000047.1@region_1_1558@tool_cenote	cenote	CDS	169	567	GCA_019375865.1	JAHXCQ010000047.1	GCA_019375865.1|JAHXCQ010000047.1	GCA_019375865.1_JAHXCQ010000047.1	GCA_019375865.1|JAHXCQ010000047.1	GCA_019375865_1_41	GCA_019375865_1_41	170	568	GCA_019375865_1_41_1	GCA_019375865_1_41_1	+	1558	.	pfam17642	Hemolysin coregulated protein Hcp (TssD). T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. These tube and trans-envelope sub-assemblies are linked via TssK. This entry comprises family members such as the inner tube protein Hcp (TssD). Hcp proteins form hexamers that stack to form the inner tube/needle structure of the puncturing device. Other functions have also been described for Hcp proteins, for example, some Hcp proteins have been shown to have a chaperone function in that they bind to and stabilize effectors. In addition, there are evolved Hcp proteins that have the Hcp domain at the N-terminal half of the protein and a toxic effector function present in the C-terminal portion of the protein.	MSSFRATLELGGKEYDVLYSNYEFSRTTDKKGQPASSISGGRISVTIESTDDTSTIEAMLNSQFKPVEGKIVYKKSEEDAKMKEISFKNAYIVHYKETLDVNNEAPMTIAMTFSAENITVGNAELDNRWPRS*	mmseqs_cdd	nonviral_gene	NaN	.	0	1558	GCA_019375865.1|JAHXCQ010000047.1@region_1_1558@tool_cenote_CDS_0001	shell	direct	high	398	0.997	GCA_019375865.1_01760
GCA_019375865.1|JAHXCQ010000047.1@region_1_1558@tool_cenote	cenote	CDS	763	1557	GCA_019375865.1	JAHXCQ010000047.1	GCA_019375865.1|JAHXCQ010000047.1	GCA_019375865.1_JAHXCQ010000047.1	GCA_019375865.1|JAHXCQ010000047.1	GCA_019375865_1_41	GCA_019375865_1_41	764	1558	GCA_019375865_1_41_2	GCA_019375865_1_41_2	+	1558	.	PDB:1WRU_A	Tail-protein	MSIPFNPITITIGKNSLPSFISLHIDQRIGAHHEFKMAVELESGGNRYVHNISGSKEWLGESIVVKAANKPVFVGVVTNIQLHREGSDFGCIIVSGYSATYRMETAPGCFSWNDTTIGNVVKKLCEQAKVSLELNPAYRENKDYICQYEESDFDFIRRLAHQYQEWMYFDGTKLIFGKPRKLADPIILEYGTTLSSLDIGLQTLARSEQVFSYHSGADREMQRMTPDLAYGHDKLSGDAFRASLGMFSKPARQHALPRISDESEL	hallmark_hmm	common_virus	NaN	.	0	1558	GCA_019375865.1|JAHXCQ010000047.1@region_1_1558@tool_cenote_CDS_0002	.	unmatched_CDS	none	0	0	.