core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_019375895.1|JAHXCV010000049.1@region_1_4872@tool_cenote	cenote	CDS	1	623	GCA_019375895.1	JAHXCV010000049.1	GCA_019375895.1|JAHXCV010000049.1	GCA_019375895.1_JAHXCV010000049.1	GCA_019375895.1|JAHXCV010000049.1	GCA_019375895_1_43	GCA_019375895_1_43	1	624	GCA_019375895_1_43_1	GCA_019375895_1_43_1	+	4872	.	COG3501	Uncharacterized conserved protein, implicated in type VI secretion and phage assembly  [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only]. 	EVGDQVLLGFRHGDPARPYVMGSLFNGTTGGGGGQGNKCKSLTTRSGSSLKLDDSDGSVTLHDKGGVSMNFDGAGCSSFDSKKNSTLNAGQSHIINAGSTSSVNAGENYSANVGKGASCLNMDANGDIVLEGKNKITIKVGENTITISADGIVTNAESGDVKTTATTGSVTIESTSSEASFKGSTNTNIGGGDCTYVTATDVEINQS*	mmseqs_cdd	nonviral_gene	NaN	.	0	4872	GCA_019375895.1|JAHXCV010000049.1@region_1_4872@tool_cenote_CDS_0001	cloud	direct	moderate	563	0.904	GCA_019375895.1_01792
GCA_019375895.1|JAHXCV010000049.1@region_1_4872@tool_cenote	cenote	CDS	634	1521	GCA_019375895.1	JAHXCV010000049.1	GCA_019375895.1|JAHXCV010000049.1	GCA_019375895.1_JAHXCV010000049.1	GCA_019375895.1|JAHXCV010000049.1	GCA_019375895_1_43	GCA_019375895_1_43	635	1522	GCA_019375895_1_43_2	GCA_019375895_1_43_2	+	4872	.	.	hypothetical protein	MKVLFFPEIGQSAYFLITTANRIIMGNNITEYVLDRLVEVELKEVREDALFVRFCSHRHDVKGTSLVHYFNNELCDIYSDIDIVVGYDGKVRDISDFDFINDRWENKRPDILKNYSQDIKPLVDGTSLLLKDKEKFIDSLFGGYSFWRFFFQPWYRREYKETENEKILLKNYFGDISLPLDVKSSILSRQDDDSIVWKIKNTASLDSKGFDRKGFARMLKNLTKVYNIDASLAVDFEENYTFIKNGTLSEAELFLNTSVSNWYIVLTGHKLIQVSKTGLEKLKEAENMAETLENA*	.	hypothetical_protein	NaN	.	0	4872	GCA_019375895.1|JAHXCV010000049.1@region_1_4872@tool_cenote_CDS_0002	cloud	direct	high	887	0.999	GCA_019375895.1_01793
GCA_019375895.1|JAHXCV010000049.1@region_1_4872@tool_cenote	cenote	CDS	1532	2902	GCA_019375895.1	JAHXCV010000049.1	GCA_019375895.1|JAHXCV010000049.1	GCA_019375895.1_JAHXCV010000049.1	GCA_019375895.1|JAHXCV010000049.1	GCA_019375895_1_43	GCA_019375895_1_43	1533	2903	GCA_019375895_1_43_3	GCA_019375895_1_43_3	+	4872	.	cd20738	Polymorphic Nuclease effector (PoNe) co-occurring with an N-terminal DUF4280 domain. The DNase toxin domain called PoNe (Polymorphic Nuclease effector) belongs to a diverse superfamily of PD-(D/E)xK phosphodiesterases, and is associated with several toxin delivery systems including type V, type VI, and type VII. PoNe toxicity is antagonized by cognate immunity proteins (PoNi) containing DUF1911 and DUF1910 domains. This subfamily contains proteins with PoNe domains that typically co-occur with an N-terminal domain of unknown function (DUF4280), which has a single completely conserved residue C that may be functionally important.	MTKKYIPDNCTLFCDKGEIPTQIKVTHSNNSSLYGEYFVSEADMVPNENIFPFGICSLTHKPCRFNPLYWDKCAEGIKVNGYKLVFEDASLICKEGGKITADFTVPSTGMLSGLGLAAPLQWLDYNKSIGFVQNRILYDVAHKNIKLVNDAMKANYGEILDNRLYSSQGWSNIRKSHPIIDIRSTNSLKSGIDGVYTKNGEYLVTDAKAYNTMRSPSLDTGASSGRELSQGWVENHIRNGTVKDSHTAAITTANNEGKLQRSVTQVNHTNRDMRSIPVDDDGYVYKRGRKILSETIENPPSKAGGFINSVRSNTANSKFVKGIENLSSKAGIPNSKAATKANDFLWKASQSIDDMPVLKTTGKVVGKGAIVVGIAIDAYSIYSAYNEEGEFGDKTQQATGSAIGGAAGGWAGAELGAIIGTAICPGVGTLIGGVVGGIAGGILGSMGGSALVDSIF*	mmseqs_cdd	nonviral_gene	NaN	.	0	4872	GCA_019375895.1|JAHXCV010000049.1@region_1_4872@tool_cenote_CDS_0003	cloud	direct	high	1370	0.999	GCA_019375895.1_01794
GCA_019375895.1|JAHXCV010000049.1@region_1_4872@tool_cenote	cenote	CDS	2925	3719	GCA_019375895.1	JAHXCV010000049.1	GCA_019375895.1|JAHXCV010000049.1	GCA_019375895.1_JAHXCV010000049.1	GCA_019375895.1|JAHXCV010000049.1	GCA_019375895_1_43	GCA_019375895_1_43	2926	3720	GCA_019375895_1_43_4	GCA_019375895_1_43_4	+	4872	.	2FEF_A	hypothetical protein PA2201	MGLFDFFFNRSKQEQDKPIRDKLKTRKDFEKVLEEDLDIMKKTIVKIDTAQDINLYMYRSISYSYILIFQSKYSMDAKIGELRHIYMKSMGYFLQAFNKRNPIYADILNYVSLGLLLNIPDENFKQLIDYVKQMDKQAKPPVWTPDQLLWFLLNSRLKEDEKQTYADKLAFPKLYKGLFKLTQISDAQEAKKALEDYIGKWYNLNKNAPWYNSHLKKNCYRGYWAWEVAAVAKIMHIDDSDLKDNPYYPYDMVHWEVTGTATEE*	hhsuite_tools	nonviral_gene	NaN	.	0	4872	GCA_019375895.1|JAHXCV010000049.1@region_1_4872@tool_cenote_CDS_0004	cloud	direct	high	794	0.999	GCA_019375895.1_01795
GCA_019375895.1|JAHXCV010000049.1@region_1_4872@tool_cenote	cenote	CDS	3763	3924	GCA_019375895.1	JAHXCV010000049.1	GCA_019375895.1|JAHXCV010000049.1	GCA_019375895.1_JAHXCV010000049.1	GCA_019375895.1|JAHXCV010000049.1	GCA_019375895_1_43	GCA_019375895_1_43	3764	3925	GCA_019375895_1_43_5	GCA_019375895_1_43_5	+	4872	.	pfam17642	Hemolysin coregulated protein Hcp (TssD). T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. These tube and trans-envelope sub-assemblies are linked via TssK. This entry comprises family members such as the inner tube protein Hcp (TssD). Hcp proteins form hexamers that stack to form the inner tube/needle structure of the puncturing device. Other functions have also been described for Hcp proteins, for example, some Hcp proteins have been shown to have a chaperone function in that they bind to and stabilize effectors. In addition, there are evolved Hcp proteins that have the Hcp domain at the N-terminal half of the protein and a toxic effector function present in the C-terminal portion of the protein.	MSLGEISFKNAYIVHYKETLDVNNEAPMTIAMTFSAENITVGNAELDNRWPRS*	mmseqs_cdd	nonviral_gene	NaN	.	0	4872	GCA_019375895.1|JAHXCV010000049.1@region_1_4872@tool_cenote_CDS_0005	cloud	direct	high	161	0.994	GCA_019375895.1_01796
GCA_019375895.1|JAHXCV010000049.1@region_1_4872@tool_cenote	cenote	CDS	4100	4633	GCA_019375895.1	JAHXCV010000049.1	GCA_019375895.1|JAHXCV010000049.1	GCA_019375895.1_JAHXCV010000049.1	GCA_019375895.1|JAHXCV010000049.1	GCA_019375895_1_43	GCA_019375895_1_43	4101	4634	GCA_019375895_1_43_6	GCA_019375895_1_43_6	+	4872	.	PDB:1WRU_A	Tail-protein	MSIPFNPITISVGKKSLSSFISLQIEQNIGKHHRFQMSVELETGSSRYVHNINSSKDWLGESIVVKAANKPIFVGVVTNVQLHREGSDFGCIIVSGYSVTYRMETAHSCFSWNDTTIGDVVKKLCAEAKVQLELNPAYKENKDYICQYEESDFDFIRRLAYQYQEWMYFDGTKLIVP*	hallmark_hmm	common_virus	NaN	.	0	4872	GCA_019375895.1|JAHXCV010000049.1@region_1_4872@tool_cenote_CDS_0006	cloud	direct	high	533	0.998	GCA_019375895.1_01797
GCA_019375895.1|JAHXCV010000070.1@region_1_1521@tool_cenote	cenote	CDS	2	1192	GCA_019375895.1	JAHXCV010000070.1	GCA_019375895.1|JAHXCV010000070.1	GCA_019375895.1_JAHXCV010000070.1	GCA_019375895.1|JAHXCV010000070.1	GCA_019375895_1_67	GCA_019375895_1_67	3	1193	GCA_019375895_1_67_1	GCA_019375895_1_67_1	-	1521	.	PDB:1WRU_A	Tail-protein	MSIPFNPITISIGKRSLSSFISLQIEQNIGKHHRFQMSVELETGSNRYVHNINSSKDWLGESIVVKAANTPIFVGVVTNVQLHREGSDFGCIIVSGYSATYRMETAHSCFSWNDTTIGDVVKKLCAEAKVQLELNPAYKENKDYICQYEESDFDFIRRLAYQYQEWMYFDGTKLIFGKPRKLADPIILEYGTTLSSLDIGLQTLARSEQVFSYHSGADREMQRMTPDLAYGHDKLSGDAFRASLGMFSKPARQHALPRISDESELINYMGRKQAAETAETHYITAESQVPTLRVGSVVSLYSSFLERVGNISKESLGNFIIIEITHEVSQGSYYKNRFKAIPATIKALPSPKVRMPLAETQMATVLSNADPQGKGRVRVRMNWQTDGMHTGWVRVMT	hallmark_hmm	common_virus	NaN	.	0	1521	GCA_019375895.1|JAHXCV010000070.1@region_1_1521@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_019375895.1|JAHXCV010000070.1@region_1_1521@tool_cenote	cenote	CDS	1371	1520	GCA_019375895.1	JAHXCV010000070.1	GCA_019375895.1|JAHXCV010000070.1	GCA_019375895.1_JAHXCV010000070.1	GCA_019375895.1|JAHXCV010000070.1	GCA_019375895_1_67	GCA_019375895_1_67	1372	1521	GCA_019375895_1_67_2	GCA_019375895_1_67_2	-	1521	.	pfam17642	Hemolysin coregulated protein Hcp (TssD). T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. These tube and trans-envelope sub-assemblies are linked via TssK. This entry comprises family members such as the inner tube protein Hcp (TssD). Hcp proteins form hexamers that stack to form the inner tube/needle structure of the puncturing device. Other functions have also been described for Hcp proteins, for example, some Hcp proteins have been shown to have a chaperone function in that they bind to and stabilize effectors. In addition, there are evolved Hcp proteins that have the Hcp domain at the N-terminal half of the protein and a toxic effector function present in the C-terminal portion of the protein.	EISFKNAYIVHYKETLDVNNEAPMTIAMTFSAENITVGNAELDNRWPRT*	mmseqs_cdd	nonviral_gene	NaN	.	0	1521	GCA_019375895.1|JAHXCV010000070.1@region_1_1521@tool_cenote_CDS_0002	.	unmatched_CDS	none	0	0	.