core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1953200	1954207	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	1	1008	GCA_019602835_1_1_1847	GCA_019602835_1_1_1847	-	3920452	.	PRK11815	tRNA dihydrouridine(20/20a) synthase DusA. 	MMDWTDRHCRYLHRLLSRHTLLYTEMVTTGALVHGDVQRHLRFDAAEHPVALQLGGSEPADLAHCARLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMVDVVQVPVTVKHRIGIDQNEDYGFVRDFVGVVADAGCRVFIVHARNAWLKGLSPKENREIPPLRYDVAARLKADFPHLTIAINGGFQTDAAVLEELARVDGVMVGREAYHNPWWLARWDEQFFGAAPAALTREQVEEDMVAYMEREATAHGTHWYAVARHMLGLRNGLPGARRWRQVWSDHRLKHLPAREVMALARTKPGATAPDALRASAVQAVALPTEPLSL*	mmseqs_cdd	nonviral_gene	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0001	persistent	direct	high	1007	0.999	GCA_019602835.1_01884
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1954378	1955475	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	1179	2276	GCA_019602835_1_1_1848	GCA_019602835_1_1_1848	+	3920452	.	PDB:1Z19_B	Integrase	MATFSQLPSGKWRAQIRKAGLYRAASFATKREAKDWATQVEAQLNHIATGGYAPVPKGATLGDLIDKYRETAAQRAGKTKEATLLMLGRELGKVKLANLNAVVLRDFIDRRQDDGAGGVTIAADLSFLSAVLKWGRHARQLDINDRLALDARASLQHRGLKTRSKERDREPTDEELSRIYGLWATMKRQQLPMQTICQFALATGMRQGEITRLEIEDIDQQAKTVVIRDRKDPRQKLGNDQTVPLLPDAWAIVEPIIQERKTGFLFPYDGRSVSASFTRACTELGIDDLHFHDLRHRATAQFFRMGLDIPRVALLTGHKTWAMLRRYTAIKPSDVHDAIKKPASPAPDHAGQQGDSQGEESAEAV*	common_virus_hmm	common_virus	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0002	cloud	direct	high	1097	0.999	GCA_019602835.1_01885
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1955501	1955767	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	2302	2568	GCA_019602835_1_1_1849	GCA_019602835_1_1_1849	+	3920452	.	.	hypothetical protein	MATETVNHIDREMAVSEAAALGDLVDWVTKARDLVDEITMCARPSSKLHELLKLHNIAYGNADWLETEAAQGLAYVLQRQRMLIKSLA*	.	hypothetical_protein	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0003	cloud	direct	high	266	0.996	GCA_019602835.1_01886
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1955862	1956563	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	2663	3364	GCA_019602835_1_1_1850	GCA_019602835_1_1_1850	+	3920452	.	.	hypothetical protein	MAIVIKKNYINFKELCQRWSISPEDLHYLIGEGKIVPAVITSESLSVYSWEENERGDHTFYSLEPVIEDQGWVELRPSYPIFLQRVQRDSAYHYRFFWANSDKSPGEPHVGYYPGFDTWFKLNEPITMTDLETFGIFMMDDIDEFEAVSEFIEDKAEQTPTPAVEKPLGTNERRALMNIIGAMLEMLKNPRPGREDDAAIIRELVANYDDKHGISESNLNRKFPEAKRSLRGS*	.	hypothetical_protein	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0004	cloud	direct	high	701	0.999	GCA_019602835.1_01888
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1956675	1956941	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	3476	3742	GCA_019602835_1_1_1851	GCA_019602835_1_1_1851	+	3920452	.	PFAM:PF10013.8	excisionase-and-transcriptional-regulator	METVIQQATENQLDRLRNIADKLDCLTETDIMLLGKLSQSTVEAWRKRGQGPAYILLGNRYLYPRKAVAKYLESITRERSSVSAKEAL*	phrogs_hmm	hypothetical_protein	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0005	cloud	direct	high	266	0.996	GCA_019602835.1_01889
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1956941	1957189	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	3742	3990	GCA_019602835_1_1_1852	GCA_019602835_1_1_1852	+	3920452	.	PF14090.6	Helix-turn-helix domain	MSKSTATREQYKRIIEALRLRPKTSYDLRRLGIYQAPARIKELRDKFGYSITTDPVVIVDRDGYHHARVALYTLVAEPEVGL*	hhsuite_tools	hypothetical_protein	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0006	cloud	direct	high	248	0.996	GCA_019602835.1_01890
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1957186	1958067	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	3987	4868	GCA_019602835_1_1_1853	GCA_019602835_1_1_1853	+	3920452	.	PFAM:PF09664.9	DNA-topoisomerase	MSAVYRASTLKRERRTKERLEQLDAQIIAVLKEDHPQSVRHVFYRMTDPRLPEPVEKSDRGYRHVQDRCVKLRRSGRIPYHWIADMSRRGYFTYTFSGAGDFIRRMAGNYRADLWRDADYRCEVWAESRSIASVLTDTCEELAVSLYPCGGFASLSFAHAAAEEHNGDDDTRPLIVLYVGDYDPAGVLIDRALERELRTHLRADIPMDFRRIAINDEQVQEFDLPTKPRKEGDKRSQHIEYTVEAEAMPAHVLRSILRANVEVLLPENALHVAKVAEASERAHLARMVKMLGG*	phrogs_hmm	hypothetical_protein	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0007	cloud	direct	high	881	0.999	GCA_019602835.1_01891
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1958068	1958679	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	4869	5480	GCA_019602835_1_1_1854	GCA_019602835_1_1_1854	+	3920452	.	.	hypothetical protein	MAHKKPSDPRGGHVRLYWTLIDSLAWRALSYSSQSVYIAMRRRLQSTNNGNISAALGDMKHYGITTSATLAKALRELQTVGLIAVTRQGGIAYGRQVCSLYRFTDEAVYEQPKVGVKACQATDDWKRFEKLAEVKGAIKKAHADAKRQPDKNKSGLQKLKRTDSDSEALSRFNDSDSEAVAVSLVQKLKQASRAKKAANPHAA*	.	hypothetical_protein	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0008	cloud	direct	high	611	0.998	GCA_019602835.1_01892
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1959291	1960523	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	6092	7324	GCA_019602835_1_1_1855	GCA_019602835_1_1_1855	+	3920452	.	PDB:1OHG_E	Major-Capsid-Protein	MQLHEIREARAAKVAEARSLLANANGQNLTPEQQTAFDKLKGEITSLEQQEQRAQFIEDAERRSVGQPVDKAQRTMESAVTVLDAIRCQIENRAATGALAEFQAEAKRQGIEARNGGILVPTSIFEKRATMTTTGAAAVVPDDYRADQFIGLLRNSMIVKSLGARVLTGLRGDTVIPKATGAATAYWVNEGDSLTESNTTYSSIKLEPKTVGALTAFSRQLALQSNPSIEALLRDDIAAVVGLAVDKALLHGTAAAKQPVGILNVTGIQTASLATLSWAAIVGMLEKLGLENITANAIVTHAKAATKLQTTLKDATAGSEYLMQGGRVAGLPAYVTNQLDAKTGTPNTGRVIAGDFSQMVIGEWGATEVLANPYAAGYYEKGDVQLRIMHSMDAVVRHPKAFVVADDLGL*	hallmark_hmm	common_virus	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0009	cloud	direct	high	1232	0.999	GCA_019602835.1_01893
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1960536	1961066	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	7337	7867	GCA_019602835_1_1_1856	GCA_019602835_1_1_1856	+	3920452	.	CDD:COG3740	head-maturation-protease	MLELRGHGTLQASGKTLHGYAAVFNSEANLGTFSEVIRPGAFAKSLATGSNIRALYQHDGTALLGTTRGGTLQLREDAKGLAFTLALPDTSHGRDLAILVDRGDVQGCSFGFRVNPGGDRWEERGSTMVRELLDVDLAEITLTSDPAYSDTTVAMRSKPAQLRVHSDPNFLWLELY*	hallmark_hmm	common_virus	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0010	cloud	direct	high	530	0.998	GCA_019602835.1_01894
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1961066	1962262	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	7867	9063	GCA_019602835_1_1_1857	GCA_019602835_1_1_1857	+	3920452	.	PDB:8CEZ_K	Portal-Protein	MSLVQRVLSAVGLEKRSTLGVNGWPIPLSASAVTPASAQGVSAVYACVQAIAETTASLPLILFKRTGDDRERASDHPLYRVLHDMANPEQTALEFREYMQACVLLRGNAFARIVRGYDGQVRELWPLNPDTVQVRRTPSGLVYEHTQEGVLTRLLAHEVLHLRHRLGDDGVLGVSPITAARGVVELALSEQEHGKNTFTNGAKLLGVLKFPGKLKPEQRQAIAASWASQYAGGANAGRTAVLDEGVDFQALSMSLEDAQWIEARKFSVIEVCRLFRVPPVIVQSMEEANYSNSVELARQFITLSLRRHLVAWEQAIAKQLLTEAGRRSYFAEHQVEGLLRGDSANRAAFYSSGIASGWMLKSEARKLENLPAIEGIDDAPPTQISNPIGAPLPYPSKQ*	hallmark_hmm	common_virus	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0011	cloud	direct	high	1196	0.999	GCA_019602835.1_01895
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1962259	1962681	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	9060	9482	GCA_019602835_1_1_1858	GCA_019602835_1_1_1858	+	3920452	.	PDB:5H0M_A	HNH-endonuclease	MSTERTWPYQPPKRWTKANNGRVLPLNSDAWRKLRRRVLAEQPLCQYCPPGAVTPATEVDHKNNDPADNSRENLVSTCKPCHSIKTMADLYGRPARMGCDEQGNPINPAHHWNQKSPATEAATPTGSPSFNADCLKNRQP*	common_virus_hmm	common_virus	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0012	cloud	direct	high	422	0.998	GCA_019602835.1_01896
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1962678	1963091	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	9479	9892	GCA_019602835_1_1_1859	GCA_019602835_1_1_1859	+	3920452	.	PFAM:PF05119.11	Small-Terminase	MKLTPKRKRSDSAAAAVQAHQNAAQGPIEPPPYITLPAACRPFWDAIVTARPRDTWNDADLANAANLARVQHAIESAVIGSDEHAKLTRLSMALARAVAVHPTATVGRAADLVNAATAEREARQDDGDELIPRLRAV*	hallmark_hmm	common_virus	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0013	cloud	direct	high	413	0.998	GCA_019602835.1_01897
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1963088	1964593	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	9889	11394	GCA_019602835_1_1_1860	GCA_019602835_1_1_1860	+	3920452	.	PDB:6Z6D_A	Large-Terminase	MSRAARIIAFIERFCVTPEGAHVGKPLVLADFQKQFIKDVYDNPAGTRRAILSIARKNGKSGLIAGLLLAHLVGPEAQQNAQIVSGAMSRDQAALVFNLACKMVQQSPKLSPLVKIIPSGKRLIGLPLNVEYKALAADGKTAHGLSPVLAILDEIGQVRGPQSDFIDAITTSQGAHENPLLIAISTQAASDADLLSQWIDDAKRSDDPRIVAHVYAAPEGADLLDVEAWKAANPALGLFRSEDDLREQMTQAQRMPSMENSARNLLLNQRVSTESPFVSPDVWKACAGGVSNFGQSPVFAGLDLSARTDLTALVLICQDDDGVWQVQSHFWTPEQGLQDRARRDRAPYDVWVKQGFLRTTPGATVDYAHVAADMLEILDGLDVQAIAFDRWRIGELRRELDRLGAELPLVEHGQGFRDMAGALDALEAELLNQRINHGGHPVLTMCAANATTVRDPAGNRKLDKSRATGRIDGMQALAMAMGAASRAEAAVAYAGDGFLFV*	hallmark_hmm	common_virus	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0014	cloud	direct	high	1505	0.999	GCA_019602835.1_01898
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1964794	1965072	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	11595	11873	GCA_019602835_1_1_1861	GCA_019602835_1_1_1861	+	3920452	.	CDD:cd08054	Head-Tail-Connector-Protein	MLTLPEVKLHCRIDTNDEDTLLSAMIEAAVASVGDYINAPEPLDDTAPAPVKAACLLLVGDLYSNREALVERPLSKNPTFERLLNPYRVQVL*	hallmark_hmm	common_virus	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0015	cloud	direct	high	278	0.996	GCA_019602835.1_01900
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1965072	1965386	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	11873	12187	GCA_019602835_1_1_1862	GCA_019602835_1_1_1862	+	3920452	.	CDD:pfam05521	Head-Tail-Connector-protein	MQAGKLDQRVTLWRLSGGVDDWGAPLPDELVAVGTVWANVQPLKGREYLAAMAAQSEVTTRITMRYRPGVTPDLKVTHEGKQYEIESVIDTNSRGVELVLMCRG*	hallmark_hmm	common_virus	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0016	cloud	direct	high	314	0.997	GCA_019602835.1_01901
GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote	cenote	CDS	1965740	1966768	GCA_019602835.1	CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835.1_CP080761.1	GCA_019602835.1|CP080761.1	GCA_019602835_1_1	GCA_019602835_1_1@C94	12541	13569	GCA_019602835_1_1_1863	GCA_019602835_1_1_1863	+	3920452	.	COG0679	Predicted permease [General function prediction only]. 	MQARRIPRPYTCRPAPRRHLDPLPTLLSSILVPLVPVILCIGIGYFTARVGWVRATAVPDLSNIVFLVLTPALLFRTMGHVRLQELDFQPVLLYFSAAALLFGLTLAFSRFSTAAAARALAHTFSNLVMIGAPLMGLVYGPQGLVTLFTLVSLHSLVLLTAATMVFELAEAREQQRTGSAAPRPVAHTVWQAVRNSIVHPVPLPILAGLLFAQTGWKLPEMLDRPLQVLAAALGPMALLLVGIALAHTRIGSHWRGALRVAVIKNLALPATLGTLAWALGLSGPAIAVMFTAAAMPVGANVLLFTQRYGVMQEEVSSAIALSTALALITLPVVLVLAQFFMH*	mmseqs_cdd	nonviral_gene	C94	13569	1953200	1966769	GCA_019602835.1|CP080761.1@region_1953201_1966769@tool_cenote_CDS_0017	persistent	direct	moderate	953	0.926	GCA_019602835.1_01902