core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	99	1244	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	100	1245	GCA_019456835_1_21_1	GCA_019456835_1_21_1	-	28578	.	PDB:1XO0_A	Recombinase	MIKKYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKAAERDLLLDVEENGFSNNEDFQNPTFAEVAELWLDSYKSTVKPTTYQNVKKKLRIIIDSYFTDMKIQQISVAYCQKVAIQLSNRYILYANYYSVISRIFKYAVSLDIIKLNPLDKIIKPKNRPLKGKENHYTKQELTEFLKVYKANCKPVDYTFFHLLAFSGLRTGEAIGLMWSDVDFENKLLSISRTAVVIGKKQTVQDPKTKRSKRVITLDDETLNVLKLWKRQQIKEYFQAGVPYKRESNYIFTNSFGGWISPSAVKERLRRFFCEHKDVKKITPHGFRHTHASLLFEAGITAKIISDRLGHNNVQTTLDMYTHINDNQRFEVVDQLMDFIRSS*	common_virus_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0001	persistent	direct	high	1145	0.999	GCA_019456835.1_00689
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	1770	2558	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	1771	2559	GCA_019456835_1_21_2	GCA_019456835_1_21_2	-	28578	.	PF08861.10	Domain of unknown function DUF1828	MNNSNTLKNIYFDWLLKEYKFNDLEKNIVEIRTPFLDNDFDHIILYAEFLSDGRVTLTDDGWTINNLKSHGVSFSNRSTYKNNLLNTIVNNLGTRAENGELFITTSLEKFPLAKQRLLQTIMQVNDMIVLRDTTIKNVFHDEIENTLVQREVLFTRRPSYSGKEGITVQFDFAIPTIKKERLVRTISNGNDLNRAKLLAMDTRILQNHKDNVEYIAVVDDIHHRFDKVAETQAVFNENSKDKIILLSHKDILENSLLLSNVI*	hhsuite_tools	nonviral_gene	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0002	shell	direct	high	788	0.999	GCA_019456835.1_00690
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	2551	3015	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	2552	3016	GCA_019456835_1_21_3	GCA_019456835_1_21_3	-	28578	.	.	hypothetical protein	MNYNDLNDQQVQELINKLKYPKNELSFNEIHTTISSLFGKIDIDEAIIDDDDIQYILHIYRGRMNPERYSIHIRFKNSHNHLVRVDINPSNRHVNPDDSIVEGNHIHIYSNHYDKKDRVAIPLEDSDFPNLTHIVDVFSEFIKYTHIKTEADDE*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0003	shell	direct	high	464	0.998	GCA_019456835.1_00691
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	3023	3790	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	3024	3791	GCA_019456835_1_21_4	GCA_019456835_1_21_4	-	28578	.	PDB:2FJR_A	Repressor-protein-CI	MNILGNSIKEIRKSKKMTQNELSQLTGFKQNTISNHENGKRQLDETDIRIYAAALEVEPQQLFSLSKVTTPTASPDLLTQQINDKLVQLTPDNKKIVLRTSEELLKEQKNEEETKINEVSEVISLYQVEVVSETAAASGFNYGFGYDDTDRETIEVDEQPPRHDIATKVSGDSMQPDYQDGDILYLVDKGLTTYNGDLAVIAYGDRSYFKKIYTENGRLRLVSLNDKYEDIILDFPPAEDTHIKIYAVIGVYRGE*	common_virus_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0004	shell	direct	high	767	0.999	GCA_019456835.1_00692
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	4242	4475	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	4243	4476	GCA_019456835_1_21_5	GCA_019456835_1_21_5	+	28578	.	PFAM:PF13744.5	transcriptional-repressor	MLTNKEKIRSQFLLPKIRLREERRKRELTTLYMADLIGLKNRRQYELKEKGQFPFQDYEMAIIANKFGMSETDLFFS*	phrogs_hmm	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0005	shell	direct	high	233	0.996	GCA_019456835.1_00693
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	4614	4799	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	4615	4800	GCA_019456835_1_21_6	GCA_019456835_1_21_6	+	28578	.	PFAM:PF13744.5	transcriptional-repressor	MYGAKMRELRTAQKLGLRELAKRTLIDYTTLSRIENDLKAVTLSQAVVIAKALGCRVEDML*	phrogs_hmm	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0006	persistent	direct	moderate	170	0.914	GCA_019456835.1_00694
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	4811	5008	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	4812	5009	GCA_019456835_1_21_7	GCA_019456835_1_21_7	+	28578	.	.	hypothetical protein	MNNAAQKVTRIDKDAWEIATELANEYGVSICHIISESVRYCAENAEFKEMDVVVKRLVVGSKVLE*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0007	persistent	direct	high	197	0.995	GCA_019456835.1_00695
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	5097	5249	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	5098	5250	GCA_019456835_1_21_8	GCA_019456835_1_21_8	+	28578	.	.	hypothetical protein	MANKGFKNSYIDRKKLSSSLKTLMTQQAIERAELAESQRKELEEFLKDLL*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0008	shell	direct	high	152	0.993	GCA_019456835.1_00696
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	5344	6057	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	5345	6058	GCA_019456835_1_21_9	GCA_019456835_1_21_9	+	28578	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNEIFNFHGQEVRTLTIDDEPWFVGKDVADILGYAKPLDAISRHVDEDDSVKYGLTDNLGRTQNTIIINESGLYSLILSSKLPQAKEFKRWVTSEVLPAIRKQGGFIREDLDEDAFIALFTGQKKLREQQTTMLEDIDYLKSEQPIHPSYAQSLLKKRKARVVACLGGIDSPAYADKIFAQSVFRQAEIDFKDHFNISRYDLLPKKHADAALAYWMTWEPSTNTKMKIMELNAFSQA*	common_virus_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0009	shell	direct	high	713	0.999	GCA_019456835.1_00697
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	6071	6313	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	6072	6314	GCA_019456835_1_21_10	GCA_019456835_1_21_10	+	28578	.	.	hypothetical protein	MRPRRYPYSGKRKKQSDRQIAKLKRDIDVNRTNISSLKFVIETLSNHQIAKLKRDIDVNRTNISSLKFVIETLSNHQNYR*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0010	shell	direct	high	242	0.996	GCA_019456835.1_00698
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	6276	6500	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	6277	6501	GCA_019456835_1_21_11	GCA_019456835_1_21_11	-	28578	.	.	hypothetical protein	MSKLSHKPNHVVKKLTWENLDNILLSNFSESTTDKPSAVIQLSDFEMSKTEIIEEATAQGYQVIDNSDGYLKFL*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0011	shell	direct	high	224	0.996	GCA_019456835.1_00699
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	6617	6760	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	6618	6761	GCA_019456835_1_21_12	GCA_019456835_1_21_12	+	28578	.	.	hypothetical protein	MEDKIIELADYFISESTTYREAKIACEKLFRQVSHEIELRALESKTV*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0012	persistent	direct	high	143	0.993	GCA_019456835.1_00700
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	6865	7155	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	6866	7156	GCA_019456835_1_21_13	GCA_019456835_1_21_13	+	28578	.	.	hypothetical protein	MEGITLQLRLDGESAELFTNQLLAFAEKQVKEQLENDRMPINQQALMEKFGFTHSYIKKLERKGLRFRKQGKYIMYDINDVYEILELEKEVRKLRA*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0013	persistent	direct	high	290	0.997	GCA_019456835.1_00701
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	7168	7488	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	7169	7489	GCA_019456835_1_21_14	GCA_019456835_1_21_14	+	28578	.	.	hypothetical protein	MFEPPILDQLMGVGALLIGFAGAYRHIKLQEERKEKERREEQEFASMITQGYNQAYERGREDKWQEIRKNIRREFKGFTYDNEPPVGLRPEPLALPEPKQSAIRLL*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0014	shell	direct	high	320	0.997	GCA_019456835.1_00702
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	7504	7800	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	7505	7801	GCA_019456835_1_21_15	GCA_019456835_1_21_15	+	28578	.	.	hypothetical protein	MEELIESLDNLIMIVKELEGRESTSRHFITTWENDYKNLLLVKEYLTDYKKLAKDYRDVELKNKLLKIEKMELEGRYIYEDMRMKYRANRRKWGARYV*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0015	shell	direct	high	296	0.997	GCA_019456835.1_00703
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	7784	8602	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	7785	8603	GCA_019456835_1_21_16	GCA_019456835_1_21_16	+	28578	.	PFAM:PF09681.9	replisome-organiser	MLGMSEIKWIKITTDIFDDEKICLIDALPDPDAILVIWFKILTLAGKHNSNGLLMMTDKVHYTDEMLATIFRRPLNTVRMAIGVFEQFGMIEIIDGIISLPNWEKHQNVDGMEKIKEQTRNRVAKYRKKQKNLALGNVTGNVTVTDGNALEEDKDKNKNRLDKDKNKKRITTTTSSGGQENILELFQSEFRRLLSGFEIEEINHLLNENDVNLVKEALKTAINSGKPNIKYIGGILRNWQMNNVTTVEQVRQSEKKNKDKKEEQEAKDEWGY*	rep_hall_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0016	persistent	direct	high	818	0.999	GCA_019456835.1_00704
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	8590	8748	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	8591	8749	GCA_019456835_1_21_17	GCA_019456835_1_21_17	+	28578	.	.	hypothetical protein	MGVLELIEQFEIDYYPLSYEKKTLLANQPIHQVVACLSEMASWHKCGGRLSW*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0017	persistent	direct	high	158	0.994	GCA_019456835.1_00705
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	8742	9512	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	8743	9513	GCA_019456835_1_21_18	GCA_019456835_1_21_18	+	28578	.	PDB:4M4W_K	Replicative-helicase	MVDNVFEEIALSYHRNTEQQDEFCEKHNIPLIKILRTESVVCRMCESERIHEENQARVNELADAENERERKYYLEKFSLYDEVLKNATLDNFETPTEKEAEKLAFAKRICREWSEGARNNIVLQGEAGTGKSHLAFAMVKALSEYTKEIAIFINVTDLLMKIKADFSQEEFLVNKIASAKFLVLDDLGMEKDSEWSFTILYNILNKRSNTIITTNLISADIQKRYGRPFMSRLMKGVDKDHLMVFNDLTNKRKHYF*	rep_hall_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0018	persistent	direct	high	770	0.999	GCA_019456835.1_00706
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	9527	9721	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	9528	9722	GCA_019456835_1_21_19	GCA_019456835_1_21_19	+	28578	.	.	hypothetical protein	MFILRHGTREDKPFLKSVVIGVTGLDISYSEEKKAMQFVSRGVAVQVGKALRGSFGNFYPVEVE*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0019	persistent	direct	high	194	0.995	GCA_019456835.1_00707
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	9721	9945	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	9722	9946	GCA_019456835_1_21_20	GCA_019456835_1_21_20	+	28578	.	.	hypothetical protein	MLELYFVYNGHCKFYLGTFDNVDDLIEQMEDHQWAFSAITQPRFQKHIGQRTTRFDYGAKDCYYLATFFRRRRK*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0020	shell	direct	high	224	0.996	GCA_019456835.1_00708
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	9942	10043	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	9943	10044	GCA_019456835_1_21_21	GCA_019456835_1_21_21	+	28578	.	PFAM:PF00436.24	single-strand-DNA-binding-protein	MIEFIKEFGITFLCFFIGYSVVECATGKEKKDD*	phrogs_hmm	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0021	shell	direct	high	101	0.99	GCA_019456835.1_00709
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	10036	10431	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	10037	10432	GCA_019456835_1_21_22	GCA_019456835_1_21_22	+	28578	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MINNVTLVGRLTKDPELKYTPSNVAVATFTLAVNRNFKGANGEREADFINCMMWRKQAELFAEWCKKGNLVGVTGRIQTRNYENQEGRRVYLTEVVADGFERLEKRDDTANRSNIEEQMPGYALEEDDFPF*	common_virus_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0022	persistent	direct	high	395	0.997	GCA_019456835.1_00710
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	10447	10614	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	10448	10615	GCA_019456835_1_21_23	GCA_019456835_1_21_23	+	28578	.	.	hypothetical protein	MVGVTYQEIHLFVEFLKKQYGQGRPDYIEALNDLDGMAEVSYREAIERFLDDELR*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0023	persistent	direct	high	167	0.994	GCA_019456835.1_00711
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	10601	10792	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	10602	10793	GCA_019456835_1_21_24	GCA_019456835_1_21_24	+	28578	.	.	hypothetical protein	MNYDKQVVIEGLKRTIEQNEEKIIEYSKPCDARKRRIRALERDLLKKKNKELRKKVEELEDEI*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0024	shell	direct	high	191	0.995	GCA_019456835.1_00712
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	10782	11087	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	10783	11088	GCA_019456835_1_21_25	GCA_019456835_1_21_25	+	28578	.	.	hypothetical protein	MKYKVTEYHSDFQEEQTGTCELCFGTAWVENGSITVEDENGTETEIYLTVWDWGDYDTIYIDNVVNFSAWLQEREVDPIVEETERWSWLHELVEKYNEEVE*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0025	shell	direct	high	305	0.997	GCA_019456835.1_00713
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	11087	11248	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	11088	11249	GCA_019456835_1_21_26	GCA_019456835_1_21_26	+	28578	.	.	hypothetical protein	MSLTLNSTIRDLVLAIGEVIVGSDGKTTTAILEIPNQSFYLEIELKLKEEVAD*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0026	shell	direct	high	161	0.994	GCA_019456835.1_00714
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	11245	11505	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	11246	11506	GCA_019456835_1_21_27	GCA_019456835_1_21_27	+	28578	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILVSAGLNIWQMDRIRDLEEKKPLVIYKADNAGAEIFGKVVEKGRHGKLYTLTIRDYGIFVVTKDVYEKIRVGDEVLL*	mmseqs_cdd	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0027	persistent	direct	high	260	0.996	GCA_019456835.1_00715
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	11502	11993	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	11503	11994	GCA_019456835_1_21_28	GCA_019456835_1_21_28	+	28578	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MNTLEKVKQWFIDRDLENGGRLDKQSLKLSEEFGELCAGYLKKNEKLTKDSIGDCAVVIVGLGLLSKVDLDSIFEESKNVRKNDIMTSFAYANTCISNIQTEQHLKLMTLRIKSLTLLIGHLKSISKSLGYDFEECFELAYQEIKDRKGRWIDGSFVKEEDLA*	phrogs_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0028	shell	direct	high	491	0.998	GCA_019456835.1_00716
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	11990	12388	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	11991	12389	GCA_019456835_1_21_29	GCA_019456835_1_21_29	+	28578	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MTPKFRVWDSVEKKFVEHFFITDNGLICNMEKPTSDSKLLIPIEKSELILMQSTGLKDKNGKEIFEGDVLEIQDEGEVLGNAKLTWDNEQAVFMIEAISVDDIAPFHEILSDESYSYRVVGNIYENKEVLDA*	mmseqs_cdd	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0029	cloud	direct	high	398	0.997	GCA_019456835.1_00717
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	12381	12560	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	12382	12561	GCA_019456835_1_21_30	GCA_019456835_1_21_30	+	28578	.	.	hypothetical protein	MPDVEWIMENCHMMRDNGIWAGEKQISYVSPDGQYTYYVNKRKDGTYYLHGAYKHYGRT*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0030	shell	direct	high	179	0.994	GCA_019456835.1_00718
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	12547	13059	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	12548	13060	GCA_019456835_1_21_31	GCA_019456835_1_21_31	+	28578	.	PFAM:PF13921.5	transcriptional-regulator,-D5-like	MAGRRWTEDEVDYILLAHNDNESTVEEVADFLGRTVSSVRCKSEIINKGKGQFTKRHWQDEEIRILRRYYQKVQDLNQLAKILNRSLDAVIIKANRLGLPRRKKKWDISKYDIETLGKMGMSCRQIACQLDRPLRLIRAVVYHYKIPVGKEEIQQHPWSFDNDMIFMRRT*	phrogs_hmm	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0031	shell	direct	high	512	0.998	GCA_019456835.1_00719
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	13061	13174	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	13062	13175	GCA_019456835_1_21_32	GCA_019456835_1_21_32	+	28578	.	PFAM:PF11753.7	kinase	MTDNINKPSHYQGANGLEDLKKARKNLDWLIEEMEHE*	phrogs_hmm	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0032	shell	direct	high	113	0.991	GCA_019456835.1_00720
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	13167	13346	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	13168	13347	GCA_019456835_1_21_33	GCA_019456835_1_21_33	+	28578	.	PFAM:PF04936.11	host-nuclease-inhibitor	MNEYALYQGETFVTIGTLEEISKETGIAERMLKYYTFASTQKRHPNGRAVIKIEVDDEG*	phrogs_hmm	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0033	shell	direct	high	179	0.994	GCA_019456835.1_00721
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	13336	13566	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	13337	13567	GCA_019456835_1_21_34	GCA_019456835_1_21_34	+	28578	.	PDB:2FJR_A	Repressor-protein-CI	MKDKLNPRQASRFAFLLKQKRKERKLSQEKLAAKLGYSRYLIAKWEKEESVPNIYNVEDICTYFAFPADIILGSRA*	common_virus_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0034	shell	direct	high	230	0.996	GCA_019456835.1_00722
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	13637	14065	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	13638	14066	GCA_019456835_1_21_35	GCA_019456835_1_21_35	+	28578	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQIELLDIIDEKKTRKEAIKVLKKYSRLRRIAGEEYAPKITISYSLEPKSSSGQTSKQVESMVLRRVSAQQDLELIAKAINNLSDMEYTRILIERYCRKKRREDYSIYSELGYSSSEYYRILNKALLEFAESYQASNLLVYK*	mmseqs_cdd	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0035	persistent	direct	high	428	0.998	GCA_019456835.1_00723
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	14355	14921	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	14356	14922	GCA_019456835_1_21_36	GCA_019456835_1_21_36	+	28578	.	CDD:cd01192	site-specific-tyrosine-recombinase	MKKVEPIRDLDDIERIKDYLKNKSDRNYVLFMFGIYSGLRVSDIVPLQVKQVIADRIELKEKKTGKIRYFPISPPLRKEINRYIKDNQLAEYDYLFPSKKKKRTDGVRITHIGRVAVYQILQDAAKYVGLNHIGTHSMRKTFGYHHYKKNSNVAILQKIFNHSTPDITLGYIGYSQDELDQSILSFDY*	common_virus_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0036	shell	direct	high	566	0.998	GCA_019456835.1_00724
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	15156	15500	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	15157	15501	GCA_019456835_1_21_37	GCA_019456835_1_21_37	+	28578	.	pfam01844	HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	MNTNPLRADRSGPHRVAFEKNKKIILKTRNTCGICGQPVDKDLRYPHPLSPVIDHIVPVNKNGHPSDIANLQLAHWQCNRQKSDKLYADEKTNGTKVIGNRNLPQSTDWFKYKG*	mmseqs_cdd	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0037	shell	direct	high	344	0.997	GCA_019456835.1_00725
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	15638	16942	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	15639	16943	GCA_019456835_1_21_38	GCA_019456835_1_21_38	+	28578	.	PDB:2JES_G	Portal-Protein	MTLKGMGYLRKKLANYKMGVDTRYKQYAMQHNEVDVGITIPPQIRQQYRAVLGWAAKGVDSLADRLVFREFANDEFGANEIFAQNNPDVFFDSAILSALIGSCCFVYISQGDDDDAPRLQVIEASNATGVLDPITGLLTEGYAVLKRDDNGYAVLEAYFTSDVTWFYPKDGKPFAIGNPTGVPLLVPVSHRPDAVRPFGRSRITRAGMYYQRYAKRTLERSDVTAEFYSFPQKYVLGLSQDAEAIDTWKATVSSLLTFTKDDEGDKPNVGQFTTSSMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGSGLLNVAYVATCLRDEFSYLRKQFNKTIVKWEPLFEADANMLTLIGDGVIKLNQAVPGYMDAETIRDLTGIKGSDKPAPVVKEGADGGGYRSEPAQENQV*	hallmark_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0038	shell	direct	high	1304	0.999	GCA_019456835.1_00726
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	16896	18131	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	16897	18132	GCA_019456835_1_21_39	GCA_019456835_1_21_39	+	28578	.	PFAM:PF06152.10	minor-head-protein	MVEDIVPSLLKKIKSEFEGARLDSEVLKDLLSKLDHGKANYLDANQYAIEIGEILSKALGASLTNETLPDGKMYYNIAQRVLTDVLGRNHELVSDYAEQVQKNLNSEAKIGLVAQVPELNQDRIDGLVNRLASEESFDDVKWLIVDPIVIFSQSIVDDSIRKNVEFHHKVGLSPKIVRRVVGHPCKWCKSLEGSYNYPEVPKDIYRRHGNCRCTVDYHPGNGKKQNVHTKRWAESQKSAKIEVLKGVGLPVQSGARNYFRDESNDDILPKDFIKAEKHAYLTYDKIKNSNQELEKRKIYSNIGKFKEMKDFTKEDVDIAFNHVFNDIHLLKDGESLFHPEVNMAESWERLITGKDIQSHDLILLKHERLEHDYMYVRGNMDYDTAHAKTDETYNYGNALTRYLERKNNVKI*	phrogs_hmm	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0039	cloud	direct	high	1235	0.999	GCA_019456835.1_00727
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	18118	18345	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	18119	18346	GCA_019456835_1_21_40	GCA_019456835_1_21_40	+	28578	.	.	hypothetical protein	MLKFNLIEVVNGFYHYEVFPEGDVSRREIFEFNPSTREIKRNDPPKYGFDYVSKCIINLKNEDGSLKESGQVAWY*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0040	shell	direct	high	227	0.996	GCA_019456835.1_00728
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	18395	18625	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	18396	18626	GCA_019456835_1_21_41	GCA_019456835_1_21_41	+	28578	.	.	hypothetical protein	MGNIIDFSEKKSSLERGASVKEILEENLEASHDYTSVLVVSLDKDGEINLGYSWDSSLQALGMLDVAKNYILNVIN*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0041	shell	direct	high	230	0.996	GCA_019456835.1_00729
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	18676	20088	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	18677	20089	GCA_019456835_1_21_42	GCA_019456835_1_21_42	+	28578	.	PFAM:PF03354.14	Large-Terminase	MARKKLGNQNPTQSVILKYVKKNSKAKEAVEIYERTGLSCYAWQVNLLTSIMAVDKNGLWVHQKFGYSIPRRNGKSELLYLFELWGLHNGLNILHTAHRISTSHSSFEKVKRYLEKMGYVDGEHFSSIRAKGQERIELFDGGGIVQFRTRTSNGGLGEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPVSNGTVFTNYRKTCLFGRGKYSGWAEWSVSEEKEIDDVEAWYNSNPSMGCHLNERKIEAELGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCVDSMPDLSGKLFVGVKYGQDGANVALSIAVRTVDERIFVETIDCQSVRNGNDWILDFVKRADVATIVVDGASGQKILDEELKKERMKSVILPTVKEIIVANSMWEQGIYQKTLCHAGQPSLKKITTNCEKRNIGSNGGFGYRSHFADMDISLMDSALLAHWACVTTKPKKKQKISY*	hallmark_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0042	shell	direct	high	1412	0.999	GCA_019456835.1_00730
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	20164	20634	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	20165	20635	GCA_019456835_1_21_43	GCA_019456835_1_21_43	+	28578	.	PDB:6B0X_d	Major-Capsid-protein	MKMSEFKTIETQEELDNIVKERIRREREKFGDYDELKKRVSELESENGALKATVEETKQTIAESDAQITELQGQVSNYETASLRTRIALQNGLPYDLADRLQGADEEALKADAERLAGFMRPATPPAPLRDTEPPIGDDKTMQMKQMLRELQPKGE*	hallmark_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0043	shell	direct	moderate	464	0.985	GCA_019456835.1_00731
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	20640	21539	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	20641	21540	GCA_019456835_1_21_44	GCA_019456835_1_21_44	+	28578	.	PDB:3JB5_B	Major-Capsid-protein	MADNAMKAGTLFKPELVTELISKVQGKSVLAKLSAQTPIPFNGVEQFIFNLEGNAQIVGEGEQKLGNKAKLTSKIIKPLKFVYQARITDEFKYASEEKQMNFLSAYMDGFAKKIAEAFDLAALHGLEPKTMTDASFRATNSFDGVISGSVVTYDEAKIDENLEDAVQQVIARGCEVTGIALSPIAGQALGKLKDADKRPVYPEFRFGQNPDSFYGMKSDINKNLTVTGDSAETDHAIVGDFQNRFKWGYAENIPMEIIEYGDPDGAGRDLKAYNEICLRAEAFIGWGILDEDAFARVKA*	hallmark_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0044	shell	direct	high	899	0.999	GCA_019456835.1_00732
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	21545	21757	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	21546	21758	GCA_019456835_1_21_45	GCA_019456835_1_21_45	+	28578	.	cd12935	LEM-like domain of lamina-associated polypeptide 2 (LAP2) and similar proteins. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and postmitotic reassembly. Some of the LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are nonmembrane nuclear polypeptides. All LAP2 isoforms contain an N-terminal lamina-associated polypeptide-Emerin-MAN1 (LEM)-domain that is connected to a highly divergent LEM-like domain by an unstructured linker. Both LEM and LEM-like domains share the same structural fold, mainly composed of two large parallel alpha helices. However, their biochemical nature of the solvent-accessible residues is completely different, which indicates the two domains may target different protein surfaces. The LEM domain is responsible for the interaction with the nonspecific DNA binding protein barrier-to-autointegration factor (BAF), and the LEM-like domain is involved in chromosome binding. The family also includes the yeast helix-extension-helix domain-containing proteins, Heh1p (formerly called Src1p) and Heh2p, and their uncharacterized homologs found mainly in fungi and several in bacteria. Heh1p and Heh2p are inner nuclear membrane proteins that might interact with nuclear pore complexes (NPCs). Heh1p is involved in mitosis. It functions at the interface between subtelomeric gene expression and transcription export (TREX)-dependent messenger RNA export through NPCs. The function of Heh2p remains ill-defined. Both Heh1p and Heh2p contain a LEM-like domain (also termed HeH domain), but lack a LEM domain.	MALYRDTKTGVIISAESVLGGDWVPVEKQVIEEEHLTVVELKSSLDELGIHYEKNAKKSELLSLYKSHKG*	mmseqs_cdd	nonviral_gene	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0045	shell	direct	high	212	0.995	GCA_019456835.1_00733
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	21761	22201	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	21762	22202	GCA_019456835_1_21_46	GCA_019456835_1_21_46	+	28578	.	PFAM:PF09355.9	head-to-tail-adaptor	MGNFAKIEDLELLWRSLKFDERARAEALLEVVSNSLRVEAEKVGKDLDDMVAESVSFASVAKSVTVDIVARTLMTSTDHEPMTQVAESALGYSFSGSYLVPGGGLFIKDTELKRLGLKKKQRYGAIEIYDLPKRNPCHFSGQGRNW*	hallmark_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0046	shell	direct	high	440	0.998	GCA_019456835.1_00734
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	22146	22484	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	22147	22485	GCA_019456835_1_21_47	GCA_019456835_1_21_47	+	28578	.	PFAM:PF10665.8	Minor-capsid-protein	MTYLKGIPVILVDKVEIGNDDFGHPIHRDVEIEVQNVLVAPTSSEDVINQMNLTGKKAEYTLGIPKGDTNKWENREVKFFGRKWRTIGIPQEGIESMIPLSWNRKVMVEVYE*	hallmark_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0047	shell	direct	high	338	0.997	GCA_019456835.1_00735
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	22477	22713	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	22478	22714	GCA_019456835_1_21_48	GCA_019456835_1_21_48	+	28578	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MSNMKFQLNSAGVSALLRSSEMQGILREKGQGIAERAGEGFELTVSPGQKRANAKISTTDIKSMARNKKHNILLKAMR*	hallmark_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0048	shell	direct	high	236	0.996	GCA_019456835.1_00736
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	22710	23045	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	22711	23046	GCA_019456835_1_21_49	GCA_019456835_1_21_49	+	28578	.	PDB:2LFP_A	tail-completion-protein	MIELVIKKFLDGQLDVPSFFEHKPNMPESYVILEKTGSGGSDYVHSATFAFQSYAPSLQKAAELNEKVKKVVEDLITVNEVSGVHHNSDYNFTDTETKQYRYQAVYDINYF*	hallmark_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0049	shell	direct	high	335	0.997	GCA_019456835.1_00737
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	23127	23684	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	23128	23685	GCA_019456835_1_21_50	GCA_019456835_1_21_50	+	28578	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MTTASASNVTAAKPKIGGAVSTAPAGTDLPTNAKTTLNPAFKTLGYISEDGLTNENSPESEEVKAWGGQTVLSSQTKKKDTFKYKLIEGLNIEVLKEVYGPDNVSGTLETGITVTANGKELPEHRLVIDTLLKNGCVKRVVIPRGKVSQIGEINYKDGEPIGYDLTITALPDNSENTHYEYIQGA*	hallmark_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0050	shell	direct	high	558	1.0	GCA_019456835.1_00738
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	23690	23965	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	23691	23966	GCA_019456835_1_21_51	GCA_019456835_1_21_51	+	28578	.	.	hypothetical protein	MSKTFKGETKLGFKFEISERRLNNYELLELIGEVDEGQGQVFPKVVKLLFGDEQAKAFKDHLREEDGIVPNDKMADEIKSVFESVNGLKKS*	.	hypothetical_protein	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0051	shell	direct	high	275	0.996	GCA_019456835.1_00739
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	23980	24363	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	23981	24364	GCA_019456835_1_21_52	GCA_019456835_1_21_52	+	28578	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MNLDEDALICDLAETYQIYDYKQLPLNEVAVFAYGLRDDSRIKQIMSDQIVSLEITLLANIVDRLSISLWLQTKDGQKGVNRPASIAEMLTKNNKEERDERDYLVFESGEDFENYRKALLAKTGGEE*	mmseqs_cdd	nonviral_gene	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0052	shell	direct	high	384	1.0	GCA_019456835.1_00740
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	24363	26774	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	24364	26775	GCA_019456835_1_21_53	GCA_019456835_1_21_53	+	28578	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATELGKAYVQIIPSAKGISGMIQKEMGGEVASAGVSAGESLGSKMIGAVSGIIAAAGIGKTIGASINEGAALQQSLGGVETLFKDSADKVKGFANEAYKTTGLSANAYMENVTGFSASLLQSLGGDTDKAAETANMAMIDMSDNANKMGTSMESIQLAYQGFAKQNYTMLDNLKLGYGGTKQEMQRLLSDAEKLTGVKYDMNNLSDVYSAIHAIQENLDITGTTAREAATTFTGSFESMKAAAQNVLGKLSLGEDIQPALQSLLETTSTFLFGNLIPMIGNILKQIPNLILGGIKSVFSGIFGEGLGSIMGGIVTALGSAFLAFKAFSAVTGLLSRIPAILTTIKTAVTGLFTAMSANPIGIAIAAIAALTAGLVYFFTQTEMGRQIWQGFMDWFSGVWQSVAPVLTEVWNGIVETATTVWNNMMAVVAPIIQAVVDFIRSVWDGISLWWTENQGLIQQTFTTVWNAIQTVIQTVMPIIQSIIETAMNILAPFIETTWNNICTVVTTVWELIKIAIQTAMDVIGGIIKAVMAIINGDWGTAWNAIKGVGEAIWKGLSAAGKAIFDGFAQILSNIWNTIKSVASSAWEGLKSTVLGLIDGLVQGAKKAWESMKQGVRDLVSNVTSIFDGIRNIDLWSAGKAILDGFLGGLKSAWGAVTDFVGGIASWIRDHKGPIEYDRKLLIPAGNAIMQGLNRGLQDRFKGVKKSVSGMAGEISNAFSNDDFGLSGTPTIAKNIEASLAMPSAQIEAKDSQTVSEIAILRASMEKILTAILEKPSDTYLDADKISMSVYQRQGAIYAREGM*	hallmark_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0053	shell	direct	high	2411	1.0	GCA_019456835.1_00741
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	26774	27472	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	26775	27473	GCA_019456835_1_21_54	GCA_019456835_1_21_54	+	28578	.	PDB:2X8K_A	Distal-Tail-Protein	MFYMIINGFNTSTIPHCVVTDFGQVEAAKPRVVEDANLYGANGSYRVLDGGYESYERTFSFYIPKLLDVSTIVEKFQPKDNVLEFSYQLGSVFYADFIGATYSPHGMHAWKLELKLSMQPFRYQKSVEPLIFTASGNINNPGSVYSEPVIEIEGDGDISLTIGRTTMHLTVRRKVTIDCRHKKQNIYNADGAVQNTLRKRGGFFELAVGSNGLVFTGTVRKVTVRPNWRYIL*	hallmark_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0054	persistent	direct	high	698	0.999	GCA_019456835.1_00742
GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote	cenote	CDS	27469	28575	GCA_019456835.1	JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835.1_JACVTA010000029.1	GCA_019456835.1|JACVTA010000029.1	GCA_019456835_1_21	GCA_019456835_1_21@C0	27470	28576	GCA_019456835_1_21_55	GCA_019456835_1_21_55	+	28578	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTEGNRPLNESYNDEIVHLGNNTYQLTFRFPTSNPKWELLKEETFLTADDLHGEQDFYIFEVEKQQGYIQVYANQVISLLNNYIVSSIEVDRVSGTRVLSAFAGSITRANPFSFFSDIDDRHTLNIKDKNAMEVLAKDKHSILGQWGGDMVRNGYNLRLLKNGGSENESLFMYKKNLSSYQHKTSMKSLKTRITFKTTVKGEGENAVDHDYMVVIDSPLLGNYSQIYEDVVEVNDQDVTDEASLIAYGKQYFRTSMCDMLEDNLEISVVGQSDVAVQMFDVVSIYHEWYGLDVRKKITKYTYSPMAKRLKSIGFGTFQSSLANAIGGIVNDAVLNESRNLHQIFEERLKKEIANADRAFDAEFTKR	hallmark_hmm	common_virus	C0	28579.0	0	28579	GCA_019456835.1|JACVTA010000029.1@region_1_28579@tool_cenote_CDS_0055	persistent	ambiguous	low	5	0.005	GCA_019456835.1_00742
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	11288	12415	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	1	1128	GCA_019456835_1_5_15	GCA_019456835_1_5_15	-	43550	.	PDB:1Z19_B	Integrase	MWMEELPNGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEEIYNLFYKSWAQTVKESTKHNCKSVDKKMKEIIPSDTILANLDRRFLQEAIEKIIESNGYITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKALIDVLNRREYHQKYADMVLVLALTGMRYGELTALQLKNIDFENNKIEITGNFDSVNKIKTLPKTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQILKKYGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTEDMEDKLVNKLDTIF*	common_virus_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0001	shell	direct	high	1127	0.999	GCA_019456835.1_00348
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	13539	14489	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	2252	3202	GCA_019456835_1_5_16	GCA_019456835_1_5_16	-	43550	.	COG4823	Abortive infection bacteriophage resistance protein  [Defense mechanisms]. 	MKPFKTIEEQIATLKIRGLSITDESKAAKYLLSNNYYNIINGYSKFFQHPGTDTYIDGVTFDEVSSLYTFDKDVKRAILQAILEAEHHIKSITAHRFAEAYPSQKYAYLNTNSYADNKILDVGFIVSKLSKIINTNKRYRGNSIHHYAHTHSDVPIWVLTDYLEFGDLRTIIENLPNSLQNEIARDLVSFISTNIPDFNDVFPPETLISFLKNINEVRNKCAHNNRLLNFRCRSNSTFWETIHNEEILMGDDSRKTVYSTIISLQCFISKAEFNILWNTLRKKVIKLEKKLPSIDINVINQSLGFPNDWHRNEPRV*	mmseqs_cdd	nonviral_gene	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0002	shell	direct	high	950	0.999	GCA_019456835.1_00351
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	14640	15434	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	3353	4147	GCA_019456835_1_5_17	GCA_019456835_1_5_17	-	43550	.	PDB:2FJR_A	Repressor-protein-CI	MVGRGTLTPLELKLRTDISDNLNKLKQEKGYNQQDIVKGSGISQSTLSQYFAGKRLPSKKNAEILADFFEVPIEVIDPRLSNSPAPTTSPIQSIYDKLEPPRQGKVLTYAEKQLNEQKNEEETKINEVSEVISLYQVEVVSETAAASGFNYGFGYDDTDREIIEVDEQPPHHDIATKVSGDSMQPDYQDGDILYLVDKGLTTYNGDLAVIAYGDRSYFKKIYTENGRLRLVSLNDKYEDITLDFPPAEDTHIKIYAVIGVYRGE*	common_virus_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0003	cloud	direct	high	794	0.999	GCA_019456835.1_00352
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	15585	15728	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	4298	4441	GCA_019456835_1_5_18	GCA_019456835_1_5_18	+	43550	.	.	hypothetical protein	MMEHIIKSLATKDTATVLLALGLIREARLWHKQYLAYKLKDKELKKK*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0004	shell	direct	high	143	0.993	GCA_019456835.1_00353
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	15899	16111	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	4612	4824	GCA_019456835_1_5_19	GCA_019456835_1_5_19	+	43550	.	.	hypothetical protein	MPGQKEKYHDRRGRPDELKVEKVIHLSILRGEGTETDGIRVVEQYYNMDGNLIFELDPCSPHYQEFLGLR*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0005	shell	direct	high	212	0.995	GCA_019456835.1_00354
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	16087	16767	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	4800	5480	GCA_019456835_1_5_20	GCA_019456835_1_5_20	-	43550	.	PFAM:PF13643.5	DNA-binding-protein	MDSNQLFCLFCGCSIPKHYDTFREDEHYFLIRRSHFISDENMSDKIKIQSMKCPNCHKVSIDIVGVGSQFPNRIMHFNPISLAKVYPDYIPQAIRSDYEEAHAILDLSPKASATLSRRCLQGMIRDFWGISKARLVDEIDALKEAVDPSTKNVLDALRKLGNIGAHPEKDVNLIVDIESNEAHKLLKFIELLMQKWYIERHDNEQLLQDILDLDKDKQNQRKPKNS*	phrogs_hmm	nonviral_gene	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0006	shell	direct	high	680	0.999	GCA_019456835.1_00355
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	16933	17166	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	5646	5879	GCA_019456835_1_5_21	GCA_019456835_1_5_21	-	43550	.	.	hypothetical protein	MSKLSHKPNHVVKKLTWENLDNILLSYFSESTTDKPSAVIQLSDFEMSKAEIIEEATAQGYQVIDNSDGYLKFYNEF*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0007	shell	direct	high	233	0.996	GCA_019456835.1_00356
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	17512	17712	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	6225	6425	GCA_019456835_1_5_22	GCA_019456835_1_5_22	+	43550	.	PDB:2FJR_A	Repressor-protein-CI	MQEMNLKKWMVVKDLTVAEFAEKIGVSPQTVTNWRKGHTMPNSKYIPIIEQILGIKYQDITWTETS*	common_virus_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0008	cloud	direct	high	200	0.995	GCA_019456835.1_00358
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	17912	18175	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	6625	6888	GCA_019456835_1_5_23	GCA_019456835_1_5_23	+	43550	.	PFAM:PF04492.12	DNA-binding-protein	MVILSNKENWLVYPEEIAKRLNVSRDMIDRHLKKLEDAGYMRVVKKSLGRGRGVQTFRFFSDIKITDFQFEIMLQRLEDALQKLSTV*	phrogs_hmm	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0009	cloud	direct	high	263	0.996	GCA_019456835.1_00359
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	18479	18697	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	7192	7410	GCA_019456835_1_5_24	GCA_019456835_1_5_24	-	43550	.	.	hypothetical protein	MSRLQPRPQKNYPNYNWDDLDRFIQDILSDPSFKVCCVDPALYAIPKDEIIAECISAGYTVEEREDGILNIS*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0010	shell	direct	high	218	0.995	GCA_019456835.1_00360
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	18815	18958	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	7528	7671	GCA_019456835_1_5_25	GCA_019456835_1_5_25	+	43550	.	.	hypothetical protein	MEDKIIELADYFISESTTYREAKIACEKLLKQVSHEIELRAMESRTV*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0011	persistent	direct	high	143	0.993	GCA_019456835.1_00361
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	18955	19125	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	7668	7838	GCA_019456835_1_5_26	GCA_019456835_1_5_26	+	43550	.	.	hypothetical protein	MKEAVKEFLKFRSRFTKIEWFEINQAIEARLNQKADQLKLDDLDLEIISSRLEKVI*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0012	shell	direct	high	170	0.994	GCA_019456835.1_00362
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	19118	19357	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	7831	8070	GCA_019456835_1_5_27	GCA_019456835_1_5_27	-	43550	.	.	hypothetical protein	MTEIHACLCGNWVNLSADDDCVMGPNMANPYIWWEENAELYSPISKPEANSMYHQDYIYIHYRGADYRIHPMFIQIVSR*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0013	shell	direct	high	239	0.996	GCA_019456835.1_00363
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	19476	19742	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	8189	8455	GCA_019456835_1_5_28	GCA_019456835_1_5_28	+	43550	.	.	hypothetical protein	METVQIVRIKDVIIEKISANDEELEHIFGCSKRQAGDMRREMKKLPSQQKYLRNDGQLVTIKGFDAYLQYRGSQSWKKEMSKTVKMTR*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0014	shell	direct	high	266	0.996	GCA_019456835.1_00364
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	19830	20087	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	8543	8800	GCA_019456835_1_5_29	GCA_019456835_1_5_29	+	43550	.	.	hypothetical protein	MINKDQIIKAQQEKIERIEQLQEKLHKLSMLGLLTAKLLGLPNELEKPLKVTHDISHVIKDVLDGMSPSEAIKQNMAEEDDEEEE*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0015	shell	direct	high	257	0.996	GCA_019456835.1_00365
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	20087	20434	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	8800	9147	GCA_019456835_1_5_30	GCA_019456835_1_5_30	+	43550	.	.	hypothetical protein	MFEPPLVSQLLGTGAVILGFIGAGLLAHQMDKQEEEKIRQKEEERREEQEFASMIIQGYNQAYERGREAQRQEIRKNIRREFKGFTYDNEPPQGLRPEPLALPEPRRARHAKYLG*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0016	shell	direct	high	347	0.997	GCA_019456835.1_00366
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	20451	20594	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	9164	9307	GCA_019456835_1_5_31	GCA_019456835_1_5_31	+	43550	.	.	hypothetical protein	MTRIELENRVWLLANHEEKNELLDLGLTSKARYVKRVLELGKVYAHV*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0017	shell	direct	high	143	0.993	GCA_019456835.1_00367
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	20700	20876	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	9413	9589	GCA_019456835_1_5_32	GCA_019456835_1_5_32	+	43550	.	.	hypothetical protein	MIQELHEEIDNWRAEYIHLGRELGEIINEQQNIILKLQNENRHLKRENWNLKKTKGRR*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0018	shell	direct	high	176	0.994	GCA_019456835.1_00369
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	21003	21476	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	9716	10189	GCA_019456835_1_5_33	GCA_019456835_1_5_33	+	43550	.	PFAM:PF05565.10	resistance-protein	MATLYELTGQFLDVYNLELDEETKLDTLDSIDWEIEYETKVENYIKVMKNLEADVEARKNEIKRLMELNKADEKKKEHLKDTLSASMSLTGHERVDTPLFKVSFRKSQAVEVDEAVLPEYYKVATWKADKKRLKEDLKKGLEIIGASLVEHKNLSIR*	common_virus_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0019	shell	direct	high	473	0.998	GCA_019456835.1_00370
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	21487	22110	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	10200	10823	GCA_019456835_1_5_34	GCA_019456835_1_5_34	+	43550	.	pfam04404	ERF superfamily. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to ERF.	MTKLAFSELQKRMQLEKKKKQGVNYAFRNAEDIYTKFKEINTDWELTVSDDLFGVGERIFVKSTAIVSNGDKQFQSVGFAELDKVPVFKTGNQQMQVPQWTGAVSSYARKYALQGLFGIGEKDVDEYPSDMNEAENQQAKKANDPVISVEKANYYLKEIAAISVEKGKEDGSIVKWFLNHLGVVDYKMIKQSQIEDADMLLAKLKGN*	mmseqs_cdd	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0020	shell	direct	high	623	0.998	GCA_019456835.1_00371
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	22114	22536	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	10827	11249	GCA_019456835_1_5_35	GCA_019456835_1_5_35	+	43550	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MINNVVLVGRLTKDAELRYTQSNVAVATFTLAVNRTFKSENGEREADFINCVMWRKQAENLANWAKKGALIGITGRIQTRTYDNQQGQRVYVTEVVAENFQLMEFKKDGSQPVVDNHDQQAPNFARNSNPMDISDDDLPF*	common_virus_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0021	shell	direct	high	422	0.998	GCA_019456835.1_00372
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	22612	22911	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	11325	11624	GCA_019456835_1_5_36	GCA_019456835_1_5_36	+	43550	.	PFAM:PF10078.8	transcriptional-regulator	MSISEKTLSRWENGESQIKPEKAKQLADYFGVSVGYLLGYESNPLERLESLVDELKEHKDLLGVLDWYTAFDLANDILAIASVEKARWLGRLNEGEIDS*	phrogs_hmm	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0022	shell	direct	high	300	1.0	GCA_019456835.1_00373
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	22889	23314	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	11602	12027	GCA_019456835_1_5_37	GCA_019456835_1_5_37	+	43550	.	PFAM:PF05866.10	Endodeoxyribonuclease-Rus	MKERLILKFELNRKQMINSNDRPHFHQKAKITKFLRQLAAYEGNNVLRDYFGLPYSEDKPCKVKVRIYPPTNRKYDPPNWSPTSKALFDGLTDAKIWTDDNYNVIVSTEFMHGGKSGNKNYRIDLEIYEYHEILQRIVDGI*	common_virus_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0023	shell	direct	high	425	0.998	GCA_019456835.1_00374
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	23330	23497	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	12043	12210	GCA_019456835_1_5_38	GCA_019456835_1_5_38	+	43550	.	.	hypothetical protein	MIGVTYQEIHLFVEFLKKQYGQGRPDYIEALNDLDGMVEVSYREAIERFLDDEVR*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0024	persistent	direct	high	167	0.994	GCA_019456835.1_00375
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	23668	23928	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	12381	12641	GCA_019456835_1_5_39	GCA_019456835_1_5_39	+	43550	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILVSAGLNIWQMDRIAELEKKKPMVIYKADNQGAEIFGKVVEKGRHGKLYTLTIRDYGVFVVTKDVYEKVKVGDEVML*	mmseqs_cdd	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0025	persistent	direct	high	260	0.996	GCA_019456835.1_00376
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	24346	24483	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	13059	13196	GCA_019456835_1_5_40	GCA_019456835_1_5_40	+	43550	.	.	hypothetical protein	MKDNVLYHKKFKRAEITIERTTLKEKVQGVVGIAVLALAIWYFTR*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0026	cloud	direct	high	137	0.993	GCA_019456835.1_00377
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	24540	24665	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	13253	13378	GCA_019456835_1_5_41	GCA_019456835_1_5_41	+	43550	.	PFAM:PF16777.4	transcriptional-regulator	MTVRITEDEFDLISDVSMKLGISKSDTIIQAVEELAQRLEE*	phrogs_hmm	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0027	cloud	direct	high	125	0.992	GCA_019456835.1_00378
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	24820	25053	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	13533	13766	GCA_019456835_1_5_42	GCA_019456835_1_5_42	+	43550	.	.	hypothetical protein	MENQDFINELHMAFRSEARTEELEKWDSLIAAIVRKHFPEEQARVFFDVQATFMAVFANDLINFIINFFTEEEETNE*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0028	cloud	direct	high	233	0.996	GCA_019456835.1_00379
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	25046	25279	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	13759	13992	GCA_019456835_1_5_43	GCA_019456835_1_5_43	+	43550	.	.	hypothetical protein	MNNVILLNNQQEVINEEPWTYKQFKDWVDNQVDFAEAMSLPANKKVLDVMMEKNAEAWAEIADMLENRKLIYKMKKG*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0029	cloud	direct	high	233	0.996	GCA_019456835.1_00380
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	25285	26067	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	13998	14780	GCA_019456835_1_5_44	GCA_019456835_1_5_44	+	43550	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MELQIFKNEQFGQVRMVEIEGQPWLVGKDVADILGYQNGSRDINRHVDEEDRQNYQNGTFGNRGVIIINESGLYSLILSSKLPQAKEFKRWVTSEVLPSIRKHGMYATDQLLNDPDLAIAAFQALKAERTKNKELEVQNSKLQSELDEMKPKADYVDVMLANKGLISTTAIAKNYGESAKKFNLRLKDLGIIFKQGKVWLPYAKYHTKGYVHIEPHPITHKNGMPDVSLHTKWTVKGHFFLYEILKDNGILPLIEREDVA*	common_virus_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0030	cloud	direct	high	782	0.999	GCA_019456835.1_00381
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	26095	26448	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	14808	15161	GCA_019456835_1_5_45	GCA_019456835_1_5_45	-	43550	.	COG2337	mRNA-degrading endonuclease, toxin component of the MazEF toxin-antitoxin module [Defense mechanisms]. 	MTAKYDYIPEKQDIIWIDFDPSVGREIQKRRPAIVVSRREYSERTGFVAVCPITHGQSRLEEQGLLVPVRSNKVDGSVNPLQLYTFDFRERKAQKITTMDTTSFQKVVQLYNFIFEA*	mmseqs_cdd	nonviral_gene	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0031	shell	direct	high	353	0.997	GCA_019456835.1_00382
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	26432	26647	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	15145	15360	GCA_019456835_1_5_46	GCA_019456835_1_5_46	-	43550	.	PFAM:PF04014.17	transcriptional-regulator	MNTVKTRKVGNSVTVTIPKTLNVPEGQEMFVYKGVDNVIVLAPKIPDPFSGDADLRMEDDFEGVRFLDSEI*	phrogs_hmm	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0032	shell	direct	high	215	0.995	GCA_019456835.1_00383
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	26776	27222	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	15489	15935	GCA_019456835_1_5_47	GCA_019456835_1_5_47	+	43550	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MRLLKKVDVQFTKKNVYDVLESYRSYVRMAGAEYLPKITTTYSFEPKTFTGKNTATENMVIEHVDAEAEVLEIERAVNCIMDPYVRQVIAKKYMDMKIQLSDKAIYMDLGYSESEFYRMLSRGALEFAEAYRKGKLIVYRKILGDICK*	mmseqs_cdd	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0033	shell	direct	high	446	0.998	GCA_019456835.1_00384
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	27641	28168	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	16354	16881	GCA_019456835_1_5_48	GCA_019456835_1_5_48	+	43550	.	PFAM:PF03592.15	Terminase-small-subunit	MWLFLIIRKVVMDIGLNQRQKMFASEYLRTGNVYQSAIFAGYSEAYAKTTASKLLENASVKTFIQTETEKMHDENILSAKEALSILSDIARGQRLEEVLMMNPVTGEVDRVTKKADNNTVIKAIAEILKRYPTAKQAEKLELEIEKLKSQIGVDNEQDDKLIDFAKALRGAFDDK*	hallmark_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0034	shell	direct	moderate	494	0.936	GCA_019456835.1_00385
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	28158	29372	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	16871	18085	GCA_019456835_1_5_49	GCA_019456835_1_5_49	+	43550	.	PDB:5OEA_B	Large-Terminase	MTNKFTKRQEEVLTRVLNDDFFICGLHGAKRSGKTVLNNMVFMNEIARVRETADRLNIDEPMYILAGTSSTSIQNNIIQELYNMFDIEPKYDKHGAFTLCGVKVVQVYTGSISGLKRARGFTAFGAYVNEASLANEQVFKEIISRCSGEGARIVWDSNPDIPTHWLRRDYINSGDDMIIDFHFKLDDNTFMSDRYRENIKNATPAGVFYDRDILGLWVTGEGVVYRDFSENMVVDNVPEDITKVYAGVDWGYEHFGSIVVIGETSGGSAYLLEEHAHQYKEIDFWVDLAKNIKERYGNITFWADSARPEHVARFQREQLRTFNANKAVLSGIEEVAKLMKAGRFFVVSNKVSKFKDEVYQYIWNEKTGEPVKENDDVLDAVRYAIYSQHSQPKATVRRRSDYGL*	hallmark_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0035	shell	direct	high	1214	0.999	GCA_019456835.1_00386
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	29384	30403	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	18097	19116	GCA_019456835_1_5_50	GCA_019456835_1_5_50	+	43550	.	PDB:5A20_A	Portal-Protein	MYQYLTYPRDGYDEGSLKKDLIYKLITIHNTESSHLKKLKSYYLGEHAILEHTRRNVNAPNYKTVANHAKDIADTATGYFMGNPIKYNNTADGDIDELLTAFDGAEIDQVDAQNALNMAIYGRAYEYIYAKEGMTELDSTSIDPENTFMVYDDSIERKPLFAVYYYEVKDDTKDTTKYQAEVFTENLHYHMVLRSTDSGTTQSEEATPHNLGQIPIIEYRNNHFAIGDYEQQISLIDAYNSLMGNRVNDKEQAVESILVLYGTQLADTPEDAKVAMKILSEEGLLELPGDSARAEFLKNTLDESATEILRTALKEDIYTFSHVPNLTDENFAGNTSGVK*	hallmark_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0036	shell	direct	high	1019	0.999	GCA_019456835.1_00387
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	30532	31065	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	19245	19778	GCA_019456835_1_5_51	GCA_019456835_1_5_51	+	43550	.	PFAM:PF05551.10	homing-endonuclease	MIKDKMHKHLNQVYYSMLARCYDEKHWAYKWYGKRGIGVSDEFSDVAKFRSWAMQNGVEFGLQLDRIDNDKDYSPSNCRWVPEHTNKRNRSDNVKYKGYILRDYLKKLSEENNISFSTLVYRYYRSIKRDDIIVNDETIDDILLNYKKYDLRQFSKGVDMSGKTIVRDEKGRFVTYY*	common_virus_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0037	shell	direct	high	533	0.998	GCA_019456835.1_00388
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	31295	31732	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	20008	20445	GCA_019456835_1_5_52	GCA_019456835_1_5_52	+	43550	.	PDB:5A20_A	Portal-Protein	MGLEMITKTKEANYKRGLRQRIAIFAHYLGMKQIALESHSIVPQFSRGLPKNLLEISQIVNNLEGKVTNRQLISLLPFVEDPDAELEALEEEKKKNMEDMSMFNKDNTKPEDEVEDEESGVLGEEESQSDLPADGQGRKAGRPVR*	hallmark_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0038	shell	direct	high	437	0.998	GCA_019456835.1_00389
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	31695	33104	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	20408	21817	GCA_019456835_1_5_53	GCA_019456835_1_5_53	+	43550	.	PFAM:PF06152.10	minor-capsid-protein	MDKAEKQADQFDKVYQEAKTYLDKEVNKIFDKFQRDYGLSQVDARQVLKNMKDKKNLNELRKVLEARPSDPNIQRLLADLDSPAYSFRMKRLERLSDDLDRMRESIYHSEKTGSDAFYRDLMKDSYYKATFDLQQQTGLAYGFSGLPESEIKHLQSFSWVGDGSTYSTNIWKNTGKLTSSIKDELLMSLMTGRGTRETAQAIAERFNVGQNDARRLVRTESAFFHNQMELLSYEEADIEKYIFVAVLDKRTSHICQEHDNKVYDRDKAVPGVNCPPMHPWCRSTTVGYDEDADYSKLKRRARNPETGKTELVPADMTYKEWYSKYVDGNIESIKYAEGTPKTTSDILFEERLPKAAEEKVLSHFDFFNNSRIVLRPERLEHILEGHSDIGDDIEGIVHGVIKKPDMILIDHKNDNSILVLGKSLENSVNVVVRLSNTDFDNSIITAMRVSDKTLKRLLKKNKKIYDKNE*	hallmark_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0039	cloud	direct	high	1409	0.999	GCA_019456835.1_00390
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	33709	34278	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	22422	22991	GCA_019456835_1_5_54	GCA_019456835_1_5_54	+	43550	.	PDB:6B0X_d	capsid-scaffolding-protein	MNEETQTVETVEEQKVPAEPAQQPQDEKKYTDADVDAIIDKKFAKWKSEQEAKENEAKKLAKMNADEKQKYQLDQREQELADREKAIARKELTAEAKAMLSERDLPVELVNVVDLTSAETVSQSVAVLQKSWEQAVQKGVQEKLKGGAPMKQAPVDSDGITKEEFARMGYQSRNELYQKNPELYKKLKG*	hallmark_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0040	shell	direct	high	569	0.998	GCA_019456835.1_00393
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	34284	35126	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	22997	23839	GCA_019456835_1_5_55	GCA_019456835_1_5_55	+	43550	.	PDB:4AN5_F	Major-Capsid-protein	MTAGQTKLATMVNPEVMADMVSAKLPKLIKFTPLAYVETALQGQPGNTLTVPAWEYAGDATEVGEGQAISPDKLTTKKTTMTIKKAAKGYEITDEALLSGLGDPLGQATYQLGLAIANKIDDDLVAVAKTATQHVAETPTTLEAIDKALDIFEDEEDAQYVAIINPKDATKLKTDVAKEWTKGSELGANMVVSGTFGEVAGVQIVRSKKVEEGKGFLVKVSPSQTQTDDANKYGAFVIMLKRDVAIETDRDILKKTTVITGDKHYGVYLYDPTRVVKFGE*	hallmark_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0041	shell	direct	high	842	0.999	GCA_019456835.1_00394
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	35138	35320	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	23851	24033	GCA_019456835_1_5_56	GCA_019456835_1_5_56	+	43550	.	PFAM:PF09124.9	endonuclease-VII	MSLLLRRHYIQEEQAGQYSDLENKTLEELKNLAKEAGITGAYKLSKAEIVEVLEDLKSEI*	phrogs_hmm	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0042	shell	direct	high	182	0.995	GCA_019456835.1_00395
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	35310	35498	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	24023	24211	GCA_019456835_1_5_57	GCA_019456835_1_5_57	+	43550	.	.	hypothetical protein	MKFKIKQDFYDWELNVKRLAGEELEITEERYAELADNFASNGVAISDVLEEILPEPEFLEED*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0043	shell	direct	high	188	0.995	GCA_019456835.1_00396
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	35500	35811	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	24213	24524	GCA_019456835_1_5_58	GCA_019456835_1_5_58	+	43550	.	PFAM:PF05135.12	head-tail-adaptor	MSIELLKKMTGEEDTQLLMLLQTRATNLILSETNRTSLTPALSRLIPEVAIELHNRSGAEGEHSRTEGGIAVVYGENGLSTGLLQRIRMHRLARVAGHVFEAE*	phrogs_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0044	shell	direct	high	311	0.997	GCA_019456835.1_00397
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	35792	36130	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	24505	24843	GCA_019456835_1_5_59	GCA_019456835_1_5_59	+	43550	.	PDB:2KX4_A	head-closure-knob	MFLKQSRLKPYPMRRFEKTVTEEGVVKEGYAKEAETVRLELWPASSKLQSEMYGERVNDILNANANKSATIKVKDGVCIDSPTEVTHRVISKKVYTYHQVLELERVRATRGR*	hallmark_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0045	shell	direct	high	338	0.997	GCA_019456835.1_00398
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	36105	36620	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	24818	25333	GCA_019456835_1_5_60	GCA_019456835_1_5_60	+	43550	.	PFAM:PF04883.11	putative-tail-component	MSELRGADRLIAKCRRLASKKTGEDIVLRAVHNAAIKVVQADAKRLAPGNNGELRNSIKTRVKMDGDKAIGEVYTNLHYAPYVEFGTGPKGQASHSGISPEVSVTYRSSPWYVHEDQINVGPYHFQKIGEFYKMYGQPAQPYLYPALRDNQERVSKNISDYVRRKIREQIK*	hallmark_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0046	shell	direct	high	515	0.998	GCA_019456835.1_00399
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	36617	36985	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	25330	25698	GCA_019456835_1_5_61	GCA_019456835_1_5_61	+	43550	.	PFAM:PF05657.10	tail-component	MINIKPVIYKELQKVADNVTDTYPSDWETFPVVIFLEEQNKPGDWFDDQEQKSSIRYKVDIFDDTSTSELAVKINQIFESLGLRRTDCQDVPDPSHLRHKVMRFEGVVDLHSELVFQFRMEN*	hallmark_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0047	shell	direct	high	368	0.997	GCA_019456835.1_00400
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	36988	37401	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	25701	26114	GCA_019456835_1_5_62	GCA_019456835_1_5_62	+	43550	.	PFAM:PF16463.4	tail-tube-protein	MLANGITLSYSETKGSYTKLVGLKEVPEFGIEPEKVENTTLEDKVKKYEFGIGDAGELEYKFSYNNSSETAPYRVLRKAADDKKKLYFEQAYPDGTKVNFEGQVSVKLGGGGVNAVIEFTLKIALQSELEFTDGLGG*	hallmark_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0048	shell	direct	high	413	0.998	GCA_019456835.1_00401
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	37406	37786	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	26119	26499	GCA_019456835_1_5_63	GCA_019456835_1_5_63	+	43550	.	PFAM:PF12363.7	tail-assembly-chaperone-protein	MALPYSIWKISDEKELKLRLSSHQAAKVEEKIGMNLLKIFMPEAGEEFPLPPLKVVLLLIHGALQKYENGYSLEDVYDLYDEYVDNGGDQTTFMTEVLMPLFEVSGFTPRGSKGKKTSKKKMTVVE*	hallmark_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0049	shell	direct	high	380	0.997	GCA_019456835.1_00402
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	37825	38175	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	26538	26888	GCA_019456835_1_5_64	GCA_019456835_1_5_64	+	43550	.	.	hypothetical protein	MFLDIGGKPLDFWDLTVLEIREMIESYNRVKIQERKEKIIDSYRLSQMISNHVSLLLSKDAKVFEFWEYAPELFVEEKQAVEQERQRQALLLHKERMRDFADRHNRKRKEEMNGNS*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0050	shell	direct	high	350	0.997	GCA_019456835.1_00403
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	38162	38725	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	26875	27438	GCA_019456835_1_5_65	GCA_019456835_1_5_65	+	43550	.	PFAM:PF04582.11	tail-length-tape-measure-protein	MATLDELKVMIDAEIAPFRKKMKEVENQVKGTSDQVKNATAKIREQSSSIGSAFGKLAKFAGFAILGKKLLDVGMYSTQTALEVSAAMNQIKRQMGESSQSFLKWVNDNANAMNMGVGEATNYGAVYSNLFSGFIKDTNKLSAYTAKMLQTSAVVAEGSGRTITDVMERIRSGLLGNTEAIDFCRTA*	phrogs_hmm	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0051	shell	direct	high	563	0.998	GCA_019456835.1_00404
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	39027	41984	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	27740	30697	GCA_019456835_1_5_66	GCA_019456835_1_5_66	+	43550	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MAMIESTEAFKKFANGQSWQQLDYQTQQQIRLMAILEQATAKYGNTLSNSVNGRISLFKSLMKDAALNLGNSMLPIINAIMPVLNSFAMVLKNVTAKLAEFIALMFNKKATVKDGVGGAVGDMGNAMKDAAGGAGDLADAVADAGDSAGGLADNLGDSAKNAKKAAKELLGLLGFDEINILQKPKDDDAGGSGGGKGGKGKGGGGGPFKDILPEVELTDMDNQFKSIFDGLGDKLKGLFDLFKKGFDAAFRPEGIERIKTALDQIAKTMGEIATDQRVVNAFNRMAEKIAYALGQVTGSIATIGLGIGVFLAESIANGLGRQKERITRALVALFDNIGNIAEAVGNIAQAFSSAFYDVITSTGAVRIGSAIVSTLLSLTSTIVEVGSKLAGSLFKGFEKVVVTSAPKISSMLQSLLDIVAPIFETIESVVDKFGDGLSRVYDEHVAPAIDSIANAFNGLIDIIQILWEGSWKPFAEFLSNTFGISIETVADLVGGIILEALKLLADTIKLVADGFTAFSDWCKENKEIISTIANAIGTLATVWQGIKFLSWAEQAGGLAGAFELLSGKVSFIVSGIKDLGLALKALTFDKLVSFGETIYLNALYAKDFVVNSGKLIAELGKTALELGKSALAWGVHAAQMGLAAAAEIAQSIAAGVAAAATWALNGAIAVLTSPITLVIAAIAALIAIGVLLYQNWDTVVEFAKTAWQGLCDFISGICQAIGEFFSGLWTKLQEIFEPIGQWFGEKFQQGWDAISNTFSKLGSWFGDRWNESKDALAEANTWLGDKFKSGRGKVNSAFEKVGSWFGDRWKDIKDGVKEADTWFGEKFESAKKKTQNPFQKIGSWFGDRWKNMQDALKEIPNWFKNLFNDAMDNAKNIVKSGIDKLKSFFNFDWSLPKIKLPHFNISGSFSLMPPRIPSFSVDWYARGGVFNSPSIIGVGEAGQEAVMPLERNTGWISILAQKLAERMPANNVPTGYSLPAGDIVI*	hallmark_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0052	shell	direct	high	2951	0.998	GCA_019456835.1_00405
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	42080	42430	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	30793	31143	GCA_019456835_1_5_67	GCA_019456835_1_5_67	+	43550	.	.	hypothetical protein	MAQLTINGVAVKPPKSFQVGIQDIDGETGRNANGDMVRDRITTKRKLDCEWGMLTQEEMSQLLHAVSSEFFEVSYSDPMDGQVTKTFYVGDRTAPSYSFTEKFKPWSGAKFNLVER*	.	hypothetical_protein	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0053	shell	direct	high	350	0.997	GCA_019456835.1_00406
GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote	cenote	CDS	42435	43547	GCA_019456835.1	JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835.1_JACVTA010000014.1	GCA_019456835.1|JACVTA010000014.1	GCA_019456835_1_5	GCA_019456835_1_5@C2	31148	32260	GCA_019456835_1_5_68	GCA_019456835_1_5_68	+	43550	.	PFAM:PF07902.10	minor-structural-protein	MDALTRRQFDRAMFAKERTLAIRVGDYTSRDIKEASFEYGYIKGDTYKPGGTCAGSGKITFTSIITTFNKLDTLHPEIGLLVGDTYQWVKMGEYFINDIEIDRNRNTTTLELMDGMFKLNREYVTDLHFPAEVREVIQEICLKTGIELANDYFGISAMRYHVEQVPEGKKLSFRDMLSAMTQMIGMSCFFNREGKMEIRDLTESNITINADSYFLHGLTKSEIEYQIAGITCKTDKKPLTVGMKTGRSLELDNVFMTQSALNDLYYKLKNLTYYPYNLNYQGHLLLEVGQWVTIQTNKKETFKVPVLSQSFTFKGGLRGRISADSKAGNDTQYSYEGTITKQIKQQDGIEAKIQAQIEAADAAFDAEFTKR	common_virus_hmm	common_virus	C2	32263.0	11288	43551	GCA_019456835.1|JACVTA010000014.1@region_11289_43551@tool_cenote_CDS_0054	.	unmatched_CDS	none	0	0	.
GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote	cenote	CDS	1	207	GCA_019456835.1	JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835.1_JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835_1_70	GCA_019456835_1_70	2	208	GCA_019456835_1_70_1	GCA_019456835_1_70_1	-	6532	.	.	hypothetical protein	MRDRVRIMLGSREIVKRYIGDRLVWSSGPSLLLEVLNTRMWQYWGGYNIDIKGNDIKVAAIRYVQLNNS	.	hypothetical_protein	NaN	.	0	6532	GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote	cenote	CDS	216	1007	GCA_019456835.1	JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835.1_JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835_1_70	GCA_019456835_1_70	217	1008	GCA_019456835_1_70_2	GCA_019456835_1_70_2	-	6532	.	6V8I_BM	Distal Tail Protein, gp58, Tail-Associated	MSAMSNLENLARAIGEDVKAIKEDSELKDREVKKRLDTLESRPKVHPETLVTKAELEEKGYLTSHQDLSTYAQKWELYNDIPIKARISALENRPSFDTLTPTQRDSLKGDNGHSLNASVRIEGSYKNGSTSRLNLFADVFYDGEAVTSGYTLDYYYRGFGYTNWRSLRNQTPDSAGKFGTWSASQRSGGWFEVRIEVNYRGLRASAFTHLDNVNDGEQGRSGVPGQNIVNQNGSQALNYWAGTQEQYDAITTKDPHTIYDIFK*	hhsuite_tools	hypothetical_protein	NaN	.	0	6532	GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote_CDS_0002	persistent	direct	high	791	0.999	GCA_019456835.1_01838
GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote	cenote	CDS	1004	1324	GCA_019456835.1	JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835.1_JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835_1_70	GCA_019456835_1_70	1005	1325	GCA_019456835_1_70_3	GCA_019456835_1_70_3	-	6532	.	PFAM:PF12789.6	tail-fiber-protein	MDTTKLTAFAQAVGEDNKKVNEELKTKVSTSDMNQAIAQAKSEVKAEILGEGTPENLDTLKEIAEKITSMGQDENSALLGKVTEVSGRVDQIANLDLVATYNAAKA*	phrogs_hmm	hypothetical_protein	NaN	.	0	6532	GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote_CDS_0003	persistent	direct	high	320	0.997	GCA_019456835.1_01839
GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote	cenote	CDS	1331	1807	GCA_019456835.1	JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835.1_JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835_1_70	GCA_019456835_1_70	1332	1808	GCA_019456835_1_70_4	GCA_019456835_1_70_4	-	6532	.	PFAM:PF14606.5	neck-protein	MVCNLNMTNLAQIDGGHLIKQGDLASTFGFALLDEDYQVISSLEGEEALISLTKEGYQWKKQVAVTSQGVSFHLDAILPIGSYRLEITAGGYVFPSDKSVHIKIVASDKELVTEEVHALKELDIAKEVEKQLAGRTVGESPVGQELPDLLFYYNLGKV*	phrogs_hmm	hypothetical_protein	NaN	.	0	6532	GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote_CDS_0004	persistent	direct	high	476	0.998	GCA_019456835.1_01840
GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote	cenote	CDS	1823	2101	GCA_019456835.1	JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835.1_JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835_1_70	GCA_019456835_1_70	1824	2102	GCA_019456835_1_70_5	GCA_019456835_1_70_5	-	6532	.	PFAM:PF04531.12	holin	MTEIEHLLIRFLFSLIPVVVLYFSMKDRATKQENRMTAIEKDIENLREFRMSANKRLDNHDEQNKAILVLAEQVKSLGEDVRELKTLIQSKQ*	phrogs_hmm	hypothetical_protein	NaN	.	0	6532	GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote_CDS_0005	persistent	direct	high	278	0.996	GCA_019456835.1_01841
GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote	cenote	CDS	2112	2264	GCA_019456835.1	JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835.1_JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835_1_70	GCA_019456835_1_70	2113	2265	GCA_019456835_1_70_6	GCA_019456835_1_70_6	-	6532	.	.	hypothetical protein	MSKITLDQAKIDMYINLLERGAVDFSWVHKRWKDRVRKELKRRGLSHLAN*	.	hypothetical_protein	NaN	.	0	6532	GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote_CDS_0006	persistent	direct	high	152	0.993	GCA_019456835.1_01842
GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote	cenote	CDS	2257	2799	GCA_019456835.1	JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835.1_JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835_1_70	GCA_019456835_1_70	2258	2800	GCA_019456835_1_70_7	GCA_019456835_1_70_7	-	6532	.	PF07104.11	Protein of unknown function (DUF1366)	MNYEVAINPYLKGGENVTVVAIKMENKGRYSYEQCELPGDHTQDSEDALIQAVLELVRTELDPTSAIVKNQEQLAKTTEALERANQLMDGMQKVNLQNAQDIEDILARLEELEAQGEPDQGEKEETDEDTPQVTDTENQAEEAQPTPAVEDKKESEKEDDISETTNQESPSEDNGGSSNE*	hhsuite_tools	hypothetical_protein	NaN	.	0	6532	GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote_CDS_0007	persistent	direct	high	542	0.998	GCA_019456835.1_01843
GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote	cenote	CDS	2796	3002	GCA_019456835.1	JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835.1_JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835_1_70	GCA_019456835_1_70	2797	3003	GCA_019456835_1_70_8	GCA_019456835_1_70_8	-	6532	.	.	hypothetical protein	MDNHTIDKLVAESLVDRLADIELNYAHLNVHHRLALAELQAFKAVLEYDPALKELFDETQAKMKGNKE*	.	hypothetical_protein	NaN	.	0	6532	GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote_CDS_0008	shell	direct	high	206	0.995	GCA_019456835.1_01844
GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote	cenote	CDS	2995	6531	GCA_019456835.1	JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835.1_JACVTA010000073.1	GCA_019456835.1|JACVTA010000073.1	GCA_019456835_1_70	GCA_019456835_1_70	2996	6532	GCA_019456835_1_70_9	GCA_019456835_1_70_9	-	6532	.	PDB:3GUD_A	Neck-appendage-protein	AFDAEFTKREKAITDAIELAKAKAEEVKQEVSDTINQRFNSFHDEPLRESRRKAEEALRQAGASSSLAQEAKRIGLDSVARLEAFKSQTRSAQTALSGDLNLLKQTVTNDISSKQRQLKTDISKQVQALGQIKNDLAGVRSSQARYEETTKGRLTALTNRMEGKANKSEVRQTAETLTSQIDRIQEESSTRISTMTSRFNQRADALDAGVRRLTEGLRTKADISSLNVTAENIRQSVRRLERDTQSQLNQKLSTAEFEVRAGSIRQEILNATKDKADKTLVVAEAGKLREEFSNMQVGGRNYYRDSEKIQQSRFGFVFDNLDPYLSKSDIGTTWTLSFDCKLDEVDGSFPFHMSHGGANGFGIEGRKEFTATREWQRFRLTGPVFFKEDAPSESKLQMTLFNSDLGYGGTIFIRRIKLEKGTLATDWSPALEDTNGLITQAKASFERTAQELRTDLSAVQAYVAQDGQRQKSLQRYTREESARQARAVREQISRDYVGKSSYQEDVEGIHRRIEGVKTSANREITSQIASYRQSADGTFRDISSQITTYKQDMTRNIANLSHQLAGKVETTDFQRVRESSQLYERILGNTENGIADKVARMAMTNQLFQVEVGKYSVSGPNLIKNSDFKNDTNKWVSTQNLGRLVKHSFYHNGQKDLMRLSNATKNKNFLSSQRFNLERNTDYVLNFRGFNNSALASYDVYILGRRAGESDGFTIFKKVVSSKKLSTSRCEDVSVTFNSGEMDNAYIRFENNGSSSGTADLYITEVDLYKGYKPRTWQPHPEDAVADANKKLEATQTKMTQLAGSWLVQNINSAGDLISGINLGANGHNRLSGKLTHITGETLIDRAVIKSAMVDKLKTANFESGSVTTAVLAAEAVTADKVKFDHAFIRKLIANDAFIGELTSKRIFATKIESVVNRSTFLEAYQGQIGGFTIGRFAQGRGRWISGVNQFSVGMGNGEGGSYNGENTAFWANWGYSWNSPGPNAWYVTTLGNMHCRNGANFHGRVDFSDRSRVNFYSQPSFSNGAVINGSLRVSGRITYSGGEWLYSPIYNKLWKDTSQGGTWLYLNRQGNGGSDWIEMNKRISDRRYKSNIQDSQVSGLDVIEKLKTYSYRKEYDGQIEDISCGIMAQDVQKYAPEAFYENPDGAYSYRTFELVPYLIKAIQELNQKIEKMENRHG*	hallmark_hmm	common_virus	NaN	.	0	6532	GCA_019456835.1|JACVTA010000073.1@region_1_6532@tool_cenote_CDS_0009	shell	direct	moderate	3366	0.952	GCA_019456835.1_01845