16S_rRNA_modification_within_P_site_of_ribosome	1
5-FCL-like_protein	5
ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1)	5
A_Gammaproteobacteria_Cluster_Relating_to_Translation	9.x
Acetyl-CoA_fermentation_to_Butyrate	A.x
Adenosyl_nucleosidases	1
Aerotolerance_operon_in_Bacteroides_and_potentially_orthologous_operons_in_other_organisms	1
Alanine_biosynthesis	C
Alkanesulfonates_Utilization	2
Allantoin_Utilization	-1
Aminopeptidases_(EC_3.4.11.-)	1
Anaerobic_respiratory_reductases	7
Archaeal_lipids	-1
Arginine_Biosynthesis_--_gjo	-1
Arginine_Biosynthesis_extended	-1
Arginine_and_Ornithine_Degradation	1.3
Aromatic_amino_acid_degradation	-1
Aromatic_amino_acid_interconversions_with_aryl_acids	1.3
Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon)	-1
Bacterial_Cell_Division	10
Bacterial_Cytoskeleton	1.124
Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	1
Bacterial_cell_division_cluster	2.x
Bacterial_checkpoint-control-related_cluster	9.x
Bacterial_signal_recognition_particle_(SRP)	1
Biogenesis_of_c-type_cytochromes	9
Biotin_biosynthesis	1
Biotin_biosynthesis_Experimental	2
Biotin_synthesis_cluster	1
CBSS-138119.3.peg.2719	9
CBSS-176279.3.peg.868	1.x
CBSS-176280.1.peg.1561	-1
CBSS-196620.1.peg.2477	-1
CBSS-211586.1.peg.2832	1
CBSS-216600.3.peg.802	1
CBSS-224308.1.peg.3555	-1
CBSS-226186.1.peg.3978	1
CBSS-226186.1.peg.4416	1
CBSS-246196.1.peg.364	-1
CBSS-257314.1.peg.752	-1
CBSS-266117.6.peg.1260	2
CBSS-269801.1.peg.1715	1
CBSS-290633.1.peg.1906	-1
CBSS-296591.1.peg.2330	-1
CBSS-312309.3.peg.1965	9.x
CBSS-315749.4.peg.3658	3
CBSS-316407.3.peg.1371	-1
CBSS-320388.3.peg.3759	-1
CBSS-323097.3.peg.2594	1
CBSS-323850.3.peg.3269	-1
CBSS-326442.4.peg.1852	-1
CBSS-342610.3.peg.1536	-1
CBSS-342610.3.peg.1794	-1
CBSS-342610.3.peg.283	-1
CBSS-349161.4.peg.2417	1.x
CBSS-354.1.peg.2917	2.x
CBSS-36873.1.peg.4752	-1
CBSS-393121.3.peg.1913	-1
CBSS-393124.3.peg.2657	-1
CBSS-393130.3.peg.794	-1
CBSS-56780.10.peg.1536	1
CBSS-630.2.peg.3360	-1
CBSS-83331.1.peg.3039	8
CBSS-83333.1.peg.946	-1
CBSS-84588.1.peg.1247	1
CBSS-87626.3.peg.3639	-1
CBSS-89187.3.peg.2957	-1
CMP-N-acetylneuraminate_Biosynthesis	-1
CRISPRs	1
CTP_synthase_(EC_6.3.4.2)_cluster	9
Calvin-Benson_cycle	-1
Campylobacter_Iron_Metabolism	-1
Capsular_Polysaccharides_Biosynthesis_and_Assembly	-1
Capsular_heptose_biosynthesis	-1
Cardiolipin_synthesis	1
Carotenoids	-1
Cell_Division_Subsystem_including_YidCD	1
Cell_division-ribosomal_stress_proteins_cluster	2
Chitin_and_N-acetylglucosamine_utilization	-1
Chorismate:_Intermediate_for_synthesis_of_Tryptophan,_PAPA_antibiotics,_PABA,_3-hydroxyanthranilate_and_more.	missing
Cluster_containing_Alanyl-tRNA_synthetase	1
Cluster_containing_Glutathione_synthetase	1.x
Cobalamin_synthesis	1
Cobalt-zinc-cadmium_resistance	1.8
Coenzyme_A_Biosynthesis	A.231
Coenzyme_A_Biosynthesis_cluster	1
Coenzyme_B12_biosynthesis	1
Coenzyme_M_biosynthesis_--_gjo	-1
Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	missing
Conjugative_transposon,_Bacteroidales	1
Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	9
Conserved_gene_cluster_possibly_involved_in_RNA_metabolism	-1
Control_of_cell_elongation_-_division_cycle_in_Bacilli	-1
Copper_Transport_System	1.0x
Copper_homeostasis	6
Copper_homeostasis:_copper_tolerance	3
Cyanate_hydrolysis	-1
D-galactarate,_D-glucarate_and_D-glycerate_catabolism	-1
D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	-1
D-ribose_utilization	-1
DNA_Repair_Base_Excision	99
DNA_gyrase_subunits	2
DNA_processing_cluster	9.x
DNA_repair,_UvrABC_system	1
DNA_repair,_bacterial	1
DNA_repair,_bacterial_MutL-MutS_system	1
DNA_repair,_bacterial_RecBCD_pathway	-1
DNA_repair,_bacterial_RecFOR_pathway	1
DNA_repair,_bacterial_UvrD_and_related_helicases	1
DNA_repair_system_including_RecA,_MutS_and_a_hypothetical_protein	1
DNA_replication,_archaeal	-1
DNA_replication_cluster_1	9
DNA_structural_proteins,_bacterial	1.1100
DNA_topoisomerases,_Type_I,_ATP-independent	1
DNA_topoisomerases,_Type_II,_ATP-dependent	1.100
De_Novo_Purine_Biosynthesis	1
De_Novo_Pyrimidine_Synthesis	1
Deoxyribose_and_Deoxynucleoside_Catabolism	X
Dimethylarginine_metabolism	5
Dipeptidases_(EC_3.4.13.-)	1
ECSIG4-SIG7	1
Entner-Doudoroff_Pathway	-1
Ethanolamine_utilization	-1
Exopolysaccharide_Biosynthesis	-1
Fatty_Acid_Biosynthesis_FASII	E.x
Fermentations:_Lactate	-1
Fermentations:_Mixed_acid	-1
Flagellar_motility	-1
Flagellum	-1
Flagellum_in_Campylobacter	-1
Flavodoxin	1
Folate_Biosynthesis	5
Folate_biosynthesis_cluster	9.x
Fructooligosaccharides(FOS)_and_Raffinose_Utilization	-1
Fructose_utilization	-1
GMP_synthase	1
Galactosylceramide_and_Sulfatide_metabolism	2
Gentisate_degradation	3.3
Glutamate_dehydrogenases	1
Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	1.24
Glutathione:_Non-redox_reactions	9
Glycerate_metabolism	1
Glycine_Biosynthesis	1.123
Glycine_and_Serine_Utilization	1.123
Glycine_cleavage_system	1
Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	-1
Glycogen_metabolism	5
Glycolate,_glyoxylate_interconversions	5
Glycolysis_and_Gluconeogenesis	1.9211
Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes	-1
Glycyl-tRNA_synthetase_containing_cluster	9.x
Glyoxylate_bypass	-1
GroEL_GroES	1
Group_II_intron-associated_genes	1
Heat_shock_dnaK_gene_cluster_extended	5
Heme,_hemin_uptake_and_utilization_systems_in_GramNegatives	-1
Heme_and_Siroheme_Biosynthesis	9
Hemin_transport_system	1
Hfl_operon	1.010
High_affinity_phosphate_transporter_and_control_of_PHO_regulon	-1
Histidine_Degradation	1.100
Housecleaning_nucleoside_triphosphate_pyrophosphatases	1
Hyperosmotic_potassium_uptake	1
Indole-pyruvate_oxidoreductase_complex	1
Inorganic_Sulfur_Assimilation	-1
Inteins	-1
Iron-sulfur_cluster_assembly	1
Isoleucine_degradation	-1
Isoprenoid_Biosynthesis	2.x
Isoprenoid_Biosynthesis:_Interconversions	1
Isoprenoinds_for_Quinones	1
KDO2-Lipid_A_biosynthesis	1.0
KH_domain_RNA_binding_protein_YlqC	-1
L-fucose_utilization	-1
L-rhamnose_utilization	-1
LMPTP_YfkJ_cluster	93
LOS_core_oligosaccharide_biosynthesis	-1
LSU_ribosomal_proteins_cluster	2
Lactate_utilization	1
Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway	-1
Lactose_and_Galactose_Uptake_and_Utilization	1.x
Lactose_utilization	1.00
Legionaminic_Acid_Biosynthesis	-1
Leucine_Biosynthesis	-1
Leucine_Degradation_and_HMG-CoA_Metabolism	-1
Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)	-1
Lipoic_acid_metabolism	3.0
Lipoic_acid_synthesis_cluster	2
Lipoprotein_Biosynthesis	2
Lipoprotein_sorting_system	3
Llipid_A_biosynthesis_cluster	9.2
LysR-family_proteins_in_Escherichia_coli	1
LysR-family_proteins_in_Salmonella_enterica_Typhimurium	1
Lysine_Biosynthesis_DAP_Pathway	D
Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch	0.101
Lysine_degradation	5.0
Lysine_fermentation	1.00
Macromolecular_synthesis_operon	9
Magnesium_transport	1
Maltose_and_Maltodextrin_Utilization	1.x
Mannose_Metabolism	2.0
Melibiose_Utilization	-1
Menaquinone_Biosynthesis_via_Futalosine_--_gjo	-1
Metallocarboxypeptidases_(EC_3.4.17.-)	1
Methicillin_resistance_in_Staphylococci	-1
Methionine_Degradation	2
Methionine_Salvage	-1
Methylglyoxal_Metabolism	-1
Methylthiotransferases	1.1110
Multidrug_Resistance_Efflux_Pumps	1.2
Murein_Hydrolases	3
Mycobacterium_virulence_operon_involved_in_DNA_transcription	1.x
Mycobacterium_virulence_operon_involved_in_protein_synthesis_(LSU_ribosomal_proteins)	1
Mycobacterium_virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)	1.x
Mycobacterium_virulence_operon_possibly_involved_in_quinolinate_biosynthesis	1
N-Acetyl-Galactosamine_and_Galactosamine_Utilization	-1
N-linked_Glycosylation_in_Bacteria	-1
NAD_and_NADP_cofactor_biosynthesis_global	C
Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	1
Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	2
NhaA,_NhaD_and_Sodium-dependent_phosphate_transporters	1
Niacin-Choline_transport_and_metabolism	-1
Nitrate_and_nitrite_ammonification	1
Nitric_oxide_synthase	-1
Nitrosative_stress	4
Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis	1
Nucleoside_triphosphate_pyrophosphohydrolase_MazG	1.110
Nudix_proteins_(nucleoside_triphosphate_hydrolases)	1
NusA-TFII_Cluster	1
One-carbon_metabolism_by_tetrahydropterines	4
Oxidative_stress	8.2
Pentose_phosphate_pathway	2
Peptide_methionine_sulfoxide_reductase	1
Peptidoglycan_Biosynthesis	1.9
Peptidoglycan_biosynthesis--gjo	1
Peptidyl-prolyl_cis-trans_isomerase	1
Periplasmic_Stress_Response	1.x
Periplasmic_disulfide_interchange	1
Persister_Cells	1
Phenylalanine_and_Tyrosine_Branches_from_Chorismate	missing
Phosphate_metabolism	1.999
Phosphoglycerate_mutase_protein_family	1
Photorespiration_(oxidative_C2_cycle)	-1
Plasmid_replication	-1
Poly-gamma-glutamate_biosynthesis	-1
Polyadenylation_bacterial	-1
Polyamine_Metabolism	2?
Polyhydroxybutyrate_metabolism	4.6
Polyphosphate	1
Polyprenyl_Diphosphate_Biosynthesis	1.0
Potassium_homeostasis	2
Programmed_frameshift	1
Proline,_4-hydroxyproline_uptake_and_utilization	8
Propanediol_utilization	-1
Propionyl-CoA_to_Succinyl-CoA_Module	2
Protection_from_Reactive_Oxygen_Species	2
Protein_chaperones	1.0
Protein_deglycation	-1
Protein_degradation	1
Proteolysis_in_bacteria,_ATP-dependent	2
Proteorhodopsin	-1
Proton-dependent_Peptide_Transporters	1
Purine_Utilization	5
Purine_conversions	3.99?
Purine_salvage_cluster	9
Putative_sugar_ABC_transporter_(ytf_cluster)	-1
Pyridoxin_(Vitamin_B6)_Biosynthesis	2.x
Pyrimidine_utilization	-1
Pyruvate:ferredoxin_oxidoreductase	2
Pyruvate_Alanine_Serine_Interconversions	2.0
Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	9
Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	2
Queuosine-Archaeosine_Biosynthesis	1.111
Quinate_degradation	3
RNA_methylation	1
RNA_modification_and_chromosome_partitioning_cluster	9.x
RNA_modification_cluster	9
RNA_polymerase_bacterial	1.000
RNA_processing_and_degradation,_bacterial	1
RNA_pseudouridine_syntheses	1
RecA_and_RecX	1
Recycling_of_Peptidoglycan_Amino_Acids	1.1
Redox-dependent_regulation_of_nucleus_processes	2
Resistance_to_Vancomycin	X
Resistance_to_fluoroquinolones	1
Respiratory_dehydrogenases_1	1.161
Restriction-Modification_System	1.0
Rhamnose_containing_glycans	2
Riboflavin,_FMN_and_FAD_metabolism	A.x1x4
Riboflavin,_FMN_and_FAD_metabolism_in_plants	A
Riboflavin_synthesis_cluster	1
Ribonuclease_H	1.010
Ribonucleases_in_Bacillus	-1
Ribonucleotide_reduction	1
Ribosomal_protein_S12p_Asp_methylthiotransferase	1
Ribosomal_protein_S5p_acylation	1.111
Ribosome_LSU_bacterial	1
Ribosome_SSU_bacterial	1.110
Ribosome_activity_modulation	1
Ribosome_biogenesis_bacterial	1
Ribosome_recycling_related_cluster	9
Rubrerythrin	7
RuvABC_plus_a_hypothetical	1
Salicylate_and_gentisate_catabolism	2
Selenocysteine_metabolism	0.1
Septum_site-determining_cluster_Min	1.x
Serine_Biosynthesis	2.x
Serine_endopeptidase_(EC_3.4.21.-)	1
Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	-1
Signal_peptidase	3
Soluble_cytochromes_and_functionally_related_electron_carriers	6.4
Spore_Core_Dehydration	1.1
Sporulation-associated_proteins_with_broader_functions	1.100
Staphylococcal_pathogenicity_islands_SaPI	-1
Staphylococcal_phi-Mu50B-like_prophages	-1
Stationary_phase_repair_cluster	9.x
Stringent_Response,_(p)ppGpp_metabolism	1
Succinate_dehydrogenase	5
TCA_Cycle	7.xxx1
Teichoic_and_lipoteichoic_acids_biosynthesis	-1
Terminal_cytochrome_d_ubiquinol_oxidases	2
Terminal_cytochrome_oxidases	1.11
Tetracycline_resistance,_ribosome_protection_type	-1
Tetracycline_resistance,_ribosome_protection_type,_too	-1
Thiamin_biosynthesis	1
Thioredoxin-disulfide_reductase	1
Threonine_anaerobic_catabolism_gene_cluster	-1
Threonine_and_Homoserine_Biosynthesis	1.x
Threonine_degradation	5.5
Ton_and_Tol_transport_systems	2
Transcription_factors_bacterial	1
Transcription_initiation,_bacterial_sigma_factors	1
Translation_elongation_factor_G_family	4
Translation_elongation_factor_P_lysylation	-1
Translation_elongation_factors_bacterial	1.1
Translation_initiation_factors_bacterial	1.111
Translation_termination_factors_bacterial	1.13
Transport_system_clustering_with_HemG	1.x
Trehalose_Biosynthesis	-1
Two-component_regulatory_systems_in_Campylobacter	-1
Type_I_Restriction-Modification	1
Type_VI_secretion_systems	-1
UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	X
USS-DB-7	-1
Universal_GTPases	2
Unknown_carbohydrate_utilization_(_cluster_Ydj_)	-1
Unknown_carbohydrate_utilization_(_cluster_Yeg_)	-1
Unspecified_monosaccharide_transport_cluster	-1
Uracil-DNA_glycosylase	1
V-Type_ATP_synthase	9
Valine_degradation	-1
Xanthine_Metabolism_in_Bacteria	1.0
YcfH	3
YgjD_and_YeaZ	6
YjeE	1.1111
cAMP_signaling_in_bacteria	-1
cell_division_cluster_containing_FtsQ	1
cell_division_core_of_larger_cluster	1
dNTP_triphosphohydrolase_protein_family	1
dTDP-rhamnose_synthesis	1.x
mnm5U34_biosynthesis_bacteria	1
n-Phenylalkanoic_acid_degradation	-1
pVir_Plasmid_of_Campylobacter	-1
pyrimidine_conversions	1
riboflavin_to_FAD	3x
tRNA-methylthiotransferase_containing_cluster	2.x
tRNA_aminoacylation,_Ala	1.00
tRNA_aminoacylation,_Arg	1.00
tRNA_aminoacylation,_Asp_and_Asn	1.0
tRNA_aminoacylation,_Cys	1
tRNA_aminoacylation,_Glu_and_Gln	1.00
tRNA_aminoacylation,_Gly	1
tRNA_aminoacylation,_His	1
tRNA_aminoacylation,_Ile	1.00
tRNA_aminoacylation,_Leu	1.00
tRNA_aminoacylation,_Lys	2.00
tRNA_aminoacylation,_Met	1.00
tRNA_aminoacylation,_Phe	1.00
tRNA_aminoacylation,_Pro	1.00
tRNA_aminoacylation,_Ser	1.00
tRNA_aminoacylation,_Thr	1.00
tRNA_aminoacylation,_Trp	1.00
tRNA_aminoacylation,_Tyr	1.00
tRNA_aminoacylation,_Val	1.00
tRNA_modification_Bacteria	1
tRNA_nucleotidyltransferase	1
tRNA_processing	1
tRNAs	1
