16S_rRNA_modification_within_P_site_of_ribosome	1
2-phosphoglycolate_salvage	1
5-FCL-like_protein	5
ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1)	1
ABC_transporter_dipeptide_(TC_3.A.1.5.2)	9
ABC_transporter_oligopeptide_(TC_3.A.1.5.1)	2
A_Gammaproteobacteria_Cluster_Relating_to_Translation	9.x
Adenosyl_nucleosidases	1
Adhesion_of_Campylobacter	-1
Aerotolerance_operon_in_Bacteroides_and_potentially_orthologous_operons_in_other_organisms	1
Alanine_biosynthesis	C
Alkanesulfonates_Utilization	2
Allantoin_Utilization	-1
Alpha-Amylase_locus_in_Streptocococcus	4
Aminoglycoside_adenylyltransferases	1
Aminopeptidases_(EC_3.4.11.-)	1
Ammonia_assimilation	3
Anaerobic_respiratory_reductases	7
Archaeal_lipids	-1
Arginine_Biosynthesis_--_gjo	-1
Arginine_Biosynthesis_extended	-1
Arginine_Deiminase_Pathway	1.0
Arginine_and_Ornithine_Degradation	1.3
Aromatic_amino_acid_degradation	-1
Bacterial_Cell_Division	4
Bacterial_Chemotaxis	9
Bacterial_Cytoskeleton	1.124
Bacterial_RNA-metabolizing_Zn-dependent_hydrolases	1
Bacterial_cell_division_cluster	2.x
Bacterial_checkpoint-control-related_cluster	2
Bacterial_hemoglobins	-1
Bacterial_signal_recognition_particle_(SRP)	1
Benzoate_transport_and_degradation_cluster	-1
Beta-lactamase	1
Biofilm_formation_in_Staphylococcus	-1
Biotin_biosynthesis	3
Biotin_biosynthesis_Experimental	2
CBSS-1352.1.peg.856	5
CBSS-138119.3.peg.2719	9
CBSS-176279.3.peg.868	1.x
CBSS-176299.4.peg.1996A	1
CBSS-211586.1.peg.2832	1
CBSS-216600.3.peg.802	1
CBSS-224308.1.peg.3555	-1
CBSS-224911.1.peg.435	-1
CBSS-243265.1.peg.198	-1
CBSS-246196.1.peg.364	-1
CBSS-257314.1.peg.752	2
CBSS-258594.1.peg.3339	-1
CBSS-266117.6.peg.1260	2
CBSS-269801.1.peg.1715	1
CBSS-272943.3.peg.1367	1
CBSS-290633.1.peg.1906	-1
CBSS-292415.3.peg.2341	-1
CBSS-296591.1.peg.2330	-1
CBSS-312309.3.peg.1965	9.x
CBSS-314276.3.peg.1499	1
CBSS-315749.4.peg.3658	-1
CBSS-316057.3.peg.1308	-1
CBSS-316273.3.peg.227	2
CBSS-316273.3.peg.2709	-1
CBSS-316407.3.peg.2816	-1
CBSS-320388.3.peg.3759	-1
CBSS-323098.3.peg.2823	-1
CBSS-326442.4.peg.1852	-1
CBSS-331978.3.peg.2915	1
CBSS-342610.3.peg.1536	-1
CBSS-342610.3.peg.1794	-1
CBSS-349161.4.peg.2417	1.x
CBSS-354.1.peg.2917	5.x
CBSS-36873.1.peg.4752	-1
CBSS-393124.3.peg.2657	-1
CBSS-393130.3.peg.794	-1
CBSS-393133.3.peg.2787	-1
CBSS-469378.4.peg.430	1
CBSS-521098.4.peg.1460	1
CBSS-56780.10.peg.1536	1
CBSS-630.2.peg.3360	-1
CBSS-83331.1.peg.3039	2
CBSS-84588.1.peg.1247	1
CBSS-87626.3.peg.3639	-1
CBSS-89187.3.peg.2957	-1
CMP-N-acetylneuraminate_Biosynthesis	1.x
CTP_synthase_(EC_6.3.4.2)_cluster	9
Cadmium_resistance	1
Calvin-Benson_cycle	-1
Capsular_heptose_biosynthesis	-1
Carbon_Starvation	1.1
Carbon_monoxide_oxidation	-1
Carbon_storage_regulator	1.1
Cell_Division_Subsystem_including_YidCD	1
Cell_division-ribosomal_stress_proteins_cluster	2
Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators	1
Chitin_and_N-acetylglucosamine_utilization	3
Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	3.x
Chorismate_Synthesis	1
Citrate_Metabolism,_Transport,_and_Regulation	1.x
ClpAS_cluster	9
Cluster_containing_Alanyl-tRNA_synthetase	1.x
CoA_disulfide_thiol-disulfide_redox_system	1
Cobalamin_synthesis	1
Cobalt-zinc-cadmium_resistance	2.19.xx
Coenzyme_A_Biosynthesis	F.8871
Coenzyme_M_biosynthesis_--_gjo	-1
Colicin_V_and_Bacteriocin_Production_Cluster	2.x
Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	1
Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase	9
Conserved_gene_cluster_possibly_involved_in_RNA_metabolism	-1
Control_of_cell_elongation_-_division_cycle_in_Bacilli	-1
Copper_Transport_System	1.0x
Copper_homeostasis	6
D-Galacturonate_and_D-Glucuronate_Utilization	-1
D-galactarate,_D-glucarate_and_D-glycerate_catabolism	1
D-galactarate,_D-glucarate_and_D-glycerate_catabolism_-_gjo	1
D-ribose_utilization	B.1
DNA_Repair_Base_Excision	9
DNA_gyrase_subunits	2
DNA_processing_cluster	1.22
DNA_repair,_UvrABC_system	1
DNA_repair,_bacterial	1
DNA_repair,_bacterial_DinG_and_relatives	1.0100
DNA_repair,_bacterial_MutL-MutS_system	1
DNA_repair,_bacterial_RecFOR_pathway	1
DNA_repair,_bacterial_UmuCD_system	-1
DNA_repair,_bacterial_UvrD_and_related_helicases	1
DNA_repair_system_including_RecA,_MutS_and_a_hypothetical_protein	2.x
DNA_replication,_archaeal	-1
DNA_replication_cluster_1	9
DNA_structural_proteins,_bacterial	1.0000
DNA_topoisomerases,_Type_I,_ATP-independent	1
DNA_topoisomerases,_Type_II,_ATP-dependent	1.100
De_Novo_Purine_Biosynthesis	1
De_Novo_Pyrimidine_Synthesis	1.x
Deoxyribose_and_Deoxynucleoside_Catabolism	X
Dipeptidases_(EC_3.4.13.-)	1
ECF_class_transporters	127
Entner-Doudoroff_Pathway	6
Ethanolamine_utilization	-1
Exopolysaccharide_Biosynthesis	-1
Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	-1
Fatty_Acid_Biosynthesis_FASII	D
Fermentations:_Lactate	1.10
Fermentations:_Mixed_acid	-1
Flagellar_motility	2
Flagellum	1
Flagellum_in_Campylobacter	1
Flavodoxin	1
Folate_Biosynthesis	2.006
Folate_biosynthesis_cluster	2.x
Formate_hydrogenase	8
Fructooligosaccharides(FOS)_and_Raffinose_Utilization	-1
Fructose_utilization	-1
G3E_family_of_P-loop_GTPases_(metallocenter_biosynthesis)	1
GMP_synthase	1
Galactosylceramide_and_Sulfatide_metabolism	2
Glutamate_dehydrogenases	1
Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis	1.0
Glutathione:_Non-redox_reactions	9
Glutathione:_Redox_cycle	8
Glycerate_metabolism	1
Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	7.0
Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	1.x
Glycine_Biosynthesis	1.13
Glycine_and_Serine_Utilization	1.12
Glycine_cleavage_system	2
Glycine_reductase,_sarcosine_reductase_and_betaine_reductase	1.100
Glycogen_metabolism	1
Glycolate,_glyoxylate_interconversions	?
Glycolysis_and_Gluconeogenesis	1.9271
Glycyl-tRNA_synthetase_containing_cluster	9.x
GroEL_GroES	1
Group_II_intron-associated_genes	1
HPr_catabolite_repression_system	9
Heat_shock_dnaK_gene_cluster_extended	5
Heme_biosynthesis_orphans	-1
Hfl_operon	1.011
Histidine_Degradation	1.100
Housecleaning_nucleoside_triphosphate_pyrophosphatases	1
Hyperosmotic_potassium_uptake	1
Hypothetical_protein_HNE_2485	-1
Inorganic_Sulfur_Assimilation	-1
Integrons	1
Inteins	-1
Iron_transport_system_including_ABC_transporter	1.x
Isoleucine_degradation	-1
Isoprenoid_Biosynthesis	2.x
Isoprenoid_Biosynthesis:_Interconversions	1
Isoprenoinds_for_Quinones	1
KH_domain_RNA_binding_protein_YlqC	1.11
L-fucose_utilization	-1
LOS_core_oligosaccharide_biosynthesis	-1
LSU_ribosomal_proteins_cluster	2
Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway	-1
Lactose_and_Galactose_Uptake_and_Utilization	1.x
Lactose_utilization	1.00
Legionaminic_Acid_Biosynthesis	-1
Leucine_Degradation_and_HMG-CoA_Metabolism	-1
Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)	-1
Lipoic_acid_metabolism	5.0
Lipoprotein_Biosynthesis	2
Lipoprotein_sorting_system	3
LysR-family_proteins_in_Escherichia_coli	1
Lysine_Biosynthesis_DAP_Pathway,_GJO_scratch	-1
Lysine_fermentation	-1
Macromolecular_synthesis_operon	9.x
Magnesium_transport	1
Maltose_and_Maltodextrin_Utilization	1.x
Mannitol_Utilization	-1
MazEF_toxin-antitoxing_(programmed_cell_death)_system	1
Metallocarboxypeptidases_(EC_3.4.17.-)	1
Methanogenesis_strays	-1
Methionine_Degradation	3
Methionine_Salvage	-1
Methylglyoxal_Metabolism	6.x
Methylthiotransferases	1.1110
Molybdopterin_cytosine_dinucleotide	-1
Muconate_lactonizing_enzyme_family	1
Multidrug_Resistance_Efflux_Pumps	1.2
Murein_Hydrolases	3
Mycobacterium_virulence_operon_involved_in_DNA_transcription	1.x
Mycobacterium_virulence_operon_involved_in_an_unknown_function_with_a_Jag_Protein_and_YidC_and_YidD	1
Mycobacterium_virulence_operon_involved_in_protein_synthesis_(LSU_ribosomal_proteins)	1
Mycobacterium_virulence_operon_involved_in_protein_synthesis_(SSU_ribosomal_proteins)	1.x
N-Acetyl-Galactosamine_and_Galactosamine_Utilization	-1
N-linked_Glycosylation_in_Bacteria	-1
NAD_and_NADP_cofactor_biosynthesis_global	E
Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes	1.xx
NhaA,_NhaD_and_Sodium-dependent_phosphate_transporters	1
NiFe_hydrogenase_maturation	9
Nitrosative_stress	4
Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis	1
Nucleoside_triphosphate_pyrophosphohydrolase_MazG	1.110
Nudix_proteins_(nucleoside_triphosphate_hydrolases)	1
NusA-TFII_Cluster	1
Omega_peptidases_(EC_3.4.19.-)	1
One-carbon_metabolism_by_tetrahydropterines	4
Pentose_phosphate_pathway	2
Peptide_methionine_sulfoxide_reductase	1
Peptidoglycan_Biosynthesis	1.9
Peptidoglycan_biosynthesis--gjo	1
Peptidoglycan_lipid_II_flippase	1
Peptidyl-prolyl_cis-trans_isomerase	1
Periplasmic_Stress_Response	1.1
Persister_Cells	1
Phage_packaging_machinery	2
Phage_replication	1.01
Phage_tail_proteins	6
Phage_tail_proteins_2	6
Phd-Doc,_YdcE-YdcD_toxin-antitoxin_(programmed_cell_death)_systems	1
Phenylalanine_and_Tyrosine_Branches_from_Chorismate	missing
Phosphate_metabolism	2.99
Phosphoglycerate_mutase_protein_family	1
Photorespiration_(oxidative_C2_cycle)	-1
Plasmid_replication	-1
Poly-gamma-glutamate_biosynthesis	-1
Polyadenylation_bacterial	2
Polyamine_Metabolism	7
Polyhydroxybutyrate_metabolism	-1
Polyprenyl_Diphosphate_Biosynthesis	1.x
Potassium_homeostasis	3
Programmed_frameshift	1
Proline,_4-hydroxyproline_uptake_and_utilization	-1
Proline_Synthesis	-1
Propanediol_utilization	-1
Proteasome_bacterial	1
Protein_chaperones	1.0
Protein_degradation	1
Proteolysis_in_bacteria,_ATP-dependent	1
Purine_Utilization	5
Purine_conversions	3.99?
Purine_salvage_cluster	9
Putative_TldE-TldD_proteolytic_complex	1
Putative_hemin_transporter	-1
Putative_sugar_ABC_transporter_(ytf_cluster)	-1
Pyrimidine_utilization	-1
Pyruvate:ferredoxin_oxidoreductase	2
Pyruvate_Alanine_Serine_Interconversions	2.0
Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP	1
Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate	2
Queuosine-Archaeosine_Biosynthesis	3.011
Quinate_degradation	3
RNA_3'-terminal_phosphate_cyclase	2
RNA_methylation	1
RNA_modification_and_chromosome_partitioning_cluster	9.x
RNA_modification_cluster	9
RNA_polymerase_bacterial	1.000
RNA_processing_and_degradation,_bacterial	1
RNA_pseudouridine_syntheses	1
Rad50-Mre11_DNA_repair_cluster	2.x
Recycling_of_Peptidoglycan_Amino_Acids	1.1
Redox-dependent_regulation_of_nucleus_processes	2
Resistance_to_fluoroquinolones	1
Respiratory_dehydrogenases_1	1.157
Restriction-Modification_System	3.x
Rhamnose_containing_glycans	9
Riboflavin,_FMN_and_FAD_metabolism	B
Riboflavin,_FMN_and_FAD_metabolism_in_plants	B
Ribonuclease_H	1.110
Ribonucleases_in_Bacillus	1
Ribonucleotide_reduction	1
Ribosomal_protein_S12p_Asp_methylthiotransferase	1
Ribosomal_protein_S5p_acylation	-1
Ribosome_LSU_bacterial	1
Ribosome_biogenesis_bacterial	1
Ribosome_recycling_related_cluster	9
Rrf2_family_transcriptional_regulators	2
Rubrerythrin	9
RuvABC_plus_a_hypothetical	1
Selenocysteine_metabolism	1.0
Serine-glyoxylate_cycle	-1
Serine_Biosynthesis	1.0
Serine_endopeptidase_(EC_3.4.21.-)	1
Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes	-1
SigmaB_stress_responce_regulation	4.x
Signal_peptidase	3
Sporulation-associated_proteins_with_broader_functions	1.110
Staphylococcal_pathogenicity_islands_SaPI	-1
Stationary_phase_repair_cluster	2.x
Synthesis_of_osmoregulated_periplasmic_glucans	1.xx
TRAP_Transporter_collection	1
Taurine_Utilization	-1
Teichoic_and_lipoteichoic_acids_biosynthesis	9
Terminal_cytochrome_d_ubiquinol_oxidases	5
Terminal_cytochrome_oxidases	1.0
Tetracycline_resistance,_ribosome_protection_type	-1
Tetracycline_resistance,_ribosome_protection_type,_too	-1
Thiamin_biosynthesis	9
Thioredoxin-disulfide_reductase	1
Threonine_anaerobic_catabolism_gene_cluster	-1
Threonine_and_Homoserine_Biosynthesis	-1
Threonine_degradation	3
Ton_and_Tol_transport_systems	-1
Toxin-antitoxin_replicon_stabilization_systems	1
Transcription_factors_bacterial	1
Transcription_initiation,_bacterial_sigma_factors	1
Translation_elongation_factor_G_family	4
Translation_elongation_factor_P_lysylation	1.10
Translation_elongation_factors_bacterial	1.1
Translation_initiation_factors_bacterial	1.110
Translation_termination_factors_bacterial	1.11
Transport_of_Nickel_and_Cobalt	3
Transport_system_clustering_with_HemG	1.x
Trehalose_Biosynthesis	-1
Trehalose_Uptake_and_Utilization	-1
Triacylglycerol_metabolism	7
Two-component_regulatory_systems_in_Campylobacter	-1
Two-component_sensor_regulator_linked_to_Carbon_Starvation_Protein_A	-1
Type_I_Restriction-Modification	1
Type_VI_secretion_systems	-1
UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis	X
USS-DB-7	-1
Universal_GTPases	2
Unknown_carbohydrate_utilization_(_cluster_Ydj_)	-1
Unknown_carbohydrate_utilization_(_cluster_Yeg_)	-1
Uracil-DNA_glycosylase	1
Valine_degradation	-1
Xanthine_dehydrogenase_subunits	1
Xylose_utilization	1.x
YcfH	1
Yfa_cluster	-1
YgjD_and_YeaZ	6
YjeE	1.1111
Zinc_resistance	1.110
cAMP_signaling_in_bacteria	1.5000.1
cell_division_cluster_containing_FtsQ	1
cell_division_core_of_larger_cluster	1
dNTP_triphosphohydrolase_protein_family	1
dTDP-rhamnose_synthesis	1.x
mnm5U34_biosynthesis_bacteria	1
n-Phenylalkanoic_acid_degradation	-1
pVir_Plasmid_of_Campylobacter	-1
riboflavin_to_FAD	2
tRNA-dependent_amino_acid_transfers	1
tRNA_aminoacylation,_Ala	1.00
tRNA_aminoacylation,_Arg	1.00
tRNA_aminoacylation,_Asp_and_Asn	1.0
tRNA_aminoacylation,_Cys	1
tRNA_aminoacylation,_Glu_and_Gln	2.01
tRNA_aminoacylation,_Gly	1
tRNA_aminoacylation,_His	1
tRNA_aminoacylation,_Ile	1.00
tRNA_aminoacylation,_Leu	1.00
tRNA_aminoacylation,_Lys	1.00
tRNA_aminoacylation,_Met	1.00
tRNA_aminoacylation,_Phe	1.00
tRNA_aminoacylation,_Pro	1.00
tRNA_aminoacylation,_Ser	1.00
tRNA_aminoacylation,_Thr	1.00
tRNA_aminoacylation,_Trp	1.00
tRNA_aminoacylation,_Tyr	1.00
tRNA_aminoacylation,_Val	1.00
tRNA_modification_Bacteria	1
tRNA_nucleotidyltransferase	1
tRNA_processing	1
tRNA_splicing	-1
tRNAs	1
