core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	1	81	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	2	82	GCA_019456735_1_30_1	GCA_019456735_1_30_1	+	18744	.	.	hypothetical protein	VDPIVEETEPWSWLHELVEKYNEEVE*	.	hypothetical_protein	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	81	242	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	82	243	GCA_019456735_1_30_2	GCA_019456735_1_30_2	+	18744	.	.	hypothetical protein	MSLTLNSTIRDLVLAIEEVIVGSDGKTTTAILEIPDQSFYLEIELKLKEEVID*	.	hypothetical_protein	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0002	shell	direct	high	161	0.994	GCA_019456735.1_01226
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	239	499	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	240	500	GCA_019456735_1_30_3	GCA_019456735_1_30_3	+	18744	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILVSAGLNIWQMDRIRDLEEKKPLVIYKADNAGAEIFGKVVEKGRHGKLYTLTIRDYGIFVVTKDVYEKIRVGDEVLL*	mmseqs_cdd	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0003	persistent	direct	high	260	0.996	GCA_019456735.1_01227
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	496	987	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	497	988	GCA_019456735_1_30_4	GCA_019456735_1_30_4	+	18744	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MNTLEKVKQWFIDRDLENGGRLDKQSLKLSEEFGELCAGYLKKNEKLTKDSIGDCAVVIVGLGLLSKVDLDSIFEESKNVRKNDIMTSFAYANTCISNIQTEQHLKLMTLRIKSLTLLIGHLKSISKSLGYDFEECFELAYQEIKDRKGRWIDGSFVKEEDLA*	phrogs_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0004	shell	direct	high	491	0.998	GCA_019456735.1_01228
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	984	1370	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	985	1371	GCA_019456735_1_30_5	GCA_019456735_1_30_5	+	18744	.	TIGR01671	phage uncharacterized protein TIGR01671. This model represents an uncharacterized, well-conserved family of proteins found in bacteriophage and prophage regions of Gram-positive bacteria. [Mobile and extrachromosomal element functions, Prophage functions, Hypothetical proteins, Conserved]	MIPKFRVWHYELGGLMSVKCMFFQDSEIEEFELNDALMNDYITAYPDEIELMQSTGLKDKNGKEVFVGDIIKCTRGCPHEVYLEKEYGGTFIGGMPAVYLKDLGEGYAWTEHEEVIGNIYENPEFLEE*	mmseqs_cdd	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0005	cloud	direct	high	386	0.997	GCA_019456735.1_01229
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	1391	1744	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	1392	1745	GCA_019456735_1_30_6	GCA_019456735_1_30_6	-	18744	.	COG2337	mRNA-degrading endonuclease, toxin component of the MazEF toxin-antitoxin module [Defense mechanisms]. 	MTAKYDYIPEKQDIIWIDFDPSVGREIQKRRPAIVVSRREYSERTGFVAVCPITHGQSRLEEQGLLVPVRSNKVDGSVNPLQLYTFDFRERRAQKITTMDTTSFQKVVQLYNFIFEA*	mmseqs_cdd	nonviral_gene	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0006	shell	direct	high	353	0.997	GCA_019456735.1_01230
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	1728	1943	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	1729	1944	GCA_019456735_1_30_7	GCA_019456735_1_30_7	-	18744	.	PFAM:PF04014.17	transcriptional-regulator	MNTVKTRKVGNSVTVTIPKTLNVPEGQEMFVYKGVDNVIVLAPKIPDPFSGDADLRMEDDFEGVKFLDSEI*	phrogs_hmm	hypothetical_protein	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0007	shell	direct	high	215	0.995	GCA_019456735.1_01231
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	2072	2518	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	2073	2519	GCA_019456735_1_30_8	GCA_019456735_1_30_8	+	18744	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MRLLKKVDVQFTKKNVYDVLESYRSYVRMAGAEYLPKITTTYSFEPKTFTGKNTATENMVIEHVDAEAEVLEIERAVNCIMDPYVRQVIAKKYMDMKIQLSDKAIYMDLGYSESEFYRMLSRGALEFAEAYRKGKLIVFRKFLGDICK*	mmseqs_cdd	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0008	shell	direct	high	446	0.998	GCA_019456735.1_01232
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	3013	3486	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	3014	3487	GCA_019456735_1_30_9	GCA_019456735_1_30_9	+	18744	.	PFAM:PF03592.15	Terminase-small-subunit	MNERQRRFADEYIISGNAYQSALKAGYSEKYAKARSSELLDNVGISDYIKNRMEELQDEKILTQKQILVMLSEIASGQAKETTVVTTKVAELMTDPVTGKSVKVYNEIPQLVEYPTKNSDRNKALELLGKRYKMWTDKVEADVSGTVVFANESDIPD*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0009	shell	direct	high	473	0.998	GCA_019456735.1_01233
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	3464	4762	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	3465	4763	GCA_019456735_1_30_10	GCA_019456735_1_30_10	+	18744	.	CDD:COG1783	Large-Terminase	MSQTYQIKQNDIVVDLPKTVGIGYGQFWRSRHLYRVVKGSRGSKKSKTTALNYVVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNESLPEITIKATGQKILFRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVTFNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVCDGEWGVAEGLIYENVTVKEFNKDELLRDSAYKLCIGLDFGFTHDPTALCCSLINDTTKEIYVFDEAYKVGLITKEVAKMIKDKGYHRSRIIADSAELRLIEELRSEHGITRIKESRKGKDSIMAGVSKLQGYAIYVHPDCKNIMDEFYSYCYQQDKEGNWLNKPEDKNNHLMDALRYSLQCIEGGKATVRRRSDYGL*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0010	shell	direct	high	1298	0.999	GCA_019456735.1_01234
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	4774	5793	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	4775	5794	GCA_019456735_1_30_11	GCA_019456735_1_30_11	+	18744	.	PDB:5A20_A	Portal-Protein	MYEYLTYPRDGYDEGSLKKDLIYKLITKHSTEGSRLKKLKSYYLGEHAILTHKRRNVNAPNYKTVANHAKDIADTATGYFMGNPIKYNNTAEGDIDELLTAFDGAEIDQVDAQNALNMAIYGRAYEYIYAKEGLTELDSTSIDPENTFMVYDDSIERKPLFAVYYYKVEDDTKDTTKHQAEVFTENLHYHMVLRDSSTGTTQNEEVEEHNLGQIPIIEYRNNHFAIGDYEQQISLIDAYNSLMGNRVNDKEQAVESILVLYGTQLADTPEDAKVAMKILSEEGLLELPGDSARAEFLKNTLDESATEILRTALKEDIYTFSHVPNLTDENFAGNTSGVK*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0011	shell	direct	high	1019	0.999	GCA_019456735.1_01235
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	5922	6455	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	5923	6456	GCA_019456735_1_30_12	GCA_019456735_1_30_12	+	18744	.	PFAM:PF05551.10	homing-endonuclease	MIKDKMHKHLNQVYYSMLARCYDEKHWAYKWYGKRGIGVSDEFSDVAKFRSWAMQNGVEFGLQLDRIDNDKDYSPSNCRWVPEHTNKRNRSDNVKYKGYILRDYLKKLSEENNISFSTLVYRYYRSIKRDDIIVNDETIDDILLNYKKYDLRQFSKGVDMSGKTIVRDEKGRFVTYY*	common_virus_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0012	shell	direct	high	533	0.998	GCA_019456735.1_01236
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	6684	7121	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	6685	7122	GCA_019456735_1_30_13	GCA_019456735_1_30_13	+	18744	.	PDB:5A20_A	Portal-Protein	MGLEMITKTKEANYKRGLRQRIAIFAHYLGMKQIALESHSIVPQFSRGLPKNLLEISQIVNNLEGKVTNRQLISLLPFVEDPDAELEALEEEKKKNMEDMPMFNKDNTKPEDEVEDEESGVLGEEESQSDLPADGQGRKAGRPVR*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0013	shell	direct	high	437	0.998	GCA_019456735.1_01237
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	7084	8580	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	7085	8581	GCA_019456735_1_30_14	GCA_019456735_1_30_14	+	18744	.	PFAM:PF06152.10	minor-capsid-protein	MDKAEKQADQFDKVYQEAKTYLDKEVNKIFDKFQRDYGLSQVEARQVLKNMKDKKNLNELRKVLEARPNDPNIQRLLADLDSPAYSFRMKRLERLSDDLDRMRESIYHSEKTGSDAFYSDLMKDSYYKATFDLQQQTGLAYGFSGLPESEIKHLQSFSWVGDGSTYSTNIWKNTGKLTSSIKDELLMSLMTGRGTRETAQAIAERFNVGQNDARRLVRTESAFFHNQMELLSYEEADIEKYIFVAVLDKRTSRICQEHDNQVYDRDKAVPGVNCPPMHPWCRSTTVGYDEDADYSKLKRRARNPETGKTELVPADMTYKEWYSKYVAKDVKNEIQDYKKSDQTVSRYNTQKLFSDVSNAWDEIGKGGLSKEQLVGLLKSEYELGNFSSDITKLIGVSSAYIDVSSLATSLVRHGQQYSLDEFMLIKEAVQKPYLILDNSERVEKSIISYVKIPNKDKVIMEAVMVPRDEMLVIHFNKVGIRQVKKNGKNMLTLYKKEK*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0014	shell	direct	high	1496	0.999	GCA_019456735.1_01238
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	8870	9439	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	8871	9440	GCA_019456735_1_30_15	GCA_019456735_1_30_15	+	18744	.	PDB:6B0X_d	capsid-scaffolding-protein	MNEETQTVETVEEQKVPAEPAQQPQDEKKYTDADVDAIIDKKFAKWKSEQEAKENEAKKLAKMNADEKQKYQLDQREQELADREKAIARKELTAEAKAMLSERDLPVELVNVVDLTSAETVSQSVAVLQKSWEQAVQKGVQEKLKGGAPMKQAPVDSDGITKEEFARMGYQSRNELYQKNPELYKKLKG*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0015	shell	direct	high	569	0.998	GCA_019456735.1_01240
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	9445	9612	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	9446	9613	GCA_019456735_1_30_16	GCA_019456735_1_30_16	+	18744	.	PDB:4AN5_F	Major-Capsid-protein	MTAGQTKLATMVNPEVMADMVSAKLPKLIKFTPLAYVETALQGQPGNTLTVPAWE*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0016	shell	direct	high	167	0.994	GCA_019456735.1_01241
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	9685	10287	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	9686	10288	GCA_019456735_1_30_17	GCA_019456735_1_30_17	+	18744	.	PDB:4AN5_F	Major-Capsid-protein	MTIKKAAKGYEITDEALLSGLGDPLGQATYQLGLAIANKIDDDLVAVAKTATQHVAEAPTTLATIDKALEIFEDEEDARYVAIINPKDAIKLKTDVAKEWTKGSELGADMVVSGTFGEAAGVQIVRSKKVDEGKGFIVKVSPSQTQTDDANKYGAFVILLKRDVAIETDRDILKKTTVITGDEHYGVYLYDPTRVVKFGE*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0017	shell	direct	high	602	0.998	GCA_019456735.1_01242
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	10299	10481	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	10300	10482	GCA_019456735_1_30_18	GCA_019456735_1_30_18	+	18744	.	PFAM:PF09124.9	endonuclease-VII	MSLLLRRHYIQEEQAGQYSDLENKTLEELKNLAKEAGITGAYKLSKAEIVEVLEDLKSEI*	phrogs_hmm	hypothetical_protein	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0018	shell	direct	high	182	0.995	GCA_019456735.1_01243
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	10471	10659	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	10472	10660	GCA_019456735_1_30_19	GCA_019456735_1_30_19	+	18744	.	.	hypothetical protein	MKFKIKQDFYDWELNVKRLAGEELEITEERYAELADNFASNGVAISDVLEEILPEPEFLEED*	.	hypothetical_protein	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0019	shell	direct	high	188	0.995	GCA_019456735.1_01244
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	10661	10972	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	10662	10973	GCA_019456735_1_30_20	GCA_019456735_1_30_20	+	18744	.	PFAM:PF05135.12	head-tail-adaptor	MSIELLKKMTGEEDTQLLMLLQTRATNLILSETNRTSLTPALSLLIPEVAIELHNRSGAEGEHSRTEGGIAVVYGENGLSTGLLQRIRMHRLARVAGHVFEAE*	phrogs_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0020	shell	direct	high	311	0.997	GCA_019456735.1_01245
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	10953	11291	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	10954	11292	GCA_019456735_1_30_21	GCA_019456735_1_30_21	+	18744	.	PDB:2KX4_A	head-closure-knob	MFLKQSRLKPYPMRRFEKTVTEEGVAKEGYAKEAETVRLELWPAGSKLQSELYGERVNDILNANANKSATIKVKDGVCIDSPTEVTHRVISKKVYTYHQVLELERVRVTRGR*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0021	shell	direct	high	338	0.997	GCA_019456735.1_01246
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	11266	11781	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	11267	11782	GCA_019456735_1_30_22	GCA_019456735_1_30_22	+	18744	.	PFAM:PF04883.11	putative-tail-component	MSELRGADRLIAKCRRLASKKAGEDIVLRAVHNAAIKVVQADAKRLAPGNNGELRNSIKTRVKMDGDKAIGEVYTNLHYAPYVEFGTGPKGQASHSGISPEVSVTYRSSPWYVHEDQINVGPYHFQKIGEFYKMYGQPAQPYLYPALRDNQERVSKNISDYVRRKIREQIK*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0022	shell	direct	high	515	0.998	GCA_019456735.1_01247
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	11778	12146	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	11779	12147	GCA_019456735_1_30_23	GCA_019456735_1_30_23	+	18744	.	PFAM:PF05657.10	tail-component	MINIKPVIYKELQKVADNVTDTYPSDWETFPVVIFLEEQNKPGDWFDDQEQKSSIRYKVDIFDDTSTSELAVKINQIFESLGLRRTDCQDVPDPSHLRHKVMRFEGVVDLHSELVFQFRMEN*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0023	shell	direct	high	368	0.997	GCA_019456735.1_01248
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	12149	12562	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	12150	12563	GCA_019456735_1_30_24	GCA_019456735_1_30_24	+	18744	.	PFAM:PF16463.4	tail-tube-protein	MLANGITLSYSETKGSYTKLVGLKEVPEFGIEPEKVENTTLEDKVKKYEFGIGDAGELEYKFSYNNSSETAPYRVLRKAADDKKKLYFEQAYPDGTKVNFEGQVSVKLGGGGVNAVIEFTLKIALQSELEFTDGLGG*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0024	shell	direct	high	413	0.998	GCA_019456735.1_01249
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	12567	12947	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	12568	12948	GCA_019456735_1_30_25	GCA_019456735_1_30_25	+	18744	.	PFAM:PF12363.7	tail-assembly-chaperone-protein	MALPYSIWKISDEKELKLRLSSHQAAKVEEKIGMNLLKIFMPEAGEEFPLPPLKVVLLLIHGALQKYENGYSLEDVYDLYDEYVDNGGDQTTFMTEVLMPLFEVSGFTPRGSKDKKTSKKKMTVVE*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0025	shell	direct	high	380	0.997	GCA_019456735.1_01250
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	12986	13336	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	12987	13337	GCA_019456735_1_30_26	GCA_019456735_1_30_26	+	18744	.	.	hypothetical protein	MFLDIGGKPLDFWDLTVLEIREMIESYNRVKIQERKEKIIDSYRLSQMISNHVSLLLSKDAKVFEFWEYAPELFVEEQQAVEQERQRQALLLHKERMRDFAERHNRKRKEEMNGNS*	.	hypothetical_protein	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0026	shell	direct	high	350	0.997	GCA_019456735.1_01251
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	13323	13886	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	13324	13887	GCA_019456735_1_30_27	GCA_019456735_1_30_27	+	18744	.	PFAM:PF04582.11	tail-length-tape-measure-protein	MATLDELKVMIDAEIAPFRKKMKEVENQVKGTSDQVKNATAKVREQSNSIGSAFGKLAKFAGFAILGKKLLDVGMYSTQTALEVAASMNQIKRQMGESSQSFLKWVNDNANAMNMGVGEATNYGAVYSNLFSGFIKDTNKLSAYTAKMLQTSAVVAEGSGRTITDVMERIRSGLLGNTEAIDFCRTA*	phrogs_hmm	hypothetical_protein	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0027	shell	direct	high	563	0.998	GCA_019456735.1_01252
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	14188	17214	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	14189	17215	GCA_019456735_1_30_28	GCA_019456735_1_30_28	+	18744	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MAMIESTEAFKRFANGQSWQQLDYQTQQQIRLMAILEQATAKYGNTLSNSVNGRISLFKSLMKDAALNLGNSMLPIINAIMPVLNSFAMVLKNVTAKLAEFIALMFNKKATVKDGVGGAVGDMGNAMKDAAGGAGDLADAVDDAGDSAGGLADNLGDSAKNAKKAAKELLGLLGFDEINILQKPKDDDAGGSGGGGGGKGGKGKGGGGGPFKDILPEVELTDMDNQFKSIFDGLGDKLKGLFDLFKKGFDAAFRPEGIERIKTALDQIAKTMGEIATDPRVVNAFNRMAEKIAYALGQVTGSIATIGLGIGVFLAESIANGLGRQKERITRALVALFDNIGNIAEAVGNIAQAFSSAFYDVITSTGAVRIGSAIVSTLLSLTSTIVEVGSKLAGSLFKGFEKVVVTSAPKISSVFQSLLDTVAPVFESIERCVNKFGDDLSRVYDEHVVPAINSIANAFNGLIDIIQILWENSWQPFAEFLSGVFGVSIEGISDLLGGGLLATLGLLADAIKLVADGFTVFSDWCKENKEPIVALITTWQTINFLSWAEQAGGLAGAFELLSGKVSLIVGGIKNLGLAIKALTFDKLVSFGETIYLNTLYAKDFVVNSGKTIAQLGKTALELGKSALAWTAHAAKMGLATAAEFAHSVAAGVATAATWAFNAALAVLTSPITWIIAAIAALIAIGVLLYQNWDTVVEFAKTAWQGLCDFISGICQSIGEFFSGLWTKLQEIFEPIGQWFGEKFQQGWDAIVNIFTPIGSWFGQRWADVTSALANIGAWFTDMFQKAWTGLTNIFSKLGSWFGERWNDVTSALSSVSNWFGEMFTNAYNAVKDAFSSIGDFFSGVWDTVKSIFVNAGQMVGEAVGGAFKSAVNAVLGTIENVVNGFIGMINGVLDVVRNLPGLGWIGSVSTVSLPRLARGGIVDSPTIAMIGEAGKEAVVPLENTGFIQTLGRVVSSAVVNAMAGVGPQGGFSGDGDIVIQIAGHEFGRVAIQEINKEHERAGQTLLKI*	hallmark_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0028	shell	direct	high	3020	0.998	GCA_019456735.1_01253
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	17223	17573	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	17224	17574	GCA_019456735_1_30_29	GCA_019456735_1_30_29	+	18744	.	.	hypothetical protein	MAQLTINGVAVKPPKSFRVGIQDIDGETGRNANGDMVRDRITTKRKLDCEWGMMTQGEISQLLHAVSSEFFEVSYPDPMDGQVTKTFYVGDRTAPSYTFTEKFKPWSGAKFNLVER*	.	hypothetical_protein	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0029	shell	direct	high	350	0.997	GCA_019456735.1_01254
GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote	cenote	CDS	17578	18741	GCA_019456735.1	JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735.1_JACVSV010000037.1	GCA_019456735.1|JACVSV010000037.1	GCA_019456735_1_30	GCA_019456735_1_30@C0	17579	18742	GCA_019456735_1_30_30	GCA_019456735_1_30_30	+	18744	.	PFAM:PF07902.10	minor-structural-protein	MDALTRRQFDRAMFAKERTLAIRVGDYTSRDIKEASFEYGYIKGDTYKPGGTCAGSGKITFTSIITTFNKLDTLHPEIGLLVGDTYQWVKMGEYFINDIEIDRNRNTTTLELMDGMFKLNREYVTDLHFPAEVREVIQEICLKTGIELANDYFGISAMRYHVEQVPEGKKLSFRDMLSAMTQMIGMSCFFNREGKMEIRDLTESNITINADSYFLHGLTKSEIEYQIAGITCKTDKKPLTVGMKTGRSLELDNVFMTQSALNDLYYKLKNLTYYPYNLNYQGHLLLEVGQWVTIQTNKKETFKVPVLSQSFTFKGGLRGRISADSKAGNDTQYSYEGTITKQIKQQDGIEAKIQAQIEAADKDFDQKVDKIKKDFNDQVELAKAKAEE	common_virus_hmm	common_virus	C0	18745.0	0	18745	GCA_019456735.1|JACVSV010000037.1@region_1_18745@tool_cenote_CDS_0030	.	unmatched_CDS	none	0	0	.
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	1	108	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	2	109	GCA_019456735_1_32_1	GCA_019456735_1_32_1	+	19598	.	.	hypothetical protein	VDPIVEETERWSWLHELVEKYNEELEDDGRFKAKS*	.	hypothetical_protein	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0001	shell	ambiguous	low	28	0.259	GCA_019456735.1_01284
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	80	397	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	81	398	GCA_019456735_1_32_2	GCA_019456735_1_32_2	+	19598	.	.	hypothetical protein	MMEDLKQKVNEVYNWTVEDGKPQPPKQDLPQAVKDRADYFWEMAEDGMTFMGAMECIFADEKPTDYDLGATKGWLPKSKEFDDWIGYSPGMSQVVIAVYLIYGGN*	.	hypothetical_protein	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0002	shell	direct	high	317	0.997	GCA_019456735.1_01284
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	399	884	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	400	885	GCA_019456735_1_32_3	GCA_019456735_1_32_3	+	19598	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNIKALIKKYEAVECVVGIVSGKTILKTVLRDLKQLDEQKSVKVPQFVAEWIEEARKACKDVAELFEFDFTNDEVRKWFMQERPFDLVARAWLDGYEVEEEKRYIVSLNNGQPLTKTQSGKVLYFNQNIITGNYKFTRKELEEAGFGWVFDCPGIEIEEVE*	mmseqs_cdd	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0003	shell	direct	high	485	0.998	GCA_019456735.1_01285
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	884	1135	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	885	1136	GCA_019456735_1_32_4	GCA_019456735_1_32_4	+	19598	.	.	hypothetical protein	MIQTLEEGMKNQSKRIKIPMEIRPFDVGYRIVNKHGQALALKNGASIFALPSLAEKAIKKKFSKDDPDFDIENISLKRSLLSI*	.	hypothetical_protein	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0004	shell	direct	high	251	0.996	GCA_019456735.1_01286
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	1170	1646	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	1171	1647	GCA_019456735_1_32_5	GCA_019456735_1_32_5	+	19598	.	pfam08241	Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	MGDIRILDACCGSRMFWFDKNESHTTFMDIRQEKFEIHGKKVNVNPDVVGDFRDMPFDDETFNLVVFDPPHLKWAGQNSIMRSQYGELDKVTWPEDLAKGFEECMRVLKVGGTLVFKWSDCQINVKEVLKSVPFKPLFGQQRGTTHWMTFMKFEEVTD*	mmseqs_cdd	nonviral_gene	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0005	shell	direct	high	476	0.998	GCA_019456735.1_01287
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	1643	1903	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	1644	1904	GCA_019456735_1_32_6	GCA_019456735_1_32_6	+	19598	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILVSAGLNIWQMDRIAELEKKKPMVIYKADNAGAEIFGKVVEKGRHGKLYTLTIRDYGVFVVTKDVYEKVKVGDEVML*	mmseqs_cdd	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0006	persistent	direct	high	260	0.996	GCA_019456735.1_01288
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	1900	2307	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	1901	2308	GCA_019456735_1_32_7	GCA_019456735_1_32_7	+	19598	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MIPKFRAWDRLRKEMNYKVMVGNCDLSDENWTCPIIWIEEKKDWLHFDDYECIMQSTGLKDKNGKEIFEGDVLEIQDEGEVLGNAKLTWDNEQAVFMIEAISVDDIAPFHEILSDESYSYRVVGNIYENKELLDA*	mmseqs_cdd	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0007	shell	direct	high	407	0.998	GCA_019456735.1_01289
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	2300	2479	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	2301	2480	GCA_019456735_1_32_8	GCA_019456735_1_32_8	+	19598	.	.	hypothetical protein	MPDVEWIMENCHMMRDNGIWAGEKQISYASPDGQYTYYVNKRKDGTYYLHGAYKHYGRT*	.	hypothetical_protein	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0008	shell	direct	high	179	0.994	GCA_019456735.1_01290
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	2466	2978	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	2467	2979	GCA_019456735_1_32_9	GCA_019456735_1_32_9	+	19598	.	PFAM:PF13921.5	transcriptional-regulator,-D5-like	MAGRRWTEDEVDYILLAHNDNESTVEEVADFLGRTVSSVRCKSEIINKGKGQFTKRHWQDEEIRILRRYYQKVQDLNQLAKILNRSLDAVIIKANRLGLPRRKKKWDISKYDIETLGKMGMSCRQIACQLDRPLRLIRAVVYHYKIPVGKEEIQQHPWSFDNDMIFMRRT*	phrogs_hmm	hypothetical_protein	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0009	shell	direct	high	512	0.998	GCA_019456735.1_01291
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	2980	3093	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	2981	3094	GCA_019456735_1_32_10	GCA_019456735_1_32_10	+	19598	.	PFAM:PF11753.7	kinase	MTDNINKPSHYQGANGLEDLKKARKNLDWLIEEMEHE*	phrogs_hmm	hypothetical_protein	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0010	shell	direct	high	113	0.991	GCA_019456735.1_01292
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	3086	3265	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	3087	3266	GCA_019456735_1_32_11	GCA_019456735_1_32_11	+	19598	.	PFAM:PF04936.11	host-nuclease-inhibitor	MNEYALYQGETFVTIGTLEEISKETGIAERMLKYYTFASTQKRHPNGRAVIKIEVDDEG*	phrogs_hmm	hypothetical_protein	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0011	shell	direct	high	179	0.994	GCA_019456735.1_01293
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	3255	3485	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	3256	3486	GCA_019456735_1_32_12	GCA_019456735_1_32_12	+	19598	.	PDB:2FJR_A	Repressor-protein-CI	MKDKLNPRQASRFAFLLNQKRKERKLSQEKLAAKLGYSRYLIAKWEKEESVPNIYNVEDICTYFAFPADIILGSRA*	common_virus_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0012	shell	direct	high	230	0.996	GCA_019456735.1_01294
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	3556	3984	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	3557	3985	GCA_019456735_1_32_13	GCA_019456735_1_32_13	+	19598	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQIELLDIIDEKKTRKEAIKVLKKYSRLRRIAGEEYAPKITISYSLEPKSSSGQTSKQVESMVLRRVSAQQDLELIAKAINNLSDMEYTRILIERYCRKKRREDYSIYSELGYSSSEYYRILNKALLEFAESYQASNLLVYK*	mmseqs_cdd	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0013	persistent	direct	high	428	0.998	GCA_019456735.1_01295
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	4262	4804	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	4263	4805	GCA_019456735_1_32_14	GCA_019456735_1_32_14	+	19598	.	CDD:cd01192	site-specific-tyrosine-recombinase	MNIVEPIRDKDDIQAMKDYLREWNERNYILFLFGINSGLRVGDILKIRVKDVQGWYIKLKEQKTGKKKKIKMTKTLKREVREYIQNKPHHHFLFQSRVGKNKPLDRRTVDWILKVAASECGIENIGTHSMRKTFGYHYYKKTKDIAMLMSLFNHSSPAITLRYIGIRQDQQDKAMSNFGL*	common_virus_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0014	shell	direct	high	542	0.998	GCA_019456735.1_01296
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	5018	5314	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	5019	5315	GCA_019456735_1_32_15	GCA_019456735_1_32_15	+	19598	.	PDB:5H0M_A	HNH-endonuclease	MIEVSTREERNQFYNSSEWRTIRRQALKRDHYECVWCRDEGKVTTTNLEVDHIKELEFYPEFALDIDNLRTLCKACHNKRHDRFDKNDRNFRKDEWWG*	common_virus_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0015	.	unmatched_CDS	none	0	0	.
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	5432	5770	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	5433	5771	GCA_019456735_1_32_16	GCA_019456735_1_32_16	+	19598	.	PFAM:PF05119.11	Small-Terminase	MEEYSEKNIKELENQLLSKIGYFSPRKKDAIQYEKVNRYLYLVRLLYELKAKLHEDGLVITVHNGQQRFQKANSLIKEINTTSNQLLAIERSFDFDVENSPVEKATSGSDLL*	hallmark_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0016	shell	direct	high	338	0.997	GCA_019456735.1_01297
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	5767	7407	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	5768	7408	GCA_019456735_1_32_17	GCA_019456735_1_32_17	+	19598	.	PFAM:PF03354.14	Large-Terminase	MISHPLVDDYIKMAENGEVVVNKERKLLFKIIKEKIYPRDDLYFDNDLIDKFIRFAEKNFFPLAKYQLFLTPFIFLFRKVDEEPHLDEYLYTLARGGGKNGFMSARSSFFISPIYPIRDYDVTITANSEKQGKVSFEEVYETIQRRGLEDHFYLTKMSITGRANNSVFSFRTNNPKTMDSARDGCLEFDEIHQFENDKAVKVQRSGLGKIAHVRTFYNGTNGYVREGFYDKLIEKSMQILNGEVDDFRLFPFICKLDSADEVDDMKNWPKANPMLDESTPYAKRLLARTKADYDDLELEPSGRQEFMTKRMNLPEADLEKDVTTRERLLACLRSPGIDLLGKSCVAGFDYASIRDFASVGLLFKNGDEFIWKQHSFARKAFLKAFKLKAPIQEWADRGLFTIVDGPSIDPRLLVEKLNEWSKFYQIELVCADGFRMDLLKPLLEEAGFEYEFLRNPGAIQSKVAPIIEDGFANERFVFENDNSMIWYTDNTYVKEDKDGNKRFLKKEPVRRKTDGFHALIAALYKRELVHESNVGEFLDMLEDWEF*	hallmark_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0017	shell	direct	high	1640	0.999	GCA_019456735.1_01298
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	7463	8611	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	7464	8612	GCA_019456735_1_32_18	GCA_019456735_1_32_18	+	19598	.	PFAM:PF04860.11	Portal-protein	MGFLNLFKRDAPDVGFDFEELERMLGCLQLKSLAIDKSAEFVARIFAKSEFRYMVENHHVTSDWDYILNVRPNKNESASEFWQKVIYRLLTKNEVLIVLSDDKQLLVADAFTRRRYALYDDTFEMVSVGDYTFQRKFAMSDVIFLQYNNNRLQEYVSDLFSDYEKLHTRLVEALARNNQIRGVLATKANGTFDEDKRKKLQRYADNLFKSFTSKTVAIVPTMDGVEYSELTNTVGTTNLSVEELKKLRRQFDDEVADILGLPTALMHGDMADLSNSQKMFNSYCYESLVKKVGDALNHAMVSSAGYANQKKFVIFGEGGLDKFALAENIDKLISSGAMTRNEVRLELGLEAVPGGDSFLITKNYQGENEIEKGGNEDDNHSD*	hallmark_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0018	shell	direct	high	1148	0.999	GCA_019456735.1_01299
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	8592	9314	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	8593	9315	GCA_019456735_1_32_19	GCA_019456735_1_32_19	+	19598	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MTIIQIKGAIVSNDDRWFYDWIDMDATAPKDIVLPTTGEDVEVHINSGGGDVFAGSEIYTALRAYQGHVTVKIVGIAASAASVIAMAGDQVEISPTAQIMIHNVSAGVRGDHKALLHEAGVLEGFNKSIAYAYIDKTGKALDDLLDLMEGETWFDARSAVNHGFADKVMFESQEAPVLVASQTPVIPRDFIEKIRSAMTPDVELLADLVRDRLNNSLPIPEDKKKEDKTAEPVGLGRFPF*	common_virus_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0019	shell	direct	high	722	0.999	GCA_019456735.1_01300
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	9333	10448	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	9334	10449	GCA_019456735_1_32_20	GCA_019456735_1_32_20	+	19598	.	PFAM:PF06673.10	Major-Capsid-protein	MMKLGNEFTTARQNFMNAVETGAPMEEQNKLYNEMIEALTDKLQDDAREAARKEIATMNPYDAHLTAEAREFFNNIEKLPPKGIEKLFPQETIDRIFEDMVAARPLLQHIGLRNAGIRLKFLKSSRTGQAVWGKINAEIQGQLKQEFAEEEAIQSKLTAFVVIPKDSEKFGPAWLQSYVSIQITEAFAAALEAGYLNGDGDNKPIGLSRTLTGTAESEKVTYAEKQAQKKPLTFADSATVVKELTEVYKYHSTKADNTTPVAVEGNLVMVVNPVDAWDVKKQYTSLNAQGVYVTAMPYNLILVESVAQASGKVTTFVKGRYDAFVGGGIEFGRFTETYALEDLNLYTAKQFAYGKAHDEKTAAVWTLSIAK*	hallmark_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0020	shell	direct	high	1115	0.999	GCA_019456735.1_01301
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	10462	10752	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	10463	10753	GCA_019456735_1_32_21	GCA_019456735_1_32_21	+	19598	.	CDD:cd08054	Head-Tail-Connector-Protein	MEIEAKLHSLLIPFKERMRIFHSGEDANLSRMLESSQMVITRLVGSGNIHDHQIRELILERARYVYNDQVEFFYENFKADILALSLDKIEMEDSDD*	hallmark_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0021	shell	direct	high	290	0.997	GCA_019456735.1_01302
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	10745	10933	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	10746	10934	GCA_019456735_1_32_22	GCA_019456735_1_32_22	+	19598	.	.	hypothetical protein	MIKVLKEFYDLKEGVLRQVGERFEATEERFAELKEHLPDYVELEKSSRSRSSKEVVSVNEEE*	.	hypothetical_protein	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0022	shell	direct	high	188	0.995	GCA_019456735.1_01303
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	10920	11309	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	10921	11310	GCA_019456735_1_32_23	GCA_019456735_1_32_23	+	19598	.	PDB:2KZ4_A	head-closure-knob	MKRSEGPSYRYKKPESQNGDLRTPLTFYTSKIKKGVDGRDVSYEKAFYTMGQTYSPSMKDVEIATGKAMKAKMTLKIRDPLTDYQPENRHFVEVGDIRLVGKKWQIIDVRPDFANRDFLIVLIGGGRDV*	hallmark_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0023	shell	direct	high	389	0.997	GCA_019456735.1_01304
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	11302	11700	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	11303	11701	GCA_019456735_1_32_24	GCA_019456735_1_32_24	+	19598	.	PFAM:PF04883.11	tail-component	MSSGANLKGFDDILRNIEARLGEPVVRRKVNRALKETVEEFEPTFKRAMAVYADTGKTVGAVVHGNVTGTSSGVPMVKLGFKSPRWTLIHLNEFGYAKNGHPRGFGVMRRFFEASKPVFKSKVGMKLKQEFL*	hallmark_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0024	shell	direct	high	398	0.997	GCA_019456735.1_01305
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	11700	12080	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	11701	12081	GCA_019456735_1_32_25	GCA_019456735_1_32_25	+	19598	.	PFAM:PF05657.10	tail-component	MIKDKLTELYDALEEDESLSGISIKSFERPESLGDGETSIVIIPVGPPMQTAHGSNTSLAKTFLYQINVESTNRVECKELQGRIEKIMEEQGFYQTEGGLEQWIPDIKRYVDVRTYRGMSALYEKY*	hallmark_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0025	shell	direct	high	380	0.997	GCA_019456735.1_01306
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	12097	12693	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	12098	12694	GCA_019456735_1_32_26	GCA_019456735_1_32_26	+	19598	.	PFAM:PF04630.11	major-tail-protein	MTVKGTALIGLKSVTIRVHDGQTPTVGQNLFTLEGKDNEGATQTARVTGLSSDPVKTYGSNVAYHVSNRGVGDVKVEMGLLDVPLALYTNALGYGDDDGIYYFGADTVAKNVSILIESNTADGEPVYYGFYKGQLSMDAIDFETLKDKANELATTSVNFTATASSDVATKGRYGAIVYGSDAEKLKKLKGQLNITAAG*	hallmark_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0026	shell	direct	high	596	0.998	GCA_019456735.1_01307
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	12739	13032	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	12740	13033	GCA_019456735_1_32_27	GCA_019456735_1_32_27	+	19598	.	.	hypothetical protein	MAKVQFTIKNDKGEDVLKKSKEITTRDYRDYLVMNESLTSDLSEVEKLDKQLGFIASLFDDVTVEQLLEYTDFAKVISIFTAIYAHLVGDVDPKEKS*	.	hypothetical_protein	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0027	shell	direct	high	293	0.997	GCA_019456735.1_01308
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	13281	13511	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	13282	13512	GCA_019456735_1_32_28	GCA_019456735_1_32_28	+	19598	.	.	hypothetical protein	MSRKEKACRRYWFWFTIFILYLAFGLYCICTNFVDIFGMLLLSPFIFASLPLYAYLFLGMFIWAFMNMAMDDFYKE*	.	hypothetical_protein	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0028	shell	direct	high	230	0.996	GCA_019456735.1_01310
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	13568	17743	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	13569	17744	GCA_019456735_1_32_29	GCA_019456735_1_32_29	+	19598	.	PFAM:PF10145.8	minor-tail-protein	MASGTPLGQMYIELGLDVSKFSPTLTGAKNAVKYFQNNVRSLDSTLKGNEKNASLLQAKYKTLGQAIDSQRKVLDEMKKSFDKLEPGTAKFDKAAADIQRENAKLAVMEGQLRGVEKALQDVGRENSWSGKMDTLSENFAKGGEKLRAMGDAMKPVSAALLAGFTLSTKKAIDFESQMNTTKSLLADTIPTADELNSTTQKLGESSKNWAKQYGISTASINEGMQEIIKKGFDANQTIEAMPAILDAAKASGEDFNTVMNATTNILQQFGLSTQDTERVTNSLTFVANKTAAGFADMGAAMEYVGPVAKNVGMNLEETAAAVGLLSNNGIAGEKAGTALRGALTRLLKPSEQNANAMEKLGFSAEEFRSGAIKLPDILDRIKKNTEGMTDAQKSALIATAFGTEAQTAMNILVDQGGDALRNLANETKGATTYTKDLANELSKSSKNGVERFKSSLEVLQINIGQKLLPLLTPVIDKVNQFIDWLSKAPPAVQSLAVGIGGFLALGYPFLNFLGNGATALSILIKHAGKLEGLLKGGLGLAKLTERAGKLKGLLQGGLGLAKVGSEATVLAEGAGAAASSSSLLSGAIGALTNPIGLLVGGAALLAGGLVYLGHKKDEARIKAEEFGSQLSDTARKELRDFQSKVDDTSTAVANFGTHAGDAEKVSEAFRKLHEEVAAGAEKANQRMEELAKKLGFSDEEIAKMKVKNDQVVSNTDAMANQVSEIYKRHNGDASKFSQEEKEIVLNNQREMIKARIEMMELSGEQQKAALQALNGEIGSLNETQLKHTRDVLKKALDEENQLYKTSKDGLKQLLDAKRIDQETYNKKIQELETNHQQTMEALGTKYYQVMQNLDAKVKARTGQSWNYWEEAKKVLEEYGLSYEVIGQKAAEASQKMGDSHSILAKYTSDMSKETREANDAWSLLVGNIDENNNFVIKSNVKEVIGEATKSAEGWEQLQFIVKNANINSNARVTIAEALVESGKWSTMTLEEKQLIVQNQAGLQAIFDSENHLRIWNSMPAEVKQLLLENTDVMNKAEEASKALYNYDALTPKQKELLATDENFRKAVARSTDTLTTWNAITPFTKDLKLDPTNVLNNGQLSIDKIMAWNLSNPENKSLNAIDNTSEAVASAKASVNSPKQEKPIDLLAKDQTAGVRNETSAAINAIKQHNPVDILAKNSTSSTVSEVKSVVNSIQDKTVTISARDNASGVLAGIRSWITRVTGDFFTNVFASRHAHGTNYHPGGLAMVNDQRNSTYKELVTLPDGRSFIPEGRDVLLPLPKGAKVLRADKTKRLMREMGVPKYAAGVGIPSDAKFLREMEEAQAKIVVQTKGDTNSKDSDKVVSEIAILRASMEKILTAILEKPSDTYLDADKISMSVYQRQGAIYAREGM*	hallmark_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0029	shell	direct	high	4175	1.0	GCA_019456735.1_01311
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	17743	18441	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	17744	18442	GCA_019456735_1_32_30	GCA_019456735_1_32_30	+	19598	.	PDB:2X8K_A	Distal-Tail-Protein	MFYMIINGFNTSTIPHCVVTDFGQVEAAKPRVVEDANLYGANGSYRVLDGGYESYERTFSFYIPKLLDVSTIVEKFQPKDNVLEFSYQLGSVFYADFIGATYSPHGMHAWKLELKLSMQPFRYQKNLAPLIFTASGNVNNPGSVYSEPVIEIEGDGDISLTIGRTTMHLTVRRKVTIDCRHKKQNIYNADGAVQNTLRKRGGFFELAVGSNGLVFTGTVRKVTVRPNWRYIL*	hallmark_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0030	persistent	direct	high	698	0.999	GCA_019456735.1_01312
GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote	cenote	CDS	18438	19595	GCA_019456735.1	JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735.1_JACVSV010000039.1	GCA_019456735.1|JACVSV010000039.1	GCA_019456735_1_32	GCA_019456735_1_32@C0	18439	19596	GCA_019456735_1_32_31	GCA_019456735_1_32_31	+	19598	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTEGNRPLNESYNDEIVHLGNNTYQLTFRFPTSNPKWELLKEETFLTADDLHGEQDFYIFEVEKQQGYIQVYANQVISLLNNYIVSSIEVDRVSGTRVLSAFAGSITRANPFSFFSDIDDRHTLNIKDKNAMEVLAKDKHSILGQWGGDMVRNGYNLRLLKNGGSENESLFMYKKNLSSYQHKTSMKSLKTRITFKTTVKGEGENAVDHDYMVVIDSPLLGNYSQIYEDVVEVNDQDVTDEASLIAYGKQYFRTSMCDMLEDNLEISVVGQSDVAVQMFDVVSIYHEWYGLDVRKKITKYTYSPMAKRLKSIGFGTFQSSLANAIGGIVNDAVLNESRNLHQIFEERLKKEIANADRAFDAEFDKREKAITDAIELAKAKAEE	hallmark_hmm	common_virus	C0	19599.0	0	19599	GCA_019456735.1|JACVSV010000039.1@region_1_19599@tool_cenote_CDS_0031	persistent	ambiguous	low	5	0.004	GCA_019456735.1_01312
GCA_019456735.1|JACVSV010000073.1@region_1_3456@tool_cenote	cenote	CDS	147	383	GCA_019456735.1	JACVSV010000073.1	GCA_019456735.1|JACVSV010000073.1	GCA_019456735.1_JACVSV010000073.1	GCA_019456735.1|JACVSV010000073.1	GCA_019456735_1_70	GCA_019456735_1_70	148	384	GCA_019456735_1_70_1	GCA_019456735_1_70_1	+	3456	.	PFAM:PF04014.17	transcriptional-regulator	MVVKTRKQGNSITITIPSEFNIPSGVKYEAKLLPSGEIIFTPEELGQQVSYVSDDAFDLNLDKIFDEYDDVFKALVEK*	phrogs_hmm	hypothetical_protein	NaN	.	0	3456	GCA_019456735.1|JACVSV010000073.1@region_1_3456@tool_cenote_CDS_0001	shell	direct	high	236	0.996	GCA_019456735.1_01919
GCA_019456735.1|JACVSV010000073.1@region_1_3456@tool_cenote	cenote	CDS	380	793	GCA_019456735.1	JACVSV010000073.1	GCA_019456735.1|JACVSV010000073.1	GCA_019456735.1_JACVSV010000073.1	GCA_019456735.1|JACVSV010000073.1	GCA_019456735_1_70	GCA_019456735_1_70	381	794	GCA_019456735_1_70_2	GCA_019456735_1_70_2	+	3456	.	PFAM:PF10717.8	envelope-component-protein	MTIYLTEKQIEKINALAIQRYSPNEKIQTVSSSALNMIVNLPEQFVFGKYLYPTIFDKATILFVQLIKKHVFANANKRTAFFVLVKFLQLNGYRFSVTVEEAVKMCVTIAVEALTDEKMTSYSKWVSEHSVREKVKK*	hallmark_hmm	common_virus	NaN	.	0	3456	GCA_019456735.1|JACVSV010000073.1@region_1_3456@tool_cenote_CDS_0002	shell	direct	high	413	0.998	GCA_019456735.1_01920
GCA_019456735.1|JACVSV010000073.1@region_1_3456@tool_cenote	cenote	CDS	911	1876	GCA_019456735.1	JACVSV010000073.1	GCA_019456735.1|JACVSV010000073.1	GCA_019456735.1_JACVSV010000073.1	GCA_019456735.1|JACVSV010000073.1	GCA_019456735_1_70	GCA_019456735_1_70	912	1877	GCA_019456735_1_70_3	GCA_019456735_1_70_3	+	3456	.	PDB:1A0P_A	Recombinase-XerD	MESKVTIIMQEMLPLLNNEQLLALRESLEHHLVDGKKQQKYSNNNLLKLFITAKQVEGCSSKTIRYYQRTIENLFNGIKESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEIMRDNCENLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPVYFDARTKIHLRNYLNDRKDSHPALFVTLVGKVQRLGIAGVEIRLRKLGDKLGIQKVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQKFIS*	common_virus_hmm	common_virus	NaN	.	0	3456	GCA_019456735.1|JACVSV010000073.1@region_1_3456@tool_cenote_CDS_0003	shell	direct	high	965	0.999	GCA_019456735.1_01921
GCA_019456735.1|JACVSV010000073.1@region_1_3456@tool_cenote	cenote	CDS	1910	2410	GCA_019456735.1	JACVSV010000073.1	GCA_019456735.1|JACVSV010000073.1	GCA_019456735.1_JACVSV010000073.1	GCA_019456735.1|JACVSV010000073.1	GCA_019456735_1_70	GCA_019456735_1_70	1911	2411	GCA_019456735_1_70_4	GCA_019456735_1_70_4	+	3456	.	PDB:2AR0_B	Type-I-restriction-enzyme	MKKVKLGELVSIQTGKLDANAAVVGGKYPFFTTAKEILWINDYVYDDEVVLVAGNGDLNVKYYKGKFNAYQRTYILSNNSNVKMKYLYYFLDKYIEILRYQSIGGVIKYIKFNNLSNALVPMMSVSEQENIIQNFEKIDYLISKRSQQYTELSNLVKSRYSEEVVA*	common_virus_hmm	common_virus	NaN	.	0	3456	GCA_019456735.1|JACVSV010000073.1@region_1_3456@tool_cenote_CDS_0004	shell	direct	high	500	0.998	GCA_019456735.1_01922
GCA_019456735.1|JACVSV010000073.1@region_1_3456@tool_cenote	cenote	CDS	2407	3453	GCA_019456735.1	JACVSV010000073.1	GCA_019456735.1|JACVSV010000073.1	GCA_019456735.1_JACVSV010000073.1	GCA_019456735.1|JACVSV010000073.1	GCA_019456735_1_70	GCA_019456735_1_70	2408	3454	GCA_019456735_1_70_5	GCA_019456735_1_70_5	+	3456	.	cd17254	Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.FclI TRD1-CR1. The recognition sequence of Flavobacterium columnare G4 S subunit (S.FclI) is undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It also contains TRD-CR-like sequence-recognition domains of type I DNA methyltransferases, such as putative Type I N6-adenine DNA methyltransferases from Microbacterium ketosireducens (M.Msp12510ORF408P) and Treponema primitia ZAS-2 (M.TprZAS2ORF3630P). It may also include various type II restriction enzymes and methyltransferases.	MKKVKLGEVATFINGYAFKPQDWSSEGKEIIRIQNLTKTSTEINYYSGTIDQKYIVEAGDILISWSGTLGVFQWCGKSAVLNQHIFKVVFDKIEIDKSYFKYVVEKGLQDAVKHTHGSTMKHLTKKYFDNIMVPYTNLGEQQRIASELDLLSKLILRRQEQLEELNLLVKSRFNEMFGENKIFEIIDNLFDIIDGDRGKNYPKSDELFSEEYCLFLNTKNVTKNGFSFDTKQFITKTKDKLLRKGKLERYDIVLTTRGTVGNVAYYDELIKYKHLRINSGMVILRPKTPNLNQKFIIHVLRNNNYSRVISGSAQPQLPITKLKKILLPLPPLALQNEFADFVALVDKSQ	mmseqs_cdd	nonviral_gene	NaN	.	0	3456	GCA_019456735.1|JACVSV010000073.1@region_1_3456@tool_cenote_CDS_0005	shell	ambiguous	low	5	0.005	GCA_019456735.1_01922
GCA_019456735.1|JACVSV010000083.1@region_1_2976@tool_cenote	cenote	CDS	1	2975	GCA_019456735.1	JACVSV010000083.1	GCA_019456735.1|JACVSV010000083.1	GCA_019456735.1_JACVSV010000083.1	GCA_019456735.1|JACVSV010000083.1	GCA_019456735_1_81	GCA_019456735_1_81	1	2976	GCA_019456735_1_81_1	GCA_019456735_1_81_1	-	2976	.	PDB:3GUD_A	Neck-appendage-protein	ELAKAKAEEVKQEVSDTINQRFNSFHDEPLRESRRKAEEALRQAGASSSLAQEAKRIGLDSVARLEAFKSQTRSAQTALSGDLNLLKQTVTNDISSKQRQLKTDISKQVQALGQIKNDLAGVRSSQARYEETTKGRLTALTNRMEGKANKSEVRQTAETLTSQIDRIQEESSTRISTMTSRFNQRADALDAGVRRLTEGLRTKADISSLNVTAENIRQSVRRLERDTQSQLNQKLSTAEFEVQAGSIRQEILNATKDKADKTLVVTEAGKLREEFSNMQVGGRNYYRDSEKIQQSRFGFVFDNLDPYLSKSDIGTTWTLSFDFKLDEVDGSFPFHMSHGGANGFGIEGKKEFTATREWQRFRLTGPVFFKEDAPSESKLQMTLFNSDLGYGGPIFIRRIKLEKGTLATDWSPALEDTNGLITQAKASFERTAQELRTDLSAVQAYVTQDGQRQESLQRYTREESARQARAVREQISRDYVGKSSYQEDVEGIHRRIEGVKTSANREITSQIASYRQSADGTFRDISSQITTYKQDMTRNIANLSHQLAGKVETTDFQRVKETSELYERILGNTENGIADKVARMAMTNQLFQVEVGKYSVSGPNLIKNSDFKNGTNKWGSTQNLGRLVKHSFYHNGQKDLMRLSNATKNKNFLSSHRFNLERNTDYVLNFRGFNNSALASYDVYILGRRAGESDGFTIFKKVVSSKKLSTSRCEDVSVTFNSGEMDNAYIRFENNGSSSGTADLYITEVDLYKGYKPRTWQPHPEDAVADANKKLEATQTKMTQLAGSWLVQNINSAGDLISGINLGANGHNRLSGKLTHITGETLIDRAVIKSAMVDKLKTANFESGSVTTAVLAAEAVTADKVKFDHAFIRKLIANDAFIGELTSKRIFATKIESVVNRSTFLEAYQGQIGGFTIGRFAQGRGRWISGVNQFSVGMGNGEGGSYNGENTAFWANWGYNWNSPGPNAWYVTTLGNMHCRNGANFHGRVDFS	hallmark_hmm	common_virus	NaN	.	0	2976	GCA_019456735.1|JACVSV010000083.1@region_1_2976@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.